Citrus Sinensis ID: 007199

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---
Protein Sequence
MRRALVFLLLSTAIIQSVSSSELSATPPNRYVSEIYNSLLPPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccEEEEEccccccccEEEcccccEEEEEcccccccccEEEEEccccccEEEEEcccccEEEccccHHHHHHHcccccccccEEEEEEEEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEcccccEEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHccccccEEEEEEEEEcccEEEEEEccccccHHHHHHHHccccHHHHHHHHccHHHHHHHHHHccccHHccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHEHHHHHHHHHHHcccccHccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccEEEEEccccccEEcccccccccccccccccccccEEEEEcccccccEEccccHHHHHHHccccccccEEEEEEEEEEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccHcccccccEEEEEcEEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccHHHHHHHHHHccHEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEHcHHcHHHHHcccccccccccccccccHHHHHEEEEEEccccccccccEEEcccccccHHHHHHcc
Coil and Loop (DISEMBL)
MRRALVFLLLSTAIIQSvssselsatppnryvseiynsllppplppepdVALVAALDGTIHLVDTKLgkirwsfgtgrpiyssyqasfnsnasefyldvdedwelyfhskrfgkmkKLSSSAEEYIRrmpyiskdggvtlGAMKTSVFLVdvksgrvvdnyvldfsastpgfqsdenkhvvpvdgYEELVESGVGNLKRIRQLVYIMRTDYvlqstsqdsGEVLWNVAYAdfkaefrcqevgksfsgyhfnsgselgmdligdveshlpchtqmtASVYRLRDNSLPEFLSVIGKVAgwislpgssqnsllgpvdrnsplflpdkvdrpplalpsteteipwtlgmpggsvseinkKHAFVEGFRSYIQSFIVLFIALCPIIGFLfyhskqvkskkqneehitktgipkkkksrrpgynrnttnsekmqniipneskvgetdglshitgngeKFLLTFTdliddrvdgrriGKLVVFNKeiakgsngtvvlegnyegRSVAVKRLVKTHHDVALKEIQNLiasdqhpnivrwygvesdqdFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRllpvmentKDIELwkanghpsAQLLKVTR
Flexible Loop (DISEMBL)
MRRALVFLLLSTAIIqsvssselsatppNRYVSEIYNSLLPPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHskrfgkmkklSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSastpgfqsdenkhVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLqstsqdsgeVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQvkskkqneehitktgipkkkksrrpgynrnttnsekmqniipneskvgetDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVvfnkeiakgsngtvvlegnYEGRSVAVKRLVKTHHDVALKEIqnliasdqhpnIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLnakeqdsnllneVRIRLLPVMENTKDIelwkanghpsaqllkvtr
Low Complexity Region (SEG)
MRRALVFLLLSTAIIQSVSSSELSATPPNRYVSEIYNSllppplppepdvalvaalDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR
Disordered region (IsUnstruct)
***ALVFLLLSTAIIQS*************YVSEIYNSLL*******PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL***AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQ**ENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLP***********************************EIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHS*******************************************************SHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQL*******NLLNEVRIRLLPVMENTKDIELWKA*************
Disordered Region (DISOPRED)
*RRALVFLLLSTAIIQS**********************L*PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGT*************SNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNS***********FLPDKVDRPPLA**************************AFVEGFRSYIQSFIVLFIALCPIIGFLFYHSK*****************************************************************************GRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIY******************LLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR
Disordered Region (DISEMBL)
MRRALVFLLLSTAIIQSVSSSELSATPPNRYVSEIYNSLLPPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSK**********HITK**************NRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR
Disordered Region (DISPRO)
*RRALVFLLLSTAIIQSVS*********************PPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDF********************************KRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQ*************************************************************************RVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRALVFLLLSTAIIQSVSSSELSATPPNRYVSEIYNSLLPPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	613	2.2.26 [Sep-21-2011]
P32361	1115	Serine/threonine-protein	yes	no	0.092	0.051	0.459	3e-16
O94537	1072	Serine/threonine-protein	yes	no	0.230	0.131	0.356	6e-16
Q55GJ2	984	Probable serine/threonine	yes	no	0.138	0.086	0.465	2e-14
Q9Z2E3	911	Serine/threonine-protein	yes	no	0.141	0.095	0.386	8e-13
Q76MJ5	926	Serine/threonine-protein	yes	no	0.141	0.093	0.386	9e-13
Q09499	967	Serine/threonine-protein	yes	no	0.047	0.029	0.454	1e-12
Q9EQY0	977	Serine/threonine-protein	no	no	0.141	0.089	0.352	9e-12
O75460	977	Serine/threonine-protein	no	no	0.141	0.089	0.352	1e-11
Q559A2	1431	Probable serine/threonine	no	no	0.130	0.055	0.433	5e-07
Q55DJ9	1505	Probable serine/threonine	no	no	0.141	0.057	0.397	5e-06

>sp|P32361|IRE1_YEAST Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRE1 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%)

Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIV 530
           +  LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN++
Sbjct: 670 LKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVI 729

Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLI 557
           R+Y  E+   F+Y++LE C  +L DL+
Sbjct: 730 RYYCSETTDRFLYIALELCNLNLQDLV 756

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices HAC1 precursor mRNA to produce the mature form which then induces transcription of UPR target genes.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -

>sp|O94537|PPK4_SCHPO Serine/threonine-protein kinase ppk4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk4 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 415 RPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKL 474
           +  + +N T     +NI+  + K   TD L     +  K  L    +I +      +  L
Sbjct: 596 QASFEQNQTLDILSENIVEIQDK--STDPLQKSLDSSLKSHLPEATVIQNTDGSVTVNSL 653

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYG 534
            V+ + I  GS+GT+V  G YE R VAVKR++   +D+A +EI  L  SD HPNIVR+Y 
Sbjct: 654 TVYPEVIGYGSHGTIVYRGVYEDREVAVKRVLMEFYDLASREITLLQQSDNHPNIVRYYC 713

Query: 535 VESDQDFVYLSLERCTCSLNDLI 557
            +    F+Y+ +E C C+L+DLI
Sbjct: 714 KQKSDQFLYIVIELCKCNLSDLI 736

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q55GJ2|IREA_DICDI Probable serine/threonine-protein kinase ireA OS=Dictyostelium discoideum GN=ireA PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 470 RIGKL-VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPN 528
           +IGKL ++ NK +  GS GT+V EG  EGR VAVKR++      A +E+  LI SD+H N
Sbjct: 569 KIGKLEIITNKILGTGSCGTIVYEGKMEGRKVAVKRMLSQFVKFADREVSILIHSDEHTN 628

Query: 529 IVRWYGVESDQDFVYLSLERCTCSLN 554
           +VR+Y  E D +F+YL++  C  SL+
Sbjct: 629 VVRYYAKEEDDEFIYLAISFCQKSLD 654

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus musculus GN=Ern2 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 471 IGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
           +GK+    K++  +G+ GT V  G +EGR+VAVKRL++    +  +E+Q L  SD+HPN+
Sbjct: 503 VGKISFNPKDVLGRGAGGTFVFRGQFEGRAVAVKRLLRECFGLVRREVQLLQESDRHPNV 562

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLI 557
           +R++  E    F Y++LE C  SL + +
Sbjct: 563 LRYFCTEHGPQFHYIALELCQASLQEYV 590

Role in expression of the DDIT3 transcription factor, required for the unfolded-protein response, growth arrest and apoptosis. Has no effect on 28S ribosomal RNA cleavage, unlike the corresponding human protein.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q76MJ5|ERN2_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Homo sapiens GN=ERN2 PE=1 SV=4

 Score = 75.9 bits (185), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 471 IGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
           +GK+    K++  +G+ GT V  G +EGR+VAVKRL++    +  +E+Q L  SD+HPN+
Sbjct: 515 VGKISFNPKDVLGRGAGGTFVFRGQFEGRAVAVKRLLRECFGLVRREVQLLQESDRHPNV 574

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLI 557
           +R++  E    F Y++LE C  SL + +
Sbjct: 575 LRYFCTERGPQFHYIALELCRASLQEYV 602

Induces translational repression through 28S ribosomal RNA cleavage in response to ER stress. Pro-apoptotic. Appears to play no role in the unfolded-protein response, unlike closely related proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q09499|IRE1_CAEEL Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%)

Query: 481 IAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD 540
           +  G  GTVV  G ++GR VAVKR+V      A +E   L  SD HP+++R++ +ESD  
Sbjct: 524 LGTGCEGTVVYRGTFDGREVAVKRVVSEFVKFAHREADLLRESDTHPHVIRYFCMESDSQ 583

Query: 541 FVYLSLERCTCSLNDLI 557
           F YL+LE C  SLND +
Sbjct: 584 FRYLALELCIASLNDYV 600

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices xbp-1 precursor mRNA to produce the mature form which then induces transcription of UPR target genes. Unfolded protein response (UPR) transcripional activation by ire-1, as well as translational attenuation by pek-1 in a complementary pathway, maintains ER homeostasis. Ire-1 and pek-1 are redundant genes that control a pathway essential for larval development and survival.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q9EQY0|ERN1_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Mus musculus GN=Ern1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 471 IGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
           +GK+    K++   G+ GT+V +G ++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct: 566 VGKISFCPKDVLGHGAEGTIVYKGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 625

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLI 557
           +R++  E D+ F Y+++E C  +L + +
Sbjct: 626 IRYFCTEKDRQFQYIAIELCAATLQEYV 653

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices XBP1 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator and triggering growth arrest and apoptosis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|O75460|ERN1_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Homo sapiens GN=ERN1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 471 IGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
           +GK+    K++   G+ GT+V  G ++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct: 566 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 625

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLI 557
           +R++  E D+ F Y+++E C  +L + +
Sbjct: 626 IRYFCTEKDRQFQYIAIELCAATLQEYV 653

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices XBP1 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator and triggering growth arrest and apoptosis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q559A2|IRLA_DICDI Probable serine/threonine-protein kinase irlA OS=Dictyostelium discoideum GN=irlA PE=3 SV=1

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 478  NKEIAKGSNGTVVLEGNYEGR-SVAVKRLVKTHHDVALKEIQNLI--ASDQHPNIVRWYG 534
            N  I +GSNGT+V  G +  R  VAVK++ K  +    KEI+ LI   S+   N++R+  
Sbjct: 990  NNIIGRGSNGTLVFRGIWNDRIPVAVKQMQKAFNPHISKEIEVLIRLTSNNCSNMIRYID 1049

Query: 535  VESDQDFVYLSLERCTCSLNDLI 557
             E DQ FVYL L  C  SL DL+
Sbjct: 1050 QEEDQLFVYLGLTLCEESLQDLM 1072

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q55DJ9|IRLD_DICDI Probable serine/threonine-protein kinase irlD OS=Dictyostelium discoideum GN=irlD PE=3 SV=1

 Score = 53.5 bits (127), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 471  IGKLVVFNKE---IAKGSNGTVVLEGNYEGR-SVAVKRLVKTHHDVALKEIQNLIA--SD 524
            IGK     K+   I +GSNGT+V +G +  R  VA+K++ K  + +  KEI+ LI   + 
Sbjct: 1047 IGKFKFSRKDEFIIGRGSNGTLVFKGIWNDRIPVAIKQMHKAFNPLISKEIEVLITLTNK 1106

Query: 525  QHPNIVRWYGVESDQDFVYLSLERCTCSLNDLI 557
               NIVR+   E D  FVYL L  C  SL +L+
Sbjct: 1107 NCNNIVRYIDQEEDDMFVYLGLTLCNGSLQNLV 1139

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	613
255539280	720	conserved hypothetical protein [Ricinus	0.969	0.825	0.496	1e-152
225457602	925	PREDICTED: uncharacterized protein LOC10	0.955	0.633	0.438	1e-128
297745578	827	unnamed protein product [Vitis vinifera]	0.859	0.637	0.426	1e-115
225438442	957	PREDICTED: uncharacterized protein LOC10	0.949	0.608	0.398	1e-102
224074275	822	predicted protein [Populus trichocarpa]	0.840	0.626	0.398	4e-86
255561453	911	kinase, putative [Ricinus communis] gi|2	0.889	0.598	0.371	4e-82
334187906	887	protein inositol requiring 1-1 [Arabidop	0.866	0.598	0.367	1e-81
15277137	881	Ire1 homolog-1 [Arabidopsis thaliana]	0.866	0.602	0.367	1e-81
10177897	939	unnamed protein product [Arabidopsis tha	0.866	0.565	0.367	1e-81
18420784	881	protein inositol requiring 1-1 [Arabidop	0.866	0.602	0.367	1e-81

>gi|255539280|ref|XP_002510705.1| conserved hypothetical protein [Ricinus communis] gi|223551406|gb|EEF52892.1| conserved hypothetical protein [Ricinus communis]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 318/640 (49%), Positives = 415/640 (64%), Gaps = 46/640 (7%)

Query: 1   MRRALVFLLLSTA----IIQSVSSSELSA-TPPNR--YVSEIYNSLLPPPLPPEPDVALV 53
           MRR L+ LL        +I+S+S S +S  + P+    +S++Y S LPP   P+ DVALV
Sbjct: 1   MRRYLILLLFKLVMLIPLIRSISGSAISQPSIPDESSQISKLYKSFLPPK--PKQDVALV 58

Query: 54  AALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASE-----------FYLDVDED 102
           AALDGT++ VDT   K+RWSF +G PIYSSYQA+ N +              +Y+D  +D
Sbjct: 59  AALDGTVYFVDTNSRKVRWSFSSGSPIYSSYQANPNDDEDRHNSGSELSNDLYYIDCGDD 118

Query: 103 WELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYV 162
           WELY HSKRFGK++KL+ S EEY++  P+IS+DG +TLG  +T+ FLVD K+GRVV  Y 
Sbjct: 119 WELYVHSKRFGKLQKLALSPEEYVKMTPHISEDGEITLGFKRTTAFLVDAKTGRVVRTYG 178

Query: 163 LDFSASTPGFQSDENKHVVPVDGYEELVESG--VGNLKRIRQLVYIMRTDYVLQSTSQDS 220
            D S ST G Q DE   ++ V    EL++S   V +L  ++ LVYI RTDYVLQ  S +S
Sbjct: 179 FDNSTSTFGAQYDERNALLLVKD-AELIKSAAAVADLGTVQHLVYITRTDYVLQHYSPNS 237

Query: 221 GEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYR 280
            ++LWNVA+AD +AEFRCQ +  S SG      S    D + ++E   PC  QM   V R
Sbjct: 238 TDILWNVAFADIEAEFRCQGLRSSLSGV-----SPSASDDVDEIE--FPC--QMRTPVLR 288

Query: 281 LRDNSLPEF--LSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTET 338
           +RD+S  EF  L++    AG   LP       LGPV R  PL LP   DR  LALP++E 
Sbjct: 289 VRDHSFLEFDKLAIAHLGAGARFLPAPDHILPLGPVQR-YPLALPTHEDRVVLALPASEA 347

Query: 339 EIPWTLGMPGGSVSEINKKHAFVEGF-RSYIQSFIVLFIALCPIIGFLFYHSKQVKSK-- 395
             P  LG+P G ++ IN  +   E    S++   I    A+  I+G + Y+    + K  
Sbjct: 348 ANPRNLGLPSG-IAGINGTNLSSEIITNSHMWPIIA---AILSIVGSICYNYLTFRKKNE 403

Query: 396 --KQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEK 453
             K  EE   + G+PKKKKS+R G N+ +   E+ Q  +P E+ VG+  G+SH+  N E+
Sbjct: 404 LNKPVEELKQQAGVPKKKKSKRSG-NKQSPTRERRQRYLPLENNVGDDVGVSHVEEN-ER 461

Query: 454 FLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA 513
            LLTF +++D R+DGR+IGKL+V NKEIAKGSNGTVVLEG Y+GRSVAVKRLV+THHDVA
Sbjct: 462 KLLTFANVVDGRIDGRKIGKLIVSNKEIAKGSNGTVVLEGIYDGRSVAVKRLVQTHHDVA 521

Query: 514 LKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQ 573
           LKEIQNLIASDQHPNIVRWYGVE DQDFVYL+LERCTCSLND IYV S SF+ Q+ +K+ 
Sbjct: 522 LKEIQNLIASDQHPNIVRWYGVEYDQDFVYLALERCTCSLNDFIYVYSQSFQNQVLSKDV 581

Query: 574 DSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
           DSN L    ++   ++E  ++IELWK NGHPS +LLK+ R
Sbjct: 582 DSNCLPVCTVQSRTMLEYNRNIELWKTNGHPSLRLLKLMR 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457602|ref|XP_002272934.1| PREDICTED: uncharacterized protein LOC100247854 [Vitis vinifera]

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 290/662 (43%), Positives = 395/662 (59%), Gaps = 76/662 (11%)

Query: 1   MRRALVFLL--LSTAIIQSVSSS-ELSATPPNRYVSEIYNSLLPPPLPPEPDVALVAALD 57
           M+R+L+FLL  +S + + ++S+  E S    +    +I  +    P  P+ D+ALVAALD
Sbjct: 1   MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAPKNDIALVAALD 60

Query: 58  GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSN-----ASEFYLDVDEDWELYFHSKRF 112
           GTI+LV+    KI WSF +G  IYSSYQA  + +     +++F++D  +DWELY H+  F
Sbjct: 61  GTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNISF 120

Query: 113 GKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGF 172
           GK +KL  + E+Y+   PY+SKDG VT+G+ KT+VFLVD KSG +++ +  D S    GF
Sbjct: 121 GKREKLLLTPEKYVEGAPYVSKDG-VTVGSKKTTVFLVDAKSGTIINTFRSDASPLIGGF 179

Query: 173 QSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADF 232
           QSDE   ++  +  EEL+E G  +L+++   +YIMRTDYVLQ  S  SG+VLWNV +AD 
Sbjct: 180 QSDEENPILSREEIEELIEPGDVDLQKVELPLYIMRTDYVLQHFSPTSGKVLWNVKFADI 239

Query: 233 KAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSL------ 286
           +A F+C              G+E+G + + D+ES  P H Q  ASVYR+R+ SL      
Sbjct: 240 EAVFQC-------------PGTEIGSEYMSDIES--PLHCQTRASVYRIREPSLLDSFPM 284

Query: 287 ----PEFLSVIGKVA----------------------------GWISLPGSSQNSLLGPV 314
               P+ L  +  ++                              +SLP S   SL  PV
Sbjct: 285 HDRLPKTLPAVEVLSLPASEPKSHSLLDSFPMHDRLPKALPAVEVLSLPASEPKSLSQPV 344

Query: 315 DR-NSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIV 373
            R   P  L     +P LALP +E     TL + GG  SE++     +      I+   +
Sbjct: 345 GRLPGPHHLGQ--GKPLLALPLSEG----TLSVHGGDASEMD----IMSIVSDNIEKLGI 394

Query: 374 LFIALCPIIGFLFYHSKQVKSKKQNEEHITKT-GI-PKKKKSRRPGYNRNTTNSEKMQNI 431
               L  I+GF+ Y    V+   ++    +K  GI PKKKK+R+   N+N  ++EK    
Sbjct: 395 WAAPLLFIVGFIIYQFFAVREPGKSRPKDSKVQGISPKKKKARKSVINKNNASNEKRHGN 454

Query: 432 IPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVL 491
           I +ESKV + +GLS +  N  K  L    L D  V  R+IGK++V  KEIAKGSNGT+VL
Sbjct: 455 ISHESKVADNNGLSQVERNEIKLELNSNSLADVHVGERKIGKMLVSKKEIAKGSNGTIVL 514

Query: 492 EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC 551
           EG Y+GR VAVKRLV+THHDVALKEIQNLIASDQHPNIVRW+GVE DQDFVYLSLERC C
Sbjct: 515 EGIYDGRPVAVKRLVRTHHDVALKEIQNLIASDQHPNIVRWHGVEYDQDFVYLSLERCNC 574

Query: 552 SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKV 611
           SL+DLIY+ S S ++QL  ++ DSN+LNE  +RL  +M+  KD ELWK NG+PS QLLK+
Sbjct: 575 SLSDLIYLCSDS-QDQLVNQDWDSNILNEYIVRLHSIMDPNKDFELWKTNGYPSPQLLKL 633

Query: 612 TR 613
            R
Sbjct: 634 MR 635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745578|emb|CBI40743.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 266/623 (42%), Positives = 361/623 (57%), Gaps = 96/623 (15%)

Query: 1   MRRALVFLL--LSTAIIQSVSSS-ELSATPPNRYVSEIYNSLLPPPLPPEPDVALVAALD 57
           M+R+L+FLL  +S + + ++S+  E S    +    +I  +    P  P+ D+ALVAALD
Sbjct: 1   MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAPKNDIALVAALD 60

Query: 58  GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSN-----ASEFYLDVDEDWELYFHSKRF 112
           GTI+LV+    KI WSF +G  IYSSYQA  + +     +++F++D  +DWELY H+  F
Sbjct: 61  GTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNISF 120

Query: 113 GKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGF 172
           GK +KL  + E+Y+   PY+SKDG VT+G+ KT+VFLVD KSG +++ +  D S    GF
Sbjct: 121 GKREKLLLTPEKYVEGAPYVSKDG-VTVGSKKTTVFLVDAKSGTIINTFRSDASPLIGGF 179

Query: 173 QSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADF 232
           QSDE   ++  +  EEL+E G  +L+++   +YIMRTDYVLQ  S  SG+VLWNV +AD 
Sbjct: 180 QSDEENPILSREEIEELIEPGDVDLQKVELPLYIMRTDYVLQHFSPTSGKVLWNVKFADI 239

Query: 233 KAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPEFLSV 292
           +A F+C              G+E+G + + D+ES L C T+                 S 
Sbjct: 240 EAVFQC-------------PGTEIGSEYMSDIESPLHCQTRA----------------SP 270

Query: 293 IGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPSTETEIPWTLGMPGGSVS 352
           +G+      LPG      LG               +P LALP +E     TL + GG  S
Sbjct: 271 VGR------LPGPHH---LGQ-------------GKPLLALPLSEG----TLSVHGGDAS 304

Query: 353 EINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQVKSKKQNEEHITKT-GI-PKK 410
           E++     +      I+   +    L  I+GF+ Y    V+   ++    +K  GI PKK
Sbjct: 305 EMD----IMSIVSDNIEKLGIWAAPLLFIVGFIIYQFFAVREPGKSRPKDSKVQGISPKK 360

Query: 411 KKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRR 470
           KK+R+   N+N  ++EK    I +ESKV + +GLS +  N  K  L    L D  V  R+
Sbjct: 361 KKARKSVINKNNASNEKRHGNISHESKVADNNGLSQVERNEIKLELNSNSLADVHVGERK 420

Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIV 530
           IGK++V  KEIAKGSNGT+VLEG Y+GR VAVKRLV+THHDVALKEIQNLIASDQHPNIV
Sbjct: 421 IGKMLVSKKEIAKGSNGTIVLEGIYDGRPVAVKRLVRTHHDVALKEIQNLIASDQHPNIV 480

Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVME 590
           RW+GVE DQDFVYLSLERC CSL+DLIY+ S S ++QL                      
Sbjct: 481 RWHGVEYDQDFVYLSLERCNCSLSDLIYLCSDS-QDQL---------------------- 517

Query: 591 NTKDIELWKANGHPSAQLLKVTR 613
              D ELWK NG+PS QLLK+ R
Sbjct: 518 ---DFELWKTNGYPSPQLLKLMR 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438442|ref|XP_002275036.1| PREDICTED: uncharacterized protein LOC100249111 [Vitis vinifera]

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 260/653 (39%), Positives = 358/653 (54%), Gaps = 71/653 (10%)

Query: 2   RRALVFLLLSTAIIQSVSSSELSATPPNRYV-SEIYNSLLPPPLPPEPDVALVAALDGTI 60
           RR+L+      ++ +SV S     TP   YV   I N L       + D ALVAAL+GTI
Sbjct: 48  RRSLL------SLPKSVDSPIFLDTPSTVYVLYSICNVLNHGKFLSKNDTALVAALNGTI 101

Query: 61  HLVDTKLGKIRWSFGTGRPIYSSYQASFNSN-----ASEFYLDVDEDWELYFHSKRFGKM 115
           HLV++   K+ WSF +G  IYSSYQA  + +      S F++D  EDWELY H + FGK+
Sbjct: 102 HLVESNSMKVLWSFTSGPSIYSSYQAPLDQDNATDWGSGFFVDCGEDWELYMHGRHFGKV 161

Query: 116 KKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSD 175
           K L  +AEE+I   P++S+DGGV LG+ +T+VFL++ K+G+++ +Y    S  TP   S+
Sbjct: 162 K-LPMTAEEFISSTPHVSEDGGVILGSKQTTVFLLNAKTGKLIHSYRSLESPPTP--LSN 218

Query: 176 ENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAE 235
           + + VV     EE V+SG  NL  +   +YI RTDY LQS +Q S +VLWN+  A+  A 
Sbjct: 219 KEESVVHDKDIEEWVDSGSTNLNIVEPRLYITRTDYSLQSFAQGSDKVLWNMTVAEIGAA 278

Query: 236 FRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRLRDNSLPE------F 289
           F CQ     FS    N G ELG +   D E  LPC  Q  A VYR R +++ E       
Sbjct: 279 FLCQGTENLFSRPPLNLGCELGPEYNCDFEMPLPC--QSKAVVYRYRGHTMLEPFPRHDR 336

Query: 290 LSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPS-------------T 336
           L    +    +  P   +     P D   P  +P+ +      LPS              
Sbjct: 337 LQEAHQEDRLLLQPNIDKTLDFHPQDMMLPAVVPNHM------LPSEPKDEISLNFQDNN 390

Query: 337 ETEIPWTLGMP---GGSVSEINKKHAFVEGFR-----SYIQSFIVLFIAL-------C-P 380
           ++E    L  P      +S+ N +  + +G       S + S IV  + L       C P
Sbjct: 391 DSEAVLPLSPPKIKNSGISDQNVQMPYNDGLSMFSGGSILFSLIVFIVILLVSVIYCCTP 450

Query: 381 IIGFLFYHSKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGE 440
           + G     +KQ      N        +P KK+  R     N ++ +K ++++ +E+K   
Sbjct: 451 VAGEQGEMNKQPNDSDSN-------SVPSKKRKIRKSAKNNISSGKKDEHVL-SENK--- 499

Query: 441 TDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSV 500
            DG +HI  +   +L     L+D   +GR +GKL V N  IAKGSNGT+VLEG +EGRSV
Sbjct: 500 -DGSAHIASDNSPWL-NLNGLVDGDTNGRIVGKLFVSNIVIAKGSNGTIVLEGIHEGRSV 557

Query: 501 AVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVL 560
           AVKRLV+ HHDVA KEIQNLIASD+HPNIVRWYGVE DQDFVYLSLERCTCSLNDL+ + 
Sbjct: 558 AVKRLVRAHHDVAFKEIQNLIASDRHPNIVRWYGVEYDQDFVYLSLERCTCSLNDLLQIH 617

Query: 561 SGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
           S S +    + +Q +  + E RI+L  V    +DI+LWK+NG+PS+ LL + R
Sbjct: 618 SNSSQNPGFSMDQATKAMMEYRIQLDSVKCIVQDIKLWKSNGYPSSVLLSLMR 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074275|ref|XP_002304333.1| predicted protein [Populus trichocarpa] gi|222841765|gb|EEE79312.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 324/580 (55%), Gaps = 65/580 (11%)

Query: 52  LVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASE---------FYLDVDED 102
           LVA L+GTI+  D   GKI WSF +G P YSSYQA    ++ +         F+LD  +D
Sbjct: 1   LVALLNGTIYFKDKISGKILWSFSSGGPTYSSYQAPAKHDSDKEKGPGGLTGFFLDYGDD 60

Query: 103 WELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYV 162
           W+LY H K  G MK L  + E++I+  P++S+DG V LG+ KT+VF+V+ K+GR++  + 
Sbjct: 61  WQLYAHYKYSGGMK-LPMNIEDFIKITPHMSEDGAVMLGSKKTTVFVVEAKTGRLIRTFK 119

Query: 163 L-DFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSG 221
             D  +S   F+     H   ++  ++L++SG  N     Q++YI+RTDY LQ+   +S 
Sbjct: 120 SPDSPSSLQSFEEGSGLHD-DLNNNKDLLKSGSSN---TAQVIYILRTDYALQTFGPNSD 175

Query: 222 EVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTASVYRL 281
           +V W+   A   A F C++V          + SE+  +L  +++S  P   Q    V + 
Sbjct: 176 KVSWSTKVATIGATFLCKDV---------ENPSEV-FNLSFELDSDTPLSCQSRRIVVQR 225

Query: 282 RDNSLPEFLSVIGKVAGWISLPGSSQNSLLGP---VDRNSPLFLPDKVDRPPLALPSTET 338
           +D S  ++ S  G + G   LP S+ N +L     V+++    L D   R  LA PS   
Sbjct: 226 QDKS--QYSS--GDIHGEDKLPLSAPNLMLTTQPGVEKS----LDDHHARMLLAAPSEHG 277

Query: 339 EIPWTLGMPGGSVS-EINKKHAFVEGFRSYIQSFIVLFIALCPIIGFLFYHSKQVKSKKQ 397
           +    L +P  S + E++ +   +  + S  QSFI LF+ +  ++ F+ Y SK+  +   
Sbjct: 278 K--EMLALPSASAAGEVHYRFGMLLMW-STTQSFI-LFVGIL-LLCFVLYLSKESFTL-- 330

Query: 398 NEEHITKTGIPKKKKSRR----PGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEK 453
            E  +T TG+      ++    PG  +N  + E    I P E                 K
Sbjct: 331 -EGQLTGTGLKASSSKKKKAKKPG--KNNVSVENGNEIAPGEGV--------------NK 373

Query: 454 FLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA 513
            L     L+D   +GRRIGKL V N EIAKGSNGTVVLEG YEGR VAVKRLV+THHDVA
Sbjct: 374 TLSDLNKLVDGGANGRRIGKLFVSNTEIAKGSNGTVVLEGVYEGRLVAVKRLVQTHHDVA 433

Query: 514 LKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQ 573
            KEIQNLIASD+HPNIVRWYGVE D+DFVYLSLERCTCSL+DLI + S S    +  K++
Sbjct: 434 WKEIQNLIASDRHPNIVRWYGVEYDEDFVYLSLERCTCSLDDLIQIYSDSSLNPVYGKDR 493

Query: 574 DSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
            S    E ++RL  V    +D+ LWKA GHPS  LL + R
Sbjct: 494 TSRAAIEHKLRLDSVKGVMQDLNLWKATGHPSPLLLTLMR 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561453|ref|XP_002521737.1| kinase, putative [Ricinus communis] gi|223539128|gb|EEF40724.1| kinase, putative [Ricinus communis]

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 319/584 (54%), Gaps = 39/584 (6%)

Query: 47  EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSN---------ASEFYL 97
           E    LVA L+GTI+  +T   ++ WSF +G PIYSSYQASFN +         ++ F++
Sbjct: 61  EDSTELVALLNGTIYFQETNSERVFWSFSSGAPIYSSYQASFNQDNDGENEFGPSTGFFI 120

Query: 98  DVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRV 157
           D  +DW+LY H K    MK LS + E+++   P++S+DG V LG+  T+VF+V+ K+GR+
Sbjct: 121 DYGDDWQLYAHGKHSSGMK-LSMNIEDFMIITPHVSEDGAVILGSKITTVFVVEAKTGRL 179

Query: 158 VDNY-VLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQST 216
           V  Y  LD  +S    + +E    +  +   +L+   + +     QL+YI RTDY LQ+ 
Sbjct: 180 VQTYKSLDPPSSLQ--RDEEGNAFLNENRNNDLI---ISDSATSAQLIYITRTDYTLQNF 234

Query: 217 SQDSGEVLWNVAYADFKAEFRCQEV-GKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMT 275
             +S ++ WN+  A  +A F C++V G+S      +  S     ++   + +    ++ T
Sbjct: 235 GPNSDKISWNMKVAMIEAAFLCKDVEGRSNFDMPLSCQSR---RMVVRRQGNPQSSSEAT 291

Query: 276 ASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLPDKVDRPPLALPS 335
                L   +L   L    +V    SL    +  +L     +  L L  KVD  P   P+
Sbjct: 292 HGDEMLPVPALDLVLPSQPRVGK--SLQDHHEGRMLSGSASDFVLPLQSKVDELPTFHPT 349

Query: 336 TETEIPWTLGMPGGS--VSEINKKHAFVEGFRSYIQ---SFIVLFIALCPIIGFLFYHSK 390
            ++E    L +P  S      N + AF +     I+   +   +F  +  ++GF FY S 
Sbjct: 350 DDSE--GMLALPNDSEGFDAHNARVAFDDWLNILIKRSTTLSFMFFIVIILLGFNFYPSN 407

Query: 391 QV-KSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITG 449
            V KSK  +E   + +        R+        N +     +P E+  G T     ++ 
Sbjct: 408 LVGKSKVASEGLSSDSSSKASSSKRKKSRKSGKKNGKD----VPFENDDGPT-----LSD 458

Query: 450 NGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH 509
           + +K LL     +D  V+GRRIGKL V N EIAKGSNGT+VLEG YEGR VAVKRLV+ H
Sbjct: 459 SSDKKLLDLNKHVDRGVNGRRIGKLFVSNAEIAKGSNGTIVLEGIYEGRPVAVKRLVQAH 518

Query: 510 HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLN 569
           H+VA KEIQNLIASD+HPNIVRWYGVE+D DFVYLSLERCTCSL+DLI +   S   Q+ 
Sbjct: 519 HEVAFKEIQNLIASDRHPNIVRWYGVENDNDFVYLSLERCTCSLDDLIQIYCDSSFNQVF 578

Query: 570 AKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
           +++Q + +    ++RL  V    +D+ LWK+NGHPS  +L + R
Sbjct: 579 SEDQATRVATNYKLRLNKVKGILQDLNLWKSNGHPSPLMLLLMR 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187906|ref|NP_001190382.1| protein inositol requiring 1-1 [Arabidopsis thaliana] gi|332005919|gb|AED93302.1| protein inositol requiring 1-1 [Arabidopsis thaliana]

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 294/582 (50%), Gaps = 51/582 (8%)

Query: 47  EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASE----------FY 96
           E    LV+ +DG+I LVD    K+ W+F T  PIYSSYQA      ++          FY
Sbjct: 51  ESGYVLVSTVDGSISLVDMSSQKLDWTFHTNEPIYSSYQAPHYHYTTDEERSSVLGDDFY 110

Query: 97  LDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGR 156
           +D D+DW LY  S R GK       A E+I  +PY S D  + LG   TSVFL+D K+G+
Sbjct: 111 MDCDKDWRLYNSSVRKGKRVNEIVDASEFIGTLPYTSTDR-IVLGKKDTSVFLLDWKTGK 169

Query: 157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQST 216
           +V  Y +D   S    ++D+ K +V       L  SG    +   +LVYI R D+ +Q  
Sbjct: 170 LVKRYRMDELYSNTVVENDKEKAIVLSKEAPLLFGSGFKKSEDFPELVYIERKDFKIQCI 229

Query: 217 SQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTA 276
           S+  G+VLW+V+YA  +A+ +  E  +  SG   + G           ++  P     + 
Sbjct: 230 SK-FGDVLWSVSYAKMEAKLQNHESVQFISGLSSSVG-----------KNQFPLSYTTSV 277

Query: 277 SVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLP-DKVDRPPLALPS 335
            + +LR+         +G +   + LP   +      +   + L LP +K     L+LP 
Sbjct: 278 PMVQLRNVKYETLFPRLGFLDEALYLPFQDRKPNQLAIGDGNQLTLPGNKEAEEVLSLPL 337

Query: 336 TETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALC----PIIGFLFYHSKQ 391
            ET I     +  GS  +         GF S     IVL    C     + G  FY  +Q
Sbjct: 338 PETVISQITDIIDGSTKQ--------AGFASKFSGLIVLIFGFCVTMLSVCGLFFYRLRQ 389

Query: 392 VKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNG 451
             S +  E ++++  I   KK +           +K    I      G     SH   N 
Sbjct: 390 --SIRIKEPYVSEVPIATPKKKKSKKNGTTKAVHKKENGFIS-----GGNKDPSH-EENE 441

Query: 452 EKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD 511
           ++ L  F  L +   +G R+GKL V NKEIAKGSNGTVVLEG+YEGR VAVKRLV++HHD
Sbjct: 442 KRLLTAFPGLNNSSAEGYRVGKLFVSNKEIAKGSNGTVVLEGSYEGRLVAVKRLVQSHHD 501

Query: 512 VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAK 571
           VA KEI NL+ASD+H NIVRWYGV+ D+ F+Y+SLE C CSLNDLIY  S   E  + + 
Sbjct: 502 VAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLIYASSALLESPMASS 561

Query: 572 EQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
              S       I++ P+ EN K +ELWK NGHPS  LLK+ R
Sbjct: 562 SIHS-------IQINPIFENGKGVELWKENGHPSPVLLKLMR 596

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15277137|dbj|BAB63366.1| Ire1 homolog-1 [Arabidopsis thaliana]

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 294/582 (50%), Gaps = 51/582 (8%)

Query: 47  EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASE----------FY 96
           E    LV+ +DG+I LVD    K+ W+F T  PIYSSYQA      ++          FY
Sbjct: 45  ESGYVLVSTVDGSISLVDMSSQKLDWTFHTNEPIYSSYQAPHYHYTTDEERSSVLGDDFY 104

Query: 97  LDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGR 156
           +D D+DW LY  S R GK       A E+I  +PY S D  + LG   TSVFL+D K+G+
Sbjct: 105 MDCDKDWRLYNSSVRKGKRVNEIVDASEFIGTLPYTSTDR-IVLGKKDTSVFLLDWKTGK 163

Query: 157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQST 216
           +V  Y +D   S    ++D+ K +V       L  SG    +   +LVYI R D+ +Q  
Sbjct: 164 LVKRYRMDELYSNTVVENDKEKAIVLSKEAPLLFGSGFKKSEDFPELVYIERKDFKIQCI 223

Query: 217 SQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTA 276
           S+  G+VLW+V+YA  +A+ +  E  +  SG   + G           ++  P     + 
Sbjct: 224 SK-FGDVLWSVSYAKMEAKLQNHESVQFISGLSSSVG-----------KNQFPLSYTTSV 271

Query: 277 SVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLP-DKVDRPPLALPS 335
            + +LR+         +G +   + LP   +      +   + L LP +K     L+LP 
Sbjct: 272 PMVQLRNVKYETLFPRLGFLDEALYLPFQDRKPNQLAIGDGNQLTLPGNKEAEEVLSLPL 331

Query: 336 TETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALC----PIIGFLFYHSKQ 391
            ET I     +  GS  +         GF S     IVL    C     + G  FY  +Q
Sbjct: 332 PETVISQITDIIDGSTKQ--------AGFASKFSGLIVLIFGFCVTMLSVCGLFFYRLRQ 383

Query: 392 VKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNG 451
             S +  E ++++  I   KK +           +K    I      G     SH   N 
Sbjct: 384 --SIRIKEPYVSEVPIATPKKKKSKKNGTTKAVHKKENGFIS-----GGNKDPSH-EENE 435

Query: 452 EKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD 511
           ++ L  F  L +   +G R+GKL V NKEIAKGSNGTVVLEG+YEGR VAVKRLV++HHD
Sbjct: 436 KRLLTAFPGLNNSSAEGYRVGKLFVSNKEIAKGSNGTVVLEGSYEGRLVAVKRLVQSHHD 495

Query: 512 VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAK 571
           VA KEI NL+ASD+H NIVRWYGV+ D+ F+Y+SLE C CSLNDLIY  S   E  + + 
Sbjct: 496 VAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLIYASSALLESPMASS 555

Query: 572 EQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
              S       I++ P+ EN K +ELWK NGHPS  LLK+ R
Sbjct: 556 SIHS-------IQINPIFENGKGVELWKENGHPSPVLLKLMR 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177897|dbj|BAB11229.1| unnamed protein product [Arabidopsis thaliana]

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 296/582 (50%), Gaps = 51/582 (8%)

Query: 47  EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQA---SFNSN-------ASEFY 96
           E    LV+ +DG+I LVD    K+ W+F T  PIYSSYQA    + ++         +FY
Sbjct: 105 ESGYVLVSTVDGSISLVDMSSQKLDWTFHTNEPIYSSYQAPHYHYTTDEERSSVLGDDFY 164

Query: 97  LDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGR 156
           +D D+DW LY  S R GK       A E+I  +PY S D  + LG   TSVFL+D K+G+
Sbjct: 165 MDCDKDWRLYNSSVRKGKRVNEIVDASEFIGTLPYTSTDR-IVLGKKDTSVFLLDWKTGK 223

Query: 157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQST 216
           +V  Y +D   S    ++D+ K +V       L  SG    +   +LVYI R D+ +Q  
Sbjct: 224 LVKRYRMDELYSNTVVENDKEKAIVLSKEAPLLFGSGFKKSEDFPELVYIERKDFKIQCI 283

Query: 217 SQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTA 276
           S+  G+VLW+V+YA  +A+ +  E  +  SG   + G           ++  P     + 
Sbjct: 284 SK-FGDVLWSVSYAKMEAKLQNHESVQFISGLSSSVG-----------KNQFPLSYTTSV 331

Query: 277 SVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLP-DKVDRPPLALPS 335
            + +LR+         +G +   + LP   +      +   + L LP +K     L+LP 
Sbjct: 332 PMVQLRNVKYETLFPRLGFLDEALYLPFQDRKPNQLAIGDGNQLTLPGNKEAEEVLSLPL 391

Query: 336 TETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALC----PIIGFLFYHSKQ 391
            ET I     +  GS  +         GF S     IVL    C     + G  FY  +Q
Sbjct: 392 PETVISQITDIIDGSTKQ--------AGFASKFSGLIVLIFGFCVTMLSVCGLFFYRLRQ 443

Query: 392 VKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNG 451
             S +  E ++++  I   KK +           +K    I      G     SH   N 
Sbjct: 444 --SIRIKEPYVSEVPIATPKKKKSKKNGTTKAVHKKENGFIS-----GGNKDPSH-EENE 495

Query: 452 EKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD 511
           ++ L  F  L +   +G R+GKL V NKEIAKGSNGTVVLEG+YEGR VAVKRLV++HHD
Sbjct: 496 KRLLTAFPGLNNSSAEGYRVGKLFVSNKEIAKGSNGTVVLEGSYEGRLVAVKRLVQSHHD 555

Query: 512 VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAK 571
           VA KEI NL+ASD+H NIVRWYGV+ D+ F+Y+SLE C CSLNDLIY  S   E  + + 
Sbjct: 556 VAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLIYASSALLESPMASS 615

Query: 572 EQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
              S       I++ P+ EN K +ELWK NGHPS  LLK+ R
Sbjct: 616 SIHS-------IQINPIFENGKGVELWKENGHPSPVLLKLMR 650

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420784|ref|NP_568444.1| protein inositol requiring 1-1 [Arabidopsis thaliana] gi|15982747|gb|AAL09714.1| AT5g24360/K16H17_7 [Arabidopsis thaliana] gi|16506693|gb|AAL17714.1| endoribonuclease/protein kinase Ire1p-like protein [Arabidopsis thaliana] gi|332005918|gb|AED93301.1| protein inositol requiring 1-1 [Arabidopsis thaliana]

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 294/582 (50%), Gaps = 51/582 (8%)

Query: 47  EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASE----------FY 96
           E    LV+ +DG+I LVD    K+ W+F T  PIYSSYQA      ++          FY
Sbjct: 45  ESGYVLVSTVDGSISLVDMSSQKLDWTFHTNEPIYSSYQAPHYHYTTDEERSSVLGDDFY 104

Query: 97  LDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGR 156
           +D D+DW LY  S R GK       A E+I  +PY S D  + LG   TSVFL+D K+G+
Sbjct: 105 MDCDKDWRLYNSSVRKGKRVNEIVDASEFIGTLPYTSTDR-IVLGKKDTSVFLLDWKTGK 163

Query: 157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQST 216
           +V  Y +D   S    ++D+ K +V       L  SG    +   +LVYI R D+ +Q  
Sbjct: 164 LVKRYRMDELYSNTVVENDKEKAIVLSKEAPLLFGSGFKKSEDFPELVYIERKDFKIQCI 223

Query: 217 SQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVESHLPCHTQMTA 276
           S+  G+VLW+V+YA  +A+ +  E  +  SG   + G           ++  P     + 
Sbjct: 224 SK-FGDVLWSVSYAKMEAKLQNHESVQFISGLSSSVG-----------KNQFPLSYTTSV 271

Query: 277 SVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDRNSPLFLP-DKVDRPPLALPS 335
            + +LR+         +G +   + LP   +      +   + L LP +K     L+LP 
Sbjct: 272 PMVQLRNVKYETLFPRLGFLDEALYLPFQDRKPNQLAIGDGNQLTLPGNKEAEEVLSLPL 331

Query: 336 TETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVLFIALC----PIIGFLFYHSKQ 391
            ET I     +  GS  +         GF S     IVL    C     + G  FY  +Q
Sbjct: 332 PETVISQITDIIDGSTKQ--------AGFASKFSGLIVLIFGFCVTMLSVCGLFFYRLRQ 383

Query: 392 VKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNG 451
             S +  E ++++  I   KK +           +K    I      G     SH   N 
Sbjct: 384 --SIRIKEPYVSEVPIATPKKKKSKKNGTTKAVHKKENGFIS-----GGNKDPSH-EENE 435

Query: 452 EKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD 511
           ++ L  F  L +   +G R+GKL V NKEIAKGSNGTVVLEG+YEGR VAVKRLV++HHD
Sbjct: 436 KRLLTAFPGLNNSSAEGYRVGKLFVSNKEIAKGSNGTVVLEGSYEGRLVAVKRLVQSHHD 495

Query: 512 VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAK 571
           VA KEI NL+ASD+H NIVRWYGV+ D+ F+Y+SLE C CSLNDLIY  S   E  + + 
Sbjct: 496 VAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLIYASSALLESPMASS 555

Query: 572 EQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
              S       I++ P+ EN K +ELWK NGHPS  LLK+ R
Sbjct: 556 SIHS-------IQINPIFENGKGVELWKENGHPSPVLLKLMR 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	613
TAIR|locus:2053928	841	IRE1A [Arabidopsis thaliana (t	0.318	0.231	0.507	1e-60
ASPGD|ASPL0000060900	1121	AN0235 [Emericella nidulans (t	0.262	0.143	0.343	4.6e-21
CGD|CAL0001725	1224	IRE1 [Candida albicans (taxid:	0.274	0.137	0.306	6.5e-20
UNIPROTKB|Q5A7G9	1224	IRE1 "Likely protein kinase/en	0.274	0.137	0.306	6.5e-20
UNIPROTKB|F1NPU5	946	Gga.10887 "Uncharacterized pro	0.360	0.233	0.266	6.6e-18
ZFIN|ZDB-GENE-090312-15	950	ern2 "endoplasmic reticulum to	0.257	0.166	0.287	1.7e-17
POMBASE|SPAC167.01	1072	ire1 "serine/threonine protein	0.265	0.152	0.337	1.8e-17
UNIPROTKB|F1MM00	949	ERN1 "Uncharacterized protein"	0.215	0.139	0.328	4.5e-16
UNIPROTKB|O75460	977	ERN1 "Serine/threonine-protein	0.141	0.089	0.352	1.1e-15
SGD|S000001121	1115	IRE1 "Serine-threonine kinase	0.176	0.096	0.422	1.9e-15

TAIR|locus:2053928 IRE1A [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
 Identities = 107/211 (50%), Positives = 131/211 (62%)

Query:   404 KTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLID 463
             K G  KKKK+R+   +   TN +     +P     G+ D    I G   + LL F +   
Sbjct:   357 KAGPSKKKKNRK---SAKDTNRQS----VPR----GQ-DQFELIEGG--QMLLGFNNFQS 402

Query:   464 DRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIAS 523
                DGR+IGKL + +KEIAKGSNGTVV EG YEGR VAVKRLV++HH+VA KEIQNLIAS
Sbjct:   403 GATDGRKIGKLFLSSKEIAKGSNGTVVFEGIYEGRPVAVKRLVRSHHEVAFKEIQNLIAS 462

Query:   524 DQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIY-VLSGSFEEQLNAKEQDSNLLNEVR 582
             DQH NI+RWYGVE DQDFVYLSLERCTCSL+DLI   L  S  + L   +    +    +
Sbjct:   463 DQHTNIIRWYGVEYDQDFVYLSLERCTCSLDDLIKSYLEFSMTKVLENNDSTEGVA-AYK 521

Query:   583 IRLLPVMENTKDIELWKANGHPSAQLLKVTR 613
             I+L  +    K    WK  GHPS  +LK+ R
Sbjct:   522 IQLDSLEGVIKGNNFWKVGGHPSPLMLKLMR 552

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IMP

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IMP

GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IGI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

ASPGD|ASPL0000060900 AN0235 [Emericella nidulans (taxid:162425)]

 Score = 209 (78.6 bits), Expect = 4.6e-21, Sum P(2) = 4.6e-21
 Identities = 57/166 (34%), Positives = 87/166 (52%)

Query:   396 KQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDG-LSHITGNGEKF 454
             K  EE   + G  KKKK+R+ G     ++    + I   + +     G L    G     
Sbjct:   604 KDVEELSLQDG-EKKKKTRKRGSRGGKSHRRGKKKIESEKEESDHAPGTLQPPAGPDAGL 662

Query:   455 LLTFTDLIDD-RVDGR-RIGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHD 511
              LT T   +    DG  +IG+L VF  ++   GS+GTVV  G+++GR VAVKR++   +D
Sbjct:   663 ALTRTASNEVFEADGVIQIGRLKVFTADVLGHGSHGTVVYRGSFDGRDVAVKRMLVEFYD 722

Query:   512 VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLI 557
             +A  E+  L  SD H N++R+Y  E  + F Y++LE C  SL D++
Sbjct:   723 IASHEVGLLQESDDHNNVIRYYCREQAKGFFYIALELCPASLQDVV 768

GO:0005524 "ATP binding" evidence=IEA

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0006020 "inositol metabolic process" evidence=IEA

GO:0070055 "HAC1-type intron splice site recognition and cleavage" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0009405 "pathogenesis" evidence=IEA

CGD|CAL0001725 IRE1 [Candida albicans (taxid:5476)]

 Score = 201 (75.8 bits), Expect = 6.5e-20, Sum P(3) = 6.5e-20
 Identities = 54/176 (30%), Positives = 88/176 (50%)

Query:   390 KQVKSKKQNEEHITKTGIPKKKKSRRP-GYNRNTTNSEKMQNIIPNESKVGETDGLSHIT 448
             +Q ++       I +   PKKK+ R   G  R        Q    +E +  +      + 
Sbjct:   679 QQTETDTATITEINEETTPKKKRKRGSRGGRRGGARKNNKQKTNGDEDQEDQQQNDESVV 738

Query:   449 GNG---EKFLLTFTDL--IDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVK 503
                    K L+  + L  I  R   +    LV+ +K +  GS+GTVV +G +E R VAVK
Sbjct:   739 DEEIIPTKSLIPPSSLPAIKSRKKLQIENNLVISDKILGYGSHGTVVFQGTFENRPVAVK 798

Query:   504 RLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FVYLSLERCTCSLNDLI 557
             R++   +D+A  E++ L  SD HPN+VR++  +S +   F+Y++LE C C+L D+I
Sbjct:   799 RMLLDFYDIANHEVRLLQESDDHPNVVRYFCSQSSESEKFLYIALELCLCTLEDII 854

GO:0035690 "cellular response to drug" evidence=IMP

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0006020 "inositol metabolic process" evidence=IEA

UNIPROTKB|Q5A7G9 IRE1 "Likely protein kinase/endoribonuclease Ire1" [Candida albicans SC5314 (taxid:237561)]

 Score = 201 (75.8 bits), Expect = 6.5e-20, Sum P(3) = 6.5e-20
 Identities = 54/176 (30%), Positives = 88/176 (50%)

Query:   390 KQVKSKKQNEEHITKTGIPKKKKSRRP-GYNRNTTNSEKMQNIIPNESKVGETDGLSHIT 448
             +Q ++       I +   PKKK+ R   G  R        Q    +E +  +      + 
Sbjct:   679 QQTETDTATITEINEETTPKKKRKRGSRGGRRGGARKNNKQKTNGDEDQEDQQQNDESVV 738

Query:   449 GNG---EKFLLTFTDL--IDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVK 503
                    K L+  + L  I  R   +    LV+ +K +  GS+GTVV +G +E R VAVK
Sbjct:   739 DEEIIPTKSLIPPSSLPAIKSRKKLQIENNLVISDKILGYGSHGTVVFQGTFENRPVAVK 798

Query:   504 RLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FVYLSLERCTCSLNDLI 557
             R++   +D+A  E++ L  SD HPN+VR++  +S +   F+Y++LE C C+L D+I
Sbjct:   799 RMLLDFYDIANHEVRLLQESDDHPNVVRYFCSQSSESEKFLYIALELCLCTLEDII 854

GO:0035690 "cellular response to drug" evidence=IMP

UNIPROTKB|F1NPU5 Gga.10887 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 6.6e-18, Sum P(3) = 6.6e-18
 Identities = 64/240 (26%), Positives = 114/240 (47%)

Query:   329 PPLALPSTETEIPWTLGMPGGSVSEINKKHAFVEGFRSYIQSFIVL-FIALCPIIGFLFY 387
             PP      E ++   +  P   V  + K  A +      + +F+++ ++A   II +   
Sbjct:   393 PPAVPKDIEEKLAQPVARPEAPVDSMLKDMATI-----ILSTFLIVGWVAF--IIAYPMS 445

Query:   388 HSKQVKSKKQNEEHIT---KTGIPKKKKSRRPGYNRNTTN---SEKMQNIIPNES-KVGE 440
               +Q + + Q EE I    +  +P +  S  P  +   T+   ++      PN S K   
Sbjct:   446 VHQQQQRQHQLEEKIQLLQQQKLPFRAPSDLPPEDFLDTSCGQTDSSATSTPNVSPKASN 505

Query:   441 TDGLSHI-TGNGEKFLLTFTDLIDDRVDGRRIGKLVVFN-KEI-AKGSNGTVVLEGNYEG 497
                 S I T +    L T  +  DD  +   +GK + FN K++   G+ GT+V  G ++ 
Sbjct:   506 HSAYSSISTSDVGSCLSTEQEEGDDDANRVMVGK-ISFNPKDVLGHGAEGTIVYRGTFDN 564

Query:   498 RSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLI 557
             R VAVKR++      A +E+Q L  SD+HPN++R++  E D+ F Y+++E C  +L + +
Sbjct:   565 RDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYV 624

GO:0006397 "mRNA processing" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IEA

ZFIN|ZDB-GENE-090312-15 ern2 "endoplasmic reticulum to nucleus signaling 2" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
 Identities = 48/167 (28%), Positives = 87/167 (52%)

Query:   389 SKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTT-NSEKMQNIIPNESKVGETDGLSHI 447
             S  VK  +++EE +  T +     S    Y+ +T  N+    +   N S+  +T  ++  
Sbjct:   472 SNPVKKSQRSEEPVDSTPL-----SGLTNYSASTELNTPPSTSSYSNSSRSEKTSSVA-- 524

Query:   448 TGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLV 506
             +   + F        D++ D   +GK+     E+   G+ GT V  G+++GR VAVKR++
Sbjct:   525 SNQTQPFSNCDVYSSDEQADVVEVGKISFSPTEVLGHGTEGTFVFRGHFDGRRVAVKRIL 584

Query:   507 KTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSL 553
                 + A +E+Q L  SD+HPN++R++  E D+ F Y+++E C  +L
Sbjct:   585 PECVEFAEREVQLLRESDEHPNVIRYFCTERDRQFTYIAIELCAATL 631

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

POMBASE|SPAC167.01 ire1 "serine/threonine protein kinase, sensor for unfolded proteins in the ER Ire1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 228 (85.3 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
 Identities = 57/169 (33%), Positives = 90/169 (53%)

Query:   390 KQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITG 449
             K  + K+ ++EH   +   + +   +  + +N T     +NI+  + K   TD L     
Sbjct:   573 KGKRRKRVSDEHSASSNFNEIES--QASFEQNQTLDILSENIVEIQDK--STDPLQKSLD 628

Query:   450 NGEKFLLTFTDLIDDRVDGR-RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT 508
             +  K  L    +I +  DG   +  L V+ + I  GS+GT+V  G YE R VAVKR++  
Sbjct:   629 SSLKSHLPEATVIQN-TDGSVTVNSLTVYPEVIGYGSHGTIVYRGVYEDREVAVKRVLME 687

Query:   509 HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLI 557
              +D+A +EI  L  SD HPNIVR+Y  +    F+Y+ +E C C+L+DLI
Sbjct:   688 FYDLASREITLLQQSDNHPNIVRYYCKQKSDQFLYIVIELCKCNLSDLI 736

GO:0004521 "endoribonuclease activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO;IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IGI

UNIPROTKB|F1MM00 ERN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
 Identities = 45/137 (32%), Positives = 72/137 (52%)

Query:   425 SEKMQNIIPNESKVGETDGLSHITGNGEKFLLT-FTDLID-DRVDGRRI-GKLVVFNKEI 481
             SE      P+ S       L H TG   K + + F +  D D   G  I GK+    K++
Sbjct:   500 SESSATSSPSTSPRASNHSL-HSTGCTSKAVTSPFLEQDDEDEETGMVIVGKISFCPKDV 558

Query:   482 -AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD 540
                G+ GT+V  G ++ R VAVKR++      A +E+Q L  SD+HPN++R++  E D+ 
Sbjct:   559 LGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTERDRQ 618

Query:   541 FVYLSLERCTCSLNDLI 557
             F Y+++E C  +L + +
Sbjct:   619 FQYIAIELCAATLQEYV 635

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|O75460 ERN1 "Serine/threonine-protein kinase/endoribonuclease IRE1" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
 Identities = 31/88 (35%), Positives = 55/88 (62%)

Query:   471 IGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
             +GK+    K++   G+ GT+V  G ++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct:   566 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 625

Query:   530 VRWYGVESDQDFVYLSLERCTCSLNDLI 557
             +R++  E D+ F Y+++E C  +L + +
Sbjct:   626 IRYFCTEKDRQFQYIAIELCAATLQEYV 653

GO:0006397 "mRNA processing" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IDA;TAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA;TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA;TAS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0007050 "cell cycle arrest" evidence=ISS

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

SGD|S000001121 IRE1 "Serine-threonine kinase and endoribonuclease" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 211 (79.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 46/109 (42%), Positives = 70/109 (64%)

Query:   474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWY 533
             LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN++R+Y
Sbjct:   673 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYY 732

Query:   534 GVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDS-NLLNEV 581
               E+   F+Y++LE C  +L DL+   + S E     KE +  +LL ++
Sbjct:   733 CSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQI 781

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IMP;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IGI;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006020 "inositol metabolic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	613
cd09213	312	cd09213, Luminal_IRE1_like, The Luminal domain, a	3e-42
cd09769	295	cd09769, Luminal_IRE1, The Luminal domain, a dimer	7e-19
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-10
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-08
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-07
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-07
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-07
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-05
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-05
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	5e-05
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-05
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	8e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	0.001
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	0.002
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	0.002
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	0.002
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.004

>gnl|CDD|188873 cd09213, Luminal_IRE1_like, The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins

 Score =  154 bits (390), Expect = 3e-42
 Identities = 76/204 (37%), Positives = 109/204 (53%), Gaps = 19/204 (9%)

Query: 50  VALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASE----FYLDVDEDWEL 105
           + LVA LDGTI+ VD   G+I+WSF  G P+YSSYQ+S + NA          +D D  L
Sbjct: 1   LLLVATLDGTIYAVDASSGEIQWSFDGGGPLYSSYQSSRDGNAESSSTMLIPSLDGDGNL 60

Query: 106 YFHSKRFGKMKKLSSSAEEYIRRMPYISK---DGGVTLGAMKTSVFLVDVKSGRVVDNYV 162
           Y H K  G +++L  + E+ +   P +S    D  V +G+ +TSVF +D K+G+++  Y 
Sbjct: 61  YQHDKGHGSLQRLPLTIEDLVEASPLVSDTNEDDVVVVGSKRTSVFALDAKTGKIIKTYR 120

Query: 163 LDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGE 222
            D   ST G  SD N    P +  EE             +L+YI RTDYVLQ+    SG+
Sbjct: 121 ADGLPSTGGSDSDGNSTPGPDELQEE------------EELLYIGRTDYVLQAIDPRSGK 168

Query: 223 VLWNVAYADFKAEFRCQEVGKSFS 246
            LWNV Y +++A     +   + S
Sbjct: 169 ELWNVTYGEYEALTLDADELGTSS 192

The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR. Length = 312

>gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain, of the Serine/Threonine protein kinase, Inositol-requiring protein 1

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 15/187 (8%)

Query: 49  DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD-EDWELYF 107
           D+ LV+ +DG +H VD K GKI WS     P+          +       V+  D  LY 
Sbjct: 2   DLLLVSTVDGGLHAVDRKTGKILWSLKAEDPLVEV-PHHSTLSIDGPTFIVEPRDGSLYV 60

Query: 108 HSKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSA 167
            +     +KKL  +  + ++  P  S DG +  G+ +T+ + VD ++G  +       + 
Sbjct: 61  LNPGNEGLKKLPFTIPQLVQSSPCRSSDGILYTGSKQTTWYTVDPRTGEKIQVLGSGGAD 120

Query: 168 STPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNV 227
           S           V P D  +    S           +YI RT+Y +      + E +WNV
Sbjct: 121 SN-----CPESCVDPDDDEQSECSS--------SSTIYIGRTEYTVTIYDSKTREPIWNV 167

Query: 228 AYADFKA 234
            Y+D+  
Sbjct: 168 TYSDYTP 174

The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), a serine/threonine protein kinase (STK) and a type I transmembrane protein that is localized in the endoplasmic reticulum (ER). IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), is a kinase receptor that also contains an endoribonuclease domain in the cytoplasmic side. It plays roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1 acts as an ER stress sensor and is the oldest and most conserved component of the UPR in eukaryotes. During ER stress, IRE1 dimerizes through its luminal domain and forms oligomers, allowing the kinase domain to undergo trans-autophosphorylation. This leads to a conformational change that stimulates its endoribonuclease activity and results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. Mammals contain two IRE1 proteins, IRE1alpha (or ERN1) and IRE1beta (or ERN2). IRE1alpha is expressed in all cells and tissues while IRE1beta is found only in intestinal epithelial cells. Length = 295

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 481 IAKGSNGTVVL-EGNYEGRSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGV 535
           + +G  GTV L      G+ VA+K + K    +  +  L+EI+ L     HPNIV+ YGV
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEIL-KKLNHPNIVKLYGV 59

Query: 536 ESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQL 568
             D++ +YL +E C   SL DL+    G   E  
Sbjct: 60  FEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDE 93

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHD----VALKEIQNLIASDQHPNIVRWY 533
           K++  G+ G+V L  N E G  VA+K++ K  +     + L+E+++L   ++HPNIV+  
Sbjct: 5   KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLK 64

Query: 534 GVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIR 584
            V  + D +Y   E    +L  L+             K++     +E  IR
Sbjct: 65  EVFRENDELYFVFEYMEGNLYQLM-------------KDRKGKPFSESVIR 102

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV----ALKEIQNLIASDQHPNIVRWY 533
           +++ +GS G V L      G+ VA+K + K          L+EI+ L     HPNIVR Y
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLK-HPNIVRLY 63

Query: 534 GVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
            V  D+D +YL +E C    L DL+    G   E 
Sbjct: 64  DVFEDEDKLYLVMEYCEGGDLFDLL-KKRGRLSED 97

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 476 VFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNI 529
              +++  GS GTV    +   G+ VAVK L K          A +EI+ L     HPNI
Sbjct: 2   ELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRIL-RRLSHPNI 60

Query: 530 VRWYGVESDQDFVYLSLERC-TCSLNDLIYVLSGSFEE 566
           VR      D+D +YL +E C    L D +    G   E
Sbjct: 61  VRLIDAFEDKDHLYLVMEYCEGGDLFDYL-SRGGPLSE 97

Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 16/99 (16%)

Query: 479 KEIAKGSNGTVVLEGNYEGRS------VAVKRL---VKTHHDVALKEIQNLIASDQHPNI 529
           ++I KG  G V     Y+ R       VA+K +    K   +  + EIQ ++   +HPNI
Sbjct: 6   EKIGKGGFGEV-----YKARHKRTGKEVAIKVIKLESKEKKEKIINEIQ-ILKKCKHPNI 59

Query: 530 VRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           V++YG    +D +++ +E C+  SL DL+   + +  E 
Sbjct: 60  VKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTES 98

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVA--LKEIQNLIA---SDQHPNIVRW 532
           + + +GS G+V L      G  +AVK  V+   D    L+ ++  I    S QHPNIVR+
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKS-VELSGDSEEELEALEREIRILSSLQHPNIVRY 64

Query: 533 YGVESD--QDFVYLSLERCTC-SLNDLIYVLSGSFEEQL 568
           YG E D  ++ + + LE  +  SL+ L+    G   E +
Sbjct: 65  YGSERDEEKNTLNIFLEYVSGGSLSSLLK-KFGKLPEPV 102

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)

Query: 480 EIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDV-ALKEIQ---NLIASDQHPNIVRWYG 534
            I +G+ G V    N E G  VA+K++        ALK I    +L+ + +HPNIV++ G
Sbjct: 7   LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIG 66

Query: 535 VESDQDFVYLSLERCTCSLNDLIYVLSGS 563
                D +Y+ LE          Y  +GS
Sbjct: 67  SIETSDSLYIILE----------YAENGS 85

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRS------VAVKRLVKTHHDVALKEIQN---LIASDQ 525
           +   K++ +G+ G  V +G  +G+       VAVK L +   +  ++E      ++    
Sbjct: 1   LTLGKKLGEGAFG-EVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLD 59

Query: 526 HPNIVRWYGVESDQDFVYLSLE 547
           HPN+V+  GV ++++ +Y+ +E
Sbjct: 60  HPNVVKLLGVCTEEEPLYIVME 81

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 475 VVFNKEIAKGSNGTVVL-----EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQH 526
           +   K++ +G+ G V       +G+ +   VAVK L +   +  ++E      ++    H
Sbjct: 1   LTLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDH 60

Query: 527 PNIVRWYGVESDQDFVYLSLE 547
           PNIV+  GV ++++ + + +E
Sbjct: 61  PNIVKLLGVCTEEEPLMIVME 81

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDVALKEIQNLIASDQ---HPNIVRWYG 534
           + I  G+ G V    +   G  VA+K ++K       + IQ  I+  +   HPNIV ++G
Sbjct: 9   QRIGSGTYGDVYKARDIATGELVAIK-VIKLEPGDDFEIIQQEISMLKECRHPNIVAYFG 67

Query: 535 VESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNA 570
               +D +++ +E C   SL D+  V  G   E   A
Sbjct: 68  SYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIA 104

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 44.8 bits (107), Expect = 6e-05
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 475 VVFNKEIAKGSNGTVVL-----EGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASDQ 525
           +   K++ +G+ G V       +G      VAVK L +   +      L+E   +     
Sbjct: 1   LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS- 59

Query: 526 HPNIVRWYGVESDQDFVYLSLERCTC-SLND 555
           HPNIVR  GV +  + +Y+  E      L D
Sbjct: 60  HPNIVRLLGVCTQGEPLYIVTEYMPGGDLLD 90

Length = 258

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASD------QHPN 528
           +     I KG  G V + G+Y G+ VAVK L K          Q  +A        +HPN
Sbjct: 8   LKLGATIGKGEFGDV-MLGDYRGQKVAVKCL-KDD----STAAQAFLAEASVMTTLRHPN 61

Query: 529 IVRWYGVESDQDFVYLSLERC 549
           +V+  GV    + +Y+  E  
Sbjct: 62  LVQLLGVVLQGNPLYIVTEYM 82

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 481 IAKGSNGTVVLEGNYE-GRSVAVKRL-VKTHHD----VALKEIQNLIASDQHPNIVRWYG 534
           I +G++G V    + E G +VA+K++ ++         AL+EI+ L A  QHP +V+   
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC-QHPYVVKLLD 66

Query: 535 VESDQDFVYLSLERCTCSLNDLI 557
           V        L +E     L++++
Sbjct: 67  VFPHGSGFVLVMEYMPSDLSEVL 89

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVK--RLVKTHHDVALKEIQ---NLIASDQHPNIVRW 532
            +I  G+ G V    N + G  +AVK  R+        +KEI     ++   +HPN+V++
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPK-TIKEIADEMKVLELLKHPNLVKY 64

Query: 533 YGVESDQDFVYLSLERC 549
           YGVE  ++ VY+ +E C
Sbjct: 65  YGVEVHREKVYIFMEYC 81

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKR-----LVKTHHDVALKEIQNLIASDQHPNIVRW 532
           K+I KGS G V L     +G+   +K      + +   + AL E++ ++    HPNI+++
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVK-ILKKLNHPNIIKY 64

Query: 533 YGVESDQDFVYLSLERCTC-SLNDLI 557
           Y    ++  + + +E      L+  I
Sbjct: 65  YESFEEKGKLCIVMEYADGGDLSQKI 90

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 40.5 bits (93), Expect = 0.002
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDV------ALKEIQNLIASDQHPNIVRW 532
           +++ +GS G V L    + + VA+K L K            L+EIQ L + +  PNIV+ 
Sbjct: 6   RKLGEGSFGEVYL--ARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKL 63

Query: 533 YGVESDQDFVYLSLERCTC-SLNDLI 557
           Y    D+  +YL +E     SL DL+
Sbjct: 64  YDFFQDEGSLYLVMEYVDGGSLEDLL 89

Length = 384

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 22/113 (19%)

Query: 481 IAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDV----ALKEIQ---NLIASDQHPNIVRW 532
           +  GS G+V    N + G   AVK +           A+K+++    L++  QHPNIV++
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRL 585
            G E ++D +Y+ LE           V  GS  + L    +      E  IRL
Sbjct: 68  LGTEREEDNLYIFLE----------LVPGGSLAKLL----KKYGSFPEPVIRL 106

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	613
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.86
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.85
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.83
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.8
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
KOG0605	550	consensus NDR and related serine/threonine kinases	99.76
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.75
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.75
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.74
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.74
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.74
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.73
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.73
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.73
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.73
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.72
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.72
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.7
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.7
KOG0198	313	consensus MEKK and related serine/threonine protei	99.7
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.69
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.69
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.69
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.69
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.69
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.68
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.68
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.68
KOG0610	459	consensus Putative serine/threonine protein kinase	99.68
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.67
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.66
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.66
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.66
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.66
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.66
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.66
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.65
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.65
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.65
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.65
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.65
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	99.64
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.64
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.64
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.64
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.63
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	99.63
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.63
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.63
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.62
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.62
KOG3653	534	consensus Transforming growth factor beta/activin	99.62
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.62
KOG0578	550	consensus p21-activated serine/threonine protein k	99.62
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.62
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.62
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.62
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.62
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.62
PTZ00036	440	glycogen synthase kinase; Provisional	99.62
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.62
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.61
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.61
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.61
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.61
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.61
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.61
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.61
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.61
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.61
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.61
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.6
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.6
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.6
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.6
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.6
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.6
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.6
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.59
KOG0586	596	consensus Serine/threonine protein kinase [General	99.59
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.59
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.59
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.59
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.59
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.59
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.58
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.58
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.58
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.58
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.58
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.58
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.58
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.58
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.58
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.58
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.58
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.58
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.58
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.58
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.58
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.57
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.57
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.57
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.57
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.57
COG1520	370	FOG: WD40-like repeat [Function unknown]	99.57
PHA03212	391	serine/threonine kinase US3; Provisional	99.57
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.56
KOG1152	772	consensus Signal transduction serine/threonine kin	99.56
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.56
PTZ00267	478	NIMA-related protein kinase; Provisional	99.56
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.56
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.56
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.56
KOG0589	426	consensus Serine/threonine protein kinase [General	99.56
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.56
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.56
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.56
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.56
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.55
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.55
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.55
PHA03211	461	serine/threonine kinase US3; Provisional	99.55
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.55
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.55
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.55
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.55
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.55
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.55
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.55
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.55
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.54
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.54
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.54
PHA03207	392	serine/threonine kinase US3; Provisional	99.54
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.54
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.54
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.53
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.53
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.53
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.53
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.53
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.53
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.53
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.53
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.53
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.53
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.53
COG1520	370	FOG: WD40-like repeat [Function unknown]	99.53
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.52
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.52
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.52
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.52
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.52
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.52
PLN00009	294	cyclin-dependent kinase A; Provisional	99.52
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.52
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.52
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.52
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.52
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.51
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.51
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.51
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.51
PTZ00283	496	serine/threonine protein kinase; Provisional	99.51
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.51
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.51
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.51
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.51
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.51
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.51
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	99.5
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.5
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.5
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.5
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.5
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.5
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.5
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.5
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.5
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.5
PHA03209	357	serine/threonine kinase US3; Provisional	99.5
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.5
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.49
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.49
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.49
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.49
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.49
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.49
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.49
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.49
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.49
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.49
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.49
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.49
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.49
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.49
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.49
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.48
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.48
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.48
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.48
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.48
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.48
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.48
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.48
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.48
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.48
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.48
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.48
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.48
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.48
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.47
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.47
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.47
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.47
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.47
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.47
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.47
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.47
PTZ00284	467	protein kinase; Provisional	99.47
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.47
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.47
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.47
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.47
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.47
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.47
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.46
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.46
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.46
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.46
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.46
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.46
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.46
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.46
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.46
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.46
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.46
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.46
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.46
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.45
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.45
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.45
PHA02988	283	hypothetical protein; Provisional	99.45
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.45
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.45
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.45
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.45
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.45
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.45
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.45
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.45
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.45
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.45
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.45
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.45
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.45
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.45
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.45
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.45
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.45
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.45
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.45
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.45
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.45
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.45
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.44
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.44
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.44
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.44
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.44
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.44
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.44
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.44
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.44
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.44
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.44
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.44
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.43
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.43
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.43
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.43
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.43
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.43
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.43
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.43
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.43
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.43
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.43
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.43
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.43
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.43
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.43
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.43
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.42
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.42
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.42
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.42
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.42
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.42
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.42
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.42
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.42
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.42
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.42
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.42
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.42
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.42
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.42
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.42
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.42
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.42
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.41
PRK09188	365	serine/threonine protein kinase; Provisional	99.41
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.41
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.41
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.41
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.41
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.41
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.41
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.41
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.41
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.41
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.4
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.4
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.4
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.4
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.4
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.4
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.4
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.4
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.4
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.4
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.4
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.39
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.39
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.39
KOG0584	632	consensus Serine/threonine protein kinase [General	99.38
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.38
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.38
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.38
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.38
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.38
PRK10345	210	hypothetical protein; Provisional	99.38
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.37
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.37
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.37
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.37
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.37
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.37
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.37
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.37
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.37
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.36
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.36
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.36
PHA03210	501	serine/threonine kinase US3; Provisional	99.36
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.36
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.36
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.36
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.36
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.36
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.36
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.35
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.35
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.35
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.35
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.35
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.35
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.35
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.34
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.34
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.34
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.34
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.33
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.33
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.33
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.33
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.33
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.32
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.32
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.32
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	99.31
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.3
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.3
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.3
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.3
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.3
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.29
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.28
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.28
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.28
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.28
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.27
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.26
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.26
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.25
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.25
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.24
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.22
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.21
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.2
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.18
PHA02882	294	putative serine/threonine kinase; Provisional	99.17
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.17
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.17
PRK12274	218	serine/threonine protein kinase; Provisional	99.15
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.15
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.15
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.14
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.12
PRK14879	211	serine/threonine protein kinase; Provisional	99.08
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.05
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.03
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.03
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.02
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.02
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.01
smart00090	237	RIO RIO-like kinase.	98.99
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.99
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.96
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.95
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.94
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.92
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.9
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.79
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.78
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.77
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	98.69
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.69
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.59
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.58
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.55
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	98.53
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	98.34
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.3
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	98.19
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	98.08
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.02
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	97.93
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	97.91
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	97.76
PLN00181	793	protein SPA1-RELATED; Provisional	97.73
KOG0296	399	consensus Angio-associated migratory cell protein	97.69
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.61
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.6
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	97.6
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	97.59
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.59
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.59
KOG3087	229	consensus Serine/threonine protein kinase [General	97.57
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.51
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.5
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.37
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.36
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.27
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.11
KOG0649	325	consensus WD40 repeat protein [General function pr	97.11
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.06
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.04
KOG1243	690	consensus Protein kinase [General function predict	97.03
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.02
PLN00181	793	protein SPA1-RELATED; Provisional	97.0
KOG0296	399	consensus Angio-associated migratory cell protein	96.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.86
PRK09902	216	hypothetical protein; Provisional	96.85
PTZ00421	493	coronin; Provisional	96.65
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.63
PTZ00420	568	coronin; Provisional	96.6
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	96.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.55
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.53
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.43
KOG0643	327	consensus Translation initiation factor 3, subunit	96.41
KOG0649	325	consensus WD40 repeat protein [General function pr	96.27
KOG2055	514	consensus WD40 repeat protein [General function pr	96.22
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.2
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.19
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.15
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.11
PRK05137	435	tolB translocation protein TolB; Provisional	96.11
PTZ00421	493	coronin; Provisional	96.05
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.02
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.01
PRK04922	433	tolB translocation protein TolB; Provisional	95.99
PRK04792	448	tolB translocation protein TolB; Provisional	95.98
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	95.97
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	95.93
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	95.9

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-38  Score=340.21  Aligned_cols=184  Identities=24%  Similarity=0.413  Sum_probs=156.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ++++.+++|.| .++|.+..+|.+.|+... .|+..+.....    ...|+.++.||+||.+.. .+.+.|+||+++++|
T Consensus        26 ~e~~~~~stid-~l~a~s~~~g~~~~~l~~-~pvv~~~~~~~----~~~fl~~p~dgsly~l~~-~~sL~Klpftipelv   98 (903)
T KOG1027|consen   26 DENLLLVSTID-SLHAPSSETGFIKWTLSD-DPVVASPDGVL----QPAFLPDPRDGSLYTLGN-NLSLTKLPFTIPELV   98 (903)
T ss_pred             ccccccccccc-cccCccccccceeeeecc-CccccCCcccc----ccccCCCccccceeeccC-CCccccCCccchhhh
Confidence            44789999999 999999999999999964 45544422211    257899999999999977 567889999999999


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEE
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYI  206 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  206 (613)
                      ..+||+++||++|.|++++.||.||++||+..|+|++..++                                 ...||+
T Consensus        99 ~~~pcrssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~---------------------------------~~~v~~  145 (903)
T KOG1027|consen   99 NASPCRSSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPI---------------------------------KQLVYL  145 (903)
T ss_pred             ccCcccCCCCeEEecccccceEEecCCccceeEEEecCCcc---------------------------------hhheec
Confidence            99999999999999999999999999999999999876532                                 238999


Q ss_pred             EeeeeEEEEEeCCCCceEEEEEeceeeeeecccccCCCcccccccC-CCcccccc-------cCcccccccc
Q 007199          207 MRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNS-GSELGMDL-------IGDVESHLPC  270 (613)
Q Consensus       207 gr~d~~l~a~d~~~G~~~Wn~t~~~~~a~~~~~~~~~~~~~~~~~s-~~~~~~~~-------~g~~~~~~~~  270 (613)
                      |||.|+|.+.|+++-...||+|+.+|.|.++.....+.++.+|.++ |+++++|.       .|+..+|+.-
T Consensus       146 grt~ytv~m~d~~~~~~~wn~t~~dy~a~~~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv~  217 (903)
T KOG1027|consen  146 GRTNYTVTMYDKNVRGKTWNTTFGDYSAQYPSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVVA  217 (903)
T ss_pred             ccceeEEecccCcccCceeeccccchhccCCCccCCceeEEEeecCCccEEeccCcccceeeccccCCceEE
Confidence            9999999999999999999999999999999999988888444444 89999887       5666666554

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.86  E-value=2.7e-21  Score=197.84  Aligned_cols=115  Identities=28%  Similarity=0.369  Sum_probs=99.9

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |...+.||+|+||+||+| ++.++..||||++.+.     ..+.+..|+.+|+.+ +|||||+++++++.++++||||||
T Consensus        12 y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel-~H~nIV~l~d~~~~~~~i~lVMEy   90 (429)
T KOG0595|consen   12 YELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKEL-KHPNIVRLLDCIEDDDFIYLVMEY   90 (429)
T ss_pred             ceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhc-CCcceeeEEEEEecCCeEEEEEEe
Confidence            888888999999999997 5788899999999875     455788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |. |||.+||+.++      .+++..+..++.   .||++||+++|||||||
T Consensus        91 C~gGDLs~yi~~~~------~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLK  136 (429)
T KOG0595|consen   91 CNGGDLSDYIRRRG------RLPEATARHFMQQLASALQFLHENNIIHRDLK  136 (429)
T ss_pred             CCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC
Confidence            99 79999999754      455555555444   89999999999988877

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.85  E-value=1.2e-20  Score=203.91  Aligned_cols=185  Identities=17%  Similarity=0.185  Sum_probs=125.5

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc--eeecc---c--cccCCCCCeEEEecCCCCeEEEEecCCCce
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP--IYSSY---Q--ASFNSNASEFYLDVDEDWELYFHSKRFGKM  115 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~--i~s~~---~--~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l  115 (613)
                      ++.+.++.||+++.+|.|+|+|+.||+++|+++.+..  +.+..   .  .......+.+|+ ++.||.||++|+++|++
T Consensus        64 sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v-~~~~g~l~ald~~tG~~  142 (394)
T PRK11138         64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYI-GSEKGQVYALNAEDGEV  142 (394)
T ss_pred             ccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEE-EcCCCEEEEEECCCCCC
Confidence            3457899999999999999999999999999987541  11110   0  001111234555 45699999999999999


Q ss_pred             eeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCC-----CCCCCcCCCCCccccCCCccccc
Q 007199          116 KKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSA-----STPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       116 ~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                       .|.+.++..+.++|++. |+.||+++.++.+|++|++||+++|++..+.+.     .++|...++.......++....+
T Consensus       143 -~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~  220 (394)
T PRK11138        143 -AWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAV  220 (394)
T ss_pred             -cccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEE
Confidence             99999999899999999 889999999999999999999999999865321     13444332211111111100000


Q ss_pred             ccc-------------------------cccccccccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          191 ESG-------------------------VGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       191 ~~~-------------------------~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      ++.                         ...|...++.||++..++.++|+|+.+|+++|+..++
T Consensus       221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            000                         0112223567777777777777777777777776544

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=4.9e-20  Score=188.49  Aligned_cols=124  Identities=23%  Similarity=0.201  Sum_probs=102.1

Q ss_pred             cccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc----------chHHHHHHHHHHHhcCCCCcceeEEEEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT----------HHDVALKEIQNLIASDQHPNIVRWYGVES  537 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~----------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~  537 (613)
                      ..+.+.|.+.+.||+|+||.|-+| .+.+|+.||||++.+.          ......+|+++|+++ +|||||+++++|.
T Consensus       168 ks~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL-~HP~IV~~~d~f~  246 (475)
T KOG0615|consen  168 KSFNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKL-SHPNIVRIKDFFE  246 (475)
T ss_pred             chhcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhc-CCCCEEEEeeeee
Confidence            345577999999999999999998 6899999999999862          112467999999999 9999999999999


Q ss_pred             eCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          538 DQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 ~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+..||||||+. |+|++++-.++   ....-.-....++++.|+.|||+++|+|||||
T Consensus       247 ~~ds~YmVlE~v~GGeLfd~vv~nk---~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiK  303 (475)
T KOG0615|consen  247 VPDSSYMVLEYVEGGELFDKVVANK---YLREDLGKLLFKQLLTAVKYLHSQGIIHRDIK  303 (475)
T ss_pred             cCCceEEEEEEecCccHHHHHHhcc---ccccchhHHHHHHHHHHHHHHHHcCcccccCC
Confidence            9999999999999 69999998654   11111224455666699999999999988876

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=2.4e-19  Score=190.25  Aligned_cols=118  Identities=25%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             CceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-EEEEEec
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQD-FVYLSLE  547 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~~~LV~E  547 (613)
                      .+.|...+.||+|+||.||++...+|+.||||++....   ..+|.+|+++|.++ +|||+|+|+|||.+.+ +.+||||
T Consensus        74 T~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l-~H~Nlv~LlGyC~e~~~~~~LVYE  152 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRL-RHPNLVKLLGYCLEGGEHRLLVYE  152 (361)
T ss_pred             HhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcC-CCcCcccEEEEEecCCceEEEEEE
Confidence            35688889999999999999999999999999988733   46799999999888 8999999999999999 5999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH-----HHHHHHhcCC---ceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN-----EVRIRLLPVM---ENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~-----~~l~~Lh~~~---iiHrDlK  596 (613)
                      ||+ |+|.++|+...    ..  +++|..|+-+     .||+|||...   |||||||
T Consensus       153 ym~nGsL~d~L~~~~----~~--~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiK  204 (361)
T KOG1187|consen  153 YMPNGSLEDHLHGKK----GE--PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIK  204 (361)
T ss_pred             ccCCCCHHHHhCCCC----CC--CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCC
Confidence            999 99999998642    11  5589888887     8999999854   6666665

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=6.1e-19  Score=188.74  Aligned_cols=123  Identities=26%  Similarity=0.279  Sum_probs=105.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...+.||+|+|+.+|.+. ..+|+.||+|++.+      ..++.+.+||++.+.+ +|||||+++++|++.+++|||
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L-~HpnIV~f~~~FEDs~nVYiv   96 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSL-KHPNIVQFYHFFEDSNNVYIV   96 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhc-CCCcEEeeeeEeecCCceEEE
Confidence            459999999999999999975 59999999999986      3455899999999877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|+|. |+|..+++..      ..+.+..++.++.   .||.|||+.+|||||||    ||+++.
T Consensus        97 LELC~~~sL~el~Krr------k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~  155 (592)
T KOG0575|consen   97 LELCHRGSLMELLKRR------KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENM  155 (592)
T ss_pred             EEecCCccHHHHHHhc------CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcC
Confidence            99999 9999999843      2455555555544   89999999999999999    666653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.78  E-value=4.2e-18  Score=182.77  Aligned_cols=184  Identities=17%  Similarity=0.155  Sum_probs=131.5

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      +.+.+.++.||+++.+|.|||+|+.||+++|+++.+..+.++.   .. +.+.+|+ ++.||.||++|..+|++ +|...
T Consensus        59 ~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p---~v-~~~~v~v-~~~~g~l~ald~~tG~~-~W~~~  132 (377)
T TIGR03300        59 LQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV---GA-DGGLVFV-GTEKGEVIALDAEDGKE-LWRAK  132 (377)
T ss_pred             cceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce---EE-cCCEEEE-EcCCCEEEEEECCCCcE-eeeec
Confidence            3456789999999999999999999999999999988776551   11 2224554 55599999999999999 99999


Q ss_pred             HHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCC-----CCCCCcCCCCCccccCCCcccccccc---
Q 007199          122 AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSA-----STPGFQSDENKHVVPVDGYEELVESG---  193 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---  193 (613)
                      ++..+.++|++. ++.||+++.++.+|++|++||+++|++......     .++|...++.-.....++....+++.   
T Consensus       133 ~~~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       133 LSSEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             cCceeecCCEEE-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCC
Confidence            998888999998 888999999999999999999999999865432     12333322211111111111111110   


Q ss_pred             ----------------------cccccccccEEEEEeeeeEEEEEeCCCCceEEEEEecee
Q 007199          194 ----------------------VGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       194 ----------------------~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                                            ...|...++.||++..++.|+|+|.++|+++|+.....+
T Consensus       212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~  272 (377)
T TIGR03300       212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY  272 (377)
T ss_pred             EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc
Confidence                                  001112356788888888888888888888888765443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=4.1e-18  Score=204.42  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=87.3

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      +...++||+|+||.||++. ..++..||||++..... ....|++.|.++ +|||||+++++|.+.+..|+|||||+ |+
T Consensus       692 ~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~l~~l-~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~  769 (968)
T PLN00113        692 LKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-IPSSEIADMGKL-QHPNIVKLIGLCRSEKGAYLIHEYIEGKN  769 (968)
T ss_pred             CCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc-ccHHHHHHHhhC-CCCCcceEEEEEEcCCCCEEEEeCCCCCc
Confidence            4556789999999999985 57899999999875322 224567778777 99999999999999999999999999 79


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHh---cCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLL---PVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh---~~~iiHrDlK  596 (613)
                      |.++++..      .......++..++.|+.|||   ..+++|||+|
T Consensus       770 L~~~l~~l------~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlk  810 (968)
T PLN00113        770 LSEVLRNL------SWERRRKIAIGIAKALRFLHCRCSPAVVVGNLS  810 (968)
T ss_pred             HHHHHhcC------CHHHHHHHHHHHHHHHHHhccCCCCCeecCCCC
Confidence            99999631      11111223333448999999   5677777776

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.76  E-value=2.5e-18  Score=181.43  Aligned_cols=124  Identities=23%  Similarity=0.252  Sum_probs=109.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|+..++||+|+||.||+|. +.+|..+|+|+++++      ..+.+..|-.+|... ++|+||+||-.|++.+++|||
T Consensus       141 ~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~-ds~~vVKLyYsFQD~~~LYLi  219 (550)
T KOG0605|consen  141 DDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEV-DSPWVVKLYYSFQDKEYLYLI  219 (550)
T ss_pred             ccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhc-CCCcEEEEEEEecCCCeeEEE
Confidence            569999999999999999985 789999999999973      344678888888775 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |||++ ||+..+|.      ....++++|+..++.   .|+..||+.++||||||    |++++||
T Consensus       220 MEylPGGD~mTLL~------~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GH  279 (550)
T KOG0605|consen  220 MEYLPGGDMMTLLM------RKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGH  279 (550)
T ss_pred             EEecCCccHHHHHH------hcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCC
Confidence            99999 69999998      455889999988887   79999999999999988    7777775

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.1e-18  Score=182.75  Aligned_cols=124  Identities=23%  Similarity=0.217  Sum_probs=102.4

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccch-----HHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHH-----DVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~-----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~L  544 (613)
                      +.|+..+.||+|.||.||+| +..+|+.||+|+++....     ....+||.+|+++ +||||++|.+.....  ..+||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l-~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRL-DHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhc-CCCcccceeeEEEecCCceEEE
Confidence            44788889999999999997 589999999999986432     2678999999888 999999999998877  68999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|||+-||.-++...     .-.+.+.++   +++++.||+|||.++|+|||||    |++.+|
T Consensus       196 VFeYMdhDL~GLl~~p-----~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G  255 (560)
T KOG0600|consen  196 VFEYMDHDLSGLLSSP-----GVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNG  255 (560)
T ss_pred             EEecccchhhhhhcCC-----CcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCC
Confidence            9999999999999753     223444444   5555599999999999998888    666665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.75  E-value=7.8e-18  Score=181.89  Aligned_cols=179  Identities=12%  Similarity=0.137  Sum_probs=132.4

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      +.+.++.||+++.+|.|||+|+.||+++|+++.++++.+++.   ..+ +.+|+ ++.||.||++|+++|++ .|.++..
T Consensus       116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~---v~~-~~v~v-~~~~g~l~ald~~tG~~-~W~~~~~  189 (394)
T PRK11138        116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPV---VSD-GLVLV-HTSNGMLQALNESDGAV-KWTVNLD  189 (394)
T ss_pred             cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCE---EEC-CEEEE-ECCCCEEEEEEccCCCE-eeeecCC
Confidence            345789999999999999999999999999999888776622   111 23454 55599999999999999 9999765


Q ss_pred             HH-----hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCC-----------CCCCCCcCCCCCccccCCCcc
Q 007199          124 EY-----IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFS-----------ASTPGFQSDENKHVVPVDGYE  187 (613)
Q Consensus       124 ~~-----v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  187 (613)
                      ..     ..++|++. ++.+|+|+.++.++++|+.||+++|++....+           ..++|+..++.-+.+..++..
T Consensus       190 ~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        190 VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence            32     24789998 77899999999999999999999999875432           124555444333322223333


Q ss_pred             ccccccccc------------ccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          188 ELVESGVGN------------LKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       188 ~~~~~~~~~------------~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      .+++...-.            +...++.||++..|+.|+|+|+++|+++|+...
T Consensus       269 ~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~  322 (394)
T PRK11138        269 VALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD  322 (394)
T ss_pred             EEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence            333322111            112467999999999999999999999998653

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.75  E-value=6.9e-18  Score=171.49  Aligned_cols=124  Identities=23%  Similarity=0.134  Sum_probs=105.8

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.++||+|+||+||.+ ...+++.+|+|.|++.      ..+...+|..+|.+. +||.||+++-.|++.+.+|||
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v-~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKI-KHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhC-CCCcEeeeEEecccCCeEEEE
Confidence            45999999999999999996 4788999999999872      345788999999886 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      +||+. |+|+.+|++.      ..+.++.+.-+++   .||.|||+++|||||+|    ||+.+||
T Consensus       104 ld~~~GGeLf~hL~~e------g~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GH  163 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQRE------GRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGH  163 (357)
T ss_pred             EeccCCccHHHHHHhc------CCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCc
Confidence            99999 6999999854      4566776666666   89999999999998887    5555554

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.74  E-value=1.6e-18  Score=182.89  Aligned_cols=122  Identities=20%  Similarity=0.159  Sum_probs=105.1

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccchH-----HHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~-----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|.+.+.||+|+||.|||+ ++++.+.||+|.+.+..+.     .+.+|++++.++ +|||||.++++|+...++++|.|
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~l-kHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSL-KHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhc-CCcchhhHHHhhcccceEEEEeh
Confidence            3778889999999999997 5788999999999875443     489999999888 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||.|+|..+|...      ..++++.+..+..   .||.|||+.+|+||       |++|+||||
T Consensus        82 ~a~g~L~~il~~d------~~lpEe~v~~~a~~LVsaL~yLhs~rilhr-------d~kPqniLl  133 (808)
T KOG0597|consen   82 YAVGDLFTILEQD------GKLPEEQVRAIAYDLVSALYYLHSNRILHR-------DMKPQNILL  133 (808)
T ss_pred             hhhhhHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhcCcccc-------cCCcceeee
Confidence            9999999999854      4677877777666   89999999999655       556777776

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.74  E-value=9.5e-18  Score=170.54  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=100.2

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-EEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQD-FVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~~~LV~E~  548 (613)
                      ++..++||+|..|+|||+ ++.+++.+|+|.+..    +...++.+|++++.+. +||+||++||+|..+. .++|+|||
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~-~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSC-QSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhC-CCCCeeeEeEEEEeCCceEEeehhh
Confidence            677889999999999997 689999999999953    3445889999999988 9999999999999999 59999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccceecCCCcCcceee
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlKllh~dg~PsniLl  609 (613)
                      |. |||.++++..      ..+++....++..   +||.|||. .+||||||       ||||||+
T Consensus       160 MDgGSLd~~~k~~------g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDI-------KPsNlLv  212 (364)
T KOG0581|consen  160 MDGGSLDDILKRV------GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDI-------KPSNLLV  212 (364)
T ss_pred             cCCCCHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccC-------CHHHeee
Confidence            99 7999999853      3456655555544   99999995 77766555       5777766

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.74  E-value=1.9e-18  Score=170.59  Aligned_cols=122  Identities=22%  Similarity=0.226  Sum_probs=99.7

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccch-----HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHH-----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~-----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+...++|+|+||.|||| .+.+|+.||||++..+..     +-..+||++|+++ +|+|+|.|+++|.....++||+||
T Consensus         4 YE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqL-kH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    4 YEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQL-KHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHhcceeEEEeee
Confidence            667778999999999998 489999999999986433     2578999999888 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      |+-++.+-|...     ...++...+..++.   .|++|+|++++||||||       |+|||+
T Consensus        83 ~dhTvL~eLe~~-----p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIK-------PENILi  134 (396)
T KOG0593|consen   83 CDHTVLHELERY-----PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIK-------PENILI  134 (396)
T ss_pred             cchHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCC-------hhheEE
Confidence            998877777764     33455555544443   89999999999887765       666655

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.73  E-value=5e-18  Score=165.05  Aligned_cols=123  Identities=20%  Similarity=0.195  Sum_probs=100.3

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccch-----HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHH-----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~-----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +|...+.||+|.||.||+| +..+|+.||||+++....     -...+||..|+.+ +|+||+.++++|-..+.+.||+|
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel-~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQEL-KHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHc-cCcchhhhhhhccCCCceEEEEE
Confidence            3677789999999999997 588999999999986322     2688999999888 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||+-+|...|+...     -.+.-..+..+   ...|++|||++.|+|||+|    |+..||
T Consensus        82 fm~tdLe~vIkd~~-----i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g  138 (318)
T KOG0659|consen   82 FMPTDLEVVIKDKN-----IILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDG  138 (318)
T ss_pred             eccccHHHHhcccc-----cccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCC
Confidence            99999999998642     23333333333   3389999999999888877    445444

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.73  E-value=2.1e-17  Score=174.66  Aligned_cols=116  Identities=22%  Similarity=0.241  Sum_probs=95.9

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcE-EEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-EEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRS-VAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQD-FVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~-VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~~~LV~E  547 (613)
                      +...+.||+|+||+||+ ..+.|+. ||||++....     .+.|.+|+.+|.++ +|||||+++|+|.... ..+||||
T Consensus        43 l~~~~~iG~G~~g~V~~-~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l-~HpNIV~f~G~~~~~~~~~~iVtE  120 (362)
T KOG0192|consen   43 LPIEEVLGSGSFGTVYK-GKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRL-RHPNIVQFYGACTSPPGSLCIVTE  120 (362)
T ss_pred             hhhhhhcccCCceeEEE-EEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhC-CCCCeeeEEEEEcCCCCceEEEEE
Confidence            55666799999999997 5667777 9999998633     45899999999887 9999999999999988 7999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC-ceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM-ENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~-iiHrDlK  596 (613)
                      ||+ |+|.++|+..    ....++.....+++.   .||.|||+.+ |||||||
T Consensus       121 y~~~GsL~~~l~~~----~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK  170 (362)
T KOG0192|consen  121 YMPGGSLSVLLHKK----RKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLK  170 (362)
T ss_pred             eCCCCcHHHHHhhc----ccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccC
Confidence            999 8999999874    233455555555554   8999999999 8888777

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.73  E-value=9.9e-18  Score=176.89  Aligned_cols=125  Identities=26%  Similarity=0.289  Sum_probs=104.8

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ..|.+++.||+|+|++|++| .+.+++.+|||++.+.      ..+-+.+|-.+|.++-.||.|++|+..|.+...+|+|
T Consensus        73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFv  152 (604)
T KOG0592|consen   73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFV  152 (604)
T ss_pred             hhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEE
Confidence            45999999999999999998 5889999999998863      2335667777888887999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      +||++ |+|.++|++.+      .+.+.+...+..   .++.|||+.+|||||||    ||++|||
T Consensus       153 Le~A~nGdll~~i~K~G------sfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmh  212 (604)
T KOG0592|consen  153 LEYAPNGDLLDLIKKYG------SFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGH  212 (604)
T ss_pred             EEecCCCcHHHHHHHhC------cchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCc
Confidence            99999 89999999653      566666655554   89999999999998887    5555554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.73  E-value=3.7e-17  Score=181.06  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=125.4

Q ss_pred             CCCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc-eeecccc---ccC-CCCCeEEEecCCCCeEEEEecCCCce
Q 007199           41 PPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP-IYSSYQA---SFN-SNASEFYLDVDEDWELYFHSKRFGKM  115 (613)
Q Consensus        41 ~~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~-i~s~~~~---~~~-~~~~~~~i~~~~DG~lY~~~~~~G~l  115 (613)
                      ...+.+.++.||+++.||.|||||+.||+++|+++++.+ ..++...   +.. .+.+.+|+ ++.||.||++|++||++
T Consensus        54 ~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v-~~~~g~v~AlD~~TG~~  132 (488)
T cd00216          54 EGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF-GTFDGRLVALDAETGKQ  132 (488)
T ss_pred             ccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE-ecCCCeEEEEECCCCCE
Confidence            334557899999999999999999999999999987654 2111000   001 11123454 55599999999999999


Q ss_pred             eeecccHHHH------hhhCceeecCCcEEEEee---------cceEEEEECCCCcEEEEEecCCCCC-CCCCcCCCCCc
Q 007199          116 KKLSSSAEEY------IRRMPYISKDGGVTLGAM---------KTSVFLVDVKSGRVVDNYVLDFSAS-TPGFQSDENKH  179 (613)
Q Consensus       116 ~~~~~~~~~~------v~~sP~~~~dg~v~~Gs~---------~~~~~~vD~~tG~~~~~~~~~~~~~-~~~~~~~~~~~  179 (613)
                       +|.+.+...      +.++|++. ++.||+|+.         ++.+||+|++||+++|++....... ..+....... 
T Consensus       133 -~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~-  209 (488)
T cd00216         133 -VWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ-  209 (488)
T ss_pred             -eeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc-
Confidence             999998765      78999999 899999974         6789999999999999998753211 1111100000 


Q ss_pred             cccCCCcccccccccccccccccEEEEEeeee------------------EEEEEeCCCCceEEEEEece
Q 007199          180 VVPVDGYEELVESGVGNLKRIRQLVYIMRTDY------------------VLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~------------------~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .|...+.. .-.+...++  ..++||+|..+.                  .|+|+|.+||+++|.+....
T Consensus       210 ~~~~~g~~-vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~  276 (488)
T cd00216         210 MWGPGGGT-SWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP  276 (488)
T ss_pred             eecCCCCC-ccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC
Confidence            00000000 000111111  256999998664                  89999999999999987653

The alignment model contains an 8-bladed beta-propeller.

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-18  Score=181.20  Aligned_cols=126  Identities=23%  Similarity=0.376  Sum_probs=103.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--hH--HHHHHHHHHHhcCCCCcceeEEEEEEeCC-EEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--HD--VALKEIQNLIASDQHPNIVRWYGVESDQD-FVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--~~--~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~~~LV~  546 (613)
                      ++|...+.||.|+||.||+|. ..+|..||||+|++..  .+  .=.||+..|.++-.|||||++++.+.+.+ .+|+||
T Consensus        10 ~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVf   89 (538)
T KOG0661|consen   10 DRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVF   89 (538)
T ss_pred             HHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeH
Confidence            558889999999999999984 7889999999999732  23  34689999999933999999999999988 999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      |||..+|+++++.++     ..+++..+..++   ++||.|+|++|+.|||+|       |+|||++
T Consensus        90 E~Md~NLYqLmK~R~-----r~fse~~irnim~QilqGL~hiHk~GfFHRDlK-------PENiLi~  144 (538)
T KOG0661|consen   90 EFMDCNLYQLMKDRN-----RLFSESDIRNIMYQILQGLAHIHKHGFFHRDLK-------PENILIS  144 (538)
T ss_pred             HhhhhhHHHHHhhcC-----CcCCHHHHHHHHHHHHHHHHHHHhcCcccccCC-------hhheEec
Confidence            999999999999753     345555554444   499999999999877665       6666654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.72  E-value=6.6e-17  Score=173.53  Aligned_cols=179  Identities=16%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      .+++.++.+|+++.||.|||+|..||+++|++..++.+.++..   .. .+.+|+ ++.||.||++|.++|++ +|.+..
T Consensus       100 ~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~---v~-~~~v~v-~~~~g~l~a~d~~tG~~-~W~~~~  173 (377)
T TIGR03300       100 GVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL---VA-NGLVVV-RTNDGRLTALDAATGER-LWTYSR  173 (377)
T ss_pred             ceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE---EE-CCEEEE-ECCCCeEEEEEcCCCce-eeEEcc
Confidence            3456889999999999999999999999999998887766521   11 123454 45599999999999999 998877


Q ss_pred             HHHh-----hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCC-----------CCCCCCcCCCCCccccCCCc
Q 007199          123 EEYI-----RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFS-----------ASTPGFQSDENKHVVPVDGY  186 (613)
Q Consensus       123 ~~~v-----~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  186 (613)
                      ....     .++|++. |+.+|+|+.++.++++|++||+++|++....+           ..++|...++.-+....++.
T Consensus       174 ~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~  252 (377)
T TIGR03300       174 VTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR  252 (377)
T ss_pred             CCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE
Confidence            6432     3688888 78899999999999999999999999865322           12234333322222222222


Q ss_pred             ccccccc------------cccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          187 EELVESG------------VGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       187 ~~~~~~~------------~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ..+++..            ...+...++.||++..|+.|+|+|.++|+++|+.+
T Consensus       253 l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~  306 (377)
T TIGR03300       253 VAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKND  306 (377)
T ss_pred             EEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccc
Confidence            2222221            11122246799999999999999999999999874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.72  E-value=4e-18  Score=173.44  Aligned_cols=123  Identities=21%  Similarity=0.274  Sum_probs=103.5

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccch------HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHH------DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~------~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      -+|++.+.||+|.||+|-++ ....|+.||||.|++...      -.+.+||++|..+ +||||+.+|++|+..+.+.||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsL-NHPhII~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSL-NHPHIIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhc-CCCceeehhhhhcCCceEEEE
Confidence            34888999999999999997 468899999999987322      2578999999877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||.. |.|+||+..++      .+++..+.+++   ..|++|+|.++++|||||    ||+.|+
T Consensus       132 MEYaS~GeLYDYiSer~------~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~  190 (668)
T KOG0611|consen  132 MEYASGGELYDYISERG------SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNN  190 (668)
T ss_pred             EEecCCccHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCC
Confidence            99999 79999998764      34455554444   489999999999999999    566554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.70  E-value=1.7e-16  Score=175.84  Aligned_cols=163  Identities=14%  Similarity=0.109  Sum_probs=117.6

Q ss_pred             CCC-CEEEEEecCCcEEEEeCCCCeeeEEeeCCCc------eeeccccccCCCCCeEEEec--------CCCCeEEEEec
Q 007199           46 PEP-DVALVAALDGTIHLVDTKLGKIRWSFGTGRP------IYSSYQASFNSNASEFYLDV--------DEDWELYFHSK  110 (613)
Q Consensus        46 ~~~-~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~------i~s~~~~~~~~~~~~~~i~~--------~~DG~lY~~~~  110 (613)
                      +.+ +.||+++.||.|||+|++||+++|+++.++.      +.+++.   -.+ +.+|+..        ..+|.||++|+
T Consensus       107 ~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~---v~~-~~v~vg~~~~~~~~~~~~g~v~alD~  182 (488)
T cd00216         107 YWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPT---IVK-KLVIIGSSGAEFFACGVRGALRAYDV  182 (488)
T ss_pred             EccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCE---EEC-CEEEEeccccccccCCCCcEEEEEEC
Confidence            446 9999999999999999999999999998876      344311   111 2344443        23789999999


Q ss_pred             CCCceeeecccHHH---------------------HhhhCceee-cCCcEEEEeecc------------------eEEEE
Q 007199          111 RFGKMKKLSSSAEE---------------------YIRRMPYIS-KDGGVTLGAMKT------------------SVFLV  150 (613)
Q Consensus       111 ~~G~l~~~~~~~~~---------------------~v~~sP~~~-~dg~v~~Gs~~~------------------~~~~v  150 (613)
                      .||++ +|.+.+..                     .|.++|++. .+|.||+|+-++                  ++|||
T Consensus       183 ~TG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al  261 (488)
T cd00216         183 ETGKL-LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL  261 (488)
T ss_pred             CCCce-eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence            99999 99987741                     245577875 468899998664                  89999


Q ss_pred             ECCCCcEEEEEecCCC------CCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          151 DVKSGRVVDNYVLDFS------ASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       151 D~~tG~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      |++||+++|++.....      ..++|...+                ....+. .....||++..++.|+|+|++||+++
T Consensus       262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~----------------~~~~~g-~~~~~V~~g~~~G~l~ald~~tG~~~  324 (488)
T cd00216         262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLAD----------------IKPKDG-KPVPAIVHAPKNGFFYVLDRTTGKLI  324 (488)
T ss_pred             cCCCCCEEEEeeCCCCCCcccccCCCCeEEe----------------ccccCC-CeeEEEEEECCCceEEEEECCCCcEe
Confidence            9999999999975421      011111000                000000 01136999999999999999999999


Q ss_pred             EEEEec
Q 007199          225 WNVAYA  230 (613)
Q Consensus       225 Wn~t~~  230 (613)
                      |.....
T Consensus       325 W~~~~~  330 (488)
T cd00216         325 SARPEV  330 (488)
T ss_pred             eEeEee
Confidence            998776

The alignment model contains an 8-bladed beta-propeller.

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.70  E-value=1.4e-16  Score=168.86  Aligned_cols=122  Identities=24%  Similarity=0.190  Sum_probs=101.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.+.+.+.||+|.||.|.+|....+..||||.++..    .+.+|.+|+++|.++ +|||||+++|+|..++.+++|+||
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqL-khPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRL-KHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhcc-CCCCeeEEEeeeecCCchHHHHHH
Confidence            457889999999999999998888899999999973    335899999999999 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.+||..+.... ......--+...+..||+||.+.+++|||+-
T Consensus       617 mEnGDLnqFl~aheapt-~~t~~~vsi~tqiasgmaYLes~nfVHrd~a  664 (807)
T KOG1094|consen  617 MENGDLNQFLSAHELPT-AETAPGVSICTQIASGMAYLESLNFVHRDLA  664 (807)
T ss_pred             HhcCcHHHHHHhccCcc-cccchhHHHHHHHHHHHHHHHhhchhhcccc
Confidence            99 99999999874211 1111222233444489999999999998886

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.70  E-value=6.8e-17  Score=166.20  Aligned_cols=122  Identities=28%  Similarity=0.276  Sum_probs=102.7

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQD--FVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~~LV~E~  548 (613)
                      +...+.||+|+||.||++. ..+|+.+|||.+....   .+.+.+|+++|.++ +|||||+++|.....+  .++|.|||
T Consensus        19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l-~~p~IV~~~G~~~~~~~~~~~i~mEy   97 (313)
T KOG0198|consen   19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRL-NHPNIVQYYGSSSSRENDEYNIFMEY   97 (313)
T ss_pred             hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhC-CCCCEEeeCCccccccCeeeEeeeec
Confidence            6778899999999999974 5569999999988754   45689999999998 7999999999866555  69999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ++ |+|.+++...+    . .+++..+.++..   +||.|||+++++|||||       |+||||
T Consensus        98 ~~~GsL~~~~~~~g----~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK-------~~NiLl  150 (313)
T KOG0198|consen   98 APGGSLSDLIKRYG----G-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIK-------PANILL  150 (313)
T ss_pred             cCCCcHHHHHHHcC----C-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcc-------cceEEE
Confidence            99 79999999753    2 577777766665   99999999999999888       666665

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.7e-16  Score=162.72  Aligned_cols=125  Identities=21%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|++.++||.|..++||+| .+..++.||||++..+    ..+.+.+|++.|..+ +||||++++..|..+.++|+||.
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~-~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLI-DHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhc-CCCCcceEEEEEEecceeEEeeh
Confidence            45999999999999999997 4788899999999863    346889999888555 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||. ||+.++++..    -...+.+..++.++.   .||.|||+++-||||+|    |++.||
T Consensus       105 fMa~GS~ldIik~~----~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG  163 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTY----YPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDG  163 (516)
T ss_pred             hhcCCcHHHHHHHH----ccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCC
Confidence            999 8999999976    344466666666555   89999999999999999    888887

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.69  E-value=5.3e-17  Score=162.35  Aligned_cols=122  Identities=24%  Similarity=0.223  Sum_probs=97.4

Q ss_pred             cccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccchH-----HHHHHHHHHHhcCCCCcceeEEEEEEeC--C
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRWYGVESDQ--D  540 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~-----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~  540 (613)
                      .+--+.|+..+.|++|+||.||++ +..+++.||+|+++.+..+     ...+||.+|.+. +|||||.+.......  +
T Consensus        72 Crsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~-~H~NIV~vkEVVvG~~~d  150 (419)
T KOG0663|consen   72 CRSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKA-RHPNIVEVKEVVVGSNMD  150 (419)
T ss_pred             cccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhc-CCCCeeeeEEEEeccccc
Confidence            333355888999999999999997 5889999999999864322     568999999888 999999999988754  4


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+|||||||+-||..+++.-+     ..+....+   +.++..|++|||.+.|+|||||
T Consensus       151 ~iy~VMe~~EhDLksl~d~m~-----q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK  204 (419)
T KOG0663|consen  151 KIYIVMEYVEHDLKSLMETMK-----QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLK  204 (419)
T ss_pred             eeeeeHHHHHhhHHHHHHhcc-----CCCchHHHHHHHHHHHHHHHHHhhceeEecccc
Confidence            899999999999999998743     23333333   3334489999999999887776

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-16  Score=172.01  Aligned_cols=122  Identities=25%  Similarity=0.294  Sum_probs=100.0

Q ss_pred             EEEeeeEeecCceEEEEEEeeC--C---cEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYE--G---RSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~--g---~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      ..+.+.||+|+||.||+|....  +   ..||||..+.      ....++.+|.++|..+ +|||||++||++....++|
T Consensus       159 v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l-~H~NVVr~yGVa~~~~Pl~  237 (474)
T KOG0194|consen  159 IELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQL-NHPNVVRFYGVAVLEEPLM  237 (474)
T ss_pred             ccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEcCCCccE
Confidence            5566899999999999985322  2   2389998884      2344899999999886 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+|. |+|.++|+...     ..++...-.+++.   .||.|||++++|||||-    |++.+.
T Consensus       238 ivmEl~~gGsL~~~L~k~~-----~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~  299 (474)
T KOG0194|consen  238 LVMELCNGGSLDDYLKKNK-----KSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKG  299 (474)
T ss_pred             EEEEecCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCC
Confidence            9999999 69999999753     2455555555555   89999999999999998    777754

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.1e-18  Score=167.53  Aligned_cols=126  Identities=24%  Similarity=0.306  Sum_probs=104.3

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEE-EEEeCCE-EEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYG-VESDQDF-VYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g-~~~~~~~-~~LV  545 (613)
                      .|++.++||+|+||+|||+ .+.+|..||.|.+.-     ..++.+..|+.+|+++ +|||||++++ .+.++.+ ++||
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL-~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQL-NHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhc-CCchHHHHHHHhhhccchhhHHH
Confidence            3888999999999999997 689999999998874     3455788999999888 9999999998 5555555 9999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc--CC--ceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP--VM--ENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~--~~--iiHrDlK----llh~dg  602 (613)
                      ||||. |||.+.|+..+.  ....+++..+.+++.   .||.++|.  ..  |+|||||    |+..+|
T Consensus        99 mE~c~~GDLsqmIk~~K~--qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~g  165 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKK--QKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANG  165 (375)
T ss_pred             HHhhcccCHHHHHHHHHh--ccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCC
Confidence            99999 899999998653  456678877777766   89999999  44  7788777    666666

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=1.7e-17  Score=159.23  Aligned_cols=119  Identities=24%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|+.++.||+|.||.||.+. ..++-.||+|.+.++.      ..++.+|+++-..+ +||||+++|++|.+...+||+
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L-~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHL-RHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeeccc-CCccHHhhhhheeccceeEEE
Confidence            348899999999999999974 7778899999998732      33788999877666 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +||.+ |+|+..|+..+    ...+.+...   .+.+..|+.|+|.+++||||||
T Consensus       101 lEya~~gel~k~L~~~~----~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiK  151 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGR----MKRFDEQRAATYIKQLANALLYCHLKRVIHRDIK  151 (281)
T ss_pred             EEecCCchHHHHHHhcc----cccccccchhHHHHHHHHHHHHhccCCcccCCCC
Confidence            99999 89999999543    222333333   3344489999999999887765

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.68  E-value=2.9e-17  Score=178.40  Aligned_cols=134  Identities=24%  Similarity=0.287  Sum_probs=113.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------EEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQD------FVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------~~~  543 (613)
                      +...+.||+|+||.||+++ ..+|+.||||.++.    ...+.+.+|+++|+++ +|+|||++++.-.+..      ...
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKL-nh~NIVk~f~iee~~~~~~~~~~~v   93 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKL-NHPNIVKLFDIEETKFLGLVTRLPV   93 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHc-CchhhhhhcccCCccccCcccccce
Confidence            6678899999999999985 89999999998886    4566889999999999 8999999999876543      678


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc---eecCCCcCcceeeecc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE---LWKANGHPSAQLLKVT  612 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK---llh~dg~PsniLlkl~  612 (613)
                      +|||||. |||...|+...   ....+++..+..++.   .||+|||.++|+|||||   ++--.|.|+-.+-||.
T Consensus        94 lvmEyC~gGsL~~~L~~PE---N~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLt  166 (732)
T KOG4250|consen   94 LVMEYCSGGSLRKVLNSPE---NAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLT  166 (732)
T ss_pred             EEEeecCCCcHHHHhcCcc---cccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeee
Confidence            9999999 79999998754   455677777766665   89999999999999998   6667777777777764

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.68  E-value=3.4e-16  Score=166.64  Aligned_cols=123  Identities=23%  Similarity=0.294  Sum_probs=100.8

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----c---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----H---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      ..|...+.||+|+||+|+.+ ...+++.||+|.+.++     .   .+.+.+|+.++.++..||||+++++++.....+|
T Consensus        17 g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~   96 (370)
T KOG0583|consen   17 GKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIY   96 (370)
T ss_pred             CceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEE
Confidence            34899999999999999998 5788999999977763     1   3356789999988833999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKAN  601 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~d  601 (613)
                      +|||||. |+|++++....      .+.+..+.++   ++.|+.|||+.+|+|||||    |+..+
T Consensus        97 ivmEy~~gGdL~~~i~~~g------~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~  156 (370)
T KOG0583|consen   97 IVMEYCSGGDLFDYIVNKG------RLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGN  156 (370)
T ss_pred             EEEEecCCccHHHHHHHcC------CCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCC
Confidence            9999999 69999999732      3444444444   4499999999999999998    55444

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.68  E-value=6.7e-17  Score=171.33  Aligned_cols=123  Identities=23%  Similarity=0.221  Sum_probs=100.4

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      +.+.+.||+|.||.|+.+.......||+|.++..  ..+.|.+|+++|+++ +|+|||+++++|..++.+|||||||+ |
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L-~H~~lV~l~gV~~~~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKL-RHEKLVKLYGVCTKQEPIYIVTEYMPKG  286 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhC-cccCeEEEEEEEecCCceEEEEEecccC
Confidence            6678899999999999965444458999999872  446899999999998 99999999999999999999999999 9


Q ss_pred             cHHHHHHHhcCCCccccCCHH---HHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          552 SLNDLIYVLSGSFEEQLNAKE---QDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~---~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|.++|+...    ...+...   .+...+++||+||+++++|||||-    |+..++
T Consensus       287 sLl~yLr~~~----~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~  340 (468)
T KOG0197|consen  287 SLLDYLRTRE----GGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDL  340 (468)
T ss_pred             cHHHHhhhcC----CCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCc
Confidence            9999999732    2233333   334444499999999999999997    665554

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.68  E-value=7.4e-17  Score=165.54  Aligned_cols=126  Identities=20%  Similarity=0.161  Sum_probs=107.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|+..+.||+|.-|+||+++ ..++..+|+|.|.++.      ...++.|-+||..+ +||.++.||+.|+.+++.||+
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~l-DHPFlPTLYa~fet~~~~cl~  155 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLL-DHPFLPTLYASFETDKYSCLV  155 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhc-CCCccchhhheeeccceeEEE
Confidence            458888999999999999986 5566899999999732      22567777889777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      ||||+ |+|..+++++    ....+++..+..++.   .||+|||..+||.||||    |++.|||
T Consensus       156 meyCpGGdL~~LrqkQ----p~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGH  217 (459)
T KOG0610|consen  156 MEYCPGGDLHSLRQKQ----PGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGH  217 (459)
T ss_pred             EecCCCccHHHHHhhC----CCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCc
Confidence            99999 6999998875    566777777666665   79999999999999998    7788775

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.67  E-value=7.9e-16  Score=165.11  Aligned_cols=122  Identities=22%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++ ...+++.||||.+.+.      ..+.+.+|++++.++ +||||+++++++.+.++.||||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l-~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAES-DSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhC-CCCCcceEEEEEEcCCeeEEEE
Confidence            4788999999999999997 4678999999998752      234678899988777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...+      .+++..+..+   ++.||.|||+.+|+|||||    |++.++
T Consensus        81 E~~~gg~L~~~l~~~~------~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~  138 (377)
T cd05629          81 EFLPGGDLMTMLIKYD------TFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGG  138 (377)
T ss_pred             eCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCC
Confidence            9999 69999997532      3444444433   3389999999999888887    555544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=4.6e-16  Score=160.87  Aligned_cols=130  Identities=23%  Similarity=0.249  Sum_probs=106.3

Q ss_pred             cccccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHh-cCCCCcceeEEEEEEeCC----E
Q 007199          467 DGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIA-SDQHPNIVRWYGVESDQD----F  541 (613)
Q Consensus       467 ~~~~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~-l~~HpnIV~l~g~~~~~~----~  541 (613)
                      ..+.+.+...+.+.||+|.||.||+ +.+.|+.||||++...+.+.+.+|.++.+. +++|+||+.+++.-..++    +
T Consensus       205 VQRTiarqI~L~e~IGkGRyGEVwr-G~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQ  283 (513)
T KOG2052|consen  205 VQRTIARQIVLQEIIGKGRFGEVWR-GRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQ  283 (513)
T ss_pred             hHHhhhheeEEEEEecCccccceee-ccccCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEE
Confidence            4456777789999999999999998 678899999999998888889999988776 379999999999877554    7


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc--------CCceeeccc----eecCCCcC
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP--------VMENTKDIE----LWKANGHP  604 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~--------~~iiHrDlK----llh~dg~P  604 (613)
                      ++||.||.+ |||+|||...       .+..+-+.++..   .||.|||.        ..|.|||||    |+++||-+
T Consensus       284 LwLvTdYHe~GSL~DyL~r~-------tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C  355 (513)
T KOG2052|consen  284 LWLVTDYHEHGSLYDYLNRN-------TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  355 (513)
T ss_pred             EEEeeecccCCcHHHHHhhc-------cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcE
Confidence            999999999 9999999853       455555555555   89999995        357788887    66666644

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.3e-16  Score=173.88  Aligned_cols=122  Identities=25%  Similarity=0.252  Sum_probs=97.8

Q ss_pred             eEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      ..++.+.||+|+||+||+++.      .+...||||.++..    ...+|++|++.|..+ +|||||+|+|.|...+++|
T Consensus       487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l-~H~nIVrLlGVC~~~~P~~  565 (774)
T KOG1026|consen  487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAEL-QHPNIVRLLGVCREGDPLC  565 (774)
T ss_pred             heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEccCCeeE
Confidence            377888999999999999742      33457999999973    345899999999888 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCc--------cccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFE--------EQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~--------~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|+|||. |||.+||+.+.....        ...+...+..   .++..||.||.++.++||||-
T Consensus       566 MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLA  630 (774)
T KOG1026|consen  566 MVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLA  630 (774)
T ss_pred             EEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchh
Confidence            9999999 999999998653211        1113333333   333389999999999999996

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.66  E-value=1.1e-15  Score=163.22  Aligned_cols=123  Identities=20%  Similarity=0.154  Sum_probs=100.9

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|+..+.||+|+||+||++ ...+++.||||++++.      ....+.+|+.++.++ +||||+++++.+.+.+.+||||
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~-~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEA-DSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhC-CCCCcceEEEEEecCCeEEEEE
Confidence            4788999999999999997 4677899999999852      223677899888887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||    |++.++.
T Consensus        81 E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~  139 (363)
T cd05628          81 EFLPGGDMMTLLMKKD------TLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGH  139 (363)
T ss_pred             cCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCC
Confidence            9999 69999997532      345555544443   89999999999999888    6666553

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.66  E-value=4.6e-16  Score=168.46  Aligned_cols=127  Identities=22%  Similarity=0.125  Sum_probs=106.8

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCC-----CcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQH-----PNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~H-----pnIV~l~g~~~~~~~~~L  544 (613)
                      -+|.+.++||+|+||.|.+| +..+++.||||+++.  ....+...|+.+|..+-+|     -|+|+++++|...+++||
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            36899999999999999998 588899999999996  4556788999999887334     399999999999999999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      |+|++.-+|+++|+.+    ....+++..+..+..   .+|..||..+|||+|       +||+||||+
T Consensus       266 VfELL~~NLYellK~n----~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcD-------LKPENILL~  323 (586)
T KOG0667|consen  266 VFELLSTNLYELLKNN----KFRGLSLPLVRKFAQQILTALLFLHELGIIHCD-------LKPENILLK  323 (586)
T ss_pred             eehhhhhhHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecc-------CChhheeec
Confidence            9999999999999986    445577766666555   899999988887655       568888885

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.66  E-value=1.2e-15  Score=163.96  Aligned_cols=122  Identities=19%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|+..+.||+|+||+||++ ...+++.||||++.+.      ..+.+.+|+++|..+ +||||+++++++.+.+.+|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l-~h~~iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhc-CCCCeeeeEEEEecCCEEEEEE
Confidence            3788999999999999997 4678899999999752      233678899988887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....      .+++..+..   .++.||.|||..+|+|||||    |++.++
T Consensus        81 E~~~gg~L~~~l~~~~------~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~  138 (381)
T cd05626          81 DYIPGGDMMSLLIRME------VFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDG  138 (381)
T ss_pred             ecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCC
Confidence            9999 69999997542      344443333   33489999999999888877    555444

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.66  E-value=1.2e-15  Score=163.94  Aligned_cols=122  Identities=19%  Similarity=0.183  Sum_probs=99.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|...+.||+|+||+||++. ..+++.||+|++.+.      ..+.+.+|+++|.++ +||||+++++++.+.+.+||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~-~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEA-DNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhC-CCCcCCeEEEEEEeCCEEEEEE
Confidence            37889999999999999974 678899999999753      234678899988887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...+      .+++..+..++   +.||.|||+.+|+|||||    |+..++
T Consensus        81 E~~~gg~L~~~l~~~~------~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g  138 (382)
T cd05625          81 DYIPGGDMMSLLIRMG------IFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG  138 (382)
T ss_pred             eCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC
Confidence            9999 69999997532      34555544443   389999999999888887    555554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2.6e-16  Score=159.77  Aligned_cols=123  Identities=22%  Similarity=0.155  Sum_probs=96.2

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEEEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVYLS  545 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~LV  545 (613)
                      .-.|...+++|+|+||.||++. ..+++.||||+...... .-.+|+++|+.+ +|||||+|.-+|....     +..||
T Consensus        23 ~i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r-~knrEl~im~~l-~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   23 EISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR-YKNRELQIMRKL-DHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC-cCcHHHHHHHhc-CCcCeeeEEEEEEecCCCchhHHHHH
Confidence            3348889999999999999985 56689999999875322 345788899866 9999999998887532     45689


Q ss_pred             ecCCCccHHHHHHHhc-CCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLS-GSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||-+|.++++... .......+.....+.++.+|+.|||..+|+|||||
T Consensus       101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIK  152 (364)
T KOG0658|consen  101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIK  152 (364)
T ss_pred             HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            9999999999998631 11134445566677777799999999999887776

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=1.3e-15  Score=162.43  Aligned_cols=122  Identities=22%  Similarity=0.214  Sum_probs=99.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|+..+.||+|+||+||++. ..+|+.||||++...      ....+.+|+++|..+ +||||+++++++...+..||||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l-~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA-DNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCCcceEEEEEcCCeEEEEE
Confidence            48889999999999999974 678999999999852      223577899999887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....      .+++..+..+   ++.||.|||+.+|+|||||    |+..++
T Consensus        81 E~~~~g~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~  138 (364)
T cd05599          81 EYLPGGDMMTLLMKKD------TFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKG  138 (364)
T ss_pred             CCCCCcHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC
Confidence            9999 69999997532      3444444443   3489999999999888877    555544

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.65  E-value=1.8e-15  Score=162.28  Aligned_cols=122  Identities=20%  Similarity=0.189  Sum_probs=99.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||.||++. ..+++.||||++.+.      ..+.+.+|+++|.++ +||||+++++.+...+.+||||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l-~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhC-CCCCcceEEEEEEcCCEEEEEE
Confidence            38899999999999999974 677899999999752      234678999999887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...+      .+++..+..+   ++.||.|||+.+|+|||||    |+..++
T Consensus        81 E~~~~g~L~~~i~~~~------~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~  138 (376)
T cd05598          81 DYIPGGDMMSLLIRLG------IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDG  138 (376)
T ss_pred             eCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCC
Confidence            9999 69999997532      3444444333   3389999999999998888    555554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.65  E-value=3.4e-16  Score=162.84  Aligned_cols=124  Identities=29%  Similarity=0.293  Sum_probs=97.9

Q ss_pred             CceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----------------chHHHHHHHHHHHhcCCCCcceeEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----------------HHDVALKEIQNLIASDQHPNIVRWY  533 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----------------~~~~~~~Ei~~L~~l~~HpnIV~l~  533 (613)
                      -+.|++.+.||+|.||.|.++ ...+++.||||++.+.                 ..+.+.+||.+|+++ +|||||+|+
T Consensus        96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl-~H~nVV~Li  174 (576)
T KOG0585|consen   96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKL-HHPNVVKLI  174 (576)
T ss_pred             hhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhc-CCcCeeEEE
Confidence            355999999999999999998 4788999999999862                 224788999999998 999999999


Q ss_pred             EEEEeC--CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcce
Q 007199          534 GVESDQ--DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQ  607 (613)
Q Consensus       534 g~~~~~--~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~Psni  607 (613)
                      ++..+.  +.+|||+|||. |.+...=.      ....+.+.++..++.   .||.|||.++|||||||       |+|+
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~------d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIK-------PsNL  241 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPP------DKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIK-------PSNL  241 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCC------CcccccHHHHHHHHHHHHHHHHHHHhcCeeccccc-------hhhe
Confidence            998865  48999999999 76642211      112256666666665   89999999999887765       6666


Q ss_pred             ee
Q 007199          608 LL  609 (613)
Q Consensus       608 Ll  609 (613)
                      ||
T Consensus       242 Ll  243 (576)
T KOG0585|consen  242 LL  243 (576)
T ss_pred             EE
Confidence            55

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.65  E-value=2.3e-15  Score=158.52  Aligned_cols=122  Identities=21%  Similarity=0.153  Sum_probs=99.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+++.||+|.+...      ..+.+.+|+++|.++ +||||+++++++...+..|+||
T Consensus        19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMEL-SHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC-CCCCCCcEEEEEEcCCEEEEEE
Confidence            38999999999999999984 567899999999752      234688999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....      .+++..+..+   ++.||.|||+.+|+|||||    |++.++
T Consensus        98 e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~  155 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG------RFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKG  155 (329)
T ss_pred             cCCCCChHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCC
Confidence            9999 69999998532      3444444433   3489999999999888887    555554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=99.64  E-value=4.3e-15  Score=169.90  Aligned_cols=180  Identities=15%  Similarity=0.129  Sum_probs=119.9

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecccc-----------c----------cCCCCCeEEEecCCC
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQA-----------S----------FNSNASEFYLDVDED  102 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~-----------~----------~~~~~~~~~i~~~~D  102 (613)
                      +.+.+|++|++|.+|.|+|||+.||+++|+|+.+.++.+..+.           +          .+......++.++.|
T Consensus       190 Plvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D  269 (764)
T TIGR03074       190 PLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD  269 (764)
T ss_pred             CEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC
Confidence            4468999999999999999999999999999987654321100           0          000112244455669


Q ss_pred             CeEEEEecCCCceeeecccHHH----------------HhhhCceeecCCcEEEEee----------cceEEEEECCCCc
Q 007199          103 WELYFHSKRFGKMKKLSSSAEE----------------YIRRMPYISKDGGVTLGAM----------KTSVFLVDVKSGR  156 (613)
Q Consensus       103 G~lY~~~~~~G~l~~~~~~~~~----------------~v~~sP~~~~dg~v~~Gs~----------~~~~~~vD~~tG~  156 (613)
                      |.||++|++||++ .|.|..+.                .+.++|++. ++.||+|+.          .+.++|+|++||+
T Consensus       270 g~LiALDA~TGk~-~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       270 ARLIALDADTGKL-CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CeEEEEECCCCCE-EEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            9999999999999 88876532                246889999 888999975          6889999999999


Q ss_pred             EEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEE------------------eeeeEEEEEeC
Q 007199          157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIM------------------RTDYVLQSTSQ  218 (613)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ig------------------r~d~~l~a~d~  218 (613)
                      ++|++.++.+....+...++ .+. ...++  .=.+...++  ..+.||++                  .....|.|+|+
T Consensus       348 l~W~~~~g~p~~~~~~~~g~-~~~-~gg~n--~W~~~s~D~--~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGE-TYT-RNTPN--SWSVASYDE--KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             EeeEEecCCCCcccCCCCCC-Eec-cCCCC--ccCceEEcC--CCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            99999986544322222111 100 00000  000111111  13355552                  23567999999


Q ss_pred             CCCceEEEEEece
Q 007199          219 DSGEVLWNVAYAD  231 (613)
Q Consensus       219 ~~G~~~Wn~t~~~  231 (613)
                      +||+++|.+-+..
T Consensus       422 ~TGk~~W~~Q~~~  434 (764)
T TIGR03074       422 TTGKERWVFQTVH  434 (764)
T ss_pred             CCCceEEEecccC
Confidence            9999999886643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.64  E-value=2.4e-15  Score=155.07  Aligned_cols=123  Identities=18%  Similarity=0.127  Sum_probs=99.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|...+.||+|+||.||++. ..+++.||+|.++..    ....+.+|++++.++ +||||+++++++...+..++||||
T Consensus         6 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           6 TYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNL-KHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             cceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhC-CCCCEeeEEEEEcCCCeEEEEEeC
Confidence            38889999999999999974 567899999998752    234678999999887 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++|+|.+++....     ..++...+..   .+..||.|||+.+|+|||||    |++.++
T Consensus        85 ~~~~l~~~l~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~  140 (288)
T cd07871          85 LDSDLKQYLDNCG-----NLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKG  140 (288)
T ss_pred             CCcCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC
Confidence            9999999987542     2334444433   34489999999999988887    555444

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.64  E-value=2.4e-15  Score=154.82  Aligned_cols=117  Identities=19%  Similarity=0.097  Sum_probs=95.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |...+.||+|+||+||++. ..+|+.||||.+....      ...+.+|+++|.++ +|+||+++++++...+..++|||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l-~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKV-NSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEEEEEccCCeEEEEEE
Confidence            6778999999999999974 6789999999987522      23577899999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++....    ...+++..+..++   +.|+.|||+.+++|||||
T Consensus        81 ~~~~g~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dik  129 (285)
T cd05631          81 IMNGGDLKFHIYNMG----NPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLK  129 (285)
T ss_pred             ecCCCcHHHHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC
Confidence            999 69998886532    2234555544443   389999999999888877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.64  E-value=9.5e-16  Score=151.35  Aligned_cols=124  Identities=23%  Similarity=0.213  Sum_probs=102.5

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|+..+.||.|+||.|.+. .+.+|..+|+|.+.+.      ..+...+|..+|+.. .||.++++++.|.+.+.+|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v-~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAV-SHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhc-cCceeEEEEEeeccCCeEEEE
Confidence            34888999999999999996 5788999999999863      344678999999887 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |||++ |.|+.+|++.+      .+++..+..+.   +.|++|||+..|++||+|    +++++|+
T Consensus       123 meyv~GGElFS~Lrk~~------rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~  182 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRKSG------RFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGH  182 (355)
T ss_pred             EeccCCccHHHHHHhcC------CCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCc
Confidence            99999 69999999764      34444443333   389999999999998887    6666664

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.63  E-value=1.8e-16  Score=169.26  Aligned_cols=125  Identities=22%  Similarity=0.255  Sum_probs=102.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.+.+.+.||+|.||+||+| .+.| .||||.+..     +..+.|.+|+.++++- +|.||+=++|+|..+.. .||..
T Consensus       392 ~ev~l~~rIGsGsFGtV~Rg-~whG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkT-RH~NIlLFMG~~~~p~~-AIiTq  467 (678)
T KOG0193|consen  392 EEVLLGERIGSGSFGTVYRG-RWHG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKT-RHENILLFMGACMNPPL-AIITQ  467 (678)
T ss_pred             HHhhccceeccccccceeec-cccc-ceEEEEEecCCCCHHHHHHHHHHHHHHhhc-chhhheeeehhhcCCce-eeeeh
Confidence            34678899999999999985 3444 599999986     3456899999999888 99999999999998877 99999


Q ss_pred             CCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCCc
Q 007199          548 RCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       548 ~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      +|+| +|+.+||..+.++  .....-.+++..++||.|||.++|||||||    |+|.+++
T Consensus       468 wCeGsSLY~hlHv~etkf--dm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~k  526 (678)
T KOG0193|consen  468 WCEGSSLYTHLHVQETKF--DMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLK  526 (678)
T ss_pred             hccCchhhhhccchhhhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCc
Confidence            9998 9999999754322  222334566666699999999999999999    9998864

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.63  E-value=3.9e-17  Score=160.74  Aligned_cols=124  Identities=20%  Similarity=0.308  Sum_probs=109.7

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      |.+...||+|+||.||++ ++..|+.+|+|.+.. ...++..+|+.+|+++ +.|++|++||.|.....++||||||. |
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC-~S~yVVKYYGSYFK~sDLWIVMEYCGAG  113 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQC-KSKYVVKYYGSYFKHSDLWIVMEYCGAG  113 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHc-CCchhhhhhhhhccCCceEeehhhcCCC
Confidence            677889999999999997 789999999999986 6778999999999888 99999999999999999999999999 9


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCcC
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGHP  604 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~P  604 (613)
                      +..+.++.+     ...+.++.+..++.   .||.|||...-||||||    ||+.+|+.
T Consensus       114 SiSDI~R~R-----~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~A  168 (502)
T KOG0574|consen  114 SISDIMRAR-----RKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIA  168 (502)
T ss_pred             cHHHHHHHh-----cCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchh
Confidence            999999874     45667777766665   89999999999999999    77777753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=99.63  E-value=3.6e-15  Score=165.85  Aligned_cols=186  Identities=17%  Similarity=0.159  Sum_probs=121.9

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecc--c-----cccCCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSY--Q-----ASFNSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~--~-----~~~~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      +.+.+.+++||+++.+|.|||||+.||+++|+++.+.+.....  .     .......+.+|+ ++.||.|||+|+.||+
T Consensus        63 stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v-~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        63 SQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFF-GTLDARLVALDAKTGK  141 (527)
T ss_pred             cCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEE-EcCCCEEEEEECCCCC
Confidence            3455689999999999999999999999999998754321110  0     000001123454 5569999999999999


Q ss_pred             eeeecccHHH-----HhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCCCCCCCCcC-----CCCC
Q 007199          115 MKKLSSSAEE-----YIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQS-----DENK  178 (613)
Q Consensus       115 l~~~~~~~~~-----~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~-----~~~~  178 (613)
                      + .|.+.+.+     .+.++|++. ++.||+|+.      ++.++|+|++||+++|++.+.......+...     .+.+
T Consensus       142 ~-~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~  219 (527)
T TIGR03075       142 V-VWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG  219 (527)
T ss_pred             E-EeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence            9 99988753     467899999 888999974      6899999999999999998753211000000     0000


Q ss_pred             c-cccC-----CCcccccccccccccccccEEEEEee-----ee-----------EEEEEeCCCCceEEEEEeceee
Q 007199          179 H-VVPV-----DGYEELVESGVGNLKRIRQLVYIMRT-----DY-----------VLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       179 ~-~~~~-----~~~~~~~~~~~~~~~~~~~~v~igr~-----d~-----------~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                      . .-+.     .+.. .=.+...++  ..++||+|.-     ++           .|.|+|.+||+.+|.+-....+
T Consensus       220 ~~tw~~~~~~~gg~~-~W~~~s~D~--~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D  293 (527)
T TIGR03075       220 AKTWPGDAWKTGGGA-TWGTGSYDP--ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHD  293 (527)
T ss_pred             cCCCCCCccccCCCC-ccCceeEcC--CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCC
Confidence            0 0000     0000 000112222  2568999882     23           7999999999999997665433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.63  E-value=1.9e-15  Score=161.03  Aligned_cols=121  Identities=26%  Similarity=0.311  Sum_probs=101.4

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      ..+.+.|.+.++||+|.||.||+|. ..+|+.+|+|.+.+.      ..+.+.+|+++|.++..|||||.+++.|++.+.
T Consensus        31 ~~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~  110 (382)
T KOG0032|consen   31 EDIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDS  110 (382)
T ss_pred             ccccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCe
Confidence            4455679999999999999999984 677999999999863      235899999999998449999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||+|. |.|++.|...       .+++..+.   +++..+++|||+.+++|||+|
T Consensus       111 ~~lvmEL~~GGeLfd~i~~~-------~~sE~da~~~~~~il~av~~lH~~gvvHrDlK  162 (382)
T KOG0032|consen  111 VYLVMELCEGGELFDRIVKK-------HYSERDAAGIIRQILEAVKYLHSLGVVHRDLK  162 (382)
T ss_pred             EEEEEEecCCchHHHHHHHc-------cCCHHHHHHHHHHHHHHHHHHHhCCceeccCC
Confidence            999999999 6999999863       14444443   444499999999999888887

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.63  E-value=5.1e-15  Score=153.73  Aligned_cols=118  Identities=18%  Similarity=0.081  Sum_probs=96.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||+++..    ....+.+|++++..+ +||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGL-KHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhC-CCCCcCeEEEEEecCCeEEEEEE
Confidence            348899999999999999975 567899999998752    223678899999887 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+|+|.+++....     ..+....+..   .++.||.|||+.+|+|||||
T Consensus        84 ~~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk  130 (303)
T cd07869          84 YVHTDLCQYMDKHP-----GGLHPENVKLFLFQLLRGLSYIHQRYILHRDLK  130 (303)
T ss_pred             CCCcCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            99999999887642     2334444433   33489999999999888777

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.62  E-value=5.1e-15  Score=147.88  Aligned_cols=112  Identities=22%  Similarity=0.355  Sum_probs=88.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc-cHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS-SAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~-~~~~-  124 (613)
                      .++.+|+++.+|.|||+|+.||+++|+++.+.++....   .. ..+.+|+... |+.||++|..+|++ .|.. .... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~---~~-~~~~v~v~~~-~~~l~~~d~~tG~~-~W~~~~~~~~  108 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP---VV-DGGRVYVGTS-DGSLYALDAKTGKV-LWSIYLTSSP  108 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE---EE-ETTEEEEEET-TSEEEEEETTTSCE-EEEEEE-SSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee---ee-cccccccccc-eeeeEecccCCcce-eeeecccccc
Confidence            78999999999999999999999999999877766651   11 1124666664 88999999999999 8884 3331 


Q ss_pred             ----HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCC
Q 007199          125 ----YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       125 ----~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                          ....+|.+. ++.+|++..++.++++|++||+++|++....
T Consensus       109 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  109 PAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence                122344455 7779999999999999999999999998754

...

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=4.3e-15  Score=156.56  Aligned_cols=122  Identities=21%  Similarity=0.276  Sum_probs=98.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+++.||||+++..      ....+.+|+++|..+ +||||+++++++...+..||||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTT-KSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhC-CCCCCccEEEEEEcCCEEEEEE
Confidence            48899999999999999985 567899999999853      234678899988887 8999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....      .+.+..+..   .++.+|.|||+.+++|||||    ++..++
T Consensus        81 e~~~g~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~  138 (333)
T cd05600          81 EYVPGGDFRTLLNNLG------VLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG  138 (333)
T ss_pred             eCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCC
Confidence            9999 69999997532      344444433   33489999999999888887    454444

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.62  E-value=9.6e-16  Score=159.62  Aligned_cols=131  Identities=18%  Similarity=0.134  Sum_probs=94.7

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhc-CCCCcceeEEEEEEeCC----EEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIAS-DQHPNIVRWYGVESDQD----FVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l-~~HpnIV~l~g~~~~~~----~~~LV~E~~  549 (613)
                      +++.++||+|.||.||||.+ +++.||||++..++.+.|.+|-++..-. ++|+||++++++.....    +++||+||.
T Consensus       212 l~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh  290 (534)
T KOG3653|consen  212 LQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFH  290 (534)
T ss_pred             hhhHHHhhcCccceeehhhc-cCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeec
Confidence            67788999999999999654 4599999999998899999888766432 69999999999988776    899999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc--eecCCCcCcceeee
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE--LWKANGHPSAQLLK  610 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK--llh~dg~PsniLlk  610 (613)
                      + |||.+||+.+-    ........+..-+.+||.|||.-.---.-.|  +.|||+|-.|+|||
T Consensus       291 ~kGsL~dyL~~nt----isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK  350 (534)
T KOG3653|consen  291 PKGSLCDYLKANT----ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVK  350 (534)
T ss_pred             cCCcHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEc
Confidence            9 99999998752    1111222233333399999997422111112  44455555555554

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=2e-15  Score=156.04  Aligned_cols=122  Identities=20%  Similarity=0.169  Sum_probs=98.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||.||++. ..+++.||+|++...      ..+.+.+|+++|.++ +||||+++++++.+.+..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEV-SHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhC-CCCcHhhhHhhhccCCeEEEEE
Confidence            47889999999999999974 567899999999752      234678899999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||++ |+|.++++..+      .+++.....   .++.||.|||+.+++|||||    |+..++
T Consensus        81 e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~  138 (291)
T cd05612          81 EYVPGGELFSYLRNSG------RFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEG  138 (291)
T ss_pred             eCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC
Confidence            9999 69999997542      233333333   33489999999999988887    555444

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=5.3e-16  Score=165.13  Aligned_cols=123  Identities=23%  Similarity=0.226  Sum_probs=106.3

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      ..|...+.||+|+.|.||.+ ...+++.||||++..   ...+-+.+|+.+|+.. +|+|||+++..|...+++++||||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~-~H~NiVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDL-HHPNIVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhc-cchHHHHHHHHhcccceeEEEEee
Confidence            44788889999999999997 578899999999985   3455788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |+ |+|.|.+...       .+.+.+++.++.   +||+|||..+|+|||||    |+..+|.
T Consensus       352 m~ggsLTDvVt~~-------~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~  407 (550)
T KOG0578|consen  352 MEGGSLTDVVTKT-------RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGS  407 (550)
T ss_pred             cCCCchhhhhhcc-------cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCc
Confidence            99 6999999754       366667666665   99999999999999999    7777664

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.62  E-value=1.9e-15  Score=158.31  Aligned_cols=114  Identities=21%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             eeeEeecCceEEEEE-EeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCc
Q 007199          478 NKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC  551 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~G  551 (613)
                      .++||+|.||+||-+ ++.+|+.||||.|.+     ...+.+.+|+.+|.++ .||.||.+...|++.+.+++|||-+.|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l-~HPGiV~le~M~ET~ervFVVMEKl~G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNL-HHPGIVNLECMFETPERVFVVMEKLHG  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhc-CCCCeeEEEEeecCCceEEEEehhhcc
Confidence            678999999999986 689999999999886     3456899999999888 999999999999999999999999999


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++.+.|-..    +...+++.....++.   .||+|||.++|+|+|||
T Consensus       648 DMLEMILSs----EkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLK  691 (888)
T KOG4236|consen  648 DMLEMILSS----EKGRLPERITKFLVTQILVALRYLHFKNIVHCDLK  691 (888)
T ss_pred             hHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHhhhcceeeccCC
Confidence            998888654    445555444333332   79999999999988776

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.62  E-value=5.3e-15  Score=158.45  Aligned_cols=122  Identities=17%  Similarity=0.112  Sum_probs=99.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.+.||+|+||.||++. ..+++.||+|++.+.      ..+.+.+|+.++..+ +||||+++++++.+.+..|+|
T Consensus        43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~-~h~~iv~~~~~~~~~~~~~lv  121 (370)
T cd05596          43 EDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHA-NSEWIVQLHYAFQDDKYLYMV  121 (370)
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC-CCCCcceEEEEEecCCEEEEE
Confidence            448999999999999999974 678899999999752      223577899888777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++...       .+++.++..++.   .||.|||+.+|+|||||    |+..++
T Consensus       122 ~Ey~~gg~L~~~l~~~-------~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~  179 (370)
T cd05596         122 MEYMPGGDLVNLMSNY-------DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG  179 (370)
T ss_pred             EcCCCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCC
Confidence            99999 6999998653       245566655443   89999999999888887    555554

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.62  E-value=6.7e-15  Score=156.90  Aligned_cols=122  Identities=20%  Similarity=0.132  Sum_probs=98.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|+..+.||+|+||.||++. ..+++.||+|+++..      ....+.+|+.++..+ +||||+++++.+.+.+.+||||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEA-DGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC-CCCCEeeEEEEEEcCCEEEEEE
Confidence            47889999999999999974 667899999999752      234677899888777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....      .+++..+..+   ++.+|.|||+.+|+|||||    ++..++
T Consensus        81 E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~  138 (360)
T cd05627          81 EFLPGGDMMTLLMKKD------TLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKG  138 (360)
T ss_pred             eCCCCccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCC
Confidence            9999 69999997532      3444444433   3389999999999988888    555444

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1.4e-15  Score=165.02  Aligned_cols=125  Identities=17%  Similarity=0.170  Sum_probs=104.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+|+++. +.+++.+|||.+++      ...+....|.+++...-+||.|++++.+|++.+++|+|
T Consensus       368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fv  447 (694)
T KOG0694|consen  368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFV  447 (694)
T ss_pred             cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEE
Confidence            569999999999999999985 78889999999987      35567888988887766799999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCcC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGHP  604 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~P  604 (613)
                      |||+. |++..+.+       ...+++..+.-+.+   .||.|||+++||+||||    ||+.+||.
T Consensus       448 mey~~Ggdm~~~~~-------~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~  507 (694)
T KOG0694|consen  448 MEYVAGGDLMHHIH-------TDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHV  507 (694)
T ss_pred             EEecCCCcEEEEEe-------cccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcE
Confidence            99999 58544333       23456655555554   89999999999999999    88888874

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=6.7e-15  Score=155.13  Aligned_cols=124  Identities=20%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+++.||+|.+.+.      ..+.+.+|+.++..+ +|+||+++++++...+++|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNG-DRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC-CCCCCCceEEEEecCCeEEEEE
Confidence            48889999999999999974 677899999999752      233577888888776 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCCc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      ||++ |+|.+++....     ..+++..+..++   +.+|.|||+.+++|||||    +++.++.
T Consensus        81 e~~~g~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~  140 (331)
T cd05597          81 DYYVGGDLLTLLSKFE-----DRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGH  140 (331)
T ss_pred             ecCCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCC
Confidence            9999 69999997532     234444444433   389999999999998888    5555553

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.62  E-value=1e-14  Score=159.95  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=94.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeC--------CEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQ--------DFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--------~~~~  543 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||++... .....+|+.+|..+ +||||+++++++...        ..++
T Consensus        66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~-~~~~~~Ei~il~~l-~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD-PQYKNRELLIMKNL-NHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC-cchHHHHHHHHHhc-CCCCCcceeeeEeecccccCCCceEEE
Confidence            459999999999999999974 577899999988653 23456799888877 999999999987542        2578


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+|+|.+++.....  ....+++.++..++   +.||.|||+.+|+|||||
T Consensus       144 lvmE~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLK  197 (440)
T PTZ00036        144 VVMEFIPQTVHKYMKHYAR--NNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLK  197 (440)
T ss_pred             EEEecCCccHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcC
Confidence            9999999999888875321  23456666665544   389999999999888887

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.62  E-value=4.8e-15  Score=153.87  Aligned_cols=122  Identities=22%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             eEEEeeeEeecCceEEEEEEee-----------------CCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNY-----------------EGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRW  532 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~-----------------~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l  532 (613)
                      .|.+.++||+|+||.||++...                 ++..||+|.+....    ...+.+|+++|.++ +||||+++
T Consensus         6 ~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~   84 (304)
T cd05096           6 HLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRL-KDPNIIRL   84 (304)
T ss_pred             hCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhc-CCCCeeEE
Confidence            4888999999999999997421                 23479999987632    34688999999887 99999999


Q ss_pred             EEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCC-------------ccccCCHHHHHHH---HHHHHHHHhcCCceeecc
Q 007199          533 YGVESDQDFVYLSLERCT-CSLNDLIYVLSGSF-------------EEQLNAKEQDSNL---LNEVRIRLLPVMENTKDI  595 (613)
Q Consensus       533 ~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~-------------~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDl  595 (613)
                      ++++...+..++||||++ |+|.+++.......             ....++.....++   ++.||.|||+.+++||||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dl  164 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDL  164 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCc
Confidence            999999999999999999 69999997532100             0112333333333   338999999999888777


Q ss_pred             c
Q 007199          596 E  596 (613)
Q Consensus       596 K  596 (613)
                      |
T Consensus       165 k  165 (304)
T cd05096         165 A  165 (304)
T ss_pred             c
Confidence            6

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.61  E-value=4.6e-15  Score=151.01  Aligned_cols=117  Identities=18%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             eEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .|++.+.||+|+||.||++..    ..+..||+|.++...    ...+.+|++.+.++ +||||+++++++...+..++|
T Consensus         6 ~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           6 SIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQF-DHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCcCeEEEEEecCCCcEEE
Confidence            489999999999999999742    345689999988632    23688999998877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....     ..++......++.   .|+.|||+.+++|||||
T Consensus        85 ~e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dik  134 (266)
T cd05064          85 TEYMSNGALDSFLRKHE-----GQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLA  134 (266)
T ss_pred             EEeCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc
Confidence            99999 69999998632     2344454444443   89999999999888887

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.61  E-value=6.1e-15  Score=158.01  Aligned_cols=122  Identities=17%  Similarity=0.161  Sum_probs=98.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.+.||+|+||.||++. ..+++.+|+|.+.+.      ..+.+.+|+.++..+ +||||+++++++.+.+..|+|
T Consensus        43 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~-~hp~iv~~~~~~~~~~~~~lv  121 (370)
T cd05621          43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA-NSPWVVQLFCAFQDDKYLYMV  121 (370)
T ss_pred             HHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC-CCCCEeeEEEEEEcCCEEEEE
Confidence            458999999999999999974 667899999998751      223577888888666 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++...       .+++.++..++.   .||.|||+.+|+|||||    |++.++
T Consensus       122 ~Ey~~gg~L~~~l~~~-------~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~  179 (370)
T cd05621         122 MEYMPGGDLVNLMSNY-------DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHG  179 (370)
T ss_pred             EcCCCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCC
Confidence            99999 6999999753       245555554443   89999999999888877    555554

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.61  E-value=4.9e-15  Score=155.53  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++. ..+|+.||+|++++.      ....+.+|+++|.++ +||||+++++++...+..||||||++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~hp~i~~~~~~~~~~~~~~lv~e~~~~   79 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNT-RHPFLTALKYSFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC-CCCCCCCEEEEEEcCCEEEEEEeCCCC
Confidence            469999999999974 678999999999852      223677899989887 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...+      .+.+..+..+   ++.||+|||+.+|+|||||    +++.++
T Consensus        80 ~~L~~~l~~~~------~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~  132 (323)
T cd05571          80 GELFFHLSRER------VFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDG  132 (323)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCC
Confidence            69999997532      3445554443   3489999999999888887    555444

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.61  E-value=2.6e-15  Score=164.05  Aligned_cols=127  Identities=23%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-eCC---cEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-YEG---RSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~~g---~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      ....+.++||.|.||.||++++ ..|   ..||||.++..    .+.+|+.|..+|.+. +||||++|.|+......++|
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF-dHPNIIrLEGVVTks~PvMI  707 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF-DHPNIIRLEGVVTKSKPVMI  707 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC-CCCcEEEEEEEEecCceeEE
Confidence            3367899999999999999753 223   46999999963    344899999999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |.|||+ |+|+.||+.+.+  +...+++--+.|-+..||+||..++.+||||-    |++.|+
T Consensus       708 iTEyMENGsLDsFLR~~DG--qftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnL  768 (996)
T KOG0196|consen  708 ITEYMENGSLDSFLRQNDG--QFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNL  768 (996)
T ss_pred             EhhhhhCCcHHHHHhhcCC--ceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccce
Confidence            999999 999999998754  34445555556666699999999999999997    666554

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.61  E-value=8.6e-15  Score=155.05  Aligned_cols=116  Identities=23%  Similarity=0.238  Sum_probs=94.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeC-CcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYE-GRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~-g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .|.+.+.||+|+||.||++. ..+ +..||+|++...      ..+.+.+|++++..+ +||||+++++++...+..|+|
T Consensus        31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYI-NHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC-CCCCCcceEEEEEeCCEEEEE
Confidence            38899999999999999985 333 368999998752      334678899988777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++....      .+++.++..++   +.+|.|||+.+++|||||
T Consensus       110 ~Ey~~~g~L~~~i~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk  158 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNK------RFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLK  158 (340)
T ss_pred             EeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCC
Confidence            99999 69999998542      34555544433   389999999999888887

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.61  E-value=2.5e-15  Score=158.57  Aligned_cols=88  Identities=24%  Similarity=0.355  Sum_probs=73.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-E
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-F  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~  541 (613)
                      ++|++.+.||+|+||.||++.      ..+++.||||+++..    ..+.+.+|+.+|.++.+||||++++++|...+ .
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGP   86 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCc
Confidence            458999999999999999974      234568999999752    23468899999988878999999999887654 6


Q ss_pred             EEEEecCCC-ccHHHHHHHh
Q 007199          542 VYLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~  560 (613)
                      ++++||||+ |+|.++++..
T Consensus        87 ~~lv~ey~~~g~L~~~l~~~  106 (338)
T cd05102          87 LMVIVEFCKYGNLSNFLRAK  106 (338)
T ss_pred             eEEEEecCCCCcHHHHHHhc
Confidence            899999999 7999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.1e-15  Score=164.65  Aligned_cols=115  Identities=23%  Similarity=0.278  Sum_probs=98.1

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |++++.||+|+-|.|.+| +..+|+.+|||++.+.      ....+.+||-+ ++++.|||++++|++++++.++|||+|
T Consensus        14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIvi-MkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVI-MKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             eeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHH-HHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            889999999999999997 6899999999999873      23368899954 477799999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |.|+++|-.++      .+++..+++++.   .|+.|+|..+|+|||+|
T Consensus        93 yv~gGELFdylv~kG------~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLK  139 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKG------PLPEREAAHFFRQILDGVSYCHAFNICHRDLK  139 (786)
T ss_pred             ecCCchhHHHHHhhC------CCCCHHHHHHHHHHHHHHHHHhhhcceeccCC
Confidence            999 79999998643      455555555554   89999999999988877

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.61  E-value=5.8e-15  Score=155.06  Aligned_cols=117  Identities=21%  Similarity=0.153  Sum_probs=93.7

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||.||++. ..+|..||+|.++..      ....+.+|++++.++ +||||+++++++...+..|||||||+ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT-RHPFLTALKYAFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC-CCCCCcceeeEEecCCEEEEEEeCCCC
Confidence            479999999999974 678999999999852      223567899888777 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...+      .+++..+..++   +.||.|||+.+++|||||    |++.++
T Consensus        80 ~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~  132 (323)
T cd05595          80 GELFFHLSRER------VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG  132 (323)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCC
Confidence            69998887532      34455544443   389999999999888877    555444

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.61  E-value=2e-15  Score=153.38  Aligned_cols=119  Identities=22%  Similarity=0.167  Sum_probs=97.0

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccch-----HHHHHHHHHHHhcCCCCc-ceeEEEEEEeCC------E
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHH-----DVALKEIQNLIASDQHPN-IVRWYGVESDQD------F  541 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~-----~~~~~Ei~~L~~l~~Hpn-IV~l~g~~~~~~------~  541 (613)
                      |...++||+|+||+||+| ...+|+.||+|+++.+..     ....+|+.+|.++ +|+| ||++++++...+      .
T Consensus        13 ~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L-~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   13 YEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRL-SHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHh-CCCcceEEEEeeeeecccccccce
Confidence            566778999999999998 578899999999986433     2578999988888 9999 999999999888      8


Q ss_pred             EEEEecCCCccHHHHHHHhcCCCccccCC---HHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCTCSLNDLIYVLSGSFEEQLNA---KEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~GsL~~~L~~~~~~~~~~~~~---~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+.-+|.+++.......  ...+   ....+++++.|+.|||+++|+|||||
T Consensus        92 l~lvfe~~d~DL~~ymd~~~~~~--~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLK  147 (323)
T KOG0594|consen   92 LYLVFEFLDRDLKKYMDSLPKKP--QGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLK  147 (323)
T ss_pred             EEEEEEeecccHHHHHHhccccc--cCCCHHHHHHHHHHHHHHHHHHHhCCeecccCC
Confidence            99999999999999999764211  2333   34445555699999999999877765

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.61  E-value=1e-14  Score=153.77  Aligned_cols=123  Identities=19%  Similarity=0.158  Sum_probs=97.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+++.||+|.+.+.      ....+.+|+.++... +|+||+++++++...+..||||
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNG-DCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEcCCEEEEEE
Confidence            48899999999999999974 667889999998752      223467788777666 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....     ..+++..+..++   +.||+|||+.+|+|||||    ++..++
T Consensus        81 Ey~~gg~L~~~l~~~~-----~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~  139 (331)
T cd05624          81 DYYVGGDLLTLLSKFE-----DRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNG  139 (331)
T ss_pred             eCCCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCC
Confidence            9999 69999998632     234444444333   389999999999988887    555444

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.60  E-value=1e-14  Score=153.49  Aligned_cols=123  Identities=20%  Similarity=0.130  Sum_probs=99.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+|+.||+|+++..      ..+.+.+|+.++..+ +||||+++++++...+..||||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~-~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSIS-NSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCCcceeeEEecCCeEEEEE
Confidence            48889999999999999974 678999999999863      233677888887666 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....     ..+++..+..++   +.||+|||+.+|+|||||    ++..++
T Consensus        81 e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~  139 (330)
T cd05601          81 EYQPGGDLLSLLNRYE-----DQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTG  139 (330)
T ss_pred             CCCCCCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCC
Confidence            9999 69999998642     245555554443   389999999999888877    454444

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=6.3e-15  Score=156.07  Aligned_cols=122  Identities=24%  Similarity=0.224  Sum_probs=99.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+|+.||||+++..      ....+.+|++++..+ +||||+++++++.+.+..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADA-DSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhc-CCCCccchhhheecCCeEEEEE
Confidence            48889999999999999974 568999999999852      234678899888777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...      ..+++.++..++.   .||.|||..+++|||||    ++..++
T Consensus        81 e~~~~~~L~~~l~~~------~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~  138 (350)
T cd05573          81 EYMPGGDLMNLLIRK------DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADG  138 (350)
T ss_pred             cCCCCCCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC
Confidence            9999 6999999854      2345555544443   89999999999988887    555554

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.60  E-value=1e-14  Score=145.69  Aligned_cols=151  Identities=22%  Similarity=0.364  Sum_probs=112.3

Q ss_pred             cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCceeecC
Q 007199           56 LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKD  135 (613)
Q Consensus        56 ~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~d  135 (613)
                      .+|+|+|+|+.||+++|++..++++-+....+.. +...+|+. +.++.||++|+.+|++ .|.++.++.+...|... +
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~-~   76 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVA-SGDGNLYALDAKTGKV-LWRFDLPGPISGAPVVD-G   76 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEE-ETTSEEEEEETTTSEE-EEEEECSSCGGSGEEEE-T
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEE-cCCCEEEEEECCCCCE-EEEeeccccccceeeec-c
Confidence            3799999999999999999874433222101111 12245555 5599999999999999 99999998888889777 8


Q ss_pred             CcEEEEeecceEEEEECCCCcEEEEE-ecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEE
Q 007199          136 GGVTLGAMKTSVFLVDVKSGRVVDNY-VLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQ  214 (613)
Q Consensus       136 g~v~~Gs~~~~~~~vD~~tG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~  214 (613)
                      +.||+++.++.++++|++||+++|+. ....+..  +.                 ..+.  .+...++.+|++..++.|+
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~-----------------~~~~--~~~~~~~~~~~~~~~g~l~  135 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GV-----------------RSSS--SPAVDGDRLYVGTSSGKLV  135 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--ST-----------------B--S--EEEEETTEEEEEETCSEEE
T ss_pred             cccccccceeeeEecccCCcceeeeecccccccc--cc-----------------cccc--CceEecCEEEEEeccCcEE
Confidence            88999999999999999999999995 4432111  00                 0000  0001246899999999999


Q ss_pred             EEeCCCCceEEEEEece
Q 007199          215 STSQDSGEVLWNVAYAD  231 (613)
Q Consensus       215 a~d~~~G~~~Wn~t~~~  231 (613)
                      ++|+++|+++|++.+.+
T Consensus       136 ~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  136 ALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             EEETTTTEEEEEEESST
T ss_pred             EEecCCCcEEEEeecCC
Confidence            99999999999998854

...

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.60  E-value=9.5e-15  Score=153.80  Aligned_cols=111  Identities=19%  Similarity=0.141  Sum_probs=90.8

Q ss_pred             eeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||.||++ ...+|+.||+|++.+.      ....+.+|+++|..+ +||||+++++++...+..||||||++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNT-RHPFLTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence            46999999999997 4678999999999852      233678899888777 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++...+      .+.+..+..+   ++.||.|||+.+|+|||||
T Consensus        80 g~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDik  122 (328)
T cd05593          80 GELFFHLSRER------VFSEDRTRFYGAEIVSALDYLHSGKIVYRDLK  122 (328)
T ss_pred             CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEecccC
Confidence            69998887532      3444444443   3389999999999888877

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=3.2e-16  Score=166.16  Aligned_cols=124  Identities=25%  Similarity=0.302  Sum_probs=102.3

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.-.+.||.|+||.||.+ ...+.+.||||+|.-++      -.++.+|+..|.++ +|||+|.+.|||......+||
T Consensus        26 klf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l-~HPntieYkgCyLre~TaWLV  104 (948)
T KOG0577|consen   26 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQL-RHPNTIEYKGCYLREHTAWLV  104 (948)
T ss_pred             HHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhc-cCCCcccccceeeccchHHHH
Confidence            34777889999999999997 47788899999998432      23788999999888 999999999999999999999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||-||-.|+|.-++     ..+.+..++.+..   .||.|||+.+.||||||    ||...|
T Consensus       105 MEYClGSAsDlleVhk-----KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g  163 (948)
T KOG0577|consen  105 MEYCLGSASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPG  163 (948)
T ss_pred             HHHHhccHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCC
Confidence            9999998888887653     3445555555554   99999999999999999    565555

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.60  E-value=6.6e-15  Score=151.23  Aligned_cols=117  Identities=16%  Similarity=0.147  Sum_probs=93.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|.+.+.||+|+||.||++. ..+++.||||++...     ..+.+.+|++++.++ +||||+++++++...+..++|||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTL-KQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhC-CCccccchhhhEecCCEEEEEEe
Confidence            48899999999999999974 567889999998752     234678999988777 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+++.+.+.+...     ...+++..+..++.   .||.|||+.+++|||||
T Consensus        81 ~~~~~~l~~~~~~-----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk  127 (287)
T cd07848          81 YVEKNMLELLEEM-----PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIK  127 (287)
T ss_pred             cCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9996555555432     22355555544443   89999999999888877

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.60  E-value=7.6e-15  Score=163.73  Aligned_cols=124  Identities=23%  Similarity=0.291  Sum_probs=103.6

Q ss_pred             EEEeeeEeecCceEEEEEEeeCC-cEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEE-EEEeC------CEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEG-RSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYG-VESDQ------DFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g-~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g-~~~~~------~~~~  543 (613)
                      +.+.++|.+|+|+.||.+....+ ..+|+|++-..+   ...+.+||++|+.+..|+|||.+++ .....      -+++
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Evl  118 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVL  118 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEE
Confidence            78899999999999999865444 999999987643   3478899999999978999999999 33321      3789


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK----llh~dg  602 (613)
                      |.||||. |+|-|++..+    ....+.+..+.+++.   +|+.+||...  |||||||    |++.+|
T Consensus       119 lLmEyC~gg~Lvd~mn~R----lq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g  183 (738)
T KOG1989|consen  119 LLMEYCKGGSLVDFMNTR----LQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADG  183 (738)
T ss_pred             eehhhccCCcHHHHHHHH----HhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCC
Confidence            9999999 6999999975    334488888888887   9999999887  9999999    788777

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.59  E-value=9.7e-15  Score=152.49  Aligned_cols=115  Identities=22%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||.||++. ..+++.||+|++++.      ....+.+|+++|.++ +||||+++++++...+..|+|||||+ |+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQV-NCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            6999999999974 567889999999752      234677899999887 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |.+++....      .+.+.....+   ++.||.|||+.+|+|||||    ++..++
T Consensus        80 L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~  130 (312)
T cd05585          80 LFHHLQREG------RFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQG  130 (312)
T ss_pred             HHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCC
Confidence            999997532      3444444443   3389999999999888887    555544

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.59  E-value=5.9e-15  Score=158.52  Aligned_cols=117  Identities=23%  Similarity=0.261  Sum_probs=98.7

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      ..|.+...||+|.|++|.++ ...++..||+|.+.+..     ...+.+|+++|+.+ +|||||+++.+......+|+||
T Consensus        56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l-~HPnIvkl~~v~~t~~~lylV~  134 (596)
T KOG0586|consen   56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSL-NHPNIVKLFSVIETEATLYLVM  134 (596)
T ss_pred             cceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhc-CCcceeeeeeeeeecceeEEEE
Confidence            34899999999999999997 57889999999999732     23578999999877 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+. |.++++|..+.+      ..+..+.+.   +..+++|||++.|+|||||
T Consensus       135 eya~~ge~~~yl~~~gr------~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk  182 (596)
T KOG0586|consen  135 EYASGGELFDYLVKHGR------MKEKEARAKFRQIVSAVEYCHSKNIVHRDLK  182 (596)
T ss_pred             EeccCchhHHHHHhccc------chhhhhhhhhHHHHHHHHHHhhcceeccccc
Confidence            9999 799999997652      222233333   3389999999999999999

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.59  E-value=1.3e-14  Score=152.66  Aligned_cols=121  Identities=22%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~  543 (613)
                      |.+.+.||+|+||.||++. ..+|+.||||++...     ....+.+|+++|.++ +||||+++++++...+     ..|
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLL-RHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhC-CCCCEeeecceEeccCCCCCceEE
Confidence            7889999999999999974 678999999998742     233688999999887 9999999999886432     589


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|||||+++|.+++....      .+++..+..+   ++.||.|||+.+|+|||||    |+..++
T Consensus        81 lv~e~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~  140 (338)
T cd07859          81 VVFELMESDLHQVIKAND------DLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADC  140 (338)
T ss_pred             EEEecCCCCHHHHHHhcc------cCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC
Confidence            999999999999987532      3444444443   3389999999999888877    555554

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.59  E-value=1.5e-14  Score=154.94  Aligned_cols=122  Identities=17%  Similarity=0.146  Sum_probs=98.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.+.||+|+||.||++. ..+++.+|+|++.+.      ..+.+.+|+.++..+ +||||+++++++...+..|+|
T Consensus        43 ~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~-~hp~iv~~~~~~~~~~~~~lv  121 (371)
T cd05622          43 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA-NSPWVVQLFYAFQDDRYLYMV  121 (371)
T ss_pred             hhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEcCCEEEEE
Confidence            459999999999999999974 678899999998752      223567888877666 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.++++..       .+++.++..++   +.||.|||+.+|+|||||    |+..++
T Consensus       122 ~Ey~~gg~L~~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~  179 (371)
T cd05622         122 MEYMPGGDLVNLMSNY-------DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG  179 (371)
T ss_pred             EcCCCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCC
Confidence            99999 6999998753       24555554433   389999999999988887    555554

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.59  E-value=1.5e-14  Score=151.47  Aligned_cols=118  Identities=19%  Similarity=0.154  Sum_probs=92.8

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++. ..+++.||+|.++..      ..+.+..|..++....+||||+++++++...+..|+||||++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            469999999999984 567889999999852      223456677777666699999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++..+..+   ++.||.|||+.+|+|||||    ++..++
T Consensus        81 g~L~~~~~~~~------~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~  133 (316)
T cd05592          81 GDLMFHIQSSG------RFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDG  133 (316)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCC
Confidence            69999997542      3445544444   3389999999999888887    555554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.59  E-value=2.2e-14  Score=149.40  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=95.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|...+.||+|+||.||++. ..+++.||+|+++..    ....+.+|++++.++ +||||+++++++...+..++||||
T Consensus         7 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           7 TYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDL-KHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             ceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhC-CCCCcceEEEEEeeCCeEEEEEeC
Confidence            48899999999999999974 567889999998752    223677899999887 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++|.+++....     ..+....+..+   ++.+|.|||+.+|+|||||
T Consensus        86 ~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlk  131 (309)
T cd07872          86 LDKDLKQYMDDCG-----NIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLK  131 (309)
T ss_pred             CCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9999999887532     23444444443   3489999999999887777

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.59  E-value=2.2e-14  Score=151.08  Aligned_cols=122  Identities=19%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             EEEeeeEeecCceEEEEEE----eeCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG----NYEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~----~~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      |++.+.||+|+||.||++.    ..+++.||+|++.+.       ..+.+.+|++++.++.+||||+++++++...+..+
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (332)
T cd05614           2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLH   81 (332)
T ss_pred             ceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEE
Confidence            7889999999999999864    246889999999752       22357789988988867999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|||||+ |+|.+++....      .+++..+..++   +.+|.|||+.+++|||||    |+..++
T Consensus        82 lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~  142 (332)
T cd05614          82 LILDYVSGGEMFTHLYQRD------NFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEG  142 (332)
T ss_pred             EEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCC
Confidence            9999999 69999997532      34455544443   389999999999888887    555554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.58  E-value=1.6e-14  Score=152.07  Aligned_cols=112  Identities=17%  Similarity=0.094  Sum_probs=92.0

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++. ..+++.||+|++++.      ..+.+.+|+.++..+.+||||+++++++...+..|||||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            469999999999974 677899999999862      223577898888887789999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++...      ..+++..+..++.   .||.|||+.+++|||||
T Consensus        81 g~L~~~~~~~------~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk  123 (329)
T cd05588          81 GDLMFHMQRQ------RKLPEEHARFYSAEISLALNFLHERGIIYRDLK  123 (329)
T ss_pred             CCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC
Confidence            6999988753      2355555554443   89999999999988877

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=3e-15  Score=156.60  Aligned_cols=125  Identities=26%  Similarity=0.308  Sum_probs=106.3

Q ss_pred             ccccccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccchH-----HHHHHHHHHHhcCCCCcceeEEEEEEeC
Q 007199          466 VDGRRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRWYGVESDQ  539 (613)
Q Consensus       466 ~~~~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~-----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~  539 (613)
                      ..+-.|...|.+.+.||+|.|..|-++ +.++|..||||++.+...+     .+..|++.| ++.+|||||+||++...+
T Consensus        11 i~DgkIAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCM-KLVQHpNiVRLYEViDTQ   89 (864)
T KOG4717|consen   11 IYDGKIAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCM-KLVQHPNIVRLYEVIDTQ   89 (864)
T ss_pred             ccccceeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHH-HHhcCcCeeeeeehhccc
Confidence            344567778999999999999999987 6899999999999985443     678999888 555999999999999999


Q ss_pred             CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+|||+|+-. |+|+|||-++.     ..+.++.+..+++   .|+.|+|+..++|||||
T Consensus        90 TKlyLiLELGD~GDl~DyImKHe-----~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLK  145 (864)
T KOG4717|consen   90 TKLYLILELGDGGDLFDYIMKHE-----EGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLK  145 (864)
T ss_pred             ceEEEEEEecCCchHHHHHHhhh-----ccccHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence            99999999999 69999998853     4566777777776   78889999999988887

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=2e-14  Score=147.98  Aligned_cols=117  Identities=21%  Similarity=0.108  Sum_probs=95.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |+..+.||+|+||+||++. ..+++.||||.+....      ...+.+|++++.++ +||||+++++++...+..++|||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV-NSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhc-CCCCEeeeeeeecCCCeEEEEEe
Confidence            6788999999999999974 5678999999997522      23567899999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++...    ....+++..+..++.   .++.|||+.+++|||||
T Consensus        81 ~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk  129 (285)
T cd05605          81 LMNGGDLKFHIYNM----GNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLK  129 (285)
T ss_pred             ccCCCcHHHHHHhc----CcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCC
Confidence            999 6999888753    223455555554443   89999999999988877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.58  E-value=1.5e-14  Score=151.73  Aligned_cols=118  Identities=22%  Similarity=0.217  Sum_probs=94.3

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||+||++. ..+++.||||++++.      ..+.+..|+.++....+||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            469999999999974 567899999999752      234667888888777689999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...+      .+++..+..++   +.||.|||+.+++|||||    ++..++
T Consensus        81 g~L~~~i~~~~------~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~  133 (320)
T cd05590          81 GDLMFHIQKSR------RFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEG  133 (320)
T ss_pred             chHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCC
Confidence            69999987542      34444444433   389999999999888887    555554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.58  E-value=1.4e-14  Score=151.85  Aligned_cols=118  Identities=21%  Similarity=0.174  Sum_probs=93.7

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++. ..+++.||+|++++.      ..+.+..|.+++..+.+||||+++++++...+..|||||||+ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            469999999999984 567889999999852      223567888888777789999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...+      .+++..+..++   ..||.|||+.+++|||||    ++..++
T Consensus        81 ~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~  133 (321)
T cd05591          81 GDLMFQIQRSR------KFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEG  133 (321)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC
Confidence            69999987542      34444444333   389999999999888887    555554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.58  E-value=2.6e-14  Score=150.59  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=94.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+++.+|+|++.+.      ....+.+|+.++... +|+||+++++++.+.+..||||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG-DNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhC-CCCCEeeEEEEEecCCEEEEEE
Confidence            48889999999999999974 567889999998752      223577888877666 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.++++...     ..+++..+..++   +.++.|||+.+++|||||
T Consensus        81 ey~~~g~L~~~l~~~~-----~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlk  129 (332)
T cd05623          81 DYYVGGDLLTLLSKFE-----DRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIK  129 (332)
T ss_pred             eccCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC
Confidence            9999 79999998632     234444444433   389999999999888877

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.58  E-value=1.9e-14  Score=151.67  Aligned_cols=118  Identities=18%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+++.||+|++++.      ..+.+.+|+.++.++.+||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            479999999999974 677899999999863      223577888888777799999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...      ..+++..+..++.   .|+.|||+.+++|||||    ++..++
T Consensus        81 ~~L~~~~~~~------~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~  133 (329)
T cd05618          81 GDLMFHMQRQ------RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG  133 (329)
T ss_pred             CCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCC
Confidence            6999888753      2355555554443   89999999999888887    555554

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.58  E-value=7.6e-15  Score=157.55  Aligned_cols=88  Identities=24%  Similarity=0.279  Sum_probs=74.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++.      ..++..||||+++..    ..+.+.+|+++|..+.+||||++++++|...+..
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~  114 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPT  114 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcc
Confidence            348899999999999999973      234568999999752    2346889999998776899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHh
Q 007199          543 YLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~  560 (613)
                      ++|||||+ |+|.++++..
T Consensus       115 ~lv~E~~~~g~L~~~l~~~  133 (375)
T cd05104         115 LVITEYCCYGDLLNFLRRK  133 (375)
T ss_pred             eeeehhccCCcHHHHHHhc
Confidence            99999999 7999999764

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.58  E-value=2e-14  Score=151.04  Aligned_cols=111  Identities=21%  Similarity=0.127  Sum_probs=89.4

Q ss_pred             eeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||.||++ ...+|+.||+|.+.+.      ....+.+|++++..+ +||||+++++++...+..||||||++ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~-~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS-RHPFLTALKYSFQTHDRLCFVMEYANG   79 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46999999999997 4678999999999862      223567888888777 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhc-CCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~-~~iiHrDlK  596 (613)
                      |+|.+++...+      .+++..+..++   +.||.|||+ .+++|||||
T Consensus        80 ~~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDik  123 (325)
T cd05594          80 GELFFHLSRER------VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLK  123 (325)
T ss_pred             CcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCC
Confidence            69999887532      34555554443   389999997 788877766

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.58  E-value=2.1e-14  Score=150.37  Aligned_cols=118  Identities=19%  Similarity=0.142  Sum_probs=94.1

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++. ..+|+.||+|++++.      ..+....|..++....+||||+++++++...+.+|+|||||+ 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            479999999999974 567899999999852      233567788788766799999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++.++..++   +.||.|||+.+++|||||    ++..++
T Consensus        81 g~L~~~i~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~  133 (316)
T cd05620          81 GDLMFHIQDKG------RFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDG  133 (316)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC
Confidence            69999987532      34555554433   389999999999988887    555544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.58  E-value=2.1e-14  Score=150.34  Aligned_cols=117  Identities=23%  Similarity=0.165  Sum_probs=93.6

Q ss_pred             eeEeecCceEEEEEE----eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          479 KEIAKGSNGTVVLEG----NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~----~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      +.||+|+||.||++.    ..+|+.||+|++...     ....+.+|+++|.++ +||||+++++++...+..|+|||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEV-NHPFIVKLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhC-CCCCcccEEEEEEcCCEEEEEEcCC
Confidence            579999999999864    356889999999862     223567899888887 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      + |+|.+++...      ..+++..+..++.   .||.|||+.+++|||||    ++..++
T Consensus        81 ~~~~L~~~l~~~------~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~  135 (318)
T cd05582          81 RGGDLFTRLSKE------VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEG  135 (318)
T ss_pred             CCCcHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCC
Confidence            9 6999999753      2345555444443   89999999999888887    555444

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.58  E-value=2e-14  Score=150.82  Aligned_cols=118  Identities=23%  Similarity=0.207  Sum_probs=91.7

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+|+.||+|++.+.      ....+.+|...+.+.++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            479999999999974 578999999999752      123455666555555599999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++..+..+   ++.||.|||+.+|+|||||    |+..++
T Consensus        81 g~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~  133 (323)
T cd05575          81 GELFFHLQRER------SFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQG  133 (323)
T ss_pred             CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCC
Confidence            69999987532      3445444443   3489999999999988887    555554

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.58  E-value=1.9e-14  Score=151.13  Aligned_cols=118  Identities=22%  Similarity=0.218  Sum_probs=91.8

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+|+.+|+|++.+.      ....+..|...+.+.++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            469999999999974 678999999999752      223556666555555599999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++..+..+   ++.||.|||+.+++|||||    |+..++
T Consensus        81 ~~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~  133 (325)
T cd05604          81 GELFFHLQRER------SFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQG  133 (325)
T ss_pred             CCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC
Confidence            69998887532      3444444443   3489999999999998888    555554

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.58  E-value=2.3e-14  Score=150.46  Aligned_cols=122  Identities=20%  Similarity=0.146  Sum_probs=97.8

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |.+.+.||+|+||+||++. ..+|+.||+|++.+.      ..+.+..|++++..+.+|++|+++++++...+..|+|||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            6778999999999999974 678999999999852      223567888888777567889999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||+ |+|.+++....      .+++..+..++.   .|+.|||+.+++|||||    ++..++
T Consensus        82 y~~~g~L~~~i~~~~------~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~  138 (323)
T cd05615          82 YVNGGDLMYHIQQVG------KFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEG  138 (323)
T ss_pred             CCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC
Confidence            999 69999987532      355555555444   89999999999998888    555554

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.58  E-value=2.1e-14  Score=144.92  Aligned_cols=116  Identities=22%  Similarity=0.226  Sum_probs=96.0

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      |++.+.||+|+||.||++...++..+|+|.+...  ..+.+.+|+++|.++ +||||+++++++...+..++||||++ |
T Consensus         6 ~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~iv~e~~~~~   84 (256)
T cd05114           6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKL-SHPKLVQLYGVCTQQKPLYIVTEFMENG   84 (256)
T ss_pred             cEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHC-CCCCceeEEEEEccCCCEEEEEEcCCCC
Confidence            7888999999999999987777778999988753  345788999999887 99999999999999999999999999 6


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.++++...     ..++......++.   .++.|||+.+++|||+|
T Consensus        85 ~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  127 (256)
T cd05114          85 CLLNYLRQRQ-----GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLA  127 (256)
T ss_pred             cHHHHHHhCc-----cCCCHHHHHHHHHHHHHHHHHHHHCCccccccC
Confidence            9999997532     2344444444433   89999999999888777

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.57  E-value=3.1e-14  Score=149.51  Aligned_cols=122  Identities=19%  Similarity=0.137  Sum_probs=95.8

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |.+.+.||+|+||.||++. ..+++.||||++.+.      ..+.+..|++++..+.+|++|+++++++...+.+|+|||
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (324)
T cd05587           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVME   81 (324)
T ss_pred             ceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEc
Confidence            7889999999999999984 567889999999752      234677888888777445678999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||+ |+|.+++....      .+.+..+..++   +.||.|||+.+|+|||||    |+..++
T Consensus        82 ~~~~g~L~~~~~~~~------~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~  138 (324)
T cd05587          82 YVNGGDLMYHIQQVG------KFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEG  138 (324)
T ss_pred             CCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCC
Confidence            999 69999997532      34444444443   389999999999888777    555444

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.57  E-value=3.2e-14  Score=149.34  Aligned_cols=122  Identities=19%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |.+.+.||+|+||.||++. ..+++.||||.+.+.      ..+.+..|.+++....+|++|+++++++...+..|+|||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05616           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVME   81 (323)
T ss_pred             ceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEc
Confidence            7788999999999999974 567889999998852      123466777777777678999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |++ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||    |++.++
T Consensus        82 ~~~~g~L~~~~~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~  138 (323)
T cd05616          82 YVNGGDLMYQIQQVG------RFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEG  138 (323)
T ss_pred             CCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCC
Confidence            999 69999987532      344555444443   89999999999888877    555554

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.57  E-value=2.6e-14  Score=149.65  Aligned_cols=118  Identities=19%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+++.||||+++..      ..+.+..|..++....+||||+++++++.+.+.+++||||++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            469999999999985 567889999999863      223566777777766699999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++.....+   ++.||.|||+.+++|||||    |++.++
T Consensus        81 g~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~  133 (316)
T cd05619          81 GDLMFHIQSCH------KFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDG  133 (316)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCC
Confidence            69999997532      2344444333   3489999999999988888    555554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.57  E-value=2.3e-14  Score=150.18  Aligned_cols=118  Identities=22%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++. ..+++.||+|++.+.      ....+.+|...+.+.++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            479999999999984 577899999999752      122456666554454599999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...      ..+.+..+..+   +..+|.|||+.+|+|||||    ++..++
T Consensus        81 ~~L~~~l~~~------~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~  133 (321)
T cd05603          81 GELFFHLQRE------RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQG  133 (321)
T ss_pred             CCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC
Confidence            6999888743      23444444333   3489999999999988888    555554

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.57  E-value=2.6e-14  Score=150.10  Aligned_cols=117  Identities=23%  Similarity=0.170  Sum_probs=92.3

Q ss_pred             eeEeecCceEEEEEEe----eCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          479 KEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.||+|+||.||++..    .+++.||||.+++.       ....+.+|+++|..+ +||||+++++++...+..|+|||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l-~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAV-KHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhC-CCCchhceeeEEecCCeEEEEEe
Confidence            5799999999999743    46889999999852       123567899988877 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |++ |+|.+++....      .+.+..+.   ..+..+|.|||+.+|+|||||    |+..++
T Consensus        81 ~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~  137 (323)
T cd05584          81 YLSGGELFMHLEREG------IFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQG  137 (323)
T ss_pred             CCCCchHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC
Confidence            999 69999997532      23333333   334489999999999888877    555554

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=99.57  E-value=2.5e-14  Score=153.30  Aligned_cols=159  Identities=18%  Similarity=0.237  Sum_probs=121.4

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC--ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGR--PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~--~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      ++..+++||+++.||.|+|+|+.+|+++|++....  ...++...  ..+  ..++.++.||.+||+|.++|.+ +|.++
T Consensus        64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~--~~~--G~i~~g~~~g~~y~ld~~~G~~-~W~~~  138 (370)
T COG1520          64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPIL--GSD--GKIYVGSWDGKLYALDASTGTL-VWSRN  138 (370)
T ss_pred             cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceE--EeC--CeEEEecccceEEEEECCCCcE-EEEEe
Confidence            36789999999999999999999999999988765  33333111  111  2344455699999999999999 99999


Q ss_pred             HHH--HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          122 AEE--YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       122 ~~~--~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                      ...  .+.+.|++. |+.||+++.++++|+||+.||+.+|++....+ . .   ..            .+..+.     .
T Consensus       139 ~~~~~~~~~~~v~~-~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~-~---~~------------~~~~~~-----~  195 (370)
T COG1520         139 VGGSPYYASPPVVG-DGTVYVGTDDGHLYALNADTGTLKWTYETPAP-L-S---LS------------IYGSPA-----I  195 (370)
T ss_pred             cCCCeEEecCcEEc-CcEEEEecCCCeEEEEEccCCcEEEEEecCCc-c-c---cc------------cccCce-----e
Confidence            998  344444455 99999999889999999999999999987642 1 0   00            011111     1


Q ss_pred             cccEEEEEee--eeEEEEEeCCCCceEEEEEec
Q 007199          200 IRQLVYIMRT--DYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       200 ~~~~v~igr~--d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      .++.||++..  ++.++|+|+.+|..+|+..+.
T Consensus       196 ~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~  228 (370)
T COG1520         196 ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVS  228 (370)
T ss_pred             ecceEEEecCCCcceEEEEEccCCcEeeeeeee
Confidence            3679999988  789999999999999996543

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.57  E-value=2.5e-14  Score=154.43  Aligned_cols=114  Identities=18%  Similarity=0.086  Sum_probs=94.2

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCc
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC  551 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~G  551 (613)
                      ..|++.+.||+|+||.||++ ...+++.||+|....   +.+.+|+++|.++ +||||+++++++......++|||++.+
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~---~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~lv~e~~~~  167 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR---GGTATEAHILRAI-NHPSIIQLKGTFTYNKFTCLILPRYKT  167 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh---hhhHHHHHHHHhC-CCCCCCCEeEEEEECCeeEEEEecCCC
Confidence            34999999999999999997 467899999997653   4578999999888 999999999999999999999999999


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++...+      .++...+..   .++.||.|||+.+|+|||||
T Consensus       168 ~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiK  209 (391)
T PHA03212        168 DLYCYLAAKR------NIAICDILAIERSVLRAIQYLHENRIIHRDIK  209 (391)
T ss_pred             CHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            9999987542      234443333   33489999999999877766

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.56  E-value=1.1e-14  Score=156.02  Aligned_cols=115  Identities=19%  Similarity=0.193  Sum_probs=93.8

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~  543 (613)
                      |+..+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|+++|..+ +||||+++++++...+     ..|
T Consensus         2 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           2 VEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFF-KHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhC-CCCCcCCHhheecCCCccccceEE
Confidence            6778899999999999975 578999999998752     234688999999887 9999999999998876     899


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||+.++|.+++...      ..+....+..++   +.||.|||+.+++|||||
T Consensus        81 lv~e~~~~~l~~~~~~~------~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk  130 (372)
T cd07853          81 VVTELMQSDLHKIIVSP------QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIK  130 (372)
T ss_pred             EEeeccccCHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence            99999999999888642      245555554444   389999999999887777

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.56  E-value=4.2e-15  Score=157.67  Aligned_cols=124  Identities=22%  Similarity=0.200  Sum_probs=102.1

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccch-----------HHHHHHHHHHHhcCC---CCcceeEEEEEEeC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHH-----------DVALKEIQNLIASDQ---HPNIVRWYGVESDQ  539 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~-----------~~~~~Ei~~L~~l~~---HpnIV~l~g~~~~~  539 (613)
                      |...+.||+|+||.|+.| .+.+..+|+||.|.++..           ...-.||++|..+ +   |+||++++++|+++
T Consensus       563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l-~~~sH~NIlKlLdfFEdd  641 (772)
T KOG1152|consen  563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATL-NKHSHENILKLLDFFEDD  641 (772)
T ss_pred             ceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHh-hhcCccchhhhhheeecC
Confidence            889999999999999998 567778899999987421           1456899999887 5   99999999999999


Q ss_pred             CEEEEEecCCC-c-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          540 DFVYLSLERCT-C-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       540 ~~~~LV~E~~~-G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +++||+||--. | +|+++|..+.   ......-..+.+++..+++|||..+|||||||    +++.+|
T Consensus       642 d~yyl~te~hg~gIDLFd~IE~kp---~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g  707 (772)
T KOG1152|consen  642 DYYYLETEVHGEGIDLFDFIEFKP---RMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNG  707 (772)
T ss_pred             CeeEEEecCCCCCcchhhhhhccC---ccchHHHHHHHHHHHhccccccccCceecccccccEEEecCC
Confidence            99999999887 8 9999998653   22222334455555589999999999999999    888887

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.56  E-value=3.7e-14  Score=145.31  Aligned_cols=118  Identities=24%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |...+.||+|+||.||++. ..++..||+|.++..     ..+.+.+|+.++.++ +||||+++++++..++..|+||||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL-QHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             ceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhc-CCCCEeeeEEEEeeCCeEEEEEec
Confidence            7788999999999999975 567899999998742     234688999988888 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|+|.+++....   ....++...+..++.   .||.|||..+++|||+|
T Consensus        81 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~  128 (285)
T cd07861          81 LSMDLKKYLDSLP---KGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLK  128 (285)
T ss_pred             CCCCHHHHHhcCC---CCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC
Confidence            9999999987542   223456655544443   89999999999988887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.56  E-value=5.3e-14  Score=155.86  Aligned_cols=120  Identities=16%  Similarity=0.121  Sum_probs=94.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeC-CcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYE-GRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~-g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|.+.+.||+|+||.||++. ..+ ++.||+|.+....   ...+.+|+++|..+ +|||||++++++...+..||||||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l-~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAAC-DHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEEECCEEEEEEEC
Confidence            38999999999999999974 344 6789999776532   23677899999887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.++|+....  ....+.+..+..+   ++.||+|||+.+|+|||||
T Consensus       147 ~~gg~L~~~l~~~~~--~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlk  196 (478)
T PTZ00267        147 GSGGDLNKQIKQRLK--EHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLK  196 (478)
T ss_pred             CCCCCHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcC
Confidence            99 699999875321  2223455444443   3489999999999888776

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.56  E-value=5.4e-14  Score=145.80  Aligned_cols=123  Identities=16%  Similarity=0.097  Sum_probs=99.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|...+.||+|+||.||++. ..+++.||+|.++..    ....+.+|++++.++ +||||+++++++...+..++||||
T Consensus         7 ~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           7 TYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL-KHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             ceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhc-CCCCcceEEEEEecCCeEEEEEec
Confidence            38999999999999999974 567899999998742    233677899999888 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++++|.+++....     ..+.+..+..++   +.+|.|||+.+++|||||    +++.++
T Consensus        86 ~~~~l~~~l~~~~-----~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~  141 (301)
T cd07873          86 LDKDLKQYLDDCG-----NSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERG  141 (301)
T ss_pred             cccCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCC
Confidence            9999999987632     234444444443   389999999999888777    555444

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.56  E-value=3.3e-14  Score=163.46  Aligned_cols=116  Identities=22%  Similarity=0.205  Sum_probs=95.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+++.||||+++...      ...+.+|+.++..+ +||||+++++++...+.+||||
T Consensus         5 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l-~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           5 EFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALS-KSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhc-CCCCcCeEEEEEEECCEEEEEE
Confidence            48899999999999999985 5578999999998532      24788899888666 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||. |+|.++++...      .+.+..+..++   +.||.|||..+|+|||||
T Consensus        84 Ey~~g~~L~~li~~~~------~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLK  131 (669)
T cd05610          84 EYLIGGDVKSLLHIYG------YFDEEMAVKYISEVALALDYLHRHGIIHRDLK  131 (669)
T ss_pred             eCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCcc
Confidence            9998 69999997532      34444444433   389999999999888887

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.56  E-value=2.2e-14  Score=150.69  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=91.6

Q ss_pred             EeeeEeec--CceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          477 FNKEIAKG--SNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       477 ~~~~LG~G--~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.++||+|  +|++||++ ...+|+.||+|++...     ..+.+.+|++++..+ +||||++++++|..++..++||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLF-NHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhc-CCCCeeeEEEEEEECCEEEEEEec
Confidence            45689999  78899997 4788999999999853     223577899888666 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.+++..+.    ...++...+..++   +.||.|||+.+++|||||
T Consensus        81 ~~~~~l~~~~~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlk  128 (327)
T cd08227          81 MAYGSAKDLICTHF----MDGMSELAIAYILQGVLKALDYIHHMGYVHRSVK  128 (327)
T ss_pred             cCCCcHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC
Confidence            99 79999997642    2234444444444   389999999999888776

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.56  E-value=5.6e-15  Score=156.21  Aligned_cols=124  Identities=17%  Similarity=0.210  Sum_probs=104.3

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE-EEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF-VYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~-~~LV~  546 (613)
                      .|...+.+|+|+||.++.. +..++..+++|.+...     .++...+|+.++.++ +|||||.+.+.|..++. ++|||
T Consensus         5 ~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~-~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    5 NYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKL-LHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             hhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhc-cCCCeeeeccchhcCCceEEEEE
Confidence            4788899999999999985 5788889999998852     234788999999886 99999999999999988 99999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +||+ |+|.+.|...+    ...++++.+.+++.   .|+.|||+..|+|||||    |+.++.
T Consensus        84 ~Y~eGg~l~~~i~~~k----~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~  143 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQK----GVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDK  143 (426)
T ss_pred             eecCCCCHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccC
Confidence            9999 69999999763    34566776666666   79999999999998888    666554

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.56  E-value=4.8e-14  Score=148.04  Aligned_cols=121  Identities=19%  Similarity=0.174  Sum_probs=93.6

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHh--cCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIA--SDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~--l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |.+.+.||+|+||.||++. ..+++.||||++++.      ..+.+.+|++++..  .++||||+++++++...+..|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            5678899999999999974 677899999999852      22356677665532  24899999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|..+++..       .+.+..+..++.   .|+.|||+.+++|||||    ++..++
T Consensus        81 ~E~~~~~~L~~~~~~~-------~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~  138 (324)
T cd05589          81 MEYAAGGDLMMHIHTD-------VFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEG  138 (324)
T ss_pred             EcCCCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCC
Confidence            99999 6998887532       344444444433   89999999999988887    555554

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.56  E-value=4.4e-14  Score=148.83  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=95.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|+..+.||+|+||.||++. ..++..+|+|.+...    ..+.+.+|+++|.++ +||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC-CCCCCCeEEEEEEECCEEEEEee
Confidence            348999999999999999974 567889999998753    234688999999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      |++ |+|.+++....      .+++..+..++.   .++.|||.. +|+|||||
T Consensus        84 ~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlk  131 (331)
T cd06649          84 HMDGGSLDQVLKEAK------RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVK  131 (331)
T ss_pred             cCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCC
Confidence            999 69999997532      344555444443   899999975 57776655

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.56  E-value=3.7e-14  Score=149.63  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|+..+.||+|+||.||++. ..++..+|+|.+...    ..+.+.+|+++|.++ +||||++++++|...++.+||||
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC-CCCcccceeEEEEECCEEEEEEe
Confidence            348899999999999999974 567889999988753    224688999999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcC-Cceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~-~iiHrDlK  596 (613)
                      |++ |+|.++++...      .+++..+..+   ++.++.|||.. +++|||||
T Consensus        84 ~~~~~~L~~~l~~~~------~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlk  131 (333)
T cd06650          84 HMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK  131 (333)
T ss_pred             cCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCC
Confidence            999 69999997532      2344444333   33899999974 68777776

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.56  E-value=2e-16  Score=152.11  Aligned_cols=123  Identities=19%  Similarity=0.116  Sum_probs=97.5

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .+.+.|++.++||+|.|+.||++ ...+|+.+|+|++..     ...+++.+|+++-..+ +|||||+|+..+....+.|
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~L-qHP~IvrL~~ti~~~~~~y   86 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL-QHPNIVRLHDSIQEESFHY   86 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhc-CCCcEeehhhhhcccceeE
Confidence            34455888899999999999997 688999999887763     4667899999766555 9999999999999999999


Q ss_pred             EEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+|+|.| +|..-|-.+.   -.+........+++.+++.|+|.++|+|||+|
T Consensus        87 lvFe~m~G~dl~~eIV~R~---~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvk  137 (355)
T KOG0033|consen   87 LVFDLVTGGELFEDIVARE---FYSEADASHCIQQILEALAYCHSNGIVHRDLK  137 (355)
T ss_pred             EEEecccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCceeccCC
Confidence            99999995 8876555431   22223334556666699999999999998886

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.55  E-value=4.4e-14  Score=148.39  Aligned_cols=118  Identities=23%  Similarity=0.182  Sum_probs=89.9

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+++.||+|++.+..      ...+.+|...+.+.++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            469999999999974 5678899999997521      22445555554454599999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+.+..+.   ..++.||.|||+.+|+|||||    ++..++
T Consensus        81 ~~L~~~~~~~~------~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~  133 (325)
T cd05602          81 GELFYHLQRER------CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG  133 (325)
T ss_pred             CcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC
Confidence            69999997532      23344433   334489999999999998887    555544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.55  E-value=4.4e-14  Score=148.61  Aligned_cols=118  Identities=18%  Similarity=0.108  Sum_probs=94.6

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+++.||+|++++.      ..+.+.+|+.++.++.+||||+++++++...+.+|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            469999999999974 567889999999863      223577899888887789999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++...+      .+++..+..++.   .|+.|||+.+++|||||    ++..++
T Consensus        81 ~~L~~~~~~~~------~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~  133 (327)
T cd05617          81 GDLMFHMQRQR------KLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADG  133 (327)
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCC
Confidence            69999887532      355555554443   89999999999888877    444444

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.55  E-value=4.5e-14  Score=142.84  Aligned_cols=119  Identities=20%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|++.+.||+|+||.||++...++..||+|.+...  ..+.+.+|+.++.++ +|+||+++++++...+..+++|||++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTL-QHDKLVRLYAVVTKEEPIYIITEYMA   84 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhC-CCCCeeeEEEEEcCCCCcEEEEecCC
Confidence            348999999999999999987777888999998753  345788999999887 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++++...    ....+......++   +.++.|||..+++|||||
T Consensus        85 ~~~L~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~  130 (261)
T cd05072          85 KGSLLDFLKSDE----GGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLR  130 (261)
T ss_pred             CCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence             69999997642    2234444444333   389999999999888777

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.55  E-value=3.7e-14  Score=155.74  Aligned_cols=116  Identities=16%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +..|.+.+.||+|+||.||++. ..+++.||||....   ..+.+|+++|.++ +|+|||++++++...+..+||||++.
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~---~~~~~E~~iL~~L-~HpnIv~l~~~~~~~~~~~lv~e~~~  243 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY---ASSVHEARLLRRL-SHPAVLALLDVRVVGGLTCLVLPKYR  243 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc---cCHHHHHHHHHHC-CCCCCCcEEEEEEECCEEEEEEEccC
Confidence            3458999999999999999974 56788999996442   3467899999888 99999999999999999999999999


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++....     ..+....+.+++.   .+|.|||+.+|+|||||
T Consensus       244 ~~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLK  287 (461)
T PHA03211        244 SDLYTYLGARL-----RPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIK  287 (461)
T ss_pred             CCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCC
Confidence            99999987532     2355555554444   89999999999888877

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.55  E-value=4.9e-15  Score=136.41  Aligned_cols=122  Identities=25%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccch-----HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHH-----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~-----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |.-.+.||+|.||+|+++. ..+++.||+|+++....     ....+||-+|+.+ +|.|||++++....+..+-||+||
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkel-khknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL-KHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHh-hhcceeehhhhhccCceeEEeHHH
Confidence            4456789999999999975 77889999999986332     2688999777777 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |..+|..+.....     ..+.......++.   .|+.++|+.++.|||+|    ++++||
T Consensus        83 cdqdlkkyfdsln-----g~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ng  138 (292)
T KOG0662|consen   83 CDQDLKKYFDSLN-----GDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNG  138 (292)
T ss_pred             hhHHHHHHHHhcC-----CcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCC
Confidence            9999999988643     3344433333333   89999999999888887    666666

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.55  E-value=8e-14  Score=143.48  Aligned_cols=124  Identities=18%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|+..+.||+|+||.||++. ..+++.||+|.+...    ....+.+|++++.++ +|+||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   83 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDL-KHANIVTLHDIIHTKKTLTLVFE   83 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhC-CCcceeeEEEEEecCCeEEEEEe
Confidence            348899999999999999975 557899999998752    223567899999888 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |++++|.+++....     ..+....+..++   +.||.|||+.+++|||||    ++..++
T Consensus        84 ~~~~~L~~~~~~~~-----~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~  140 (291)
T cd07844          84 YLDTDLKQYMDDCG-----GGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERG  140 (291)
T ss_pred             cCCCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCC
Confidence            99999999987642     234444444443   389999999999988888    555544

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.55  E-value=2.1e-14  Score=154.11  Aligned_cols=88  Identities=26%  Similarity=0.294  Sum_probs=74.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|++.+.||+|+||.||++.      ..++..||||+++...    .+.+.+|++++..+.+|+||++++++|...+..
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~  117 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPV  117 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCe
Confidence            348999999999999999863      2234579999997532    346789999997776899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHh
Q 007199          543 YLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~  560 (613)
                      ++|||||+ |+|.++++..
T Consensus       118 ~lv~ey~~~g~L~~~l~~~  136 (374)
T cd05106         118 LVITEYCCYGDLLNFLRKK  136 (374)
T ss_pred             EEeHhhccCCcHHHHHHhh
Confidence            99999999 7999999754

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.55  E-value=2.9e-14  Score=149.01  Aligned_cols=116  Identities=20%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .|+..+.||+|+||.||++. ..++.    .||+|.++..    ..+++.+|+.++..+ +||||++++++|... ..++
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEcCC-Ccee
Confidence            38899999999999999975 34444    4899998753    234788899888777 999999999999865 5679


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||++ |+|.++++...     ..++...+.+++   +.||.|||+.+++|||||
T Consensus        86 v~e~~~~g~l~~~l~~~~-----~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlk  136 (316)
T cd05108          86 ITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLA  136 (316)
T ss_pred             eeecCCCCCHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHHHhcCeeccccc
Confidence            999999 79999998642     234444444433   389999999999887777

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.55  E-value=3.5e-14  Score=145.62  Aligned_cols=121  Identities=19%  Similarity=0.154  Sum_probs=93.6

Q ss_pred             EEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |++.+.||+|+||+||++.     ..++..||+|.+...    ....+.+|++++.++ +||||+++++++...+..|++
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv   85 (283)
T cd05090           7 VRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAEL-HHPNIVCLLGVVTQEQPVCML   85 (283)
T ss_pred             ceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC-CCCCeeeEEEEEecCCceEEE
Confidence            7888999999999999974     245678999999752    224688999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCC-----------ccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSF-----------EEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~-----------~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++.......           ....++......++   ..++.|||+.+++|||||
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlk  151 (283)
T cd05090          86 FEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLA  151 (283)
T ss_pred             EEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccc
Confidence            99999 69999997532100           01223444333333   389999999998887777

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.55  E-value=6.4e-14  Score=143.39  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=96.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|++.+.||+|+||.||++. ..+|+.||+|+++...    ...+..|+..+.+..+||||+++++++...+..|++|||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            47889999999999999974 6679999999988632    235666777666666999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      ++|+|.+++.....  ....+++..+..++.   .++.|||++ +++|||||
T Consensus        82 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlk  131 (283)
T cd06617          82 MDTSLDKFYKKVYD--KGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVK  131 (283)
T ss_pred             hcccHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCC
Confidence            99999999876432  234566666655554   899999987 88777777

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.55  E-value=5.2e-14  Score=147.45  Aligned_cols=118  Identities=20%  Similarity=0.146  Sum_probs=93.7

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||+||++. ..+++.||||++++.      ..+.+.+|++++..+.+||||+++++++...+.+|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            469999999999974 567889999999852      234567888888777689999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++..+..++   ..+|.|||+.+++|||||    ++..++
T Consensus        81 ~~L~~~~~~~~------~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~  133 (318)
T cd05570          81 GDLMFHIQRSG------RFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEG  133 (318)
T ss_pred             CCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCC
Confidence            69999887532      34555544443   389999999999888877    555444

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.55  E-value=4.6e-14  Score=144.91  Aligned_cols=113  Identities=19%  Similarity=0.072  Sum_probs=90.5

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||+||++. ..+++.||+|.+...      ..+.+..|++++..+ +||||+++.+++...+..++|||||+ |+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l-~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKV-HSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhC-CCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            6999999999974 678999999998752      224567899888777 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++.....  ....+++..+..++   +.++.|||+.+++|||||
T Consensus        80 L~~~~~~~~~--~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  124 (280)
T cd05608          80 LRYHIYNVDE--ENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLK  124 (280)
T ss_pred             HHHHHHhccc--cCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            9988865321  22345555554443   389999999999888887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.54  E-value=6.2e-14  Score=142.34  Aligned_cols=116  Identities=28%  Similarity=0.327  Sum_probs=90.2

Q ss_pred             EEeeeEeecCceEEEEEEee-----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          476 VFNKEIAKGSNGTVVLEGNY-----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~~-----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      ...+.||.|.||.||+|...     .+..|+||.++..    ..+.+.+|++.+.++ +||||++++|++...+..++||
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL-RHPNIVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH-SBTTBE-EEEEEESSSSEEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccc-cccccccccccccccccccccc
Confidence            46789999999999998644     3568999999652    246899999999888 9999999999999888899999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.++|+..    ....++......++.   .||.|||+.+++|+||+
T Consensus        81 e~~~~g~L~~~L~~~----~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~  130 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSK----NKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLS  130 (259)
T ss_dssp             E--TTEBHHHHHHHT----CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             ccccccccccccccc----ccccccccccccccccccccccccccccccccccc
Confidence            9999 7999999975    123344444444443   89999999998887776

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.54  E-value=6.1e-14  Score=155.56  Aligned_cols=126  Identities=22%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEe-----CCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESD-----QDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-----~~~~~L  544 (613)
                      +.+++.++||+|.+|.||++ ++.+++.+|+|++..  ...++...|.++|+....|||++.++|+|..     ++.++|
T Consensus        19 d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWL   98 (953)
T KOG0587|consen   19 DIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWL   98 (953)
T ss_pred             CccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEE
Confidence            34889999999999999996 689999999999886  4556788889899888899999999999984     468999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||||. ||..|+++..    ....+.+.|++.++.   .|+.|||...+||||+|    |+..+|
T Consensus        99 VMEfC~gGSVTDLVKn~----~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~  160 (953)
T KOG0587|consen   99 VMEFCGGGSVTDLVKNT----KGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENA  160 (953)
T ss_pred             EeeccCCccHHHHHhhh----cccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccC
Confidence            999999 7999999875    355677888877776   89999999999999998    666665

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.54  E-value=6.4e-14  Score=141.72  Aligned_cols=117  Identities=21%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc--hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .|.+.+.||+|+||+||++....+..+|+|.+....  .+.+.+|++++.++ +||||+++++++...+..+++|||++ 
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKL-SHEKLVQLYGVCTKQRPIYIVTEYMSN   83 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcC-CCCCeeeEEEEEccCCCcEEEEEcCCC
Confidence            388899999999999999866566679999988632  45789999999887 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++....     ..+++..+..++.   .++.|||+.+++|+|||
T Consensus        84 ~~l~~~i~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  127 (256)
T cd05113          84 GCLLNYLREHG-----KRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLA  127 (256)
T ss_pred             CcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC
Confidence            69999997632     2345555444443   89999999999888777

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.54  E-value=1.9e-13  Score=147.64  Aligned_cols=117  Identities=17%  Similarity=0.141  Sum_probs=95.1

Q ss_pred             cCceEEEeeeEeecCceEEEEEE---eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG---NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~---~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +...|.+.+.||+|+||.||++.   ...++.||+|.+...  ..+.+|+++|.++ +||||+++++++......|++||
T Consensus        90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~--~~~~~E~~il~~l-~h~~iv~~~~~~~~~~~~~lv~e  166 (392)
T PHA03207         90 VRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG--KTPGREIDILKTI-SHRAIINLIHAYRWKSTVCMVMP  166 (392)
T ss_pred             ccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc--ccHHHHHHHHHhc-CCCCccceeeeEeeCCEEEEEeh
Confidence            34569999999999999999974   345678999988753  3457899999887 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++.++|.+++...      ..+++.++..++.   .||.|||..+|+|||||
T Consensus       167 ~~~~~l~~~l~~~------~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlk  212 (392)
T PHA03207        167 KYKCDLFTYVDRS------GPLPLEQAITIQRRLLEALAYLHGRGIIHRDVK  212 (392)
T ss_pred             hcCCCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9999999999532      2455555554443   89999999999888777

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.54  E-value=4.8e-14  Score=152.57  Aligned_cols=88  Identities=24%  Similarity=0.277  Sum_probs=74.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||+|..      ..+..||||+++..    ..+.+.+|+++|.++..||||++++++|...+..
T Consensus        37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~  116 (400)
T cd05105          37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPI  116 (400)
T ss_pred             cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCce
Confidence            4488999999999999999742      22347999999752    2347889999998884599999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHh
Q 007199          543 YLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~  560 (613)
                      |||||||+ |+|.++|+..
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         117 YIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             EEEEEecCCCcHHHHHHHh
Confidence            99999999 7999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.54  E-value=1e-13  Score=142.54  Aligned_cols=125  Identities=22%  Similarity=0.226  Sum_probs=93.8

Q ss_pred             eEEEeeeEeecCceEEEEEEe--eCCcEEEEEEeecc-----chHHHHHHHHHHHhc--CCCCcceeEEEEEEe-----C
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN--YEGRSVAVKRLVKT-----HHDVALKEIQNLIAS--DQHPNIVRWYGVESD-----Q  539 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~--~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~~-----~  539 (613)
                      .|.+.+.||+|+||+||++..  .+++.||+|+++..     ....+.+|+.++..+  .+||||++++++|..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            478899999999999999853  35788999998752     223566788777654  379999999999863     3


Q ss_pred             CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          540 DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       540 ~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ..+++||||++|+|.+++....    ...+++..+..++.   .||.|||+.+++|||||    |++.++
T Consensus        82 ~~~~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~  147 (290)
T cd07862          82 TKLTLVFEHVDQDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG  147 (290)
T ss_pred             CcEEEEEccCCCCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCC
Confidence            4689999999999999997642    22345555544443   89999999999888777    554444

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.53  E-value=6.7e-14  Score=161.71  Aligned_cols=122  Identities=20%  Similarity=0.167  Sum_probs=95.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.++||+|+||.||++. ..+|+.||+|+++..      ..+.+.+|++++.++ +||||+++++++...+..|++|
T Consensus         3 rYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L-~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          3 RYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADL-IHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhC-CCcCcCeEEEEEeeCCEEEEEE
Confidence            48899999999999999984 567899999999752      134688999999887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCc-----cccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFE-----EQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~-----~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++........     ........+.+   .+..||.|||+.+|+|||||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLK  140 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLK  140 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCc
Confidence            9999 599999975321100     11122222233   33389999999999888776

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.53  E-value=4.7e-14  Score=144.47  Aligned_cols=111  Identities=11%  Similarity=-0.038  Sum_probs=86.7

Q ss_pred             eEeecCceEEEEEEee-C------------------------CcEEEEEEeeccch---HHHHHHHHHHHhcCCCCccee
Q 007199          480 EIAKGSNGTVVLEGNY-E------------------------GRSVAVKRLVKTHH---DVALKEIQNLIASDQHPNIVR  531 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~~-~------------------------g~~VAVK~l~~~~~---~~~~~Ei~~L~~l~~HpnIV~  531 (613)
                      .||+|+||.||++... +                        ...||+|.+.....   ..+.+|++++..+ +||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l-~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQV-SHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcC-CCCCeee
Confidence            6899999999996421 1                        13589999876433   3677888777666 9999999


Q ss_pred             EEEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          532 WYGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       532 l~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++++......++|||||+ |+|.+++...     ...++..+..+++.   .||.|||+.+++|||||
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlk  144 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKE-----KGRVPVAWKITVAQQLASALSYLEDKNLVHGNVC  144 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCC
Confidence            9999999999999999999 6999988753     23456666665554   89999999998877766

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.53  E-value=1.2e-13  Score=142.26  Aligned_cols=117  Identities=21%  Similarity=0.119  Sum_probs=95.6

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |+..+.||+|+||+||++. ..+++.+|+|.+....      ...+.+|+++|.++ +|+||+++++++...+..+++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l-~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKV-NSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCcCceeEEEEEecCCEEEEEEE
Confidence            6677899999999999974 5688999999987532      23577899999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |+|.+++....    ...++...+..++.   .++.|||+.+|+|||||
T Consensus        81 ~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dik  129 (285)
T cd05632          81 IMNGGDLKFHIYNMG----NPGFEEERALFYAAEILCGLEDLHRENTVYRDLK  129 (285)
T ss_pred             eccCccHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC
Confidence            999 69998887532    22455555555444   89999999999988888

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.53  E-value=6.9e-15  Score=146.31  Aligned_cols=113  Identities=18%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             eeeEeecCceEEEEE-EeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          478 NKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      .++||+|+|+.|-.| .+.+|.++|||++.+.   .+..+.+|++++.++..|+||++|+++|++++..|||||-|. |.
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGp  162 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGP  162 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCch
Confidence            467999999999987 5899999999999873   455899999999999999999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |...|++++      .+.+..+.+++.   .||.+||.++|.|||+|
T Consensus       163 lLshI~~~~------~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlK  203 (463)
T KOG0607|consen  163 LLSHIQKRK------HFNEREASRVVKDIASALDFLHTKGIAHRDLK  203 (463)
T ss_pred             HHHHHHHhh------hccHHHHHHHHHHHHHHHHHHhhcCcccccCC
Confidence            999998654      556666665555   89999999999988876

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.53  E-value=9.7e-14  Score=140.51  Aligned_cols=119  Identities=18%  Similarity=0.125  Sum_probs=97.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...+++.||+|.++..  ..+.+.+|++++.++ +||||+++++++...+..+++|||++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKL-RHPKLIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHC-CCCCccceeEEEecCCCeeeeeeccc
Confidence            348899999999999999987666788999998863  345789999999888 99999999999999999999999997


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ...++......++.   .++.+||+.+++|||||
T Consensus        85 ~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  130 (261)
T cd05068          85 YGSLLEYLQGGA----GRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLA  130 (261)
T ss_pred             CCcHHHHHhccC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCC
Confidence             69999997532    22345555555443   89999999999887766

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.53  E-value=9.5e-15  Score=154.53  Aligned_cols=113  Identities=19%  Similarity=0.252  Sum_probs=90.0

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccH
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSL  553 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL  553 (613)
                      +..++.||+|+-|.||+ +...++.||||+++.    .-..+|..|+++ +||||+.+.|+|.....+|||||||+ |-|
T Consensus       126 IsELeWlGSGaQGAVF~-Grl~netVAVKKV~e----lkETdIKHLRkL-kH~NII~FkGVCtqsPcyCIiMEfCa~GqL  199 (904)
T KOG4721|consen  126 ISELEWLGSGAQGAVFL-GRLHNETVAVKKVRE----LKETDIKHLRKL-KHPNIITFKGVCTQSPCYCIIMEFCAQGQL  199 (904)
T ss_pred             hhhhhhhccCcccceee-eeccCceehhHHHhh----hhhhhHHHHHhc-cCcceeeEeeeecCCceeEEeeeccccccH
Confidence            34467899999999998 456678999998874    223456677777 99999999999999999999999999 999


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          554 NDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       554 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|+..+.  ....+-.+|...+. .||+|||.+.|||||||
T Consensus       200 ~~VLka~~~--itp~llv~Wsk~IA-~GM~YLH~hKIIHRDLK  239 (904)
T KOG4721|consen  200 YEVLKAGRP--ITPSLLVDWSKGIA-GGMNYLHLHKIIHRDLK  239 (904)
T ss_pred             HHHHhccCc--cCHHHHHHHHHHhh-hhhHHHHHhhHhhhccC
Confidence            999996431  11222345555444 79999999999999999

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.53  E-value=9.9e-14  Score=144.54  Aligned_cols=122  Identities=17%  Similarity=0.146  Sum_probs=98.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|++.+.||+|+||.||++. ..++..+|+|.+...    ....+.+|++++.++ +||||+++++++...+..++||||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHEC-NSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEeeCCEEEEEeec
Confidence            38889999999999999974 667889999988753    224688999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK----llh~dg  602 (613)
                      ++ |+|.++++..      ..+++.+...++.   .+|.|||+ .+++|||+|    |+..++
T Consensus        81 ~~~~~L~~~l~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~  137 (308)
T cd06615          81 MDGGSLDQVLKKA------GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRG  137 (308)
T ss_pred             cCCCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCC
Confidence            99 5999999753      2345555544444   89999997 588888887    554443

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.53  E-value=1e-13  Score=139.64  Aligned_cols=115  Identities=28%  Similarity=0.354  Sum_probs=93.6

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchH-----HHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~-----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|+||+||++. ..+++.+|+|++.....+     ...+|+..+.++ +||||+++++++...+..++||||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRL-RHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHH-TBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccc-cccccccccccccccccccccccc
Confidence            6788999999999999985 566779999999975433     234588888888 999999999999999999999999


Q ss_pred             CCc-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++ +|.+++....      .++...+..++.   .+|.+||+.+++|||||
T Consensus        80 ~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dik  125 (260)
T PF00069_consen   80 CPGGSLQDYLQKNK------PLSEEEILKIAYQILEALAYLHSKGIVHRDIK  125 (260)
T ss_dssp             ETTEBHHHHHHHHS------SBBHHHHHHHHHHHHHHHHHHHHTTEEESSBS
T ss_pred             cccccccccccccc------cccccccccccccccccccccccccccccccc
Confidence            995 9999998432      334444444443   89999999999887765

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.53  E-value=6.9e-14  Score=149.03  Aligned_cols=117  Identities=26%  Similarity=0.211  Sum_probs=92.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      +.+.|...+.||+|+||.||++. ..+|+.||||++...     ....+.+|+.++..+ +||||+++++++...+    
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~   97 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCV-NHKNIISLLNVFTPQKSLEE   97 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhC-CCCCEeeeeeeeccCCCccc
Confidence            33569999999999999999974 677899999998752     334678999888777 9999999999987543    


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                        ..|+||||++++|.+.++..        ++...+   ...++.||.|||+.+|+|||||
T Consensus        98 ~~~~~lv~e~~~~~l~~~~~~~--------~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlk  150 (359)
T cd07876          98 FQDVYLVMELMDANLCQVIHME--------LDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  150 (359)
T ss_pred             cceeEEEEeCCCcCHHHHHhcc--------CCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence              57999999999888877531        233333   3344489999999999888877

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.53  E-value=1.4e-13  Score=141.68  Aligned_cols=117  Identities=21%  Similarity=0.101  Sum_probs=94.3

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |+..+.||+|+||.||++ ...+++.||||.+...      ..+.+.+|+.++.++ +|+||+++++.+...+..++|||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l-~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKV-NSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhC-CCCCeeeeeEEEecCCEEEEEEE
Confidence            667789999999999997 4678999999998752      123567899888777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |+|.+++....    ...+++.....+   ++.++.|||+.+++|||||
T Consensus        81 ~~~g~~L~~~l~~~~----~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dik  129 (285)
T cd05630          81 LMNGGDLKFHIYHMG----EAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLK  129 (285)
T ss_pred             ecCCCcHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC
Confidence            999 69999987542    223444444443   3389999999999988887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=2.1e-14  Score=145.84  Aligned_cols=126  Identities=21%  Similarity=0.281  Sum_probs=98.8

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEe-----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESD-----  538 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-----  538 (613)
                      .+...|...+.||+|+||.|+.+ ...+|+.||+|++..     ...++..+|+..|+.+ +|+||+.+++.+..     
T Consensus        19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~-~HeNIi~l~di~~p~~~~~   97 (359)
T KOG0660|consen   19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHL-RHENIIGLLDIFRPPSRDK   97 (359)
T ss_pred             eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHh-cCCCcceEEeecccccccc
Confidence            34455666889999999999997 588899999999884     2344788999999888 89999999999876     


Q ss_pred             CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          539 QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       539 ~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      -+.+|+|+|+|+-+|.+.|+...      .+..+.+..   ++..|++|+|+.+++|||+|       |+|+|+
T Consensus        98 f~DvYiV~elMetDL~~iik~~~------~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLK-------PsNll~  158 (359)
T KOG0660|consen   98 FNDVYLVFELMETDLHQIIKSQQ------DLTDDHAQYFLYQILRGLKYIHSANVIHRDLK-------PSNLLL  158 (359)
T ss_pred             cceeEEehhHHhhHHHHHHHcCc------cccHHHHHHHHHHHHHhcchhhcccccccccc-------hhheee
Confidence            34799999999999999998542      244433333   33389999999999887765       566555

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=99.53  E-value=1.5e-13  Score=147.22  Aligned_cols=164  Identities=20%  Similarity=0.303  Sum_probs=122.3

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH--
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA--  122 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~--  122 (613)
                      ..++.+|+|+.||.+||+|..||+++|+++.+. +.+..  .+...  +..++..+.||.+|++++.+|.+ +|.+.+  
T Consensus       109 ~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~--~~v~~--~~~v~~~s~~g~~~al~~~tG~~-~W~~~~~~  183 (370)
T COG1520         109 GSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS--PPVVG--DGTVYVGTDDGHLYALNADTGTL-KWTYETPA  183 (370)
T ss_pred             EeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec--CcEEc--CcEEEEecCCCeEEEEEccCCcE-EEEEecCC
Confidence            367999999999999999999999999999888 33333  11122  23555555799999999999999 999666  


Q ss_pred             --HHHhhhCceeecCCcEEEEee--cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          123 --EEYIRRMPYISKDGGVTLGAM--KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       123 --~~~v~~sP~~~~dg~v~~Gs~--~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                        ...+.++|.+. +|.+|+|..  ++.++++|+.+|..+|.......+......  ..    +      .+....+   
T Consensus       184 ~~~~~~~~~~~~~-~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~--~~----~------~~~~~~v---  247 (370)
T COG1520         184 PLSLSIYGSPAIA-SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS--TT----P------AVDGGPV---  247 (370)
T ss_pred             ccccccccCceee-cceEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccc--cc----c------cccCceE---
Confidence              45677788866 999999998  788999999999999996433322110000  00    0      0111111   


Q ss_pred             ccccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          199 RIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       199 ~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      ..++.+|.+..++.++|+|..+|+++|+....
T Consensus       248 ~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         248 YVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            13567899999999999999999999999997

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.52  E-value=6.4e-14  Score=140.97  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      +.||+|+||.||++. ..+++.+|+|.+...    ....+.+|++++.++ +||||+++++++...+..++||||++ |+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQY-SHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            468999999999974 568999999987653    234788999988887 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.++++...     ..+++..+..++   ..++.|||+.+++|||||
T Consensus        80 L~~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~  121 (252)
T cd05084          80 FLTFLRTEG-----PRLKVKELIQMVENAAAGMEYLESKHCIHRDLA  121 (252)
T ss_pred             HHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            999997532     234444433333   389999999999888776

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.52  E-value=1.2e-13  Score=139.85  Aligned_cols=118  Identities=21%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|++.++||+|+||.||++...+++.||+|.+...  ..+.+.+|++++.++ +|+||+++++++. .+..+++|||++
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQL-QHPRLVRLYAVVT-QEPIYIITEYME   83 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhc-CCcCeeeEEEEEc-cCCcEEEEEcCC
Confidence            458899999999999999988778899999999863  345789999988887 9999999999874 567899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ...++......++   +.++.|||+.+++|||||
T Consensus        84 ~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~  129 (260)
T cd05067          84 NGSLVDFLKTPE----GIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLR  129 (260)
T ss_pred             CCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHhcCCeeccccc
Confidence             69999987542    2234544444433   389999999998887777

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.52  E-value=8.9e-14  Score=141.16  Aligned_cols=116  Identities=21%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .|++.+.||+|+||.||++. ..+++.||+|++...   ..+.+.+|+.++.++ +||||+++++++...+..++||||+
T Consensus        10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~-~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646          10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKEC-KHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhc-CCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            48889999999999999975 578899999998753   334678899888777 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.++++...      .+++..+.   ..++.++.|||+.+++|||+|
T Consensus        89 ~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  133 (267)
T cd06646          89 GGGSLQDIYHVTG------PLSELQIAYVCRETLQGLAYLHSKGKMHRDIK  133 (267)
T ss_pred             CCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9 69999987532      23444443   344489999999999888877

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.52  E-value=1e-13  Score=140.91  Aligned_cols=117  Identities=21%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             eEEEeeeEeecCceEEEEEEe-eC---CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-YE---GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-~~---g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +|++.+.||+|+||.||++.. .+   +..+|+|.++..    ..+.+.+|+.++.++ +||||+++++++...+..++|
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           5 CIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQF-DHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEecCCccEEE
Confidence            478899999999999999753 22   337999998753    234788999988887 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....     ..++...+.+++   +.++.+||+.+++|||+|
T Consensus        84 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlk  133 (267)
T cd05066          84 TEYMENGSLDAFLRKHD-----GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLA  133 (267)
T ss_pred             EEcCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhc
Confidence            99999 69999997632     234444444433   389999999999888877

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.52  E-value=2.7e-14  Score=151.78  Aligned_cols=120  Identities=21%  Similarity=0.147  Sum_probs=92.8

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |+..+.||+|+||.||++. ..+++.||||.+....    .+.+.+|+++|..+ +|+||+++++++...+.+++|||||
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~  154 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDV-NHPNVVKCHDMFDHNGEIQVLLEFM  154 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhC-CCCCcceeeeEeccCCeEEEEEecC
Confidence            6777899999999999974 5678999999987532    34688999999887 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      . |+|.+....       .......+.+.++.+|.|||+.+++|||||    |+..++
T Consensus       155 ~~~~L~~~~~~-------~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~  205 (353)
T PLN00034        155 DGGSLEGTHIA-------DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAK  205 (353)
T ss_pred             CCCcccccccC-------CHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCC
Confidence            9 588543211       111112234444589999999999888887    555444

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.52  E-value=1.6e-13  Score=139.18  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=96.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||.||++. ..+++.||||.++..      ....+.+|++++.++ +||||+++++++...+..+++|
T Consensus         3 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           3 NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQL-NHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             ceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhC-CCcceeeeeeeEEECCeEEEEE
Confidence            48899999999999999974 668899999987641      223678899999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.+++.....  ....+++..+..++.   .|+.|||+.+++|||||
T Consensus        82 e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~  133 (267)
T cd08228          82 ELADAGDLSQMIKYFKK--QKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIK  133 (267)
T ss_pred             EecCCCcHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCC
Confidence            9999 699998875421  123345555544443   89999999999887777

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.52  E-value=1.5e-13  Score=141.80  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|+..+.||+|+||.||++. ..+|+.||+|.+...     ..+.+.+|++++.++ +||||+++++++...+..|+|||
T Consensus         3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEM-QHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhc-cCCCEeeEEEEEecCCeEEEEEe
Confidence            48889999999999999975 567899999988752     234688899999888 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++++|.+++....    .....+.++..   .++.||.|||+.+++|||||
T Consensus        82 ~~~~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~  129 (294)
T PLN00009         82 YLDLDLKKHMDSSP----DFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLK  129 (294)
T ss_pred             cccccHHHHHHhCC----CCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence            99999988886532    22234444433   33489999999998777666

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.52  E-value=1.7e-13  Score=141.32  Aligned_cols=122  Identities=24%  Similarity=0.239  Sum_probs=99.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+++.||+|.+...      ..+.+.+|+++|.++ +||||+++++++...+..++||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI-RHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCccceeeEEEcCCeEEEEE
Confidence            48889999999999999974 567899999998752      334688999999888 8999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||++ |+|.+++...      ..++......+   ++.++.+||+.+++||||+    ++..++
T Consensus        81 e~~~~~~L~~~~~~~------~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~  138 (290)
T cd05580          81 EYVPGGELFSHLRKS------GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDG  138 (290)
T ss_pred             ecCCCCCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCC
Confidence            9998 7999999754      23444444443   3389999999999888887    555554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.52  E-value=1.8e-13  Score=140.19  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |+..+.||+|++|.||++. ..+|+.||||+++..    ..+.+.+|++++.++ +||||+++++++...+..+|||||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKEL-KHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             ceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhh-cCCCEeeeeeeEeeCCcEEEEEecC
Confidence            7888999999999999975 567899999998753    234677899999887 9999999999999999999999999


Q ss_pred             CccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 TCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|+|.+++....   ....+++..+..++.   .++.|||..+++|||+|
T Consensus        81 ~~~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~  127 (284)
T cd07836          81 DKDLKKYMDTHG---VRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLK  127 (284)
T ss_pred             CccHHHHHHhcC---CCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            999999987643   223456666555544   89999999999888887

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.52  E-value=1.2e-13  Score=140.32  Aligned_cols=117  Identities=23%  Similarity=0.156  Sum_probs=94.1

Q ss_pred             eEEEeeeEeecCceEEEEEEee----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNY----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .|.+.+.||+|+||.||++...    +...||||.++..    ....+.+|+..+.++ +||||+++++++...+..+++
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           5 YVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQF-DHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhC-CCCCcceEeEEEecCCceEEE
Confidence            4888999999999999997532    3457999998753    234688899998877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....     ..++...+.+++.   .++.|||+.+++|||+|
T Consensus        84 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~  133 (266)
T cd05033          84 TEYMENGSLDKFLREND-----GKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLA  133 (266)
T ss_pred             EEcCCCCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99999 69999998642     2445555544443   89999999999887766

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.52  E-value=6.8e-14  Score=142.43  Aligned_cols=116  Identities=22%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             eeEeecCceEEEEEEe---eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEGN---YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||.||++..   .++..+|+|.++...    ...+.+|+.++.++ +||||+++++++......++||||++ 
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSL-QHSNLLQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhC-CCCCEeeEEEEEcCCCCcEEEEECCCC
Confidence            3689999999999743   344679999887532    23688899988888 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++..+.. .........+.   ..+..++.|||+.+++|||+|
T Consensus        80 g~L~~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlk  127 (269)
T cd05087          80 GDLKGYLRSCRKA-ELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLA  127 (269)
T ss_pred             CcHHHHHHHhhhc-ccccccHHHHHHHHHHHHHHHHHHHHCCEeccccC
Confidence            7999999864311 11122333322   333489999999999888877

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.51  E-value=6.8e-14  Score=149.36  Aligned_cols=119  Identities=22%  Similarity=0.164  Sum_probs=91.5

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC------
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ------  539 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~------  539 (613)
                      .+.|...+.||+|+||.||++. ..+++.||||++...     ....+.+|+.++..+ +||||+++++++...      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-NHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhc-CCCCccccceeeccccccccc
Confidence            3559999999999999999974 667899999998752     234678899888777 999999999987643      


Q ss_pred             CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ...|+||||++++|.+++...     ........+...++.||.|||+.+|+|||||
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~-----~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk  153 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQME-----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  153 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHhhCCeecCCCC
Confidence            357999999999998887532     1111122333444489999999999888877

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.51  E-value=5.3e-14  Score=149.05  Aligned_cols=88  Identities=24%  Similarity=0.359  Sum_probs=73.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-DF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~  541 (613)
                      ++|.+.+.||+|+||.||+|.      ..+++.||||+++..    ..+.+.+|+.+|.++.+||||+++++++... ..
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            348899999999999999974      356789999999752    2346789999998887889999999988754 46


Q ss_pred             EEEEecCCC-ccHHHHHHHh
Q 007199          542 VYLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~  560 (613)
                      .+++||||+ |+|.++++..
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~  106 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSK  106 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhc
Confidence            899999999 7999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.51  E-value=5.4e-15  Score=144.24  Aligned_cols=120  Identities=19%  Similarity=0.129  Sum_probs=97.8

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      .|...++||.|..++|.+| ...+|..+|+|+|...           -.+.-.+|+.+|.++..||+|+++.++|+.+.+
T Consensus        18 ~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF   97 (411)
T KOG0599|consen   18 KYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAF   97 (411)
T ss_pred             hcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcch
Confidence            3677789999999999986 6889999999999751           123567899999999999999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|+|+|+ |.|+|+|...-   ..+......+++.+.+++.|||..+|+|||+|
T Consensus        98 ~FlVFdl~prGELFDyLts~V---tlSEK~tR~iMrqlfegVeylHa~~IVHRDLK  150 (411)
T KOG0599|consen   98 VFLVFDLMPRGELFDYLTSKV---TLSEKETRRIMRQLFEGVEYLHARNIVHRDLK  150 (411)
T ss_pred             hhhhhhhcccchHHHHhhhhe---eecHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            999999999 99999998532   12222234455555699999999999888776

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.51  E-value=1.1e-13  Score=139.69  Aligned_cols=122  Identities=22%  Similarity=0.228  Sum_probs=98.1

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      |.+.+.||+|+||.||++...++..+|+|.+.+.  ..+.+.+|++++.++ +||||+++++++...+..++||||++ +
T Consensus         6 ~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05059           6 LTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKL-SHPNLVQLYGVCTKQRPIFIVTEYMANG   84 (256)
T ss_pred             cchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEEEcCCCceEEEEecCCCC
Confidence            7788999999999999986556778999998753  345788999999887 99999999999999999999999999 5


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|.++++...     ..++......+   ++.++.+||+.+++|||+|    +++.++
T Consensus        85 ~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~  137 (256)
T cd05059          85 CLLNYLRERK-----GKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDN  137 (256)
T ss_pred             CHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCC
Confidence            9999998642     23444444333   3389999999999888887    554444

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.51  E-value=1.6e-13  Score=152.63  Aligned_cols=121  Identities=18%  Similarity=0.167  Sum_probs=94.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD------  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------  540 (613)
                      +.|.+.+.||+|+||+||++. ..+|+.||||++...     ....+.+|+..|..+ +|+||++++..+...+      
T Consensus        32 ~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~-~h~~iv~~~~~~~~~~~~~~~~  110 (496)
T PTZ00283         32 KKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNC-DFFSIVKCHEDFAKKDPRNPEN  110 (496)
T ss_pred             CCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcC-CCCcEEEeecceecccccCccc
Confidence            459999999999999999974 678999999998753     223678899888777 9999999998776433      


Q ss_pred             --EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 --FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 --~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        .+++||||++ |+|.++|+....  ....+++..+..++.   .||+|||+.+|+|||||
T Consensus       111 ~~~i~lV~Ey~~~gsL~~~l~~~~~--~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLK  170 (496)
T PTZ00283        111 VLMIALVLDYANAGDLRQEIKSRAK--TNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIK  170 (496)
T ss_pred             ceEEEEEEeCCCCCcHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence              4789999999 799999976431  233455555544443   89999999999887766

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.51  E-value=5.8e-14  Score=142.54  Aligned_cols=116  Identities=22%  Similarity=0.247  Sum_probs=95.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .|.+.+.||+|+||.||++. ..+++.||+|.++...   ...+.+|+.++..+ +||||+++++.+...+..|++|||+
T Consensus        10 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l-~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645          10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDC-KHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhC-CCCCeeeEEEEEEeCCEEEEEEecc
Confidence            47788899999999999974 5678999999987642   23577899888777 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.++++...      .+++..+..++   +.++.|||..+++|||||
T Consensus        89 ~~~~L~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  133 (267)
T cd06645          89 GGGSLQDIYHVTG------PLSESQIAYVSRETLQGLYYLHSKGKMHRDIK  133 (267)
T ss_pred             CCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9 69999987532      34555554443   389999999999888877

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=1.3e-13  Score=145.04  Aligned_cols=116  Identities=21%  Similarity=0.103  Sum_probs=89.9

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcC--CCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASD--QHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~--~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ||+|+||+||++. ..+++.||||++.+..      ...+..|..++....  +||||++++.++...+..|+||||++ 
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            6999999999974 6779999999997521      123455666666554  79999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.+++....      .+++..+..+   ++.|+.|||+.+|+|||||    |+..++
T Consensus        81 g~L~~~l~~~~------~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~  133 (330)
T cd05586          81 GELFWHLQKEG------RFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATG  133 (330)
T ss_pred             ChHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC
Confidence            69999987532      3445554443   3389999999999988887    555544

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.51  E-value=3e-13  Score=139.28  Aligned_cols=118  Identities=16%  Similarity=0.074  Sum_probs=93.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|...+.||+|+||.||++. ..+|+.||+|++....    ...+.+|++++..+ +|+||+++++++...+..|+|||
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGL-KHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhc-CCCCEeEEEEEEecCCeEEEEEe
Confidence            458999999999999999974 6778999999987532    23677899888887 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+.++|.+++....     ..+...++..+   +..+|.|||..+++|||||
T Consensus        84 ~~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk  130 (291)
T cd07870          84 YMHTDLAQYMIQHP-----GGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLK  130 (291)
T ss_pred             cccCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99988888876432     22333333333   3389999999998877776

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.51  E-value=2.3e-13  Score=137.50  Aligned_cols=119  Identities=21%  Similarity=0.197  Sum_probs=97.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...+++.+|||.+...  ..+.+.+|+.++.++ +|+||+++++++......+++|||++
T Consensus         6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKL-RHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhC-CCCCEeeeeeeeecCCceEEEEeccC
Confidence            458999999999999999987667788999999863  345789999999887 99999999999999899999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ...++......++   +.++.|||+.+++|+|||
T Consensus        85 ~~~L~~~i~~~~----~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~  130 (261)
T cd05034          85 KGSLLDFLKSGE----GKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLA  130 (261)
T ss_pred             CCCHHHHHhccc----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcc
Confidence             69999997642    2234444444433   389999999998877666

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.51  E-value=1.7e-13  Score=138.93  Aligned_cols=117  Identities=21%  Similarity=0.180  Sum_probs=95.6

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      |.+.+.||+|+||.||++. ..+++.||+|++....  .+++.+|++.+.++ +||||+++++++...+..+++|||++ 
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~   86 (263)
T cd05052           8 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFMTY   86 (263)
T ss_pred             eEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhC-CCCChhheEEEEcCCCCcEEEEEeCCC
Confidence            7888999999999999974 5678899999988643  34788999999887 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++....    ...++....   ...++.++.|||+.+++|||||
T Consensus        87 ~~L~~~~~~~~----~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk  131 (263)
T cd05052          87 GNLLDYLRECN----RQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA  131 (263)
T ss_pred             CcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccC
Confidence            69999997642    223444333   3344489999999999887776

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.51  E-value=1.9e-13  Score=140.14  Aligned_cols=123  Identities=24%  Similarity=0.218  Sum_probs=95.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~  543 (613)
                      .|++.+.||+|+||.||++.     ..+++.||+|++....   .+.+.+|++++.++ +||||+++++++...  ..++
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSL-QHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC-CCCCeeEEEEEEccCCCCceE
Confidence            48889999999999999974     3467899999987643   34788999999887 999999999987643  4789


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +||||++ |+|.+++...+     ..++......+   ++.++.|||..+++|||||    ++..++
T Consensus        84 lv~e~~~~~~L~~~l~~~~-----~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~  145 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHR-----ERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESEN  145 (284)
T ss_pred             EEEEecCCCCHHHHHHhcC-----cCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCC
Confidence            9999999 69999997532     22333333333   3389999999999888877    555444

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=99.50  E-value=2e-13  Score=156.31  Aligned_cols=169  Identities=12%  Similarity=0.056  Sum_probs=112.9

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCcee-------------eccccccCCCCCeEEEecC---------C
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIY-------------SSYQASFNSNASEFYLDVD---------E  101 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~-------------s~~~~~~~~~~~~~~i~~~---------~  101 (613)
                      +++.++.||++|.||+|||||+.||+++|+|..++.+-             ....++.-.+ +.+|++++         -
T Consensus       256 p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~  334 (764)
T TIGR03074       256 PADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEP  334 (764)
T ss_pred             ccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCC
Confidence            44678899999999999999999999999998765441             1111121111 23455432         2


Q ss_pred             CCeEEEEecCCCceeeecccHHHHhhhCc------------------eee-cCCcEEEEe------------------ec
Q 007199          102 DWELYFHSKRFGKMKKLSSSAEEYIRRMP------------------YIS-KDGGVTLGA------------------MK  144 (613)
Q Consensus       102 DG~lY~~~~~~G~l~~~~~~~~~~v~~sP------------------~~~-~dg~v~~Gs------------------~~  144 (613)
                      +|.|+++|.+||++ .|.+.+.......|                  .+. +.|.||+|.                  ..
T Consensus       335 ~G~I~A~Da~TGkl-~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~  413 (764)
T TIGR03074       335 SGVIRAFDVNTGAL-VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYS  413 (764)
T ss_pred             CcEEEEEECCCCcE-eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccccc
Confidence            79999999999999 99998653222211                  111 235677743                  35


Q ss_pred             ceEEEEECCCCcEEEEEecCCC------CCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeC
Q 007199          145 TSVFLVDVKSGRVVDNYVLDFS------ASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQ  218 (613)
Q Consensus       145 ~~~~~vD~~tG~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~  218 (613)
                      ++++|||++||+++|.|.+-..      ..++|.                +++-...+. ..-..||.+..++.++++|+
T Consensus       414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~----------------L~d~~~~~G-~~~~~v~~~~K~G~~~vlDr  476 (764)
T TIGR03074       414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPS----------------LVDLPDADG-TTVPALVAPTKQGQIYVLDR  476 (764)
T ss_pred             ceEEEEeCCCCceEEEecccCCccccccccCCce----------------EEeeecCCC-cEeeEEEEECCCCEEEEEEC
Confidence            7899999999999999987321      111111                111100000 01238999999999999999


Q ss_pred             CCCceEEEEEece
Q 007199          219 DSGEVLWNVAYAD  231 (613)
Q Consensus       219 ~~G~~~Wn~t~~~  231 (613)
                      +||+++|.+.+.-
T Consensus       477 ~tG~~l~~~~e~~  489 (764)
T TIGR03074       477 RTGEPIVPVEEVP  489 (764)
T ss_pred             CCCCEEeeceeec
Confidence            9999999987764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.50  E-value=2.4e-13  Score=139.61  Aligned_cols=124  Identities=23%  Similarity=0.175  Sum_probs=94.9

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhc--CCCCcceeEEEEEEe-----CCE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIAS--DQHPNIVRWYGVESD-----QDF  541 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~~-----~~~  541 (613)
                      |...+.||+|+||+||++. ..+++.||+|.++..     ....+.+|++++..+  .+||||+++++++..     ...
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            7888999999999999984 678999999998752     123566777777654  379999999998865     246


Q ss_pred             EEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          542 VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       542 ~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .+++|||++++|.+++....    ...+++..+..++.   .|+.|||+.+++|||||    ++..++
T Consensus        82 ~~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~  145 (288)
T cd07863          82 VTLVFEHVDQDLRTYLDKVP----PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGG  145 (288)
T ss_pred             EEEEEcccccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC
Confidence            89999999999999987542    23355666555444   89999999999888877    444444

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.50  E-value=1.9e-13  Score=158.75  Aligned_cols=134  Identities=15%  Similarity=0.121  Sum_probs=98.4

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~L  544 (613)
                      ..|.+.+.||+|+||+||++ ...++..||+|.+...     ....+..|+.+|.++ +|||||+++++|...  +.+||
T Consensus        13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L-~HPNIVrl~d~f~de~~~~lyI   91 (1021)
T PTZ00266         13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMREL-KHKNIVRYIDRFLNKANQKLYI   91 (1021)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHc-CCCCcCeEEEEEEecCCCEEEE
Confidence            45999999999999999997 4677889999998742     234788999999888 999999999988654  57999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      |||||+ |+|.++|.....  ....+++..+..++.   .||.|||..+.-+.+-.++|+|++|+||||
T Consensus        92 VMEY~~gGSL~~lL~k~~~--~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL  158 (1021)
T PTZ00266         92 LMEFCDAGDLSRNIQKCYK--MFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFL  158 (1021)
T ss_pred             EEeCCCCCcHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEe
Confidence            999999 699999986421  223456655555443   899999985421111123445555555555

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.50  E-value=1e-13  Score=147.33  Aligned_cols=123  Identities=24%  Similarity=0.207  Sum_probs=94.7

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      +.+.|...+.||+|+||.||++. ..+++.||||++...     ....+.+|+.++..+ +||||+++++++....    
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-NHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHh-CCCchhceeeeeeccccccc
Confidence            33569999999999999999974 567899999998752     234677899888777 9999999999886543    


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                        ..|+||||++++|.+.+...        ++...   +...++.||.|||+.+++|||||    |+..++
T Consensus        94 ~~~~~lv~e~~~~~l~~~~~~~--------l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~  156 (355)
T cd07874          94 FQDVYLVMELMDANLCQVIQME--------LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC  156 (355)
T ss_pred             cceeEEEhhhhcccHHHHHhhc--------CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCC
Confidence              57999999999888877532        23333   33344489999999999888877    554444

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.50  E-value=3.6e-13  Score=135.71  Aligned_cols=117  Identities=19%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |++.+.||+|+||.||++. ..+++.+|+|.++..    ..+.+.+|+.++..+ +|+||+++++++...+..|++|||+
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKM-KHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhC-CCCCcceEEEEEEECCEEEEEEeeC
Confidence            7788999999999999974 668899999988642    334778899888777 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++....    ...+++..+.+++.   .++.+||..+++|+|||
T Consensus        81 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~  127 (255)
T cd08219          81 DGGDLMQKIKLQR----GKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIK  127 (255)
T ss_pred             CCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            9 69999987532    22345555544443   89999999999887766

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.50  E-value=5.7e-14  Score=148.58  Aligned_cols=118  Identities=19%  Similarity=0.187  Sum_probs=93.5

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-----  539 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----  539 (613)
                      +.+.|...+.||+|+||.||++. ..+++.||||++...     ..+.+.+|+++|.++ +||||+++++++...     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHM-KHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhc-CCCchhhhhhhhcccccccc
Confidence            34568999999999999999974 678889999998753     234677899999888 999999999987643     


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       ...|+++|++.++|.++++..       .+++..+..++   +.||.|||+.+|+|||||
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdik  145 (343)
T cd07878          92 FNEVYLVTNLMGADLNNIVKCQ-------KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLK  145 (343)
T ss_pred             cCcEEEEeecCCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeecccCC
Confidence             357999999988999888632       24444444443   389999999999888877

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.50  E-value=8.1e-14  Score=160.20  Aligned_cols=123  Identities=24%  Similarity=0.157  Sum_probs=97.2

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--eCCc----EEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--YEGR----SVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--~~g~----~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +..++...||+|+||.||.|..  ..|.    .||||.+++    +...+|.+|..+|.++ +|||||+++|.|.+....
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f-~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKF-DHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcC-CCcceeeEEEeecCCCCc
Confidence            4478899999999999999742  2232    499999987    3445899999888777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCC-CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGS-FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~-~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|++|||+ |||..||+..+.. .....+.......+.+   .|++||++++.|||||-
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLA  829 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLA  829 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchh
Confidence            99999999 7999999986421 1233344433333333   89999999999999886

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.50  E-value=1.6e-13  Score=139.51  Aligned_cols=121  Identities=23%  Similarity=0.220  Sum_probs=90.5

Q ss_pred             eEeecCceEEEEEEeeC---CcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          480 EIAKGSNGTVVLEGNYE---GRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~~~---g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      +||+|+||+||++....   ...+|+|.+....    ...+.+|++.+..+ +||||+++++++...+..++||||++ |
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l-~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYREL-NHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhC-CCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            68999999999975433   3468899876432    23678899888776 99999999999999999999999999 6


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|.+++...+.. ...........+   .++.|+.|||+.+++|||||    |++.++
T Consensus        81 ~L~~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~  137 (269)
T cd05042          81 DLKNYLRSNRGM-VAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADL  137 (269)
T ss_pred             cHHHHHHhcccc-ccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCC
Confidence            999999875321 111223333333   33489999999999888887    555544

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.50  E-value=2.3e-13  Score=139.47  Aligned_cols=111  Identities=22%  Similarity=0.181  Sum_probs=87.5

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||.||++. ..+|+.+|+|++...      ....+..|++++.++ +||||+++++++....+.++||||++ |+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l-~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKV-NSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhc-CCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            6999999999974 677999999998742      123456799889888 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++....    ...+....+..   .++.++.|||+.+++|||||
T Consensus        80 L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dik  122 (277)
T cd05607          80 LKYHIYNVG----ERGLEMERVIHYSAQITCGILHLHSMDIVYRDMK  122 (277)
T ss_pred             HHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCC
Confidence            998886532    22234444333   34489999999999887776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.50  E-value=2.2e-13  Score=142.07  Aligned_cols=118  Identities=19%  Similarity=0.174  Sum_probs=89.5

Q ss_pred             eeeEeecCceEEEEEEe---eCCcEEEEEEeeccc-hHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEEEEEecCCCc
Q 007199          478 NKEIAKGSNGTVVLEGN---YEGRSVAVKRLVKTH-HDVALKEIQNLIASDQHPNIVRWYGVESD--QDFVYLSLERCTC  551 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~~-~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~~LV~E~~~G  551 (613)
                      ...||+|+||+||++..   .++..||+|.+.... ...+.+|+++|.++ +||||+++++++..  ....++||||+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLREL-KHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhC-CCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            46899999999999853   355789999998643 34688999999887 99999999999864  4578999999999


Q ss_pred             cHHHHHHHhcCCC---ccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSF---EEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~---~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++.......   ....+++..+..+   ++.||.|||+.+++|||||
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlk  135 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLK  135 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCC
Confidence            9999887532110   1123444444333   3489999999999887777

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.50  E-value=1.5e-13  Score=146.39  Aligned_cols=114  Identities=18%  Similarity=0.109  Sum_probs=92.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCcc
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCS  552 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~Gs  552 (613)
                      .|.+.+.||+|+||.||++. ..+++.||+|.....   ....|+.++.++ +||||+++++++...+..++||||+.|+
T Consensus        67 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~---~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~  142 (357)
T PHA03209         67 GYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG---TTLIEAMLLQNV-NHPSVIRMKDTLVSGAITCMVLPHYSSD  142 (357)
T ss_pred             CcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc---ccHHHHHHHHhC-CCCCCcChhheEEeCCeeEEEEEccCCc
Confidence            48999999999999999974 556789999976542   345688888777 9999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++....     ..+++..+.+++   +.||.|||..+|+|||||
T Consensus       143 l~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  184 (357)
T PHA03209        143 LYTYLTKRS-----RPLPIDQALIIEKQILEGLRYLHAQRIIHRDVK  184 (357)
T ss_pred             HHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            999987532     234555444443   389999999999887776

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.50  E-value=2.1e-13  Score=138.66  Aligned_cols=117  Identities=21%  Similarity=0.176  Sum_probs=92.0

Q ss_pred             EEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          476 VFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .....||+|+||.||++. ..+++.||+|.+....   .+.+.+|++++.++ +|+||+++++++...+..++++||++ 
T Consensus        11 ~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~   89 (268)
T cd06624          11 GERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYL-KHRNIVQYLGSDSENGFFKIFMEQVPG   89 (268)
T ss_pred             CceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhc-CCCCeeeeeeeeccCCEEEEEEecCCC
Confidence            344589999999999985 5678899999987643   34788999988777 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|.++++....   ........+.   ..+..++.|||+.+++|||+|
T Consensus        90 ~~L~~~l~~~~~---~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~  135 (268)
T cd06624          90 GSLSALLRSKWG---PLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIK  135 (268)
T ss_pred             CCHHHHHHHhcc---cCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCC
Confidence            699999986421   1111333333   334489999999999888877

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.49  E-value=1.1e-13  Score=143.16  Aligned_cols=122  Identities=21%  Similarity=0.168  Sum_probs=92.7

Q ss_pred             eEEEeeeEeecCceEEEEEEee-------------CC--cEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNY-------------EG--RSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYG  534 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~-------------~g--~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g  534 (613)
                      .|.+.+.||+|+||.||++...             ++  ..||+|.++..    ..+.+.+|+++|.++ +||||+++++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l-~h~~i~~~~~   84 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRL-KNPNIIRLLG   84 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhC-CCCCcCeEEE
Confidence            4888999999999999986421             12  35899998753    234688999999888 9999999999


Q ss_pred             EEEeCCEEEEEecCCC-ccHHHHHHHhcCCC------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          535 VESDQDFVYLSLERCT-CSLNDLIYVLSGSF------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       535 ~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++...+..++|||||+ |+|.+++.......      ....+...+..+++.   .++.|||+.+++|||||
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlk  156 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLA  156 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccC
Confidence            9999999999999999 69999997532100      011234444444433   89999999998887777

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.49  E-value=2.2e-13  Score=138.29  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      ..|.+.+.||+|+||.||++...+...||+|+++..  ..+.+.+|++++.++ +||||+++++++. .+..++||||++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~~~~-~~~~~lv~e~~~   83 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVS-EEPIYIVTEYMS   83 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhC-CCCCcceEEEEEC-CCCcEEEEEcCC
Confidence            348999999999999999986555567999999863  345789999999887 9999999999875 456899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++++...    ...++......++.   .+|.++|+.+++|||||
T Consensus        84 ~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~  129 (262)
T cd05071          84 KGSLLDFLKGEM----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR  129 (262)
T ss_pred             CCcHHHHHhhcc----ccCCCHHHHHHHHHHHHHHHHHHHHCCccccccC
Confidence             69999998532    22344444444443   89999999999887765

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.49  E-value=1.6e-13  Score=148.59  Aligned_cols=88  Identities=25%  Similarity=0.310  Sum_probs=74.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      ..++.||||+++...    .+.+.+|+++|.++..||||++++++|...+..
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~  116 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPI  116 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCc
Confidence            4488889999999999999742      344689999998532    236889999998884499999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHh
Q 007199          543 YLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~  560 (613)
                      ++|||||+ |+|.++|+..
T Consensus       117 ~iv~E~~~~g~L~~~l~~~  135 (401)
T cd05107         117 YIITEYCRYGDLVDYLHRN  135 (401)
T ss_pred             EEEEeccCCCcHHHHHHhc
Confidence            99999999 7999999865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.49  E-value=4.2e-13  Score=135.87  Aligned_cols=120  Identities=21%  Similarity=0.240  Sum_probs=97.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||.||++. ..+|+.||+|.++.      ...+.+.+|++++.++ +|+||+++++++...+..+++|
T Consensus         3 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~-~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           3 NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQL-DHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             ceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhC-CCCCeeeeeeeeecCCeEEEEE
Confidence            48899999999999999985 45899999998864      1245788999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.+++.....  ....++...+.+++.   .++.+||+.+++|||||
T Consensus        82 e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~  133 (267)
T cd08224          82 ELADAGDLSRMIKHFKK--QKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIK  133 (267)
T ss_pred             ecCCCCCHHHHHHHhcc--cCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcC
Confidence            9999 699999976421  223345555554443   89999999999888776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.49  E-value=4e-13  Score=135.41  Aligned_cols=118  Identities=25%  Similarity=0.203  Sum_probs=96.7

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +|+..++||+|+||.||.+ ...+++.+++|.+...     ..+.+.+|++++.++ +|+||+++++++...+..+++||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLL-QHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhC-CCCCeeEEEeEEecCCeEEEEEE
Confidence            3788999999999999986 4678899999987752     234788999999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++....    ...++...+..++.   .++.|||+.+++|+|+|
T Consensus        80 ~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~  128 (256)
T cd08221          80 YANGGTLYDKIVRQK----GQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIK  128 (256)
T ss_pred             ecCCCcHHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence            999 69999998642    23345555554443   89999999999888776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.49  E-value=4.1e-13  Score=137.75  Aligned_cols=124  Identities=24%  Similarity=0.259  Sum_probs=95.9

Q ss_pred             cCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEE-----eCCEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVES-----DQDFV  542 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~-----~~~~~  542 (613)
                      ..+.|++.+.||+|+||.||++ ...+++.+|+|.+...  ..+.+.+|+.++.++.+||||+++++++.     ..+..
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~   95 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQL   95 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeE
Confidence            3456899999999999999997 4567889999988752  23568889988888757999999999885     34578


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ |+|.++++....  ....+++..+..++   ..++.|||+.+++|||+|
T Consensus        96 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  151 (286)
T cd06638          96 WLVLELCNGGSVTDLVKGFLK--RGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVK  151 (286)
T ss_pred             EEEEeecCCCCHHHHHHHhhc--cCccccHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence            99999999 699998875321  22344544444443   389999999999888877

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.49  E-value=1.9e-13  Score=140.43  Aligned_cols=117  Identities=23%  Similarity=0.194  Sum_probs=93.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFV  542 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~  542 (613)
                      .|+..+.||+|+||.||++.     ..++..||+|.++..    ..+.+.+|++++.++ +||||+++++++...  ...
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL-YHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhC-CCCCeeeeeeEEecCCCCce
Confidence            47888999999999999874     456788999998753    234788999999887 999999999998875  578


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ |+|.+++....     ..++......++.   .++.|||+.+++|||||
T Consensus        84 ~lv~e~~~g~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlk  136 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRNK-----NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLA  136 (284)
T ss_pred             EEEEEccCCCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccc
Confidence            99999999 69999997532     2344444444433   89999999999888777

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.49  E-value=2.3e-13  Score=136.63  Aligned_cols=112  Identities=21%  Similarity=0.164  Sum_probs=90.7

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccH
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSL  553 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL  553 (613)
                      ++||+|+||.||++...+++.+|+|.+....    ...+.+|++++.++ +||||+++++++...+..++||||++ |+|
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQY-DHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhC-CCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            3689999999999877788899999987532    23688999998887 99999999999999999999999999 699


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          554 NDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       554 ~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++....     ..+.......++.   .++.++|..+++|||+|
T Consensus        80 ~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~  120 (250)
T cd05085          80 LSFLRKKK-----DELKTKQLVKFALDAAAGMAYLESKNCIHRDLA  120 (250)
T ss_pred             HHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccC
Confidence            99987532     2334444444433   79999999998887776

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.49  E-value=6.8e-15  Score=166.54  Aligned_cols=124  Identities=19%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||.|... ++.+++.+|+|++.+      .....|..|-.+|... +.+.|++++-.|.+.+++|+|
T Consensus        75 ~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~-ns~Wiv~LhyAFQD~~~LYlV  153 (1317)
T KOG0612|consen   75 EDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFG-NSEWIVQLHYAFQDERYLYLV  153 (1317)
T ss_pred             HhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcC-CcHHHHHHHHHhcCccceEEE
Confidence            45899999999999999996 578899999999886      2334677777777555 889999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      ||||+ |||..+|...      ..++++|+..+..   .|+.-||+.+.||||||    |++.+||
T Consensus       154 MdY~pGGDlltLlSk~------~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GH  213 (1317)
T KOG0612|consen  154 MDYMPGGDLLTLLSKF------DRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGH  213 (1317)
T ss_pred             EecccCchHHHHHhhc------CCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCc
Confidence            99999 6999999853      2789999998887   89999999999998887    6666654

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.49  E-value=9e-14  Score=140.54  Aligned_cols=118  Identities=19%  Similarity=0.127  Sum_probs=97.3

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      .|.+.+.||+|+||.||++...+++.+|+|.+....   .+.+.+|++++..+ +||||+++++++...+..++||||++
T Consensus         7 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (261)
T cd05148           7 EFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRL-RHKHLISLFAVCSVGEPVYIITELME   85 (261)
T ss_pred             HHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcC-CCcchhheeeeEecCCCeEEEEeecc
Confidence            378889999999999999876668999999998643   45788999998777 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++++...    ...+......+++.   .++.|||..+++|||+|
T Consensus        86 ~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~  131 (261)
T cd05148          86 KGSLLAFLRSPE----GQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLA  131 (261)
T ss_pred             cCCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccC
Confidence             69999998642    22344444444443   89999999998887776

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.49  E-value=3e-13  Score=136.45  Aligned_cols=117  Identities=26%  Similarity=0.277  Sum_probs=96.3

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc--hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .|++.+.||+|+||.||++. ..|+.||+|.++...  .+.+.+|+.++.++ +|+||+++++++...+..++||||++ 
T Consensus         7 ~~~~~~~ig~g~~g~v~~~~-~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~~~~   84 (256)
T cd05039           7 ELKLGATIGKGEFGDVMLGD-YRGQKVAVKCLKDDSTAAQAFLAEASVMTTL-RHPNLVQLLGVVLQGNPLYIVTEYMAK   84 (256)
T ss_pred             hccceeeeecCCCceEEEEE-ecCcEEEEEEeccchhHHHHHHHHHHHHHhc-CCcceeeeEEEEcCCCCeEEEEEecCC
Confidence            47889999999999999964 458999999998743  45788999999888 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++...    ...+.+.....++.   .++.|||..+++|||||
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~  129 (256)
T cd05039          85 GSLVDYLRSRG----RAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLA  129 (256)
T ss_pred             CcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcc
Confidence            69999998642    22345555544444   89999999999887776

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=3e-13  Score=136.77  Aligned_cols=116  Identities=25%  Similarity=0.208  Sum_probs=94.8

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .|...+.||+|+||.||++. ..+++.+|+|.+...        ..+.+.+|++++.++ +||||+++++++...+..++
T Consensus         3 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL-QHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             cccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhC-CCCCeeeeEEEEccCCeEEE
Confidence            47889999999999999974 567899999988742        223678899988887 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||++ ++|.+++....      .++..+..+   .++.++.+||..+++|||||
T Consensus        82 v~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~  131 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG------ALTETVTRKYTRQILEGVEYLHSNMIVHRDIK  131 (263)
T ss_pred             EEEECCCCcHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            999999 59999997542      234444443   34489999999999888877

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.49  E-value=5.9e-14  Score=142.05  Aligned_cols=118  Identities=15%  Similarity=0.050  Sum_probs=90.9

Q ss_pred             eeEeecCceEEEEEEe-eC-------CcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          479 KEIAKGSNGTVVLEGN-YE-------GRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~-~~-------g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.||+|+||.||++.. ..       ...+|+|.+....   .+.+..|+.++..+ +||||+++++++...+..++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQL-SHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhC-CCCChhheeeEEEeCCCcEEEEe
Confidence            3689999999999742 22       3358889887532   34678888888776 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||+ |+|.++++..+     ..++..+...++.   .++.|||+.+++|||||    ++..++
T Consensus        80 ~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~  137 (258)
T cd05078          80 YVKFGSLDTYLKKNK-----NLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREE  137 (258)
T ss_pred             cCCCCcHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEeccc
Confidence            999 69999998642     2445555544443   89999999999888887    554444

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.49  E-value=2.9e-13  Score=137.64  Aligned_cols=125  Identities=23%  Similarity=0.250  Sum_probs=98.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeC------CEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQ------DFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~------~~~~L  544 (613)
                      .|...+.||+|+||.||++. ..+++.||+|++...  ....+.+|+.++.++.+||||+++++++...      ...|+
T Consensus         7 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~i   86 (272)
T cd06637           7 IFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWL   86 (272)
T ss_pred             hhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEE
Confidence            47778899999999999974 567889999998753  3457889998888876899999999998763      46899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|||++ |+|.+++....    ...+++.++..++   +.++.|||..+++|||+|    +++.++
T Consensus        87 v~e~~~~~~L~~~l~~~~----~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~  148 (272)
T cd06637          87 VMEFCGAGSVTDLIKNTK----GNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENA  148 (272)
T ss_pred             EEEcCCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCC
Confidence            999999 69999998642    2345555555544   389999999999888887    555544

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.49  E-value=5.1e-13  Score=138.94  Aligned_cols=126  Identities=21%  Similarity=0.202  Sum_probs=99.5

Q ss_pred             EEEeeeEeecCceEEEEEE-ee--CCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NY--EGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~--~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~  543 (613)
                      |.+.+.||+|+||.||++. ..  +++.||+|.+...      ..+.+.+|++++.++ +||||+++++++...  +..+
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLREL-KHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhc-CCCCccceEEEEeCCCCceEE
Confidence            6788899999999999985 44  6899999999862      234678899888887 999999999999988  7899


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +||||++++|.+++...... ....+++..+.+++   +.++.|||+.+++|||||    ++..++
T Consensus        81 lv~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~  145 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQA-KRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEG  145 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccC-CCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCC
Confidence            99999999888888754321 11245555554444   389999999999998888    665544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=9.6e-15  Score=151.18  Aligned_cols=119  Identities=22%  Similarity=0.161  Sum_probs=101.4

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|...++||+|+||.||+| ...+++.||+|.+..+    ..++.+.|+.+|..+ +++||.++|+.|.....++++|||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~-~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQC-DSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhc-CcchHHhhhhheeecccHHHHHHH
Confidence            3677799999999999998 5788999999999863    344788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |. |++.+.|+...   ........++.+.+..|+.|||..+.+|||||
T Consensus        93 ~~gGsv~~lL~~~~---~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIK  138 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGN---ILDEFEIAVILREVLKGLDYLHSEKKIHRDIK  138 (467)
T ss_pred             hcCcchhhhhccCC---CCccceeeeehHHHHHHhhhhhhcceeccccc
Confidence            99 69999998643   22333445677777799999999999999988

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.48  E-value=2.7e-13  Score=140.89  Aligned_cols=120  Identities=21%  Similarity=0.183  Sum_probs=95.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++.      ..++..||||+++...    .+.+.+|++++.++.+||||+++++++...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            458999999999999999974      2345579999987532    346889999998876899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||++ |+|.++++...    ...+++.....+..   .++.|||+.+++|+|||
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~----~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlk  168 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKR----ESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLA  168 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhc
Confidence            99999999 79999997532    22245555444433   89999999999877666

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.48  E-value=2.5e-13  Score=138.50  Aligned_cols=122  Identities=20%  Similarity=0.159  Sum_probs=95.5

Q ss_pred             eEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .|...+.||+|+||.||++..      .+...+|+|.+....    .+.+.+|++++.++ +|+||+++++++...+..+
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           6 NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL-SHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             hceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhc-CCcceeeeEEEECCCCcce
Confidence            478889999999999999752      234679999887532    35789999999888 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCC---ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSF---EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~---~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++ |+|.++++......   ....++......++.   .++.|||+.+++|||||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlk  144 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLA  144 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCc
Confidence            9999999 79999998643110   011345555554443   89999999999888777

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.48  E-value=3.4e-13  Score=137.12  Aligned_cols=116  Identities=22%  Similarity=0.161  Sum_probs=93.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCC---cEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEG---RSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g---~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      |.+.+.||+|+||.||++. ..++   ..||||.+...    ....+.+|++++.++ +||||+++++++...+..++||
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           6 VKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF-DHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             eEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC-CCcCcceEEEEECCCCceEEEE
Confidence            7889999999999999975 3334   36999998753    234788999988877 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.++++...     ..+.......++   +.++.+||+.+++|||||
T Consensus        85 e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~  133 (269)
T cd05065          85 EFMENGALDSFLRQND-----GQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLA  133 (269)
T ss_pred             ecCCCCcHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC
Confidence            9999 69999997632     234444444433   389999999999888777

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.48  E-value=2.8e-13  Score=140.79  Aligned_cols=123  Identities=20%  Similarity=0.238  Sum_probs=95.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCc--EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGR--SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~--~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||.||++. ..++.  .+|+|.++..    ..+.+.+|++++.++.+||||+++++++...+..|+||
T Consensus         8 ~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~   87 (303)
T cd05088           8 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAI   87 (303)
T ss_pred             hceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEE
Confidence            48889999999999999985 44554  4688877642    23468889999988878999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCC----------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSF----------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~----------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.++++......          ....+++..+..++.   .|+.|||+.+++|||||
T Consensus        88 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlk  151 (303)
T cd05088          88 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA  151 (303)
T ss_pred             EeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            9999 69999998643110          112345555555444   89999999999887776

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.48  E-value=3.5e-14  Score=151.33  Aligned_cols=120  Identities=21%  Similarity=0.171  Sum_probs=99.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +....+||-|.||.||.+. +.....||||.++..  ..++|++|..+|+.+ +|||+|+|+|+|..+..+|||+|||. 
T Consensus       269 ItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKei-kHpNLVqLLGVCT~EpPFYIiTEfM~y  347 (1157)
T KOG4278|consen  269 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTHEPPFYIITEFMCY  347 (1157)
T ss_pred             eeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhh-cCccHHHHhhhhccCCCeEEEEecccC
Confidence            6778899999999999964 566678999999974  456999999999887 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+||+.+.+. .-..+-+-+++-++..+|.||..+++|||||-
T Consensus       348 GNLLdYLRecnr~-ev~avvLlyMAtQIsSaMeYLEkknFIHRDLA  392 (1157)
T KOG4278|consen  348 GNLLDYLRECNRS-EVPAVVLLYMATQISSAMEYLEKKNFIHRDLA  392 (1157)
T ss_pred             ccHHHHHHHhchh-hcchhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            9999999987421 22222233444444489999999999999997

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.48  E-value=2.6e-13  Score=137.27  Aligned_cols=117  Identities=20%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .|++.+.||+|+||.||++...++..+|+|.+...  ..+.+.+|+.++.++ +|+||+++++++. .+..+++|||++ 
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~~~~-~~~~~lv~e~~~~   84 (260)
T cd05070           7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKL-RHDKLVQLYAVVS-EEPIYIVTEYMSK   84 (260)
T ss_pred             HhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhc-CCCceEEEEeEEC-CCCcEEEEEecCC
Confidence            47888999999999999987777888999998853  345789999999887 9999999999875 456899999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++...    ...+++....+++.   .++.|||+.+++|||+|
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~  129 (260)
T cd05070          85 GSLLDFLKDGE----GRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLR  129 (260)
T ss_pred             CcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc
Confidence            69999997632    22345544444443   89999999999887776

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.48  E-value=3.3e-13  Score=139.42  Aligned_cols=116  Identities=22%  Similarity=0.197  Sum_probs=94.3

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |...+.||+|+||.||++. ..+++.||||+++...        ...+..|++++.++ +|+||+++++++...+..++|
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQEL-KHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhc-CCCCChhhhheeecCCEEEEE
Confidence            6778899999999999985 5678999999998632        22567899888777 999999999999999999999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+.|+|.++++...     ..+++..+..++.   .+|.|||..+++|+|||
T Consensus        81 ~e~~~~~L~~~i~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~  129 (298)
T cd07841          81 FEFMETDLEKVIKDKS-----IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLK  129 (298)
T ss_pred             EcccCCCHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC
Confidence            9999779999997531     2345544444433   89999999999887777

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.48  E-value=4.1e-13  Score=135.08  Aligned_cols=117  Identities=20%  Similarity=0.182  Sum_probs=95.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |.+.+.||+|+||.||++. ..+++.||+|.+..     ...+.+.+|++++.++ +||||+++++++...+..++||||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKL-DSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhc-CCCCeehheeeeccCCEEEEEEEe
Confidence            6788999999999999974 56789999999874     2344788999988887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.++++...    ...++...+..++   +.++.|||..+++|+|+|
T Consensus        81 ~~~~~L~~~l~~~~----~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~  128 (256)
T cd08529          81 AENGDLHKLLKMQR----GRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIK  128 (256)
T ss_pred             CCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            99 59999998642    2334444444333   389999999998887776

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.48  E-value=2.4e-13  Score=139.28  Aligned_cols=123  Identities=21%  Similarity=0.203  Sum_probs=100.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|+||.||++. ..+++.||||++...     ..+.+.+|++++.++ +||||+++++++...+..++||||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             ceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhc-CCCCCcchhhhcccCCcEEEEeec
Confidence            7788999999999999984 567899999988752     224688999999888 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +.++|.+++...    ....++...+..++.   .++.|||..+++|||++    ++..++
T Consensus        81 ~~~~l~~~~~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~  137 (284)
T cd07860          81 LHQDLKKFMDAS----PLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG  137 (284)
T ss_pred             cccCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC
Confidence            998999998754    233455655555544   89999999999888887    555555

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.48  E-value=4.6e-13  Score=139.32  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=98.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++..        .+...+|+|.+...    ....+.+|++++.++.+||||+++++++...+
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            4589999999999999998642        12357999999853    22367889988887768999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCC----------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSF----------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~----------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ..|+||||++ |+|.+++...+...          ....++...+.+++.   .++.|||+.+++|||||    ++..++
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~  177 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN  177 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCC
Confidence            9999999999 69999998753110          112344444444433   89999999999888887    554444

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.48  E-value=2.8e-13  Score=137.32  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=95.0

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      |+..+.||+|+||.||++. ..+++.||+|.+....         .+.+.+|++.+.++ +|+||+++++++...+..++
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL-NHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHc-CCCceehhhceeccCCeEEE
Confidence            6677899999999999974 6788999999987522         34788999999887 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||++ ++|.+++....      .+++....   +.++.|+.+||+.+++|||||
T Consensus        81 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~  130 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG------AFKEAVIINYTEQLLRGLSYLHENQIIHRDVK  130 (268)
T ss_pred             EEeccCCCcHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            999999 59999997542      23444443   344499999999999988887

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.48  E-value=4.1e-13  Score=140.17  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=90.3

Q ss_pred             eeeEeecCceEEEEEEe---eCCcEEEEEEeeccc-hHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEEEEEecCCCc
Q 007199          478 NKEIAKGSNGTVVLEGN---YEGRSVAVKRLVKTH-HDVALKEIQNLIASDQHPNIVRWYGVESD--QDFVYLSLERCTC  551 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~~-~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~~LV~E~~~G  551 (613)
                      .+.||+|+||+||++..   .+++.+|+|.+.... ...+.+|+++|.++ +||||+++++++..  ....+++|||+.+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLREL-KHPNVISLQKVFLSHADRKVWLLFDYAEH   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhc-CCCCCcceeeeEecCCCcEEEEEEeccCC
Confidence            46899999999999853   356789999998643 34678999999888 99999999999864  4578999999999


Q ss_pred             cHHHHHHHhcCCC---ccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSF---EEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~---~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++.......   ....+++..+..+   ++.||.|||+.+|+|||||
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlk  135 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLK  135 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCC
Confidence            9999887542110   1123455544443   3489999999999888776

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.48  E-value=6.4e-13  Score=136.06  Aligned_cols=122  Identities=24%  Similarity=0.244  Sum_probs=96.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|+..+.||+|+||.||++. ..+|+.||+|++...     ..+.+.+|++++.++ +||||+++++++...+..++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQL-KHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhC-CCCCEeeeeeEEeeCCEEEEEEe
Confidence            48889999999999999975 557899999988642     224678999999887 99999999999999999999999


Q ss_pred             CCCc-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+++ .|..++..      ...+++.++..++.   .+|.|||..+++|||||    ++..++
T Consensus        81 ~~~~~~l~~~~~~------~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~  137 (286)
T cd07847          81 YCDHTVLNELEKN------PRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQG  137 (286)
T ss_pred             ccCccHHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCC
Confidence            9995 66655542      22345555555444   89999999999888877    554444

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.47  E-value=2.1e-13  Score=139.68  Aligned_cols=116  Identities=23%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|+||.||++. ..+|+.+|+|+++..     ....+.+|++++.++ +||||+++++++.+.+..++++||
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL-KHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhc-CCCCeeeHHHHhccCCceEEEEec
Confidence            7788999999999999974 568999999998752     224678899988877 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|+|.+++....     ..+++..+..++.   .||.|||..+++|||||
T Consensus        81 ~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~  126 (284)
T cd07839          81 CDQDLKKYFDSCN-----GDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLK  126 (284)
T ss_pred             CCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC
Confidence            9999999887532     2355555555444   89999999999888777

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.47  E-value=5e-13  Score=135.49  Aligned_cols=115  Identities=19%  Similarity=0.197  Sum_probs=93.9

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc---------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT---------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~---------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |+..+.||+|+||+||++...+++.+|||.+...         ..+.+.+|+++|.++ +|+||+++++++...+..+++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSL-KHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhc-CCCCEeeEeeEeecCCeEEEE
Confidence            5678899999999999987778999999988742         123578899999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....      .++...+..+   +..++.+||..+++|+|||
T Consensus        81 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  129 (265)
T cd06631          81 MEFVPGGSISSILNRFG------PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIK  129 (265)
T ss_pred             EecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcC
Confidence            99999 59999997532      2344444433   3389999999999887777

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.47  E-value=5.5e-13  Score=135.02  Aligned_cols=117  Identities=19%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .|.+.+.||+|+||.||++....+..+|+|++...  ..+.+.+|++++.++ +|||++++++++. .+..+++|||++ 
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~-~~~~~~v~e~~~~   84 (260)
T cd05069           7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKL-RHDKLVPLYAVVS-EEPIYIVTEFMGK   84 (260)
T ss_pred             HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhC-CCCCeeeEEEEEc-CCCcEEEEEcCCC
Confidence            48889999999999999987666667999988753  335788999999887 9999999998875 456899999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++...    ...++......++   ..++.|||+.+++|||||
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~  129 (260)
T cd05069          85 GSLLDFLKEGD----GKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLR  129 (260)
T ss_pred             CCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccC
Confidence            69999997642    2234444443333   389999999999888877

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.47  E-value=7e-13  Score=133.58  Aligned_cols=116  Identities=23%  Similarity=0.263  Sum_probs=95.3

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      |++.+.||+|+||.||++...+++.+|+|.+...  ..+.+.+|++++.++ +||||+++++++......+++|||++ |
T Consensus         6 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd05112           6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKL-SHPKLVQLYGVCTERSPICLVFEFMEHG   84 (256)
T ss_pred             eEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhC-CCCCeeeEEEEEccCCceEEEEEcCCCC
Confidence            7888999999999999986666889999998863  345789999999887 99999999999999999999999999 6


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++....     ..+....+..++   ..++.+||+.+++|||+|
T Consensus        85 ~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~  127 (256)
T cd05112          85 CLSDYLRAQR-----GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLA  127 (256)
T ss_pred             cHHHHHHhCc-----cCCCHHHHHHHHHHHHHHHHHHHHCCccccccc
Confidence            9999997532     233444444433   389999999999887766

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.47  E-value=5.3e-13  Score=135.14  Aligned_cols=118  Identities=18%  Similarity=0.167  Sum_probs=94.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++....+..+|+|.+...  ..+.+.+|++++.++ +|+||+++++++.. ...+++|||++
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~-~~~~~v~e~~~   83 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTL-QHDKLVKLHAVVTK-EPIYIITEFMA   83 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhc-CCCCcceEEEEEcC-CCeEEEEEeCC
Confidence            458999999999999999987667778999988753  345788999988887 99999999999887 77899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ....+......+   +..++.+||+.+++|||||
T Consensus        84 ~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~  129 (260)
T cd05073          84 KGSLLDFLKSDE----GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLR  129 (260)
T ss_pred             CCcHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHhCCccccccC
Confidence             69999997642    223343333333   3389999999998877776

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.47  E-value=3.9e-13  Score=137.35  Aligned_cols=117  Identities=22%  Similarity=0.195  Sum_probs=93.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV~E  547 (613)
                      |.+.+.||+|+||.||++. ..+++.+|+|+++...    .....+|+..+.++.+|+||+++++++.+.  +..++|||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            4677899999999999974 6678999999987531    124457888888886699999999999988  89999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++|+|.+++....     ..++...+..++.   .+|.|||..+++|||||
T Consensus        81 ~~~~~l~~~l~~~~-----~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~  127 (282)
T cd07831          81 LMDMNLYELIKGRK-----RPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIK  127 (282)
T ss_pred             cCCccHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCceecccC
Confidence            99999999887532     2345555444444   89999999999887776

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.47  E-value=4.6e-13  Score=138.79  Aligned_cols=122  Identities=22%  Similarity=0.234  Sum_probs=98.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|...+.||+|+||.||++. ..+++.||+|.+...   ..+.+.+|+.++..+ +||||+++++++...+..++||||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMREN-KNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCEEEEeecc
Confidence            458999999999999999975 578999999998752   334678899888777 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++ |+|.+++...       .++..++..+   ++.++.|||+.+++|||||    +++.++
T Consensus        98 ~~~~~L~~~~~~~-------~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~  152 (297)
T cd06656          98 LAGGSLTDVVTET-------CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDG  152 (297)
T ss_pred             cCCCCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC
Confidence            99 6999998642       2344444443   3389999999999887777    555444

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.47  E-value=2e-13  Score=139.41  Aligned_cols=121  Identities=24%  Similarity=0.255  Sum_probs=94.8

Q ss_pred             EEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      |.+.+.||+|+||.||++..      .+++.||||.++..    ..+.+.+|+++|.++ +||||+++++++...+..++
T Consensus         7 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~l   85 (280)
T cd05049           7 IVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNF-QHENIVKFYGVCTEGDPPIM   85 (280)
T ss_pred             hhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhc-CCCCchheeeEEecCCCeEE
Confidence            77889999999999999753      33578999998763    235789999999887 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcC--------CCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSG--------SFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~--------~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||++ |+|.++++....        ......++...+..+   ++.++.+||..+++|||||
T Consensus        86 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlk  149 (280)
T cd05049          86 VFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLA  149 (280)
T ss_pred             EEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccc
Confidence            999999 699999986531        011223444444333   3389999999999887776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PTZ00284 protein kinase; Provisional

Probab=99.47  E-value=5e-13  Score=147.67  Aligned_cols=118  Identities=13%  Similarity=0.008  Sum_probs=89.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec--cchHHHHHHHHHHHhc-----CCCCcceeEEEEEEeC-CEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK--THHDVALKEIQNLIAS-----DQHPNIVRWYGVESDQ-DFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l-----~~HpnIV~l~g~~~~~-~~~~  543 (613)
                      ..|.+.++||+|+||+||++. ..+++.||||+++.  .....+..|++++..+     ..|.+++++++++... .++|
T Consensus       129 ~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~  208 (467)
T PTZ00284        129 QRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMC  208 (467)
T ss_pred             CcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEE
Confidence            569999999999999999984 56788999999975  2334566777776655     2345689999988765 4899


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhc-CCceeeccc
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~-~~iiHrDlK  596 (613)
                      ||||++.++|.+++..++      .+....+.   ..++.||.|||. .+|||||||
T Consensus       209 iv~~~~g~~l~~~l~~~~------~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlK  259 (467)
T PTZ00284        209 IVMPKYGPCLLDWIMKHG------PFSHRHLAQIIFQTGVALDYFHTELHLMHTDLK  259 (467)
T ss_pred             EEEeccCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCC
Confidence            999999889999987542      33444433   334489999997 599888887

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.47  E-value=6.4e-13  Score=134.85  Aligned_cols=116  Identities=24%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFV  542 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~  542 (613)
                      .|...+.||+|+||.||++. ..+++.||+|.+...        ..+.+.+|++++.++ +||||+++++++.+.  ..+
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNL-LHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhc-CCCCeeeEEeEeccCCCceE
Confidence            48889999999999999974 577899999988631        123678899999888 999999999998764  468


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||++ |+|.+++....      .+...+..+++   ..+|.+||+.+++|+|||
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~  133 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG------ALTENVTRKYTRQILEGVSYLHSNMIVHRDIK  133 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence            89999999 69999997532      23444444443   389999999999888777

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.47  E-value=4.5e-13  Score=137.00  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=93.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      ++|++.+.||+|+||.||++..      .+++.||+|.+...    ...++.+|+.++..+ +||||+++++++......
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l-~~~~iv~~~~~~~~~~~~   84 (277)
T cd05062           6 EKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF-NCHHVVRLLGVVSQGQPT   84 (277)
T ss_pred             HHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEcCCCCe
Confidence            4589999999999999998632      23567999998652    233688999888777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCc----cccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFE----EQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~----~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ |+|.++++..+....    ........+..   .++.++.|||+.+++|||||
T Consensus        85 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlk  146 (277)
T cd05062          85 LVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLA  146 (277)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcc
Confidence            99999999 699999976432111    11122333333   34489999999998887776

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.47  E-value=6.2e-13  Score=137.74  Aligned_cols=116  Identities=21%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|...+.||+|+||.||++. ..+++.+|+|.+...   ..+.+.+|+.++..+ +||||+++++++...+..|+||||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~-~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN-KNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhC-CCCCEeeEEEEEEeCCEEEEeecc
Confidence            458999999999999999974 678899999998753   334788899888776 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|.++++..       .+.......   .++.++.|||..+++|||||
T Consensus        99 ~~~~~L~~~~~~~-------~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLk  143 (296)
T cd06654          99 LAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLHSNQVIHRDIK  143 (296)
T ss_pred             cCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            99 6999998642       233334333   33489999999999888777

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.47  E-value=2.4e-13  Score=139.13  Aligned_cols=117  Identities=21%  Similarity=0.210  Sum_probs=96.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .|++.+.||+|+||.||++. ..++..+|+|.+....   .+.+.+|++++.++ +||||+++++.+...+..|+||||+
T Consensus         6 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611           6 IWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSEC-KHPNIVGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             HHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhC-CCCceeEEEEEEecCCeEEEEeecc
Confidence            37888899999999999975 4578999999987532   34688999999888 8999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++....     ..+++..+.+++.   .++.|||..+++|||+|
T Consensus        85 ~~~~L~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~  130 (280)
T cd06611          85 DGGALDSIMLELE-----RGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLK  130 (280)
T ss_pred             CCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            9 59999987632     2355555555444   89999999999887776

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.47  E-value=7e-13  Score=137.78  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=94.0

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|+..+.||+|+||.||++ ...+++.||+|.+....      .+.+.+|++++..+ +||||+++++.+...++.++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFA-ENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhC-CCCCeeeeEEEEecCCEEEEEE
Confidence            3788899999999999997 46778899999987532      33677899888777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.+++....      .+++..+..++   +.++.|||+.+++|||+|
T Consensus        81 e~~~g~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  128 (305)
T cd05609          81 EYVEGGDCATLLKNIG------ALPVDMARMYFAETVLALEYLHNYGIVHRDLK  128 (305)
T ss_pred             ecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCc
Confidence            9999 59999997532      34444444333   389999999998777766

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.47  E-value=5.7e-13  Score=137.20  Aligned_cols=123  Identities=18%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      ..+..||+|.+....    ...+.+|+..+.++ +||||+++++++...+..
T Consensus         6 ~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           6 EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF-TCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             HHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEcCCCCc
Confidence            4588999999999999999632      234579999887532    23677899888777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCc----cccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFE----EQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~----~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+||||++ |+|.++++.......    ........+..   .++.++.|||+.+++|||||
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dik  146 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLA  146 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCC
Confidence            99999999 799999986431111    11223333333   33489999999999887776

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=6.1e-13  Score=138.81  Aligned_cols=124  Identities=21%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|+..+.||+|+||.||++. ..+++.+|+|.+...      ..+.+.+|++++..+ +||||+++++.+...+..|+||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATL-DHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhC-CCCCchhheeeeecCCEEEEEE
Confidence            48889999999999999975 456899999998863      223688899988777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||+. |+|.+++...    ....+++.....++   +.++.|||..+++|+|||    ++..++
T Consensus        81 e~~~~~~L~~~~~~~----~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~  140 (316)
T cd05574          81 DYCPGGELFRLLQRQ----PGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESG  140 (316)
T ss_pred             EecCCCCHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCC
Confidence            9999 5999998753    22345555554443   389999999999888877    554443

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.46  E-value=7.6e-13  Score=133.09  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=97.2

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|+||.||++ ...+++.+|+|++...     ....+.+|+++|+++ +||||+++++.+...+..++||||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLL-SHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhC-CCCchhheeeeEecCCEEEEEEec
Confidence            788999999999999997 4568899999998753     234788999999887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++....    ...+++..+..++.   .++.+||+.+++|+|+|
T Consensus        81 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~  128 (256)
T cd08220          81 APGGTLAEYIQKRC----NSLLDEDTILHFFVQILLALHHVHTKLILHRDLK  128 (256)
T ss_pred             CCCCCHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            99 59999998642    23355555554443   89999999999998888

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.46  E-value=3e-13  Score=137.83  Aligned_cols=114  Identities=20%  Similarity=0.162  Sum_probs=85.5

Q ss_pred             eEeecCceEEEEEEeeCCc---EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          480 EIAKGSNGTVVLEGNYEGR---SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~~~g~---~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      +||+|+||.||++...++.   .+++|.+...    ..+.+.+|+..+..+ +||||++++++|......|+|||||+ |
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRIL-QHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhcc-CCcchhheEEEecCCCccEEEEecCCCC
Confidence            6899999999997544433   4667766642    234788999888766 99999999999999999999999999 6


Q ss_pred             cHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.++++....  .....+...+   ...++.||.|||+.+++|||||
T Consensus        81 ~L~~~l~~~~~--~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dik  126 (268)
T cd05086          81 DLKSYLSQEQW--HRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLA  126 (268)
T ss_pred             cHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCc
Confidence            99999986431  1122333333   3334489999999998777666

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.46  E-value=4.1e-13  Score=136.39  Aligned_cols=121  Identities=16%  Similarity=0.066  Sum_probs=91.8

Q ss_pred             EEEeeeEeecCceEEEEEEee----CCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE----
Q 007199          475 VVFNKEIAKGSNGTVVLEGNY----EGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF----  541 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~----~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~----  541 (613)
                      |.+.+.||+|+||.||++...    .+..||+|+++..     ..+.+.+|++.+..+ +||||+++++++...+.    
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDF-DHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhC-CCCCeeeEEeeeccCCccccC
Confidence            356789999999999997532    2467999998753     234788999988877 99999999998876554    


Q ss_pred             --EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 --VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 --~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        .+++|||++ |+|.+++...+.......+++....+++.   .|+.|||+.+++|||+|
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlk  140 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLA  140 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence              799999999 79999997643211223455555555444   89999999998877766

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.46  E-value=4.3e-13  Score=137.44  Aligned_cols=112  Identities=17%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|++.++||+|+||.||++ ...+++.||+|.+...    ....+.+|++++.++ +||||+++++++...+..++||||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKC-DSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhC-CCCCeeeEEEEEEECCEEEEEEec
Confidence            3677889999999999997 4678899999998753    224688999998877 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|..+..          +++..   +...++.++.|||+.+++|+|||
T Consensus        81 ~~~~~l~~~~~----------~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  122 (279)
T cd06619          81 MDGGSLDVYRK----------IPEHVLGRIAVAVVKGLTYLWSLKILHRDVK  122 (279)
T ss_pred             CCCCChHHhhc----------CCHHHHHHHHHHHHHHHHHHHHCCEeeCCCC
Confidence            99 58765431          22333   33444489999999999888776

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.46  E-value=5e-13  Score=138.73  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++..        .++..||+|.+...    ..+.+.+|+.++..+.+||||+++++++....
T Consensus        15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   94 (304)
T cd05101          15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   94 (304)
T ss_pred             HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCC
Confidence            4588999999999999998742        23457999988752    23468899988877658999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCC----------ccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSF----------EEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~----------~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+++|||++ |+|.+++...+...          ....++.....+   .++.++.|||+.+++|||||
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlk  164 (304)
T cd05101          95 PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLA  164 (304)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccc
Confidence            9999999999 69999998753110          112233333333   33389999999999888776

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.2e-13  Score=147.72  Aligned_cols=124  Identities=20%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ..|...+.||-|+||+|.++. ..+...+|+|.+++.+      ...+..|-.||... +.+.||+||-.|.+++.+|+|
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEA-Dn~WVVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEA-DNEWVVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhc-CCcceEEEEEEeccCCceEEE
Confidence            448889999999999999964 6677789999998732      23567788888877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |||++ |++..+|.+      ...++++.+..++.   .|+++.|..++||||||    |+++|||
T Consensus       708 MdYIPGGDmMSLLIr------mgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGH  767 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIR------MGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGH  767 (1034)
T ss_pred             EeccCCccHHHHHHH------hccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCc
Confidence            99999 699999984      34666666666555   89999999999999998    7788875

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=1.2e-12  Score=132.06  Aligned_cols=118  Identities=24%  Similarity=0.287  Sum_probs=96.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|++.+.||+|+||.||++. ..+++.+|+|.+...   ..+.+.+|++++.++ +||||+++++++...+..|++|||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKEC-RHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhC-CCCChhceEEEEEeCCEEEEEEeC
Confidence            348899999999999999975 567889999998863   345788999988887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++....     ..+++..+..++.   .++.|||+.+++|+|+|
T Consensus        82 ~~~~~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~  128 (262)
T cd06613          82 CGGGSLQDIYQVTR-----GPLSELQIAYVCRETLKGLAYLHETGKIHRDIK  128 (262)
T ss_pred             CCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCceecCCC
Confidence            99 59999987642     2344444444433   89999999999887777

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.46  E-value=5e-13  Score=135.83  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=86.5

Q ss_pred             eeEeecCceEEEEEEee-------------CCcEEEEEEeeccch---HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          479 KEIAKGSNGTVVLEGNY-------------EGRSVAVKRLVKTHH---DVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~-------------~g~~VAVK~l~~~~~---~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.||+|+||.||++...             ....||+|.+.....   ..+..|+.++..+ +||||+++++++......
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l-~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQV-SHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCCC
Confidence            36899999999997421             123589998875333   3677888888777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||++ |+|..+++..     ...+.+.+..+++.   .|+.|||+.+++|||||
T Consensus        80 ~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk  132 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRK-----SDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVC  132 (262)
T ss_pred             EEEEecccCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCC
Confidence            99999999 6998888753     23355555555444   89999999998887776

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.46  E-value=6.8e-13  Score=136.85  Aligned_cols=118  Identities=19%  Similarity=0.216  Sum_probs=95.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|++.+.||+|+||.||++. ..+++.+|+|.+....   .+.+.+|++++..+ +||||+++++++......++||||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATC-NHPYIVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhC-CCCcEeeeEEEEEeCCeEEEEEec
Confidence            458899999999999999975 5678999999988643   34678899888777 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|..++....     ..+....+..++.   .++.|||..+++|||+|
T Consensus        91 ~~~~~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk  137 (292)
T cd06644          91 CPGGAVDAIMLELD-----RGLTEPQIQVICRQMLEALQYLHSMKIIHRDLK  137 (292)
T ss_pred             CCCCcHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCC
Confidence            99 58888876532     2344455444444   89999999998877766

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.46  E-value=7.8e-13  Score=136.29  Aligned_cols=122  Identities=19%  Similarity=0.156  Sum_probs=96.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE-----E
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF-----V  542 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~-----~  542 (613)
                      .|+..+.||+|+||.||++. ..+++.||+|.++..     ....+.+|+.++.++.+||||+++++++...+.     .
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            48889999999999999975 567899999988752     224688899999888567999999999987665     8


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+||||++|+|.+++...... ....+++..+..++.   .+|.|||+.+++|||||
T Consensus        82 ~lv~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~  137 (295)
T cd07837          82 YLVFEYLDSDLKKFMDSNGRG-PGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLK  137 (295)
T ss_pred             EEEeeccCcCHHHHHHHhccc-CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence            999999999999998764321 123455555555444   89999999999888877

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.46  E-value=8.1e-13  Score=136.03  Aligned_cols=116  Identities=19%  Similarity=0.079  Sum_probs=94.5

Q ss_pred             EEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      |++.+.||+|+||.||++..    .+|+.||+|+++..       ..+.+.+|+++|.++.+|+||+++++++......|
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            67889999999999999743    47899999998752       23467889999988867999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++ |+|.+++....      .++...+..+   ++.+|.|||+.+++|||||
T Consensus        82 lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~  132 (290)
T cd05613          82 LILDYINGGELFTHLSQRE------RFKEQEVQIYSGEIVLALEHLHKLGIIYRDIK  132 (290)
T ss_pred             EEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            9999999 69999997532      3444444443   3389999999999888777

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.46  E-value=5.6e-13  Score=134.29  Aligned_cols=111  Identities=14%  Similarity=0.055  Sum_probs=87.4

Q ss_pred             eeEeecCceEEEEEEee-CC----------cEEEEEEeeccc--hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          479 KEIAKGSNGTVVLEGNY-EG----------RSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~-~g----------~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.||+|+||.||++... ++          ..+++|.+....  ...+.+|+++|.++ +||||+++++++.. +..++|
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQL-SHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcC-CCcchhheeeEEec-CCcEEE
Confidence            46899999999997533 33          358888877533  45888999888777 99999999999988 778999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.++++...     ..++..++..++.   .++.|||+.+++|||||
T Consensus        79 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlk  128 (259)
T cd05037          79 EEYVKFGPLDVFLHREK-----NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVC  128 (259)
T ss_pred             EEcCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCc
Confidence            99999 69999998642     1455555554443   89999999998887777

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.45  E-value=6e-13  Score=137.06  Aligned_cols=122  Identities=22%  Similarity=0.249  Sum_probs=96.1

Q ss_pred             eEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .|.+.+.||+|+||+||++..      .++..+|+|.+....   .+.+.+|++++.++ +||||+++++++...+..++
T Consensus         6 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           6 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL-QHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEecCCccEE
Confidence            488999999999999999742      334579999987632   34788999999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCC-------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGS-------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~-------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||++ |+|.+++......       .....+++.....++.   .++.|||+.+++|||||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlk  147 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLA  147 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccC
Confidence            999999 6999999864310       0122356555555544   89999999999887766

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.45  E-value=6.8e-13  Score=138.01  Aligned_cols=118  Identities=23%  Similarity=0.278  Sum_probs=95.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...+.||+|+||.||++. ..+++.||+|.+...      ..+.+.+|++++..+ +||||++++++|...+..|+|
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQL-RHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEEeCCeEEEE
Confidence            448888999999999999975 567899999998642      223688999988887 999999999999999999999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++|+|.+++....     ..+....+..+   ++.++.|||..+++||||+
T Consensus        94 ~e~~~g~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~  142 (307)
T cd06607          94 MEYCLGSASDILEVHK-----KPLQEVEIAAICHGALQGLAYLHSHERIHRDIK  142 (307)
T ss_pred             HHhhCCCHHHHHHHcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC
Confidence            9999999988886532     23455554444   3489999999999887766

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.45  E-value=7e-13  Score=136.00  Aligned_cols=114  Identities=26%  Similarity=0.176  Sum_probs=91.5

Q ss_pred             EEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~  543 (613)
                      |+..+.||+|+||+||++.     ..+++.||+|.++..    ..+.+.+|+++|.++ +||||+++++++...  ...+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   84 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTL-YHENIVKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCCceEE
Confidence            4888999999999998742     356789999998753    345788999999887 999999999988764  3689


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||++ |+|.+++...       .+++.++..++.   .++.|||+.+++|||||
T Consensus        85 lv~e~~~~~~l~~~~~~~-------~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlk  134 (283)
T cd05080          85 LIMEYVPLGSLRDYLPKH-------KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLA  134 (283)
T ss_pred             EEecCCCCCCHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHCCeeccccC
Confidence            9999999 6999999753       255555555544   89999999998887766

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PHA02988 hypothetical protein; Provisional

Probab=99.45  E-value=7.9e-13  Score=136.21  Aligned_cols=110  Identities=20%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEEEecC
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYLSLER  548 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~LV~E~  548 (613)
                      ..||+|++|.||++. .+|+.||||+++...      .+.+.+|+++|.++ +||||+++++++.+    ....++||||
T Consensus        26 ~~i~~g~~~~v~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         26 VLIKENDQNSIYKGI-FNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRI-DSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             eEEeeCCceEEEEEE-ECCEEEEEEeccccccccHHHHHHHHHHHHHHHhc-CCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            478999999999964 589999999997521      34677999999888 99999999999987    3478999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcC-Cceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~-~iiHrDlK  596 (613)
                      |+ |+|.++++..+      .++.....++   ++.++.+||.. +++|||||
T Consensus       104 ~~~g~L~~~l~~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlk  150 (283)
T PHA02988        104 CTRGYLREVLDKEK------DLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLT  150 (283)
T ss_pred             CCCCcHHHHHhhCC------CCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCC
Confidence            99 69999998642      2333333333   33899999984 77776666

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.45  E-value=6.6e-13  Score=136.80  Aligned_cols=124  Identities=19%  Similarity=0.209  Sum_probs=95.4

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|+..+.||+|+||.||++..      .....+|+|.+....    ...+.+|++++.++.+|+||+++++++...+..
T Consensus        12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~   91 (293)
T cd05053          12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPL   91 (293)
T ss_pred             hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCe
Confidence            3488999999999999999743      233679999987532    236788998887776899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||++ |+|.++++.....          .....++...+..++.   .++.|||..+++|||||
T Consensus        92 ~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlk  159 (293)
T cd05053          92 YVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLA  159 (293)
T ss_pred             EEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccc
Confidence            99999999 7999999864210          0123344444444443   89999999999888877

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=4.8e-13  Score=135.24  Aligned_cols=112  Identities=22%  Similarity=0.234  Sum_probs=88.8

Q ss_pred             eeEeecCceEEEEEE-eeCCcEEEEEEeeccch------HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHH------DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~------~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.||+|+||.||++. ..+++.||||.+++...      ..+..|...+....+|+||+++++++...+..|+||||++ 
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            568999999999984 56789999999875321      2345565555555699999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++..      ..+++.++.+++.   .+|.|||+.+++||||+
T Consensus        82 ~~L~~~l~~~------~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~  124 (260)
T cd05611          82 GDCASLIKTL------GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIK  124 (260)
T ss_pred             CCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            6999999753      2456666665544   89999999999887776

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.45  E-value=5.1e-13  Score=138.11  Aligned_cols=122  Identities=20%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             eEEEeeeEeecCceEEEEEEe-----------------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-----------------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRW  532 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-----------------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l  532 (613)
                      .|++.+.||+|+||.||++..                 .+...||+|.+...    ..+.+.+|+++|.++ +|+||+++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~   84 (296)
T cd05095           6 RLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRL-KDPNIIRL   84 (296)
T ss_pred             hceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCcceE
Confidence            488999999999999998631                 12346999998753    234788999999888 99999999


Q ss_pred             EEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCC-----ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          533 YGVESDQDFVYLSLERCT-CSLNDLIYVLSGSF-----EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       533 ~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~-----~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++...+..+++|||++ |+|.+++.......     ....+....+.+++.   .++.|||+.+++|||||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlk  157 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLA  157 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCC
Confidence            999999999999999999 69999998643110     011233444444443   89999999998776665

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.45  E-value=3.4e-13  Score=136.81  Aligned_cols=119  Identities=19%  Similarity=0.257  Sum_probs=96.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |.+.+.||+|+||.||++. ..+++.+|||.+...      ..+.+.+|++++..+ +||||+++++++...+..+++||
T Consensus         4 y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~~v~e   82 (267)
T cd08229           4 FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL-NHPNVIKYYASFIEDNELNIVLE   82 (267)
T ss_pred             hhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHc-cCCchhhhhheeEeCCeEEEEEE
Confidence            6778899999999999975 678999999987642      234788999988887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ ++|.+++.....  ....+++.....++.   .++.|||+.+++|+|||
T Consensus        83 ~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~  133 (267)
T cd08229          83 LADAGDLSRMIKHFKK--QKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIK  133 (267)
T ss_pred             ecCCCCHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            999 599999875321  223455555544443   89999999999887777

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.45  E-value=5.7e-13  Score=135.50  Aligned_cols=120  Identities=18%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             EEeeeEeecCceEEEEEEe-eCCc--EEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC------CE
Q 007199          476 VFNKEIAKGSNGTVVLEGN-YEGR--SVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ------DF  541 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~-~~g~--~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~------~~  541 (613)
                      .+.+.||+|+||.||++.. .++.  .+|+|.++..     ..+.+.+|++++..+ +||||+++++++...      ..
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEF-DHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEccCCcccCCCC
Confidence            4567899999999999853 3343  5899988652     234788899999887 999999999987532      25


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++|||++ |+|.+++...+.......++......++.   .|+.|||..+++|||||
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  139 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLA  139 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            789999999 79999886432111223345555544443   89999999999887777

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.45  E-value=7.6e-13  Score=138.20  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=95.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++..        .....+|+|+++..    ..+.+.+|++++.++.+||||+++++++...+
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG   91 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC
Confidence            3488999999999999999731        23457999998853    22367889988888767999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+++|||++ |+|.+++...+..          .....+......++   ++.++.|||+.+++|||||
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlk  161 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLA  161 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecccc
Confidence            9999999999 7999999864310          01123444444333   3389999999999888887

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.45  E-value=1.7e-12  Score=133.73  Aligned_cols=129  Identities=26%  Similarity=0.247  Sum_probs=99.7

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVY  543 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~  543 (613)
                      .+.|.+.+.||+|+||.||++. ..+++.+|+|.+...  ..+.+.+|+.++.++.+||||+++++++...+     ..+
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~  100 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLW  100 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeE
Confidence            3559999999999999999974 567899999998753  33567889988888778999999999987643     589


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +||||++ |+|.++++....  ....+++..+..++.   .++++||+.+++|||||    ++..++
T Consensus       101 lv~ey~~~~sL~~~~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~  165 (291)
T cd06639         101 LVLELCNGGSVTELVKGLLI--CGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEG  165 (291)
T ss_pred             EEEEECCCCcHHHHHHHhhh--cCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCC
Confidence            9999999 699999875321  223455555544443   89999999999888877    454444

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.45  E-value=4.1e-13  Score=141.20  Aligned_cols=113  Identities=19%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             eeEeec--CceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          479 KEIAKG--SNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       479 ~~LG~G--~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      ..||+|  +||+||++. ..+|+.||+|++...     ..+.+.+|+.++..+ +||||++++++|...+..++||||+.
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l-~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFF-RHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCcceEeeeEecCCceEEEEeccc
Confidence            356666  999999974 678999999998752     234678888777666 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ...+++..+..+   ++.+|.|||+.+++|||||
T Consensus        83 ~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlk  128 (328)
T cd08226          83 YGSANSLLKTYF----PEGMSEALIGNILFGALRGLNYLHQNGYIHRNIK  128 (328)
T ss_pred             CCCHHHHHHhhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence             69999998642    223555554343   3489999999999888877

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.45  E-value=8.5e-13  Score=135.06  Aligned_cols=123  Identities=16%  Similarity=0.056  Sum_probs=95.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeC-----CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYE-----GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESD-QDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~-----g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~  542 (613)
                      +.|.+.+.||+|+||.||++....     +..||+|++...    ..+.+.+|++++.++ +||||+++++++.. ....
T Consensus         6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL-SHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEecCCCCC
Confidence            458899999999999999985443     678999988752    234688999988888 99999999998776 4688


Q ss_pred             EEEecCCC-ccHHHHHHHhcCC--CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGS--FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~--~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++||++ |+|.+++...+..  .....++......++.   .|+.|||+.+++|||||
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~  144 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIA  144 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC
Confidence            99999999 7999999865311  0113455555555444   89999999999887777

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.45  E-value=9.5e-13  Score=132.85  Aligned_cols=117  Identities=23%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEE-eCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVES-DQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~-~~~~~~LV~E~~~-  550 (613)
                      .|.+.+.||+|+||.||++. ..|..||+|.++.. ..+.+.+|++++.++ +|+|++++++++. ..+..+++|||++ 
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~-~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (256)
T cd05082           7 ELKLLQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAK   84 (256)
T ss_pred             hCeeeeeecccCCCeEEEEE-EcCCcEEEEEeCCCchHHHHHHHHHHHHhC-CCCCeeeEEEEEEcCCCceEEEEECCCC
Confidence            37889999999999999964 45888999998763 345788999988887 9999999999765 4567999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++...    ...++......++   +.++.|||..+++|||||
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  129 (256)
T cd05082          85 GSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLA  129 (256)
T ss_pred             CcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccc
Confidence            69999998642    2234444444433   389999999998877766

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.45  E-value=6.4e-13  Score=135.78  Aligned_cols=122  Identities=24%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             eEEEeeeEeecCceEEEEEEe-----eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-----YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESD--QDFV  542 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-----~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~  542 (613)
                      .|...+.||+|+||.||++..     .++..+|||.+....    .+.+.+|++.+..+ +||||+++++++..  ....
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l-~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTL-DHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhC-CCCChheEEeeeecCCCCce
Confidence            367778999999999999752     347889999998643    45799999999887 99999999999887  5589


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCC
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKAN  601 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~d  601 (613)
                      +++|||++ |+|.+++....     ..+.......++   ..+|.+||..+++|||+|    +++.+
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~  145 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHR-----DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESE  145 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCc-----cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCC
Confidence            99999999 69999998642     134444444433   389999999999888877    55544

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.45  E-value=8e-13  Score=135.29  Aligned_cols=117  Identities=21%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      ..|++.+.||+|+||.||++. ..+|+    .+|+|.+....    ...+.+|++.+.++ +||||+++++++.. ...+
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~-~~~~   84 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASV-DHPHVVRLLGICLS-SQVQ   84 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEec-CceE
Confidence            348889999999999999975 34443    58999887632    34788999999887 99999999999987 7899


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++ |+|.++++...     ..+++..+.+++.   .|+.|||+.+++|||||
T Consensus        85 ~v~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~  136 (279)
T cd05057          85 LITQLMPLGCLLDYVRNHK-----DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLA  136 (279)
T ss_pred             EEEecCCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccC
Confidence            9999999 79999998642     2345555544444   89999999998887766

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.45  E-value=5.5e-13  Score=137.38  Aligned_cols=121  Identities=21%  Similarity=0.201  Sum_probs=92.2

Q ss_pred             EEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      |++.+.||+|+||.||++..      .....+|+|.+....    .+.+.+|++++..+ +||||+++++.+...+..++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQV-NHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhC-CCCCEeeEEEEEecCCCcEE
Confidence            67788999999999999742      123578999887532    34688999988877 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCC------------------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSF------------------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~------------------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||+. |+|.+++...+...                  ....++...+..++.   .++.|||+.+++|||||
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dik  154 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLA  154 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhh
Confidence            999999 79999997642110                  011234444444333   89999999999887777

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.45  E-value=8.6e-13  Score=134.30  Aligned_cols=115  Identities=23%  Similarity=0.204  Sum_probs=92.9

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-------------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-------------HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-------------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      |...+.||+|+||.||++. ..+|+.+|+|.++..             ..+.+.+|++++.++ +||||+++++++...+
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~   81 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDL-DHLNIVQYLGFETTEE   81 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhc-CCCCcceEEEEeccCC
Confidence            6788899999999999974 567899999988631             123577899888777 9999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..++||||++ |+|.++++..      ..+...++..   .++.++.+||+.+++|||||
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~------~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  135 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTY------GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLK  135 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCC
Confidence            9999999999 6999999753      2344444443   34489999999998887776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.45  E-value=6.4e-13  Score=137.53  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=94.0

Q ss_pred             eEEEeeeEeecCceEEEEEEe-eCCc--EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-YEGR--SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-~~g~--~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.++||+|+||.||++.. .++.  .+|+|.++..    ..+.+.+|++++.++.+||||+++++++...+..+++|
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~   82 (297)
T cd05089           3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAI   82 (297)
T ss_pred             cceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEE
Confidence            478899999999999999753 3443  4788888742    23468899999988868999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCC----------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSF----------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~----------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.++++......          ....++...+..++.   .|+.|||+.+++|||||
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlk  146 (297)
T cd05089          83 EYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLA  146 (297)
T ss_pred             EecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCC
Confidence            9999 79999997642110          012344444444433   89999999999887776

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.45  E-value=8.6e-13  Score=134.56  Aligned_cols=129  Identities=15%  Similarity=0.083  Sum_probs=97.4

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      .++..||+|.+....    ...+.+|+++|..+ +||||+++++++......
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEF-NCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhC-CCCceeEEEEEEcCCCCc
Confidence            3488999999999999999742      234689999987532    23688999988887 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC----ccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF----EEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~----~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++||||++ |+|.+++.......    ....+....+.++   ++.++.|||+.+++|||||    ++..++
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~  156 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDL  156 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCC
Confidence            99999999 79999998643110    0112344444443   3389999999999888776    555444

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.45  E-value=5.1e-13  Score=136.68  Aligned_cols=121  Identities=23%  Similarity=0.202  Sum_probs=96.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|...+.||+|+||.||++. ..+++.||+|.+...    ..+.+.+|+..+.++ +||||+++++++...+..++||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC-DSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhc-CCCCEeEEEEEEEeCCeEEEEEEe
Confidence            47788899999999999974 567899999988742    234688899988887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++ |+|.+++...       .++...+..++   +.++.+||..+++|+|+|    ++..++
T Consensus        84 ~~~~~l~~~i~~~-------~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~  138 (277)
T cd06641          84 LGGGSALDLLEPG-------PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHG  138 (277)
T ss_pred             CCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCC
Confidence            99 6999998642       23444444333   389999999999888877    554444

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.45  E-value=1.2e-12  Score=134.00  Aligned_cols=116  Identities=21%  Similarity=0.231  Sum_probs=95.7

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |++.+.||+|+||.||++. ..+|+.||+|++....     .+.+.+|+.++.++ +||||+++++++...+..++||||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC-QHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhC-CCCCCcceeeEEecCCeeEEEecc
Confidence            7888999999999999985 5678999999988532     34788999999888 899999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +.++|.+++....     ..+.+..+..++   +.++.|||+.+++|+|||
T Consensus        81 ~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  126 (286)
T cd07832          81 MPSDLSEVLRDEE-----RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLK  126 (286)
T ss_pred             cCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcC
Confidence            9669999997632     334555554443   389999999998887777

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-13  Score=149.00  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=96.7

Q ss_pred             eEeecCceEEEEE-EeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccHH
Q 007199          480 EIAKGSNGTVVLE-GNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSLN  554 (613)
Q Consensus       480 ~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL~  554 (613)
                      +||+|.||+||-+ .+.+...+|||.+...   ..+-+..||....++ +|.|||+++|++..++++-|.||-++ |||.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~L-rHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTL-RHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHH-hhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            6999999999986 4777888999999863   334678899766666 99999999999999999999999999 6999


Q ss_pred             HHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          555 DLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       555 ~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|+..-+......-......+++.+||+|||.+.|+|||||
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIK  702 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIK  702 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeecccc
Confidence            999986554444444555666777799999999999999998

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.45  E-value=7.3e-13  Score=136.22  Aligned_cols=122  Identities=20%  Similarity=0.144  Sum_probs=94.5

Q ss_pred             eEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .|+..+.||+|+||.||++..      .++..||+|++....    .+.+.+|++.+.++ +||||+++++++...+..+
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l-~h~~iv~~~~~~~~~~~~~   84 (288)
T cd05050           6 NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF-DHPNIVKLLGVCAVGKPMC   84 (288)
T ss_pred             hceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhc-CCCchheEEEEEcCCCccE
Confidence            378889999999999999753      256789999987632    34688999988887 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCc----------------cccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFE----------------EQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~----------------~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||++ |+|.+++........                ...++...+..++.   .++.|||..+++|||||
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~  157 (288)
T cd05050          85 LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLA  157 (288)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            9999999 699999986421100                11233343333333   89999999999887777

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.45  E-value=7.3e-13  Score=133.55  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=92.6

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      .|++.+.||+|+||.||++ ..+++.||+|.++.. ..+.+.+|+.++.++ +||||+++++++... ..+++|||++ |
T Consensus         7 ~~~~~~~lg~g~~g~v~~~-~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~-~~~~v~e~~~~~   83 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQG-EYTGQKVAVKNIKCDVTAQAFLEETAVMTKL-HHKNLVRLLGVILHN-GLYIVMELMSKG   83 (254)
T ss_pred             HceeeeeeccCCCCceEec-ccCCCceEEEeecCcchHHHHHHHHHHHHhC-CCCCcCeEEEEEcCC-CcEEEEECCCCC
Confidence            3889999999999999985 467889999998763 445788999988777 999999999998754 5799999999 6


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++....    ...+++.....   .++.++.+||+.+++|||+|
T Consensus        84 ~L~~~l~~~~----~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~  127 (254)
T cd05083          84 NLVNFLRTRG----RALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLA  127 (254)
T ss_pred             CHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC
Confidence            9999998642    22344444433   33489999999999887776

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.45  E-value=3.1e-13  Score=138.71  Aligned_cols=119  Identities=19%  Similarity=0.161  Sum_probs=95.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|++.+.||+|+||.||++. ..++..||+|.++..    ..+.+.+|++++.++ +||||+++++++...+..++||||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKA-VSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhc-CCCcHHhhhhheecCCeEEEEEee
Confidence            37788999999999999975 457899999988753    234788999999887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      |+ ++|.++++...   ....+++..+.+++.   .++.|||. .+++|||||
T Consensus        81 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~  130 (286)
T cd06622          81 MDAGSLDKLYAGGV---ATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVK  130 (286)
T ss_pred             cCCCCHHHHHHhcc---ccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCC
Confidence            99 59999887532   123455555555544   89999996 588887776

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.44  E-value=8e-13  Score=133.02  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=95.9

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |...+.||+|+||.||++. ..+|..+|+|.+...     ..+.+.+|++++.++ +|+||+++++.+...+..++|+||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~-~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKM-KHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhC-CCCChhhhhheeccCCeEEEEEec
Confidence            7888999999999999974 667899999998752     345788999988877 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++....    ...+++.....++.   .++.|||+.+++|+|+|
T Consensus        81 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~  128 (257)
T cd08225          81 CDGGDLMKRINRQR----GVLFSEDQILSWFVQISLGLKHIHDRKILHRDIK  128 (257)
T ss_pred             CCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC
Confidence            99 59999997542    22344444444433   89999999999888887

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.44  E-value=7e-13  Score=136.71  Aligned_cols=117  Identities=25%  Similarity=0.251  Sum_probs=95.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV  545 (613)
                      .|+..+.||+|+||.||++. ..+++.+|+|.++...     ...+.+|++++.++ +||||+++++++...  +..|||
T Consensus         6 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           6 EYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKL-QHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhc-CCCCEEEEEEEEEecCCCcEEEE
Confidence            37888999999999999985 5578899999997522     22567899989888 899999999999887  899999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++++|.+++....     ..+.......++.   .+|.|||..+++|||||
T Consensus        85 ~e~~~~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~  133 (293)
T cd07843          85 MEYVEHDLKSLMETMK-----QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLK  133 (293)
T ss_pred             ehhcCcCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC
Confidence            9999999999987642     2455555555544   89999999999888877

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.44  E-value=8.8e-13  Score=134.92  Aligned_cols=123  Identities=19%  Similarity=0.063  Sum_probs=96.2

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-e-----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-Y-----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~-----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++.. .     .+..||+|.+...    ....+.+|+.++.++ +|+||+++++++...+..
T Consensus         6 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKF-NHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCCc
Confidence            3488999999999999999753 3     4678999988742    223688999988887 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC-ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF-EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~-~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ |+|.++++..+... ....+++..+.+++.   .++.|||+.+++|||||
T Consensus        85 ~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk  143 (277)
T cd05036          85 FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIA  143 (277)
T ss_pred             EEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc
Confidence            99999999 69999998754211 112455555555443   89999999998877666

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.44  E-value=4.8e-13  Score=135.08  Aligned_cols=122  Identities=21%  Similarity=0.168  Sum_probs=99.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |++.+.||+|+||.||++. ..++..||+|.+.+.      ..+.+.+|++.+.++ +||||+++++++...+..++|+|
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL-NHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             ceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhC-CCCChHHHHHhhcCCCeEEEEEe
Confidence            7889999999999999985 457899999999752      345788999999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCCc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |+. ++|.+++...      ..+....+..++   ++++.|||..+++|+|||    ++..++.
T Consensus        81 ~~~~~~L~~~l~~~------~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~  138 (258)
T cd05578          81 LLLGGDLRYHLSQK------VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGH  138 (258)
T ss_pred             CCCCCCHHHHHHhc------CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCC
Confidence            999 5999999753      234444444443   389999999999888887    5555554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.44  E-value=9.9e-13  Score=133.56  Aligned_cols=117  Identities=21%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             eEEEeeeEeecCceEEEEEEe-eCCc---EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-YEGR---SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-~~g~---~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .|...+.||+|+||.||++.. .++.   .+|+|.++..    ..+.+.+|++++.++ +||||+++++++...+..++|
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           6 HITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQF-SHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcC-CCCCeeEEEEEEccCCCcEEE
Confidence            478889999999999999753 3333   7999998753    234688999888777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.++++...     ..++......++   ..++.|||+.+++|||+|
T Consensus        85 ~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlk  134 (268)
T cd05063          85 TEYMENGALDKYLRDHD-----GEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLA  134 (268)
T ss_pred             EEcCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            99999 69999997632     233444444333   389999999998887776

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.44  E-value=1.6e-12  Score=131.05  Aligned_cols=117  Identities=21%  Similarity=0.283  Sum_probs=94.3

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|+||.||++ ...+|+.||+|++...     ..+++.+|+++++++ +||||+++++++...+..++||||
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNM-KHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhC-CCCCeeeeEeeecCCCeEEEEEec
Confidence            788999999999999997 4567899999998742     234788999999887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++....    ....+..+..+++.   .++.+||+.+++|+|++
T Consensus        81 ~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~  128 (256)
T cd08218          81 CEGGDLYKKINAQR----GVLFPEDQILDWFVQICLALKHVHDRKILHRDIK  128 (256)
T ss_pred             CCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence            99 59999997532    22344444444333   89999999988777666

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.44  E-value=1.3e-12  Score=135.46  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=96.1

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|...+.||.|+||.||++ ...+++.||+|.+...   ..+.+.+|+..+..+ +||||+++++++...+..++|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKEL-KNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhc-CCCceeeeeeeEecCceEEEEEEe
Confidence            45999999999999999997 4678999999988752   345788899888777 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|.+++...       .++...+..++   ..++.+||+.+++|||||
T Consensus        98 ~~~~~L~~~~~~~-------~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~  142 (296)
T cd06655          98 LAGGSLTDVVTET-------CMDEAQIAAVCRECLQALEFLHANQVIHRDIK  142 (296)
T ss_pred             cCCCcHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            99 6999988642       24445554443   389999999999888877

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=3.2e-12  Score=133.94  Aligned_cols=128  Identities=18%  Similarity=0.079  Sum_probs=102.2

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCC----C---CcceeEEEEEEeC---
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQ----H---PNIVRWYGVESDQ---  539 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~----H---pnIV~l~g~~~~~---  539 (613)
                      .+|.+.++||-|.|++||+| .....+.||+|+.+.  ...+....||.+|++.-.    |   .+||+|++.|...   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpN  157 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPN  157 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCC
Confidence            45889999999999999998 688889999999996  345678899999987622    3   3799999999854   


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                       .++|||+|++.-+|..+|+..    ....+++..+..+   ++.||.|||+.      +.++|.|+||+|+||-
T Consensus       158 G~HVCMVfEvLGdnLLklI~~s----~YrGlpl~~VK~I~~qvL~GLdYLH~e------cgIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  158 GQHVCMVFEVLGDNLLKLIKYS----NYRGLPLSCVKEICRQVLTGLDYLHRE------CGIIHTDLKPENVLLC  222 (590)
T ss_pred             CcEEEEEehhhhhHHHHHHHHh----CCCCCcHHHHHHHHHHHHHHHHHHHHh------cCccccCCCcceeeee
Confidence             489999999998999999875    4556666555444   44889998864      3456788889999883

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.44  E-value=1.2e-12  Score=131.79  Aligned_cols=115  Identities=26%  Similarity=0.204  Sum_probs=93.1

Q ss_pred             EEEeeeEeecCceEEEEEEe-eCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~-~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |+..+.||+|+||+||++.. .+++.||+|.+...        ..+.+.+|++++.++ +|+||+++++++...+..+++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKL-QHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhc-CCCCchheeeeEecCCeEEEE
Confidence            56678999999999999854 48899999988652        234788999988887 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ ++|.+++....      .+.......+   ++.++.+||+.+++|+|||
T Consensus        81 ~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  129 (258)
T cd06632          81 LELVPGGSLAKLLKKYG------SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIK  129 (258)
T ss_pred             EEecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            99999 59999997532      2334343333   3489999999999888777

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.44  E-value=1e-12  Score=134.51  Aligned_cols=117  Identities=20%  Similarity=0.105  Sum_probs=91.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|+..+.||+|+||+||++. ..+++    .||+|.++..    ....+.+|+.++..+ .||||+++++++.. ...+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~-~~~~   84 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGV-GSPYVCRLLGICLT-STVQ   84 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhc-CCCCCceEEEEEcC-CCcE
Confidence            348899999999999999984 45555    4899998752    234678899888777 99999999999975 4578


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||++ |+|.++++...     ..+++....+++.   .|+.|||+.+++|||||
T Consensus        85 l~~~~~~~g~l~~~l~~~~-----~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlk  136 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENK-----DRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLA  136 (279)
T ss_pred             EEEEcCCCCCHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            9999999 79999997532     2345555554444   89999999999887776

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.44  E-value=1.5e-12  Score=134.90  Aligned_cols=117  Identities=19%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-------
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQD-------  540 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-------  540 (613)
                      .|...+.||+|+||.||++. ..+++.||||++....     ...+.+|++++.++ +||||+++++++...+       
T Consensus        13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLL-KHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhC-CCCCccceEEEEecccccccCCC
Confidence            48999999999999999974 5679999999886421     22567899888777 9999999999987654       


Q ss_pred             -EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 -FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 -~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       ..++||||++++|.+++...     ...+++..+..++.   .|+.|||+.+++|+|||
T Consensus        92 ~~~~lv~e~~~~~l~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~  146 (310)
T cd07865          92 GSFYLVFEFCEHDLAGLLSNK-----NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMK  146 (310)
T ss_pred             ceEEEEEcCCCcCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence             45999999999999888753     22345555554443   89999999999887776

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.44  E-value=9.5e-13  Score=138.59  Aligned_cols=119  Identities=18%  Similarity=0.153  Sum_probs=95.0

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD-QDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~  542 (613)
                      .+.+.|...+.||+|+||.||++. ..+++.||+|++.+.     ..+.+.+|++++.++ +||||++++++|.. .+..
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~   85 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHL-RHENIISLSDIFISPLEDI   85 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhc-CCCCeeeEeeeEecCCCcE
Confidence            355669999999999999999974 678999999988642     234678899999888 99999999999876 4578


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHH---HHHHHHHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKE---QDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~---~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||+.++|.++++..       .++..   .+...++.++.|||+.+++|||+|
T Consensus        86 ~lv~e~~~~~L~~~~~~~-------~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~  135 (328)
T cd07856          86 YFVTELLGTDLHRLLTSR-------PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLK  135 (328)
T ss_pred             EEEeehhccCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            999999988999888642       12322   333444489999999999888877

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.43  E-value=7.1e-13  Score=139.62  Aligned_cols=117  Identities=18%  Similarity=0.185  Sum_probs=93.7

Q ss_pred             ceEE-EeeeEeecCceEEEEEE-eeCCcEEEEEEeeccch-----------------HHHHHHHHHHHhcCCCCcceeEE
Q 007199          473 KLVV-FNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHH-----------------DVALKEIQNLIASDQHPNIVRWY  533 (613)
Q Consensus       473 ~~~~-~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~-----------------~~~~~Ei~~L~~l~~HpnIV~l~  533 (613)
                      ++|. +.+.||+|+||+||++. ..+++.||||.++....                 ..+.+|++++.++ +||||++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~   86 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEI-KHENIMGLV   86 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhC-CCcceeeee
Confidence            3343 56789999999999985 56789999998875211                 1477899989887 999999999


Q ss_pred             EEEEeCCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          534 GVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       534 g~~~~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++...+..+++|||+.|+|.+++....      .+++.....++   +.++.+||..+++|+|||
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~------~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~  146 (335)
T PTZ00024         87 DVYVEGDFINLVMDIMASDLKKVVDRKI------RLTESQVKCILLQILNGLNVLHKWYFMHRDLS  146 (335)
T ss_pred             EEEecCCcEEEEEeccccCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            9999999999999999999999997532      34444444443   389999999999888887

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.43  E-value=9.9e-13  Score=138.75  Aligned_cols=118  Identities=20%  Similarity=0.187  Sum_probs=94.2

Q ss_pred             cCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----  540 (613)
                      +++.|.+.+.||+|+||.||++ ...+|+.||+|.+...    ....+.+|++++.++ +||||+++++++....     
T Consensus         3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~   81 (336)
T cd07849           3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRF-KHENIIGILDIIRPPSFESFN   81 (336)
T ss_pred             cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhC-CCCCcCchhheeecccccccc
Confidence            3456999999999999999997 4678999999998742    234678899988888 9999999999876543     


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|+++||++++|.+++...       .+++..+..++.   .+|.+||+.+++|||||
T Consensus        82 ~~~lv~e~~~~~l~~~~~~~-------~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlk  133 (336)
T cd07849          82 DVYIVQELMETDLYKLIKTQ-------HLSNDHIQYFLYQILRGLKYIHSANVLHRDLK  133 (336)
T ss_pred             eEEEEehhcccCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            58999999999998888642       344555444443   89999999999888777

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.43  E-value=2.3e-12  Score=130.29  Aligned_cols=119  Identities=21%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|++.+.||+|+||+||++. ..++..+|+|++...    ..+.+.+|++.|..+ +|+||+++++.+...+..+++||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQC-NHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhc-CCCCEEEEEEEEeeCCEEEEEEec
Confidence            48889999999999999985 557889999998752    345788999988777 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.++++...   ....+.+..+..++   ..++.+||+.+++|||+|
T Consensus        81 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~  129 (267)
T cd06610          81 LSGGSLLDIMKSSY---PRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIK  129 (267)
T ss_pred             cCCCcHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            99 59999998642   12334544444443   389999999999988887

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.43  E-value=1e-12  Score=135.97  Aligned_cols=118  Identities=21%  Similarity=0.173  Sum_probs=94.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD------  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------  540 (613)
                      +.|++.+.||+|+||.||++. ..+|+.||+|+++..     ....+.+|++++.++ +||||+++++++...+      
T Consensus         7 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~~~~~~~~~~~~~~~~   85 (302)
T cd07864           7 DKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL-NHRNIVNLKEIVTDKQDALDFK   85 (302)
T ss_pred             hhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhC-CCCCeeeeeheecCcchhhhcc
Confidence            448889999999999999975 567899999999752     223677899888888 9999999999988655      


Q ss_pred             ----EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 ----FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ----~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                          ..++|+||++|+|.+++...     ...+....+..++.   .||.|||..+++|||+|
T Consensus        86 ~~~~~~~lv~e~~~~~l~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~  143 (302)
T cd07864          86 KDKGAFYLVFEYMDHDLMGLLESG-----LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIK  143 (302)
T ss_pred             ccCCcEEEEEcccCccHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence                79999999999888887642     22355555555444   89999999999888887

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.43  E-value=1.1e-12  Score=137.30  Aligned_cols=120  Identities=23%  Similarity=0.257  Sum_probs=95.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.+.|...+.||+|+||.||++. ..++..+|+|++...      ....+.+|++++.++ +|||++++++++...+..+
T Consensus        23 ~~~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~  101 (317)
T cd06635          23 PEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI-KHPNSIEYKGCYLREHTAW  101 (317)
T ss_pred             chhhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhC-CCCCEEEEEEEEeeCCeEE
Confidence            33447888899999999999975 567899999998742      123678899999887 9999999999999999999


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++|+|.+++....     ..++...+..+   ++.++.|||..+++|||||
T Consensus       102 lv~e~~~g~l~~~~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~  152 (317)
T cd06635         102 LVMEYCLGSASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK  152 (317)
T ss_pred             EEEeCCCCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            999999999988886532     23444444443   3389999999998877766

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.43  E-value=1.3e-12  Score=132.43  Aligned_cols=115  Identities=26%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------------HDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      |.+...||+|+||.||++. ..+++.+|+|.+....            .+.+.+|++++.++ +||||+++++++...+.
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKEL-QHENIVQYLGSSLDADH   80 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhc-CCCCeeeEEEEEEeCCc
Confidence            5667899999999999974 5678899999886421            13578899989888 99999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++|||++ ++|.+++....      .++...+..+   +..++.+||+.+++|||||
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~  133 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYG------AFEETLVRNFVRQILKGLNYLHNRGIIHRDIK  133 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhcc------CccHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence            999999999 59999997542      2344443333   3389999999999887776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.43  E-value=6.4e-13  Score=136.46  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=93.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |++.+.||+|+||+||++. ..+|+.||+|.+...    ..+.+.+|++++..+ +||||+++++++...+..++||||+
T Consensus         7 ~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   85 (284)
T cd06620           7 LETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHEC-RSPYIVSFYGAFLNENNICMCMEFM   85 (284)
T ss_pred             HHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHc-CCCCcceEeeeEecCCEEEEEEecC
Confidence            7788899999999999974 567899999988753    234788999999887 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      + |+|.+++...      ..+...+...+..   .++.|||. .+++|||+|
T Consensus        86 ~~~~L~~~~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~  131 (284)
T cd06620          86 DCGSLDRIYKKG------GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIK  131 (284)
T ss_pred             CCCCHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCC
Confidence            9 6999988753      2345555555444   78999996 577777666

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.43  E-value=7.1e-14  Score=138.79  Aligned_cols=120  Identities=19%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             EEEeeeEeecCceEEEEEEe---eCCc--EEEEEEeecc----c-hHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN---YEGR--SVAVKRLVKT----H-HDVALKEIQNLIASDQHPNIVRWYGVESD-QDFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~---~~g~--~VAVK~l~~~----~-~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~~  543 (613)
                      |+....||+|.||.||+|..   .+.+  .+|+|.++.+    + .....+|+..++.+ +||||+.|..+|.. +..++
T Consensus        26 ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl-~h~nvi~Lv~Vfl~~d~~v~  104 (438)
T KOG0666|consen   26 YEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLREL-KHPNVISLVKVFLSHDKKVW  104 (438)
T ss_pred             hhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHh-cCCcchhHHHHHhccCceEE
Confidence            78888999999999999842   2222  6899999864    2 23678999666556 99999999999988 66899


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++||.+-+|.+.|+.++... ...++...+..++.   .|++|||++-|+|||||
T Consensus       105 l~fdYAEhDL~~II~fHr~~~-~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLK  159 (438)
T KOG0666|consen  105 LLFDYAEHDLWHIIKFHRASK-AKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLK  159 (438)
T ss_pred             EEehhhhhhHHHHHHHhccch-hccCCHHHHHHHHHHHHhhhHHHhhhheeeccCC
Confidence            999999999999999886432 24566555555554   89999999999877765

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.43  E-value=1.2e-12  Score=134.19  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=98.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEe------CCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESD------QDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~------~~~~~L  544 (613)
                      .|++.+.||+|+||.||++. ..+++.+|+|.+...  ....+..|+.++.++.+|+||+++++++..      .+..|+
T Consensus        17 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~i   96 (282)
T cd06636          17 IFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWL   96 (282)
T ss_pred             hhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEE
Confidence            47888999999999999974 577899999998753  334778899888887789999999999863      457899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +|||++ |+|.+++...+    ...+++.++..++   +.++.|||+.+++|||+|    ++..++
T Consensus        97 v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~  158 (282)
T cd06636          97 VMEFCGAGSVTDLVKNTK----GNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENA  158 (282)
T ss_pred             EEEeCCCCcHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC
Confidence            999999 69999997642    2335555554443   389999999999888877    555444

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.43  E-value=2.2e-13  Score=131.76  Aligned_cols=121  Identities=23%  Similarity=0.186  Sum_probs=101.6

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~  543 (613)
                      ++|.+.+.||+|+|+.||++ +..+++.+|+|++.-   +..+..++|++.-+++ +|||+++++++...+.     +.|
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf-~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKF-NSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhh-CCcchHHHHHHHHHhhccCceeEE
Confidence            56999999999999999996 588999999999885   3455789999888777 9999999998876443     599


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK  596 (613)
                      |++.|.. |+|.+.+.....  +...+++..+..++.   .||.+||...  ..|||||
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~--kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiK  156 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKI--KGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIK  156 (302)
T ss_pred             EEeehhccccHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCC
Confidence            9999999 999999987653  455677777776665   9999999988  8888887

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.43  E-value=1.2e-12  Score=132.44  Aligned_cols=110  Identities=21%  Similarity=0.189  Sum_probs=87.1

Q ss_pred             eEeecCceEEEEEEe---eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          480 EIAKGSNGTVVLEGN---YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      .||+|+||.||++..   ..+..||+|.+....    .+.+.+|++++.++ +||||+++++++. .+..++||||++ |
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l-~h~~ii~~~~~~~-~~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQL-DNPYIVRMIGVCE-AEALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhc-CCCCeEEEEEEEc-CCCeEEEEEeCCCC
Confidence            489999999999742   345679999987532    34688999999887 9999999999885 457899999999 6


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++...     ...+++..+.+++.   .++.|||..+++|||||
T Consensus        80 ~L~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  122 (257)
T cd05115          80 PLNKFLSGK-----KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLA  122 (257)
T ss_pred             CHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccc
Confidence            999999753     23456666655554   89999999999887776

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.43  E-value=1.2e-12  Score=126.56  Aligned_cols=152  Identities=14%  Similarity=0.119  Sum_probs=127.6

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIR  127 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~  127 (613)
                      ..+||.|+-.|.+-|||+.||+++|.-..|..|-.+.-    ..++.+++++- .|.||.++.+||.+ .|.|.+.+-|.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~----vvgdfVV~GCy-~g~lYfl~~~tGs~-~w~f~~~~~vk   96 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI----VVGDFVVLGCY-SGGLYFLCVKTGSQ-IWNFVILETVK   96 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE----EECCEEEEEEc-cCcEEEEEecchhh-eeeeeehhhhc
Confidence            47899999999999999999999999988988887721    12234555555 99999999999999 99999999999


Q ss_pred             hCceeec-CCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEE
Q 007199          128 RMPYISK-DGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYI  206 (613)
Q Consensus       128 ~sP~~~~-dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  206 (613)
                      .+|...- .|.+|.||.|+++||||++|-.-+|+..-++.+..+|+.+.                        .++.+|+
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~------------------------g~~sly~  152 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP------------------------GDGSLYA  152 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC------------------------CCceEEE
Confidence            9988654 46899999999999999999999999988887765664332                        1458999


Q ss_pred             EeeeeEEEEEeCCCC--ceEEEEEe
Q 007199          207 MRTDYVLQSTSQDSG--EVLWNVAY  229 (613)
Q Consensus       207 gr~d~~l~a~d~~~G--~~~Wn~t~  229 (613)
                      ..+-+.|-|+.++++  .+.|..+.
T Consensus       153 a~t~G~vlavt~~~~~~~~~w~~~~  177 (354)
T KOG4649|consen  153 AITAGAVLAVTKNPYSSTEFWAATR  177 (354)
T ss_pred             EeccceEEEEccCCCCcceehhhhc
Confidence            999999999999998  78887654

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.43  E-value=9.4e-13  Score=135.75  Aligned_cols=122  Identities=20%  Similarity=0.143  Sum_probs=94.7

Q ss_pred             eEEEeeeEeecCceEEEEEEee-----------------CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNY-----------------EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRW  532 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~-----------------~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l  532 (613)
                      .|.+.+.||+|+||.||++...                 .+..||+|.+...    ..+.+.+|++++.++ +||||+++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~   84 (296)
T cd05051           6 PLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRL-SDPNIARL   84 (296)
T ss_pred             hCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhc-CCCCEeEE
Confidence            4788999999999999986421                 2346899998863    244788999999888 99999999


Q ss_pred             EEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCC-----ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          533 YGVESDQDFVYLSLERCT-CSLNDLIYVLSGSF-----EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       533 ~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~-----~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++...+..+++|||++ ++|.+++.......     ....++...+..++.   .++.|||+.+++|||||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlk  157 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLA  157 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence            999999999999999999 69999998643100     112355555554443   89999999999887776

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.43  E-value=1.9e-12  Score=134.67  Aligned_cols=118  Identities=24%  Similarity=0.268  Sum_probs=94.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~L  544 (613)
                      +.|+..+.||+|+||.||++. ..+|+.||+|.++...     ...+.+|++++.++ +|+||+++++++...  +..++
T Consensus         7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNL-RHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhC-CCCCCcceEEEEecCCCCeEEE
Confidence            348999999999999999984 5679999999987532     12467899999887 999999999998765  57899


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+.++|.+++....     ..++...+..++   ..++.|||+.+++|||||
T Consensus        86 v~e~~~~~l~~~l~~~~-----~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  135 (309)
T cd07845          86 VMEYCEQDLASLLDNMP-----TPFSESQVKCLMLQLLRGLQYLHENFIIHRDLK  135 (309)
T ss_pred             EEecCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            99999999999987632     234444444443   389999999999887777

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.43  E-value=7.7e-13  Score=135.61  Aligned_cols=116  Identities=19%  Similarity=0.188  Sum_probs=92.6

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      |++.+.||+|+||.||++. ..++..+|+|.+....   .+.+.+|++++..+ +||||+++++++...+..++||||++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASC-DHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHC-CCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            6777889999999999975 5568889999987532   34688899988887 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|..++....     ..+++..+..++   +.+|.|||+.+++|||||
T Consensus        86 ~~~l~~~~~~~~-----~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlk  130 (282)
T cd06643          86 GGAVDAVMLELE-----RPLTEPQIRVVCKQTLEALNYLHENKIIHRDLK  130 (282)
T ss_pred             CCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence             69988876522     234444444433   389999999998877666

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.43  E-value=9.5e-13  Score=134.97  Aligned_cols=122  Identities=22%  Similarity=0.232  Sum_probs=94.7

Q ss_pred             eEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .+...++||+|+||.||++..      .++..+|+|.+...   ..+.+.+|++++..+ +|+||+++++++...+..++
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVL-QHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcC-CCCCCceEEEEEecCCceEE
Confidence            378889999999999999742      34568999988763   234789999988877 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCC---------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGS---------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~---------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||++ |+|.++++.....         .....+++..+..++.   .++.|||+.+++|||||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlk  149 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLA  149 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            999999 6999999864310         0012344444444333   89999999998887776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.42  E-value=6e-13  Score=140.74  Aligned_cols=88  Identities=23%  Similarity=0.345  Sum_probs=72.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-DF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~  541 (613)
                      ++|++.+.||+|+||.||++.      ..+++.||+|+++..    ..+.+.+|++++.++.+|+||++++++|... ..
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            348899999999999999973      234578999998752    2346778999998887899999999988754 57


Q ss_pred             EEEEecCCC-ccHHHHHHHh
Q 007199          542 VYLSLERCT-CSLNDLIYVL  560 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~  560 (613)
                      ++++|||++ |+|.++|...
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~  106 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSK  106 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhc
Confidence            899999999 6999999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.42  E-value=1.3e-12  Score=133.77  Aligned_cols=122  Identities=20%  Similarity=0.160  Sum_probs=93.6

Q ss_pred             eEEEeeeEeecCceEEEEEEee------CCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNY------EGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~------~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .|++.+.||+|+||.||++...      ....||+|.+....    .+.+.+|++.+.++ +||||+++++++...+..+
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l-~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDL-QHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhc-CCcccceEEEEEcCCCceE
Confidence            3788899999999999997532      22579999987532    34688999999887 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCc----------cccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFE----------EQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~----------~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||++ |+|.+++........          ...++...+..++   +.++.|||..+++|||||
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlk  151 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLA  151 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            9999999 699999986431100          1234444444433   389999999998877666

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.42  E-value=1.2e-12  Score=139.16  Aligned_cols=123  Identities=24%  Similarity=0.219  Sum_probs=96.2

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-----  539 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----  539 (613)
                      +.+.|+..+.||+|+||.||++. ..+++.||+|++.+.     ..+.+.+|+.++.++ +||||+++++++...     
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   92 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLV-NHKNIIGLLNVFTPQKSLEE   92 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhc-CCCCCcceeeeeccCCCccc
Confidence            44669999999999999999974 678999999998742     234677899888777 999999999998654     


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                       ...|+|||||.|+|.+.+...        ++...+   ...++.||.|||..+++|||||    ++..++
T Consensus        93 ~~~~~lv~e~~~~~l~~~~~~~--------l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~  155 (353)
T cd07850          93 FQDVYLVMELMDANLCQVIQMD--------LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC  155 (353)
T ss_pred             cCcEEEEEeccCCCHHHHHhhc--------CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCC
Confidence             357999999999999888642        333333   3344489999999999888887    555544

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.42  E-value=7.1e-13  Score=139.74  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=97.9

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD----QDF  541 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~  541 (613)
                      +..|+..+.||+|+||.||++. ..+|+.||+|++...     ..+.+.+|+.+|.++ +||||+++++++..    ...
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~~   82 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHF-KHDNIIAIRDILRPPGADFKD   82 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhc-CCCCccCHHHhccccCCCCce
Confidence            3558999999999999999974 677999999998753     234677899988887 89999999998763    347


Q ss_pred             EEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          542 VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       542 ~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .++||||+.|+|.+++...      ..+++..+..++.   .||.|||..+++|||||    ++..++
T Consensus        83 ~~lv~e~~~~~l~~~~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~  144 (334)
T cd07855          83 VYVVMDLMESDLHHIIHSD------QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDC  144 (334)
T ss_pred             EEEEEehhhhhHHHHhccC------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC
Confidence            8999999999999998743      2355555544443   89999999999888887    555554

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=1.1e-13  Score=138.11  Aligned_cols=124  Identities=21%  Similarity=0.152  Sum_probs=102.6

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|.||+|.++ .+.+++.+|+|+++++      ....-..|-++|... +||.+..|.-.|+.++.+|+|
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~-~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNC-RHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhc-cCcHHHHhhhhhccCceEEEE
Confidence            45889999999999999997 5889999999999873      222445778888888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |||+. |.|+-+|.+.+      .+.++....+-   +.||.|||+++|+.||+|    +|++|||
T Consensus       247 MeyanGGeLf~HLsrer------~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGH  306 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER------VFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGH  306 (516)
T ss_pred             EEEccCceEeeehhhhh------cccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCc
Confidence            99999 69999888654      34444333332   279999999999999999    7889886

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.42  E-value=1.8e-12  Score=133.65  Aligned_cols=121  Identities=23%  Similarity=0.262  Sum_probs=94.8

Q ss_pred             EEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |.+.+.||+|+||.||++..      .++..+|+|.+....   .+.+.+|++++.++ +||||+++++++...+..++|
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   85 (291)
T cd05094           7 IVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL-QHEHIVKFYGVCGDGDPLIMV   85 (291)
T ss_pred             eEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcC-CCCCcceEEEEEccCCceEEE
Confidence            78889999999999999742      345679999987633   34788999999887 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++..+...          .....+++.....++.   .++.|||..+++|||||
T Consensus        86 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlk  150 (291)
T cd05094          86 FEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLA  150 (291)
T ss_pred             EecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccC
Confidence            99999 6999999864310          0112344444444443   89999999999887776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.42  E-value=1.7e-12  Score=136.93  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=93.5

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-e-------CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-Y-------EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~-------~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      ..|.+.+.||+|+||.||++.. .       .+..||+|.++..    ..+.+.+|++++.++.+||||++++++|...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            3489999999999999999742 1       2236899988752    23478899998887768999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+++|||++ |+|.+++...+..          .....+.......   .++.++.|||..+++|||||
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlk  161 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLA  161 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            9999999999 6999999864210          0112233333333   34489999999998877666

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.42  E-value=1.4e-12  Score=131.05  Aligned_cols=117  Identities=24%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             eeEeecCceEEEEEEee-C---CcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          479 KEIAKGSNGTVVLEGNY-E---GRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~-~---g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.||+|+||.||++... .   +..||+|.+....    .+.+.+|++.+..+ +|+||+++++++......+++|||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKL-GHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhc-CCCChheeeeeecCCCceEEEEEecc
Confidence            46899999999998543 3   7889999998632    45788999999887 89999999999999999999999998


Q ss_pred             -ccHHHHHHHhcCC---CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGS---FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~---~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++......   .....+++.....++.   .++.+||+.+++|||||
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~  132 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLA  132 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccC
Confidence             6999999864210   0024455555555554   89999999999887776

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.42  E-value=1.9e-12  Score=130.45  Aligned_cols=119  Identities=24%  Similarity=0.281  Sum_probs=91.7

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEEEEEe
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD--QDFVYLSL  546 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~~LV~  546 (613)
                      |++.+.||+|+||.||++ ...+++.||+|++...     ..+.+.+|++++.++ +||||+++++++..  ....+++|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILREL-KHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhc-CCCccceeeeeeecCCCCEEEEEe
Confidence            678899999999999997 4678899999998742     234678899988887 99999999998864  34689999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHh-----cCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLL-----PVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh-----~~~iiHrDlK  596 (613)
                      ||++ |+|.+++...+.  ....++...+..++.   .++.+||     ..+++|+|||
T Consensus        81 e~~~~~~L~~~l~~~~~--~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~  137 (265)
T cd08217          81 EYCEGGDLAQLIQKCKK--ERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK  137 (265)
T ss_pred             hhccCCCHHHHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCC
Confidence            9999 699999986431  233455555444433   8999999     6667666555

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.42  E-value=2.7e-12  Score=129.22  Aligned_cols=117  Identities=22%  Similarity=0.273  Sum_probs=92.0

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-DFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~~~LV~E  547 (613)
                      |++.+.||+|+||.||++. ..+++.||+|++...     ..+.+.+|++++.++ +|+|++++++.+... ...|++||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQL-KHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhC-CCCCeeeeeeeecCCCCEEEEEec
Confidence            7889999999999999974 567889999998752     234678899888777 999999999987654 46899999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ ++|.+++....    ...+++..+..++.   .++.+||+.+++|||||
T Consensus        81 ~~~~~~l~~~l~~~~----~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~  129 (257)
T cd08223          81 FCEGGDLYHKLKEQK----GKLLPENQVVEWFVQIAMALQYLHEKHILHRDLK  129 (257)
T ss_pred             ccCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            999 69999998642    22345555544443   89999999998776665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.42  E-value=8.2e-13  Score=135.37  Aligned_cols=116  Identities=22%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|+..+.||+|+||.||++. ..+++.||+|++...     ..+.+.+|++++..+ +||||+++++++...+..++|||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQL-RHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhc-CCcchhhHHHhcccCCeEEEEEe
Confidence            48889999999999999975 456899999988652     234678999988887 99999999999999999999999


Q ss_pred             CCCc-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++| +|.++....      ..+....+..++.   .++.|||+.+++|+|++
T Consensus        81 ~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~  127 (286)
T cd07846          81 FVDHTVLDDLEKYP------NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIK  127 (286)
T ss_pred             cCCccHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9995 777665532      2244555544443   89999999999888877

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.42  E-value=1.9e-12  Score=132.73  Aligned_cols=117  Identities=20%  Similarity=0.168  Sum_probs=92.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|+..+.||+|+||.||++. ..+++.||+|+++.     ...+.+.+|++++.++ +|+||+++++++...+..+++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQL-RHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhc-CCCCeeehhheEEECCEEEEEEe
Confidence            48899999999999999974 55788999998874     2345788999999888 89999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+++++.+.+...     ...+....+..+   ++.++.|||..+++|||++
T Consensus        81 ~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~  127 (288)
T cd07833          81 YVERTLLELLEAS-----PGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIK  127 (288)
T ss_pred             cCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9996444444332     122444444444   3389999999999888887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.42  E-value=7.9e-14  Score=153.10  Aligned_cols=118  Identities=20%  Similarity=0.155  Sum_probs=92.4

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ....++||+|+||+||++. ..+|+    +||+|.+..    +..+++..|+-+|.++ +||||+||+++|.... +.||
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masl-dHpnl~RLLgvc~~s~-~qlv  775 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASL-DHPNLLRLLGVCMLST-LQLV  775 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcC-CCchHHHHhhhcccch-HHHH
Confidence            4557899999999999974 44443    699998875    3456899999888887 9999999999998776 8899


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||+ |+|.++++.++..... ...+.|...+. .||.|||.+..+||||-
T Consensus       776 tq~mP~G~LlDyvr~hr~~igs-q~lLnw~~QIA-kgM~YLe~qrlVHrdLa  825 (1177)
T KOG1025|consen  776 TQLMPLGCLLDYVREHRDNIGS-QDLLNWCYQIA-KGMKYLEEQRLVHRDLA  825 (1177)
T ss_pred             HHhcccchHHHHHHHhhccccH-HHHHHHHHHHH-HHHHHHHhcchhhhhhh
Confidence            99999 8999999987643222 12234433333 89999999999888874

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.42  E-value=2.6e-12  Score=130.54  Aligned_cols=116  Identities=24%  Similarity=0.194  Sum_probs=92.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFV  542 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~  542 (613)
                      .|...+.||+|+||.||++. ..+++.||+|++...        ..+.+.+|++++.++ +||||+++++++...  ...
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNL-QHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHc-CCCCeeeEEEEEEcCCCCEE
Confidence            37888999999999999974 577899999988642        123678899999888 999999999998763  578


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||++ ++|.+++....      .++......   .++.+|.+||+.+++|||+|
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~  133 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG------ALTESVTRKYTRQILEGMSYLHSNMIVHRDIK  133 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            99999999 59999997532      233443333   33489999999999988877

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.42  E-value=2.6e-12  Score=132.27  Aligned_cols=120  Identities=18%  Similarity=0.225  Sum_probs=93.8

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV~  546 (613)
                      .|...+.||.|++|.||++. ..+++.+|+|.+...    ..+.+.+|++++.++ +||||++++++|...  ..+++||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSC-KSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhC-CCCCeeeeeeEEEccCCCeEEEEE
Confidence            37889999999999999985 467889999998853    334788999999877 999999999998654  3789999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.+++.....  ....+++..+.   ..++.++.|||..+++|+|++
T Consensus        81 e~~~~~~L~~~l~~~~~--~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~  132 (287)
T cd06621          81 EYCEGGSLDSIYKKVKK--RGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIK  132 (287)
T ss_pred             EecCCCCHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            9999 599998875321  22234444333   333489999999999888877

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=2.3e-12  Score=130.77  Aligned_cols=128  Identities=23%  Similarity=0.272  Sum_probs=100.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------EEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQD------FVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------~~~  543 (613)
                      +.|++.+.||+|+||.||++. ..+++.+|+|.+...  ..+.+.+|++++.++.+|+||+++++++....      ..+
T Consensus         6 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~   85 (275)
T cd06608           6 GIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLW   85 (275)
T ss_pred             hheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEE
Confidence            458999999999999999975 457889999998863  34578899999988767999999999997654      489


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +||||++ ++|.++++....  ....+....+..++   +.++.|||+.+++|+||+    ++..++
T Consensus        86 lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~  150 (275)
T cd06608          86 LVMELCGGGSVTDLVKGLRK--KGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNA  150 (275)
T ss_pred             EEEEcCCCCcHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCC
Confidence            9999999 599999876421  12345555554443   389999999999888877    555444

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.42  E-value=1.7e-12  Score=137.45  Aligned_cols=124  Identities=18%  Similarity=0.149  Sum_probs=97.5

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      +.+.|...+.||+|+||.||++. ..+++.||||++...     ..+.+.+|+++|.++ +||||+++++++....    
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-KHENVIGLLDVFTPDLSLDR   91 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc-CCCCccceeeeecCCccccc
Confidence            45569999999999999999974 678999999998642     223678999999888 9999999999987653    


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                        ..++||||+.++|.+++...       .+++..+..++.   .++.|||+.+|+|||||    ++..++
T Consensus        92 ~~~~~lv~e~~~~~l~~~~~~~-------~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~  155 (343)
T cd07880          92 FHDFYLVMPFMGTDLGKLMKHE-------KLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDC  155 (343)
T ss_pred             cceEEEEEecCCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC
Confidence              46899999978998888632       345555555443   89999999999888877    555444

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.42  E-value=1.7e-12  Score=130.57  Aligned_cols=117  Identities=22%  Similarity=0.307  Sum_probs=96.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .|...+.||+|+||.||++. ..+++.+|+|.+.... .+.+.+|++++.++ +||||+++++++......|+++||++ 
T Consensus         4 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~l~~e~~~~   82 (256)
T cd06612           4 VFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQC-DSPYIVKYYGSYFKNTDLWIVMEYCGA   82 (256)
T ss_pred             cchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhC-CCCcEeeeeeeeecCCcEEEEEecCCC
Confidence            48888999999999999975 4458899999988633 56899999999888 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|.+++....     ..++...+..++.   .++.|||..+++|||++
T Consensus        83 ~~L~~~l~~~~-----~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~  126 (256)
T cd06612          83 GSVSDIMKITN-----KTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIK  126 (256)
T ss_pred             CcHHHHHHhCc-----cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            59999997532     2344444444443   89999999999888876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.41  E-value=1.3e-12  Score=135.17  Aligned_cols=116  Identities=22%  Similarity=0.224  Sum_probs=94.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|...+.||+|+||.||++. ..++..||+|.+...   ..+.+.+|+.++.++ +||||+++++++...+..|+|+||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l-~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMREN-KHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhc-CCCCeeehhheeeeCCcEEEEEec
Confidence            348889999999999999974 567889999998642   334788999888777 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|.+++...       .++...   +...++.++.+||+.+++|||+|
T Consensus        98 ~~~~~L~~~~~~~-------~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~  142 (293)
T cd06647          98 LAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLHSNQVIHRDIK  142 (293)
T ss_pred             CCCCcHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCC
Confidence            99 6999998753       123333   33344489999999999888877

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.41  E-value=1.4e-12  Score=138.10  Aligned_cols=113  Identities=15%  Similarity=0.008  Sum_probs=83.5

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-ee-CCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCccee-EEEEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NY-EGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVR-WYGVES  537 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~-~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~-l~g~~~  537 (613)
                      ..+...|...+.||+|+||+||+|. .. +++.||||++...        ..+.+.+|+++|.++ +|+|++. ++.   
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L-~h~~iv~~l~~---   89 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTV-RGIGVVPQLLA---   89 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhc-cCCCCCcEEEE---
Confidence            3444569999999999999999985 33 6788899986532        134689999999888 9999985 443   


Q ss_pred             eCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeecc-c
Q 007199          538 DQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDI-E  596 (613)
Q Consensus       538 ~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDl-K  596 (613)
                       .+..|||||||+| +|.. +..      ..  ... ....++.++.|||+.+|+|||| |
T Consensus        90 -~~~~~LVmE~~~G~~L~~-~~~------~~--~~~-~~~~i~~aL~~lH~~gIiHrDL~K  139 (365)
T PRK09188         90 -TGKDGLVRGWTEGVPLHL-ARP------HG--DPA-WFRSAHRALRDLHRAGITHNDLAK  139 (365)
T ss_pred             -cCCcEEEEEccCCCCHHH-hCc------cc--hHH-HHHHHHHHHHHHHHCCCeeCCCCC
Confidence             2468999999995 8862 211      11  122 3445559999999999998888 6

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.41  E-value=2.3e-12  Score=130.24  Aligned_cols=115  Identities=25%  Similarity=0.275  Sum_probs=94.9

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|+||.||++. ..+++.||+|.++..     ..+.+.+|++++.++ +|+||+++++++...+..++|+||
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELL-KHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhC-CCCChhheeeeEecCCEEEEEEec
Confidence            7788999999999999975 567899999998863     334788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++....      ...+....+   .++.++.+||+.+++|+|||
T Consensus        81 ~~~~~L~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~  126 (264)
T cd06626          81 CSGGTLEELLEHGR------ILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIK  126 (264)
T ss_pred             CCCCcHHHHHhhcC------CCChHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            99 69999997532      233334333   33489999999999888887

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.41  E-value=2.1e-12  Score=132.18  Aligned_cols=111  Identities=21%  Similarity=0.113  Sum_probs=89.5

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||+||++. ..+|+.+|+|.+...      ....+.+|+++|..+ +||||+++++.+...+..|+||||++ |+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKV-SSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhC-CCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            6899999999974 667899999998752      233567899888777 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++....    ...+++..+..+   ++.++.|||..+++|||||
T Consensus        80 L~~~l~~~~----~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~  122 (277)
T cd05577          80 LKYHIYNVG----EPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLK  122 (277)
T ss_pred             HHHHHHHcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            999998642    123455544433   3489999999999888877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.41  E-value=1.4e-12  Score=133.47  Aligned_cols=117  Identities=21%  Similarity=0.192  Sum_probs=95.3

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|++|.||++. ..+|..||+|++...     ..+.+.+|++.+.++ +||||+++++++...+..|++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKEL-NHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhc-CCCCccCHhheeccCCeEEEEEec
Confidence            4567889999999999974 568999999998742     234688899999887 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++|.+++....    ...+.+.....++.   .+|.|||+.+++|||++
T Consensus        80 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~  126 (283)
T cd07835          80 LDLDLKKYMDSSP----LTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLK  126 (283)
T ss_pred             cCcCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC
Confidence            9989999997642    12355555554433   89999999999888777

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.41  E-value=1.2e-12  Score=132.18  Aligned_cols=109  Identities=23%  Similarity=0.225  Sum_probs=86.6

Q ss_pred             eEeecCceEEEEEE---eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          480 EIAKGSNGTVVLEG---NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~---~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +||+|+||.||++.   ..++..+|+|+++...     .+++.+|+.++..+ +||||+++++++. .+..++||||++ 
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~-~~~~~lv~e~~~~   79 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQL-DNPYIVRMIGICE-AESWMLVMELAEL   79 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhC-CCCCcceEEEEEc-CCCcEEEEecCCC
Confidence            68999999999973   3567889999987532     34788999888777 9999999999885 456789999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++....      .+++.+..+++.   .++.+||..+++|||||
T Consensus        80 ~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlk  122 (257)
T cd05116          80 GPLNKFLQKNK------HVTEKNITELVHQVSMGMKYLEETNFVHRDLA  122 (257)
T ss_pred             CcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCEeecccc
Confidence            79999997532      345555555444   89999999998887776

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.41  E-value=2.3e-12  Score=136.69  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=93.3

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-----  539 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----  539 (613)
                      +.+.|...+.||+|+||.||++. ..+++.||+|++...     ..+.+.+|++++.++ +||||+++++++...     
T Consensus        15 ~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l-~h~~iv~~~~~~~~~~~~~~   93 (345)
T cd07877          15 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM-KHENVIGLLDVFTPARSLEE   93 (345)
T ss_pred             ccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHc-CCCcccceeeeeeecccccc
Confidence            44669999999999999999974 578899999998752     234677899988888 999999999988643     


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       ...|+++|++.++|.++++..       .+.+..+..++   +.|+.|||+.+++|||||
T Consensus        94 ~~~~~lv~~~~~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk  147 (345)
T cd07877          94 FNDVYLVTHLMGADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIHSADIIHRDLK  147 (345)
T ss_pred             cccEEEEehhcccCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence             347899999888998888642       24444444433   389999999999988887

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.41  E-value=2.2e-12  Score=129.53  Aligned_cols=112  Identities=23%  Similarity=0.180  Sum_probs=89.7

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccH
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSL  553 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL  553 (613)
                      ++||+|+||.||++....++.||+|++...    ..+.+.+|++++.++ +|+||+++++++...+..++||||++ ++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQY-DHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            368999999999986555999999998863    234788999988777 99999999999999999999999999 599


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          554 NDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       554 ~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++....     ..+.......+   +..++.+||+.+++|||+|
T Consensus        80 ~~~l~~~~-----~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~  120 (251)
T cd05041          80 LTFLRKKK-----NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLA  120 (251)
T ss_pred             HHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcC
Confidence            99997532     23344433333   3389999999998877665

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.41  E-value=1.9e-12  Score=131.65  Aligned_cols=116  Identities=21%  Similarity=0.164  Sum_probs=89.6

Q ss_pred             eEEEeeeEeecCceEEEEEEeeC----CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYE----GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~----g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .|.+.+.||+|+||.||++...+    ...||+|.....    ..+.+.+|++++.++ +||||+++++++.. +..++|
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           7 DITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQF-DHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhC-CCCchhceeEEEcC-CCcEEE
Confidence            37889999999999999975322    346999988753    234788999988888 99999999998875 567899


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....     ..+.......+   ++.++.|||..+++|||||
T Consensus        85 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~  134 (270)
T cd05056          85 MELAPLGELRSYLQVNK-----YSLDLASLILYSYQLSTALAYLESKRFVHRDIA  134 (270)
T ss_pred             EEcCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC
Confidence            99999 79999997632     23444444433   3389999999988776666

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.41  E-value=4e-12  Score=128.34  Aligned_cols=116  Identities=21%  Similarity=0.192  Sum_probs=96.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|++.+.||+|++|.||++. ..+++.||||++....    .+.+.+|++.+.++ +|+||+++++++...+..++||||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC-ESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhc-CCCCeeeEEEEEccCCeEEEEEEe
Confidence            37888999999999999985 5579999999988643    45789999999888 899999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhc-CCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~-~~iiHrDlK  596 (613)
                      ++ ++|.+++...      ..+++.....++   +.++.+||. .+++|||++
T Consensus        81 ~~~~~L~~~l~~~------~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~  127 (264)
T cd06623          81 MDGGSLADLLKKV------GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIK  127 (264)
T ss_pred             cCCCcHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCC
Confidence            99 6999999853      234444444443   389999999 999887776

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.41  E-value=2.5e-14  Score=152.64  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .+.+...||.|+||+||++. ..++...|-|.|..   +..+++.-||++|..+ .||+||+|++.|+..+.++|+.|||
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~C-dHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAEC-DHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcC-CChHHHHHHHHHhccCceEEEEeec
Confidence            36677789999999999974 66677788898875   3455889999999888 8999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      + |-.+..+-..     ...+.++++.   ++++.||.|||+++|||||||
T Consensus       112 ~GGAVDaimlEL-----~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLK  157 (1187)
T KOG0579|consen  112 GGGAVDAIMLEL-----GRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLK  157 (1187)
T ss_pred             CCchHhHHHHHh-----ccccchHHHHHHHHHHHHHHHHHhhcchhhhhcc
Confidence            9 5776666543     2345555554   444499999999999999998

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.40  E-value=3.8e-12  Score=129.20  Aligned_cols=122  Identities=24%  Similarity=0.236  Sum_probs=95.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFV  542 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~  542 (613)
                      .|.+.+.||+|+||.||++. ..+++.||+|.+...        ....+.+|++++.++ +|+||+++++++...  ...
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l-~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNL-RHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHc-CCCCcceEEEEEEcCCCCEE
Confidence            48899999999999999974 577999999987531        223688899999888 999999999998764  468


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +++|||++ ++|.+++....      .+.+.++.++   ++.++.+||+.+++|||+|    +++.++
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~------~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~  143 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG------ALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAG  143 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC
Confidence            89999999 59999987532      2344444433   3389999999999988887    555444

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.40  E-value=7.8e-14  Score=159.98  Aligned_cols=125  Identities=28%  Similarity=0.283  Sum_probs=102.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +++....||.|.||.||.|. ..+|...|||.++-+     ..+.+.+|+.+|..+ +|||+|++||.....+.++|.||
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~l-nHpNlV~YyGVEvHRekv~IFME 1314 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGL-NHPNLVRYYGVEVHREKVYIFME 1314 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhc-cCccccccCceeecHHHHHHHHH
Confidence            36677889999999999974 889999999987752     233678899888777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||. |+|.+++...+   .....-..|...++..|+.|||..+|+|||+|    ||.-+|
T Consensus      1315 yC~~GsLa~ll~~gr---i~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g 1371 (1509)
T KOG4645|consen 1315 YCEGGSLASLLEHGR---IEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNG 1371 (1509)
T ss_pred             HhccCcHHHHHHhcc---hhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCC
Confidence            999 79999998653   23333345566666699999999999999888    555555

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.40  E-value=1.1e-12  Score=134.07  Aligned_cols=115  Identities=22%  Similarity=0.163  Sum_probs=92.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|+..+.||+|+||.||++. ..++..||+|.+....    .+.+.+|++++.++ +||||+++++++.+.+..++||||
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQC-DSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCEEEEEEec
Confidence            36778889999999999974 5678899999987532    34688899988877 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|.+++...       .+.......+   ++.++.++|+.+++|+||+
T Consensus        84 ~~~~~L~~~i~~~-------~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~  128 (277)
T cd06640          84 LGGGSALDLLRAG-------PFDEFQIATMLKEILKGLDYLHSEKKIHRDIK  128 (277)
T ss_pred             CCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCC
Confidence            99 5999998642       2333333333   3389999999988777665

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.40  E-value=4.3e-14  Score=137.70  Aligned_cols=125  Identities=24%  Similarity=0.326  Sum_probs=98.3

Q ss_pred             EEEeeeEeecCceEEEE-EEeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk-~~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      ++-...||.|+||+|+| .++..|+.+|||+|+..    ...++..|.+..++.-+.||||++||.+..++..+|.||+|
T Consensus        66 Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELM  145 (361)
T KOG1006|consen   66 LQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELM  145 (361)
T ss_pred             HHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHH
Confidence            55667899999999999 57899999999999963    23478888888888779999999999999999999999999


Q ss_pred             CccHHHH---HHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          550 TCSLNDL---IYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       550 ~GsL~~~---L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      .-||..+   +..-    ....+++..+..+..   .||.||-.      .+|++|||.|||||||
T Consensus       146 d~SlDklYk~vy~v----q~~~ipE~Ilg~ItvatV~AL~yLK~------~lkiIHRDvKPSNILl  201 (361)
T KOG1006|consen  146 DISLDKLYKRVYSV----QKSRIPENILGHITVATVDALDYLKE------ELKIIHRDVKPSNILL  201 (361)
T ss_pred             hhhHHHHHHHHHHH----HhccCcHhhhhheeeeehhHHHHHHH------HhhhhhccCChhheEE
Confidence            9655444   3332    345566666655544   89999865      4566777788999887

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.40  E-value=1.2e-12  Score=132.88  Aligned_cols=116  Identities=22%  Similarity=0.135  Sum_probs=88.7

Q ss_pred             eEeecCceEEEEEEee-------CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          480 EIAKGSNGTVVLEGNY-------EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~~-------~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .||+|+||.||++...       .++.+|+|.+...    ....+.+|++++..+ +||||+++++++...+..+++|||
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNF-NHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhc-CCCCeeeEeeeecCCCCeEEEEec
Confidence            6899999999997422       2257999988653    344788999998877 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCC-ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSF-EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~-~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|.++++...... ....+.+..+..++.   .++.|||+.+++|+|+|
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~  133 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLA  133 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99 69999998643111 112244444444333   89999999998887777

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.40  E-value=1.8e-12  Score=136.81  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=94.1

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----C
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-----D  540 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----~  540 (613)
                      .+.|...+.||+|+||+||++. ..+++.||||.+...     ....+.+|+.++..+ +|+||+++++++...     .
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ni~~~~~~~~~~~~~~~~   82 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHL-DHENVIAIKDIMPPPHREAFN   82 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhc-CCCCccchHHheecccccccC
Confidence            3458999999999999999974 678999999998752     233677899988877 999999999988654     3


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|++|||+.++|.+++...      ..+.+..+..++.   .+|.|||+.+++|||||
T Consensus        83 ~~~lv~e~~~~~L~~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlk  135 (337)
T cd07858          83 DVYIVYELMDTDLHQIIRSS------QTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLK  135 (337)
T ss_pred             cEEEEEeCCCCCHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence            58999999999999988743      2355555554443   89999999999887766

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.40  E-value=2.3e-12  Score=134.61  Aligned_cols=121  Identities=23%  Similarity=0.260  Sum_probs=95.8

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +..+.|...+.||+|+||+||++. ..+++.||+|++...      ..+.+.+|++++..+ +|||++++++++.+.+..
T Consensus        18 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~   96 (313)
T cd06633          18 DPEEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQL-KHPNTIEYKGCYLKEHTA   96 (313)
T ss_pred             CHHHHhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhC-CCCCCccEEEEEEeCCEE
Confidence            334447778889999999999974 567899999998742      123678899988887 999999999999999999


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+||||+.|+|.+++....     ..++...+..+   +..++.|||..+++|||+|
T Consensus        97 ~lv~e~~~~~l~~~l~~~~-----~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~  148 (313)
T cd06633          97 WLVMEYCLGSASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK  148 (313)
T ss_pred             EEEEecCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9999999999988887532     23444444443   3389999999999887766

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.40  E-value=2.1e-12  Score=131.68  Aligned_cols=118  Identities=20%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             eeEeecCceEEEEEEe-eCCc--EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          479 KEIAKGSNGTVVLEGN-YEGR--SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~-~~g~--~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      ++||+|+||.||++.. .++.  .+|+|.+...    ..+.+.+|++++.++.+||||+++++++...+..+++|||++ 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            3689999999999853 4454  4788888742    234788999999888789999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCC----------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSF----------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~----------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.++++..+...          ....++......++.   .|+.|||+.+++|||||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dik  139 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA  139 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc
Confidence            79999998643100          112345555554444   89999999988877666

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.40  E-value=1.6e-12  Score=133.23  Aligned_cols=116  Identities=18%  Similarity=0.071  Sum_probs=86.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .|+..+.||+|+||+||++. ..+++    .+|+|.+...    ...++..|+..+.++ +||||+++++++. ....++
T Consensus         8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l-~h~~iv~~~~~~~-~~~~~~   85 (279)
T cd05111           8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSL-DHAYIVRLLGICP-GASLQL   85 (279)
T ss_pred             hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcC-CCCCcceEEEEEC-CCccEE
Confidence            37888999999999999975 44555    4778877642    223667777777666 9999999999875 456788


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||++ |+|.++++...     ..+++.....++   ..++.|||+.+++|||||
T Consensus        86 i~e~~~~gsL~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlk  136 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHR-----DSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLA  136 (279)
T ss_pred             EEEeCCCCcHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCEeccccC
Confidence            999999 79999998642     234444433333   389999999998877766

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.40  E-value=3.1e-12  Score=130.79  Aligned_cols=122  Identities=25%  Similarity=0.258  Sum_probs=97.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEEe
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLSL  546 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV~  546 (613)
                      |.+.+.||+|+||.||++. ..+++.+|+|++...     ....+.+|++++.++ +|||++++++++...  +..++||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL-RHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhc-cCCCeeeheeeEecCCCCcEEEEe
Confidence            4677899999999999985 556889999999864     234678899989877 899999999999988  8999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||++++|.+++...     ...+++..+..++.   .|+.+||..+++|+|||    ++..++
T Consensus        80 e~~~~~l~~~~~~~-----~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~  137 (287)
T cd07840          80 EYMDHDLTGLLDSP-----EVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDG  137 (287)
T ss_pred             ccccccHHHHHhcc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCC
Confidence            99999999988753     12445555444443   89999999999888777    554444

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.40  E-value=2.7e-12  Score=124.20  Aligned_cols=184  Identities=16%  Similarity=0.079  Sum_probs=147.0

Q ss_pred             chhHHHHhhcCCCCCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEE
Q 007199           29 NRYVSEIYNSLLPPPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFH  108 (613)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~  108 (613)
                      +-.+.++-...+..++-+.+|.|++|...|.||.++-+||+..|.|.+-+.|....+.+  .+. .+++.++.||++|++
T Consensus        44 ~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d--~~~-glIycgshd~~~yal  120 (354)
T KOG4649|consen   44 NLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD--FDG-GLIYCGSHDGNFYAL  120 (354)
T ss_pred             cEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc--CCC-ceEEEecCCCcEEEe
Confidence            33344444444555555689999999999999999999999999999988887764442  222 466667789999999


Q ss_pred             ecCCCceeeecccHHHHhhhCceeec-CCcEEEEeecceEEEEECCCC--cEEEEEecCCCCCCCCCcCCCCCccccCCC
Q 007199          109 SKRFGKMKKLSSSAEEYIRRMPYISK-DGGVTLGAMKTSVFLVDVKSG--RVVDNYVLDFSASTPGFQSDENKHVVPVDG  185 (613)
Q Consensus       109 ~~~~G~l~~~~~~~~~~v~~sP~~~~-dg~v~~Gs~~~~~~~vD~~tG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (613)
                      |+++-.- .|+.+.+.-+-.||++.. |+-+|+.+..+.+.++.++++  ...|.+.-.+++.++|+        |    
T Consensus       121 D~~~~~c-VykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~spl--------c----  187 (354)
T KOG4649|consen  121 DPKTYGC-VYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPL--------C----  187 (354)
T ss_pred             cccccce-EEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCce--------e----
Confidence            9988666 888999999999999986 889999999999999999999  99999998888765553        1    


Q ss_pred             cccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEeceeeeeecccccCCCc
Q 007199          186 YEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSF  245 (613)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~a~~~~~~~~~~~  245 (613)
                                    ....+.|+.-|+.|.++| .+|+.+|  .++.=++-++.|-.+.|+
T Consensus       188 --------------v~~sv~i~~VdG~l~~f~-~sG~qvw--r~~t~GpIf~~Pc~s~Ps  230 (354)
T KOG4649|consen  188 --------------VGSSVIITTVDGVLTSFD-ESGRQVW--RPATKGPIFMEPCESRPS  230 (354)
T ss_pred             --------------ccceEEEEEeccEEEEEc-CCCcEEE--eecCCCceecccccCCCc
Confidence                          134789999999999999 6899999  555556666666554333

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.39  E-value=1.7e-12  Score=132.36  Aligned_cols=121  Identities=24%  Similarity=0.207  Sum_probs=97.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +|+..+.||.|+||.||++. ..+++.||+|.+...    ..+.+.+|++++..+ +|+||+++++++......|+|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQC-RSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHc-CCCCeeeeeEEEEECCeEEEEEEe
Confidence            36778899999999999975 567899999998753    234688999988887 899999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++ |+|.++++..       .++...+..++.   .++.+||..+++|||++    ++..++
T Consensus        81 ~~~~~L~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~  135 (274)
T cd06609          81 CGGGSCLDLLKPG-------KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEG  135 (274)
T ss_pred             eCCCcHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC
Confidence            99 6999999753       334444444433   89999999999888777    555443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.39  E-value=3.1e-13  Score=146.21  Aligned_cols=117  Identities=23%  Similarity=0.257  Sum_probs=94.1

Q ss_pred             eEEEeeeEeecCceEEEEEE--eeCCc--EEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG--NYEGR--SVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~--~~~g~--~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .....++||+|+||.|+++.  ...|.  .||||+++.    ...++|.+|+.+|.++ +|||++||||...+ ..+.||
T Consensus       111 ~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L-~H~hliRLyGvVl~-qp~mMV  188 (1039)
T KOG0199|consen  111 QIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKL-QHPHLIRLYGVVLD-QPAMMV  188 (1039)
T ss_pred             HHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhc-cCcceeEEeeeecc-chhhHH
Confidence            36678899999999999974  34444  599999986    2456999999999888 99999999999988 788999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+++ |||.+.|+..    ....+......   .++..||.||..++.||||+-
T Consensus       189 ~ELaplGSLldrLrka----~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLA  239 (1039)
T KOG0199|consen  189 FELAPLGSLLDRLRKA----KKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLA  239 (1039)
T ss_pred             hhhcccchHHHHHhhc----cccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            99999 8999999872    22333333333   333389999999999999986

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.39  E-value=1.7e-12  Score=131.32  Aligned_cols=116  Identities=18%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |+..+.||+|+||.||++. ..+++.+|+|++...    ..+.+.+|++++.++ +||||+++++.+...+..++++||+
T Consensus         3 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           3 LEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC-NSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             chHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHC-CCCchhhhheeeecCCEEEEEEEec
Confidence            6777899999999999975 567899999998863    234688999999887 8999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      + ++|.+++....     ..+++..+.+++.   .++.+||+ .+++|+|||
T Consensus        82 ~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~  128 (265)
T cd06605          82 DGGSLDKILKEVQ-----GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVK  128 (265)
T ss_pred             CCCcHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCC
Confidence            9 69999998642     3445555444433   89999999 898888877

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.38  E-value=3.6e-13  Score=145.16  Aligned_cols=120  Identities=21%  Similarity=0.227  Sum_probs=93.5

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-------THHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~  542 (613)
                      ....+.++||+|+|-+||+| +..+|..||.-.++.       ...+.|..|+++|+.+ +|||||++|.+|.+..  .+
T Consensus        40 Ry~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL-~H~NIirfy~SW~d~~n~~i  118 (632)
T KOG0584|consen   40 RYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSL-KHPNIIRFYDSWVDTDNKTI  118 (632)
T ss_pred             ceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccC-CCCceeeeeeheecCCCcee
Confidence            33678899999999999998 578888888654442       2346899999988777 9999999999999766  48


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcC--Cceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPV--MENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~--~iiHrDlK  596 (613)
                      .+|+|+|. |+|..|++++++  -.-.....|...++ .||+|||++  .|||||||
T Consensus       119 n~iTEL~TSGtLr~Y~kk~~~--vn~kaik~W~RQIL-kGL~yLHs~~PPIIHRDLK  172 (632)
T KOG0584|consen  119 NFITELFTSGTLREYRKKHRR--VNIKAIKSWCRQIL-KGLVYLHSQDPPIIHRDLK  172 (632)
T ss_pred             eeeeecccCCcHHHHHHHhcc--CCHHHHHHHHHHHH-HHhhhhhcCCCCccccccc
Confidence            89999999 999999998863  12223345544444 899999985  57777765

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.38  E-value=3.4e-12  Score=128.19  Aligned_cols=116  Identities=20%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             EEeeeEeecCceEEEEEEe-eC----CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          476 VFNKEIAKGSNGTVVLEGN-YE----GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~-~~----g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      ++.+.||+|+||.||++.. ..    +..||+|.+...    ..+.+..|++.+..+ +|+||+++++++...+..+++|
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKL-DHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhc-CCCchheEEEEEcCCCeeEEEE
Confidence            4567899999999999753 33    388999999863    345788999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ ++|.+++....    ...+++.....++.   .++.+||+.+++|||+|
T Consensus        81 e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~  130 (258)
T smart00219       81 EYMEGGDLLDYLRKNR----PKELSLSDLLSFALQIARGMEYLESKNFIHRDLA  130 (258)
T ss_pred             eccCCCCHHHHHHhhh----hccCCHHHHHHHHHHHHHHHHHHhcCCeeecccc
Confidence            9999 59999998642    11145555544443   89999999999888876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.38  E-value=5.8e-12  Score=129.40  Aligned_cols=126  Identities=23%  Similarity=0.253  Sum_probs=101.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      ..+.|...+.||+|+||.||++. ..++..+|+|.+....  .+.+.+|++.+..+ +|+||+++++++...+..++++|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDC-KHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHC-CCCCeeEEEEEEEECCEEEEEEe
Confidence            34558888999999999999975 4478899999998654  56788999988877 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |++ ++|.+++....     ..++......++   +.++.+||+.+++|+|+|    +++.++
T Consensus        96 ~~~~~~L~~~l~~~~-----~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~  153 (286)
T cd06614          96 YMDGGSLTDIITQNF-----VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDG  153 (286)
T ss_pred             ccCCCcHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCC
Confidence            999 69999998642     234444444433   389999999999888877    555444

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.38  E-value=2.5e-12  Score=131.28  Aligned_cols=115  Identities=22%  Similarity=0.169  Sum_probs=92.7

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcC--CCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASD--QHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~--~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |+..+.||+|+||.||++. ..+++.||+|.++..    ..+.+.+|++++.++.  .|||++++++++......++|||
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e   82 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIME   82 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEe
Confidence            6777899999999999975 578899999998752    3347888998887772  49999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ ++|.++++..       .++...+..+   ++.++.+||..+++|+||+
T Consensus        83 ~~~~~~L~~~~~~~-------~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~  128 (277)
T cd06917          83 YAEGGSVRTLMKAG-------PIAEKYISVIIREVLVALKYIHKVGVIHRDIK  128 (277)
T ss_pred             cCCCCcHHHHHHcc-------CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcC
Confidence            999 5999988642       3444444333   3489999999999888776

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.38  E-value=6e-13  Score=136.07  Aligned_cols=115  Identities=23%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|+..+.||+|+||.||++. ..+++.||+|.+...    ..+.+.+|++++.++ +||||+++++++...+..|+||||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQC-DSPYITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcC-CCCccHhhhcccccCCceEEEEEc
Confidence            36667789999999999974 567889999998742    234688999988877 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ |+|.+++...       .+....+..+   +..++.|||..+++|+||+
T Consensus        84 ~~~~~L~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~  128 (277)
T cd06642          84 LGGGSALDLLKPG-------PLEETYIATILREILKGLDYLHSERKIHRDIK  128 (277)
T ss_pred             cCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHhcCCeeccCCC
Confidence            99 6999988642       2333443333   3389999999998776665

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.38  E-value=1.2e-12  Score=135.80  Aligned_cols=120  Identities=23%  Similarity=0.245  Sum_probs=94.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      |.....||+|+||.||++. ..+++.||+|.+..   ...+.+.+|+.++..+ +||||+++++++...+..+++|||++
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l-~hp~i~~~~~~~~~~~~~~iv~e~~~  101 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY-QHQNVVEMYKSYLVGEELWVLMEFLQ  101 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhC-CCCchhhhhhheeeCCeEEEEEecCC
Confidence            4455679999999999974 56789999999874   2345788999888777 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                       ++|.+++...       .+.+..+..   .++.++.+||+.+++|||||    +++.++
T Consensus       102 ~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~  154 (297)
T cd06659         102 GGALTDIVSQT-------RLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDG  154 (297)
T ss_pred             CCCHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCC
Confidence             6998877542       234444433   33489999999999888877    555544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>PRK10345 hypothetical protein; Provisional

Probab=99.38  E-value=3.9e-12  Score=124.94  Aligned_cols=112  Identities=14%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             EEeeeEeecCceEEEEEEeeCCcEEEEEEeecc---chHHHHHHHHHHHhcC----CCCcceeEEEEEEeCC---EEE-E
Q 007199          476 VFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT---HHDVALKEIQNLIASD----QHPNIVRWYGVESDQD---FVY-L  544 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~----~HpnIV~l~g~~~~~~---~~~-L  544 (613)
                      ...+.||+|+||.||. +..++.. +||++...   ..+.+.+|+.++..+.    .||||+++++++.++.   .++ +
T Consensus         5 ~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~   82 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDV   82 (210)
T ss_pred             CCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEE
Confidence            3457899999999996 6555555 69988753   4567999999998772    4799999999999874   444 7


Q ss_pred             EecC--CC-ccHHHHHHHhcCCCccccCCHH--HHHHHHHHHHHHHhcCCceeeccc
Q 007199          545 SLER--CT-CSLNDLIYVLSGSFEEQLNAKE--QDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~--~~-GsL~~~L~~~~~~~~~~~~~~~--~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+||  +. |+|.+++...       .+.+.  ++.+++...+.|||+.+|+|||||
T Consensus        83 I~e~~G~~~~tL~~~l~~~-------~~~e~~~~~~~~L~~l~~yLh~~~IvhrDlK  132 (210)
T PRK10345         83 IADFDGKPSITLTEFAEQC-------RYEEDVAQLRQLLKKLKRYLLDNRIVTMELK  132 (210)
T ss_pred             EecCCCCcchhHHHHHHcc-------cccHhHHHHHHHHHHHHHHHHHCCEeecCCC
Confidence            8999  55 6999999752       12222  233333344499999999999988

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.37  E-value=4e-12  Score=128.65  Aligned_cols=109  Identities=21%  Similarity=0.245  Sum_probs=88.9

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||.||++. ..+++.+|+|.+.+.      ..+.+.+|++++..+ +||||+++++.+.+.+..+++|||++ |+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEEC-NHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhC-CCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            6899999999975 456899999998752      234688999988777 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++....      .++...+..+   ++.+++|||+.+++|+|+|
T Consensus        80 L~~~l~~~~------~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~  120 (262)
T cd05572          80 LWTILRDRG------LFDEYTARFYIACVVLAFEYLHNRGIIYRDLK  120 (262)
T ss_pred             HHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            999998642      2344444333   3489999999999888877

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.37  E-value=8.7e-12  Score=124.83  Aligned_cols=115  Identities=28%  Similarity=0.285  Sum_probs=95.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEEe
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLSL  546 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV~  546 (613)
                      |...+.||+|++|.||++. ..+++.|++|.+....     .+.+.+|++.+.++ +||||+++++.+...  +..++++
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL-QHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHc-CCCCEeeEEEEEecCCCCeEEEEE
Confidence            6778899999999999985 4578999999988643     55889999999888 999999999999988  8999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ ++|.+++....      .+.......++   ..++.|||+.+++|+|++
T Consensus        81 e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~  128 (260)
T cd06606          81 EYVSGGSLSSLLKKFG------KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIK  128 (260)
T ss_pred             EecCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9998 69999998642      34444444433   389999999999888876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.37  E-value=8e-13  Score=141.46  Aligned_cols=120  Identities=20%  Similarity=0.210  Sum_probs=92.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE---eeCC--cEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG---NYEG--RSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~---~~~g--~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.....++||.|.||.||++.   ...|  -.||||.-+.    ...+.|..|..+|+.+ +|||||+|+|.|.. .+++
T Consensus       389 e~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnf-dHphIikLIGv~~e-~P~W  466 (974)
T KOG4257|consen  389 ELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNF-DHPHIIKLIGVCVE-QPMW  466 (974)
T ss_pred             hhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhC-CCcchhheeeeeec-ccee
Confidence            446677889999999999973   1123  3589998775    4566899999888777 99999999999974 5899


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+++ |.|..||+.++..  .....+.....+++.+|.|||+.+.+||||-
T Consensus       467 ivmEL~~~GELr~yLq~nk~s--L~l~tL~ly~~Qi~talaYLeSkrfVHRDIA  518 (974)
T KOG4257|consen  467 IVMELAPLGELREYLQQNKDS--LPLRTLTLYCYQICTALAYLESKRFVHRDIA  518 (974)
T ss_pred             EEEecccchhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHhhchhhhhhh
Confidence            9999999 9999999985421  1112222333334489999999999999986

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.37  E-value=5.1e-12  Score=129.95  Aligned_cols=122  Identities=20%  Similarity=0.131  Sum_probs=96.4

Q ss_pred             EEEeeeEeecCceEEEEEE----eeCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG----NYEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~----~~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      |++.+.||+|+||.||++.    ..+++.||||.+++.       ..+.+.+|++++.++.+||||+++++.+...+..+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            6788999999999999964    346788999998752       22367889999988867999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +||||++ |+|.+++....      .+.+..+..   .++.+|.+||..+++|||+|    ++..++
T Consensus        82 lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~  142 (288)
T cd05583          82 LILDYVNGGELFTHLYQRE------HFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEG  142 (288)
T ss_pred             EEEecCCCCcHHHHHhhcC------CcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC
Confidence            9999999 69999987532      334444433   33489999999999888887    555544

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=9.5e-12  Score=124.66  Aligned_cols=115  Identities=23%  Similarity=0.232  Sum_probs=95.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |...+.||+|++|.||++. ..+++.+|+|.+....     .+.+.+|++++.++ +|||++++++++...+..+++|||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNL-KHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhC-CCCCccEEEEEEEeCCEEEEEEec
Confidence            6788999999999999974 5678899999988643     34788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++...      ..+++.....++   +.++.+||+.+++|||+|
T Consensus        81 ~~~~~L~~~~~~~------~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  126 (254)
T cd06627          81 AENGSLRQIIKKF------GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIK  126 (254)
T ss_pred             CCCCcHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            99 5999999753      234444444443   389999999999888877

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.37  E-value=1.5e-12  Score=134.61  Aligned_cols=115  Identities=21%  Similarity=0.221  Sum_probs=92.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .|.....||+|+||.||++. ..++..||||.+...   ..+.+.+|+..+..+ +|+||+++++.+...+..++||||+
T Consensus        23 ~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~ii~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          23 YLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDY-HHENVVDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             HHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhC-CCCcHHHHHHheecCCeEEEEEeCC
Confidence            35556789999999999974 567889999998752   334688999888777 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + ++|.+++...       .+.+.....++.   .++.|||+.+++|||||
T Consensus       102 ~~~~L~~~~~~~-------~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk  145 (292)
T cd06658         102 EGGALTDIVTHT-------RMNEEQIATVCLSVLRALSYLHNQGVIHRDIK  145 (292)
T ss_pred             CCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCC
Confidence            9 5999888532       234444444433   89999999999888887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.37  E-value=3.9e-12  Score=128.64  Aligned_cols=112  Identities=19%  Similarity=0.110  Sum_probs=83.7

Q ss_pred             eeEeecCceEEEEEEee----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEEEEEecCC
Q 007199          479 KEIAKGSNGTVVLEGNY----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESD-QDFVYLSLERC  549 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~~LV~E~~  549 (613)
                      +.||+|+||.||++...    ++..||+|++...    ..+.+.+|+.++..+ +||||+++++++.. ++..+++|||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDF-SHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccC-CCCCcceEEEEeecCCCCcEEEEecC
Confidence            46899999999997532    3457999988642    234778899888776 99999999998764 55689999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      . |+|.++++...     .........   ..++.|+.|||..+++|||||
T Consensus        80 ~~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  125 (262)
T cd05058          80 KHGDLRNFIRSET-----HNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLA  125 (262)
T ss_pred             CCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCccccccC
Confidence            9 79999997632     122222222   334489999999998887776

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.37  E-value=6.4e-12  Score=129.01  Aligned_cols=111  Identities=18%  Similarity=0.085  Sum_probs=83.8

Q ss_pred             eEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHH--hcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          480 EIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLI--ASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~--~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      .||+|+||.||++. ..+++.+|+|.+.+..      ...+.+|...+.  ...+||||+.+++++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            48999999999974 5678999999887521      123344443222  22479999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++..+.      .+++..+..++.   .|+.|||+.+++|||||
T Consensus        81 ~~~L~~~i~~~~------~l~~~~~~~i~~qi~~al~~lH~~~ivH~dik  124 (279)
T cd05633          81 GGDLHYHLSQHG------VFSEKEMRFYATEIILGLEHMHNRFVVYRDLK  124 (279)
T ss_pred             CCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCC
Confidence             69999987532      355555555443   89999999999887777

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.37  E-value=4.9e-12  Score=131.14  Aligned_cols=124  Identities=23%  Similarity=0.210  Sum_probs=97.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD------  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------  540 (613)
                      +.|.+.+.||+|+||.||++. ..+++.+|+|++...     ....+.+|++++.++ +||||+++++++....      
T Consensus         8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL-KHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhc-CCCCccchhhheeccccccccc
Confidence            459999999999999999974 667899999988752     123578899988877 9999999999875433      


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                        .+++||||+.++|.+.+...     ...+++.++..++.   .+|.|||+.+++|||+|    ++..++
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~-----~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~  152 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENP-----SVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQG  152 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhcc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC
Confidence              57999999999888888642     23456666555544   89999999999888887    555544

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.36  E-value=4.7e-12  Score=127.62  Aligned_cols=112  Identities=24%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             eeEeecCceEEEEEEee--CCc--EEEEEEeeccch----HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          479 KEIAKGSNGTVVLEGNY--EGR--SVAVKRLVKTHH----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~--~g~--~VAVK~l~~~~~----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.||+|+||.||++...  .++  .||+|.+.....    +.+.+|++.+.++ +||||+++++.+.. ...+++|||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSL-DHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhc-CCCCccceeEEEcC-CeEEEEEEecC
Confidence            46899999999997532  333  699999987433    4788999999888 99999999999988 89999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ...++...+..++.   .++.+||..+++|||||
T Consensus        79 ~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~  124 (257)
T cd05040          79 LGSLLDRLRKDA----LGHFLISTLCDYAVQIANGMRYLESKRFIHRDLA  124 (257)
T ss_pred             CCcHHHHHHhcc----cccCcHHHHHHHHHHHHHHHHHHHhCCccccccC
Confidence             79999998642    13345555544333   89999999988776665

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.36  E-value=2.1e-12  Score=132.08  Aligned_cols=118  Identities=21%  Similarity=0.272  Sum_probs=93.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |.+.+.||+|+||+||++. ..+++.||+|++....    .....+|+..+.++.+||||+++++++...+..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            4677899999999999985 4568899999987632    2245678888888833999999999999999999999999


Q ss_pred             CccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 TCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .|+|.+++....    ...+....+..++.   .++.|||+.+++|+|||
T Consensus        81 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~  126 (283)
T cd07830          81 EGNLYQLMKDRK----GKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLK  126 (283)
T ss_pred             CCCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            889999987642    23445555555444   89999999998887776

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.36  E-value=4.1e-12  Score=134.48  Aligned_cols=117  Identities=24%  Similarity=0.234  Sum_probs=94.0

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--------
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--------  539 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--------  539 (613)
                      +.+|...+.||+|+||.||++. ..+|+.||+|.+...   ..+.+.+|++++.++ +||||+++++++...        
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRL-DHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhc-CCCcchhhHhhhccccccccccc
Confidence            3569999999999999999974 677899999998753   344688999999887 999999999876654        


Q ss_pred             ------CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 ------DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ------~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                            ...|+||||++++|.+++...       .+++..+..++.   .|+.|||+.+++|||||
T Consensus        83 ~~~~~~~~~~lv~e~~~~~L~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~givH~dik  141 (342)
T cd07854          83 GSLTELNSVYIVQEYMETDLANVLEQG-------PLSEEHARLFMYQLLRGLKYIHSANVLHRDLK  141 (342)
T ss_pred             ccccccceEEEEeecccccHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence                  368999999999998888642       244555544433   89999999999888887

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.36  E-value=1.8e-12  Score=144.35  Aligned_cols=130  Identities=14%  Similarity=0.077  Sum_probs=90.4

Q ss_pred             cCceEEEeeeEeecCceEEEEEEe--eCCcEEEEE------------------Eeec--cchHHHHHHHHHHHhcCCCCc
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEGN--YEGRSVAVK------------------RLVK--THHDVALKEIQNLIASDQHPN  528 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~~--~~g~~VAVK------------------~l~~--~~~~~~~~Ei~~L~~l~~Hpn  528 (613)
                      +.+.|.+.+.||+|+||+||++..  ..+...+.|                  .+..  .....+.+|+++|.++ +|||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l-~Hpn  224 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRL-NHEN  224 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhC-CCCC
Confidence            335699999999999999998642  222222222                  1111  1223678999999888 9999


Q ss_pred             ceeEEEEEEeCCEEEEEecCCCccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc----eecCC
Q 007199          529 IVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE----LWKAN  601 (613)
Q Consensus       529 IV~l~g~~~~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK----llh~d  601 (613)
                      |+++++++...+..|+++|++.++|.+++...... .........   +...++.||.|||+.+|+|||||    |+..+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~-~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~  303 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYDFDLYSFMYDEAFD-WKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCD  303 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccccCHHHHHhhcccc-ccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCC
Confidence            99999999999999999999999999888653210 011111222   23334489999999999888877    55544


Q ss_pred             C
Q 007199          602 G  602 (613)
Q Consensus       602 g  602 (613)
                      +
T Consensus       304 ~  304 (501)
T PHA03210        304 G  304 (501)
T ss_pred             C
Confidence            4

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.36  E-value=5.1e-12  Score=128.57  Aligned_cols=121  Identities=17%  Similarity=0.115  Sum_probs=89.4

Q ss_pred             EEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----
Q 007199          475 VVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----  540 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----  540 (613)
                      |.+.+.||+|+||.||++..    .+++.||||++...     ..+.+.+|+++|.++ +||||+++++++...+     
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEF-DHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcC-CCCCcceEEEEEccCCCCCcc
Confidence            45678899999999999742    34688999998753     234688999988777 9999999999887543     


Q ss_pred             -EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 -FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 -~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       ..++++||+. |+|.+++...+.......++......++.   .++.|||+.+++|||||
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dik  140 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLA  140 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccc
Confidence             3478999999 79998886432111122344444444443   89999999998887777

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.36  E-value=2.8e-12  Score=130.61  Aligned_cols=123  Identities=23%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|...+.||+|+||.||++. ..++..||+|.+...      ..+.+.+|++++.++.+||||+++++++...+..+++|
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            48889999999999999975 568999999988752      23467889988888733999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||++ |+|.+++...+      .++...+..+   +..++.+||+.+++|+|+|    ++..++
T Consensus        82 e~~~~~~L~~~l~~~~------~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~  139 (280)
T cd05581          82 EYAPNGELLQYIRKYG------SLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDM  139 (280)
T ss_pred             cCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC
Confidence            9997 69999998642      3444444443   3489999999999888887    555554

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.36  E-value=2.9e-12  Score=131.34  Aligned_cols=121  Identities=20%  Similarity=0.197  Sum_probs=91.1

Q ss_pred             EEEeeeEeecCceEEEEEEee------CCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGNY------EGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~------~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      |.+.+.||+|+||.||++...      .+..||+|++....    .+.+.+|+.++..+ +||||+++++++...+..++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l-~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRL-QHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcC-CCCCcCeEEEEEcCCCceEE
Confidence            667788999999999997532      35789999998532    24678898877666 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||++ ++|.+++......          .....++...+.+   .+..|+.|+|+.+++|||||
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlk  151 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLA  151 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence            999999 6999998642100          0112244443333   33489999999999887776

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.36  E-value=5e-12  Score=131.30  Aligned_cols=116  Identities=22%  Similarity=0.141  Sum_probs=88.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .|+..+.||+|+||.||++. ..+|.    .||+|.+....    ..++.+|+.++.++ +||||+++++++... ..++
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l-~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           8 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASM-DHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCcccEEEEEcCC-Ccee
Confidence            37888899999999999974 44554    47899887532    23678899888777 999999999998754 5679


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||++ |+|.+++..+.     ..++...+..   .++.++.|||..+++|||||
T Consensus        86 v~e~~~~g~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dik  136 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHK-----DNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLA  136 (303)
T ss_pred             eehhcCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHhhcCeeccccc
Confidence            999999 79999997642     2234444333   33389999999998887776

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.36  E-value=6e-12  Score=127.06  Aligned_cols=110  Identities=25%  Similarity=0.206  Sum_probs=85.4

Q ss_pred             eeEeecCceEEEEEE-ee---CCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          479 KEIAKGSNGTVVLEG-NY---EGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~-~~---~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      ++||+|+||.||++. ..   .+..+|+|.+....    .+.+.+|++++..+ .||||+++++++. .+..++||||++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-~~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQL-DHPCIVRLIGVCK-GEPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhc-CCCCeeeEEEEEc-CCceEEEEEeCC
Confidence            469999999999974 22   23689999988633    34788999999887 9999999999876 456899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....      .+++..+..++.   .++.+||..+++|||||
T Consensus        79 ~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~  122 (257)
T cd05060          79 LGPLLKYLKKRR------EIPVSDLKELAHQVAMGMAYLESKHFVHRDLA  122 (257)
T ss_pred             CCcHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcc
Confidence             69999998642      344444444433   89999999988877766

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.36  E-value=2.1e-12  Score=136.26  Aligned_cols=126  Identities=20%  Similarity=0.211  Sum_probs=95.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--E
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD--F  541 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~  541 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+++.+|||++...     ....+.+|++++.++.+||||+++++++...+  .
T Consensus         4 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~   83 (337)
T cd07852           4 HILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKD   83 (337)
T ss_pred             hhhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCce
Confidence            344558889999999999999975 557889999988642     23467789988876669999999999987543  6


Q ss_pred             EEEEecCCCccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          542 VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       542 ~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .|+||||++++|.+++...       .+....   +...++.+|.|||..+++|||||    ++..++
T Consensus        84 ~~lv~e~~~~~L~~~~~~~-------~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~  144 (337)
T cd07852          84 IYLVFEYMETDLHAVIRAN-------ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDC  144 (337)
T ss_pred             EEEEecccccCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC
Confidence            8999999999999988642       223332   23333489999999999888887    555544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.35  E-value=7.2e-12  Score=127.76  Aligned_cols=108  Identities=14%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccHHHHHH
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSLNDLIY  558 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL~~~L~  558 (613)
                      ||+|+||.||++. ..+++.+|+|.+..........++  ...+.+||||+++++++...+..|+||||++ |+|.+++.
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~--~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~  101 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMV--HQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLK  101 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHH--HHHhhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHH
Confidence            6999999999974 678899999998864333222222  2222379999999999999999999999999 69999997


Q ss_pred             HhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          559 VLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ...      .+++..+..++.   .++.+||+.+++|||||
T Consensus       102 ~~~------~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  136 (267)
T PHA03390        102 KEG------KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIK  136 (267)
T ss_pred             hcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            532      445555555444   89999999999888877

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.35  E-value=7.2e-12  Score=129.52  Aligned_cols=119  Identities=19%  Similarity=0.230  Sum_probs=93.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||+++..    ....+.+|+..+.+...||||+++++++......|++||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            348889999999999999975 445899999999853    223567788777777579999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      |++++|.+++....     ..++......++.   .++.|||+ .+++||||+
T Consensus        95 ~~~~~l~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~  142 (296)
T cd06618          95 LMSTCLDKLLKRIQ-----GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVK  142 (296)
T ss_pred             ccCcCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCc
Confidence            99988888776532     2444444444433   89999997 588887777

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.35  E-value=1.9e-12  Score=125.47  Aligned_cols=110  Identities=16%  Similarity=-0.004  Sum_probs=73.8

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccch------------H-----------------HHHHHHHHHHhcCCCCc
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHH------------D-----------------VALKEIQNLIASDQHPN  528 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~------------~-----------------~~~~Ei~~L~~l~~Hpn  528 (613)
                      ...||+|+||.||+|...+|+.||||+++....            .                 ...+|+++|.++ .|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRL-VTAG   80 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHH-HHCC
Confidence            357999999999998656899999999975311            1                 123488888888 7776


Q ss_pred             ceeEEEEEEeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHH-hcCCceeeccc
Q 007199          529 IVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRL-LPVMENTKDIE  596 (613)
Q Consensus       529 IV~l~g~~~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~L-h~~~iiHrDlK  596 (613)
                      +.........  ..+|||||++| +|...+...      ..++...+..++   ..++.++ |..+|+|||+|
T Consensus        81 v~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~------~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlk  145 (190)
T cd05147          81 IPCPEPILLK--SHVLVMEFIGDDGWAAPRLKD------APLSESKARELYLQVIQIMRILYQDCRLVHADLS  145 (190)
T ss_pred             CCCCcEEEec--CCEEEEEEeCCCCCcchhhhc------CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            6444333222  23899999996 555443221      234444444443   3899998 68888877766

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.35  E-value=3.3e-12  Score=133.02  Aligned_cols=113  Identities=15%  Similarity=0.005  Sum_probs=87.2

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-c
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-C  551 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-G  551 (613)
                      .+.+|.|+++.||+ ...+++.||||++...     ..+.+.+|++++..+ +|+||+++++++...+..+++|||++ |
T Consensus         7 ~~~~~~~~~v~~~~-~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l-~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           7 GKCFEDLMIVHLAK-HKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQL-QHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hHhhcCCceEEEEE-ecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhc-CCcchhhhhheeecCCeEEEEEeccCCC
Confidence            34445555555555 3458999999998753     334788999999887 99999999999999999999999999 7


Q ss_pred             cHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          552 SLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       552 sL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|.+++....    ...+++.++..++   +.||.|||+.+|+|||||
T Consensus        85 ~l~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk  128 (314)
T cd08216          85 SCEDLLKTHF----PEGLPELAIAFILKDVLNALDYIHSKGFIHRSVK  128 (314)
T ss_pred             CHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9999998642    2234555554443   389999999999887777

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.35  E-value=8e-12  Score=126.95  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=92.2

Q ss_pred             EEEeeeEeecCceEEEEEEee--CCcEEEEEEeecc-------------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC
Q 007199          475 VVFNKEIAKGSNGTVVLEGNY--EGRSVAVKRLVKT-------------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ  539 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~--~g~~VAVK~l~~~-------------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~  539 (613)
                      |++.+.||+|+||.||++...  .++.+|+|.+...             ...++.+|+.++.+..+||||+++++++...
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   81 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEN   81 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccC
Confidence            677889999999999997533  4788999988631             1235678888887766999999999999999


Q ss_pred             CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          540 DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      +..+++|||++ ++|.+++.....  ....++......++.   .++.+||. .+++|+|||
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~  141 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFNSLKE--KKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLT  141 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            99999999999 599998865321  223455555554443   89999996 678887777

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.35  E-value=9e-13  Score=124.34  Aligned_cols=128  Identities=18%  Similarity=0.210  Sum_probs=103.6

Q ss_pred             eEEEeeeEeecCceEEEE-EEeeCCcEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk-~~~~~g~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .+.-...||+|++|.|-+ .+..+|..+|||+++.    +......+|+.+.++...+|.+|++||.+.+...++|.||.
T Consensus        47 ~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~  126 (282)
T KOG0984|consen   47 DLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMEL  126 (282)
T ss_pred             hhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHH
Confidence            356677899999999988 5789999999999985    23447888999888888999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      |.-||..+-++--.  ....+++..+-++.+   .||+|||++      ++++|||.||||||+
T Consensus       127 M~tSldkfy~~v~~--~g~~ipE~vlGkIa~Svv~al~~L~~k------L~vIHRDvKPsNiLI  182 (282)
T KOG0984|consen  127 MDTSLDKFYRKVLK--KGGTIPEDVLGKIAVSVVHALEFLHSK------LSVIHRDVKPSNILI  182 (282)
T ss_pred             hhhhHHHHHHHHHh--cCCcCchHHhhHhHHHHHHHHHHHHHH------hhhhhccCCcceEEE
Confidence            99888776654211  456788888877776   899999885      345666677888887

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.35  E-value=1.1e-11  Score=126.70  Aligned_cols=124  Identities=25%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhc--CCCCcceeEEEEEEeCCE-----
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIAS--DQHPNIVRWYGVESDQDF-----  541 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~~~~~-----  541 (613)
                      |++.+.||+|+||.||++. ..+++.||+|+++..     ....+.+|+.++.++  .+||||+++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            4678899999999999985 456899999999742     123566788777655  369999999999998876     


Q ss_pred             EEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          542 VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       542 ~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .+++|||+.++|.+++....    ...+++..+..++.   .||.+||+.+++|+|+|    ++..++
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~----~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~  144 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCP----KPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDG  144 (287)
T ss_pred             eEEEehhcccCHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCC
Confidence            99999999999999987642    22355555554444   89999999999888887    555543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.34  E-value=1.1e-11  Score=130.58  Aligned_cols=122  Identities=20%  Similarity=0.194  Sum_probs=93.9

Q ss_pred             EEEeeeEeecCceEEEEEE-eeC--CcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC----CEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYE--GRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ----DFV  542 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~--g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~----~~~  542 (613)
                      |.+.+.||+|+||.||++. ..+  +..||+|++...     ..+.+.+|++++.++.+||||+++++++...    ..+
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            7788999999999999975 444  789999998752     2346788999998886799999999876533    468


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+++||+.++|.+++...      ..+++..+..++.   .+|.|||..+++|||||    ++..++
T Consensus        82 ~~~~e~~~~~L~~~l~~~------~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~  142 (332)
T cd07857          82 YLYEELMEADLHQIIRSG------QPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADC  142 (332)
T ss_pred             EEEEecccCCHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCC
Confidence            999999999999998743      2344554444443   89999999999888887    554444

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.34  E-value=4.6e-12  Score=129.39  Aligned_cols=122  Identities=23%  Similarity=0.215  Sum_probs=96.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |...+.||+|++|.||++. ..+++.+|+|++....     ...+.+|++++.++ +|+||+++++++...+..++||||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL-NHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHh-cCCCcchHHHhhccCCCEEEEEec
Confidence            3456789999999999974 5678999999987532     34788899999888 899999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++++|.+++....     ..++...+..+   ++.++.+||..+++|+|||    ++..++
T Consensus        80 ~~~~l~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~  135 (283)
T cd05118          80 MDTDLYKLIKDRQ-----RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEG  135 (283)
T ss_pred             cCCCHHHHHHhhc-----ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCC
Confidence            9999999887632     23444444333   3389999999999888877    555444

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.34  E-value=4.4e-12  Score=133.18  Aligned_cols=121  Identities=22%  Similarity=0.229  Sum_probs=97.2

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~  543 (613)
                      |.+.+.||+|+||.||++. ..++..||+|++...     ..+.+.+|++++..+ +||||+++++++...+     ..|
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL-RHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhc-CCcchhhhhhhhcccCcccccceE
Confidence            7888999999999999985 456899999988763     234788999999888 9999999999998775     789


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++|||++++|.++++..      ..+++..+..+   ++.+|.+||+.+++|||||    +++.++
T Consensus        81 lv~e~~~~~l~~~l~~~------~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~  140 (330)
T cd07834          81 IVTELMETDLHKVIKSP------QPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNC  140 (330)
T ss_pred             EEecchhhhHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC
Confidence            99999999999998743      24455544443   3389999999999888887    555553

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=1.5e-12  Score=138.10  Aligned_cols=118  Identities=18%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      ..|+..+.||+|+.+.||++...+.+.+|+|++..     +..+.+.+|+..|.++..|.+||+|++|...++.+|||||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            44899999999999999998888888899987764     2334799999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHH----HHHHHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSN----LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~----~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |-+-||..+|+...      .....|..+    .++++++++|..+|||.|||
T Consensus       441 ~Gd~DL~kiL~k~~------~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLK  487 (677)
T KOG0596|consen  441 CGDIDLNKILKKKK------SIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLK  487 (677)
T ss_pred             cccccHHHHHHhcc------CCCchHHHHHHHHHHHHHHHHHHHhceeecCCC
Confidence            88899999999743      222223222    23389999999999877765

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.33  E-value=1.9e-11  Score=122.57  Aligned_cols=119  Identities=24%  Similarity=0.257  Sum_probs=96.5

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |...+.||+|+||.||++. ..++..+|+|++...     ..+.+.+|++++..+ +|||++++++.+...+..++++||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL-NHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhc-CCCChhheEEEEecCCEEEEEEEe
Confidence            7788999999999999974 457899999998853     334788999999888 899999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++.....  ....++...+..++.   .++.+||+.+++|+|++
T Consensus        81 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~  130 (258)
T cd08215          81 ADGGDLSQKIKKQKK--EGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIK  130 (258)
T ss_pred             cCCCcHHHHHHHhhc--cCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCC
Confidence            99 599999986421  123455554444444   89999999999888776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.33  E-value=9.1e-12  Score=128.19  Aligned_cols=114  Identities=25%  Similarity=0.255  Sum_probs=91.7

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      |...+.||+|++|.||++. ..+++.+|+|++...   ..+.+.+|+.++..+ +||||+++++++...+..++++||++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~-~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDY-QHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHc-CCCChheEEEEEEcCCeEEEEEeccC
Confidence            5556799999999999974 567899999988642   334678999888777 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                       ++|.+++...       .++...+.   ..++.++.+||+.+++|||||
T Consensus       100 ~~~L~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~  142 (285)
T cd06648         100 GGALTDIVTHT-------RMNEEQIATVCLAVLKALSFLHAQGVIHRDIK  142 (285)
T ss_pred             CCCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence             5999998752       23333333   334489999999999887765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.33  E-value=8.4e-12  Score=130.03  Aligned_cols=116  Identities=22%  Similarity=0.256  Sum_probs=93.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      |...+.||+|+||.||++. ..++..+|+|.+...      ..+.+.+|++++..+ +|+|++++++++...+..++|||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhC-CCCCcccEEEEEEcCCeeEEEEE
Confidence            6677889999999999975 567889999988642      123677899988887 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+.|+|.+++....     ..+....+..++   +.++.|||..+++|||||
T Consensus        96 ~~~~~l~~~~~~~~-----~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~  142 (308)
T cd06634          96 YCLGSASDLLEVHK-----KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK  142 (308)
T ss_pred             ccCCCHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99999988886532     234555554443   389999999998887776

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.1e-12  Score=149.87  Aligned_cols=63  Identities=29%  Similarity=0.403  Sum_probs=53.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVE  536 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~  536 (613)
                      ..|+..++||+|+||.|||++ +.+|+.+|||+|....    .....+|+..|.++ +|||||+++..|
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArL-nHpNVVRYysAW  546 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARL-NHPNVVRYYSAW  546 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhc-CCcceeeeehhh
Confidence            347888999999999999974 8999999999998642    23688999999888 999999999764

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.33  E-value=1.4e-11  Score=126.27  Aligned_cols=111  Identities=18%  Similarity=0.062  Sum_probs=83.2

Q ss_pred             eEeecCceEEEEEE-eeCCcEEEEEEeeccch------HHHHHHHHHHH--hcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          480 EIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHH------DVALKEIQNLI--ASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~------~~~~~Ei~~L~--~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +||+|+||.||++. ..+++.||+|.+.+...      ..+..|...+.  +...||||+++++++...+..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            48999999999974 56789999999875321      12334433222  22489999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++...      ..+++..+..++.   .++.|||+.+++|||+|
T Consensus        81 g~~L~~~l~~~------~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~  124 (278)
T cd05606          81 GGDLHYHLSQH------GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLK  124 (278)
T ss_pred             CCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCC
Confidence             5999888643      2355555544443   89999999999888777

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.32  E-value=7.3e-12  Score=129.55  Aligned_cols=114  Identities=22%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      |.....||+|+||.||++. ..+++.||||.+..   ...+.+.+|+.++..+ +|+||+++++++...+..+++|||++
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~  100 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY-QHENVVEMYNSYLVGDELWVVMEFLE  100 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhc-CCcchhheeeEEEeCCEEEEEEecCC
Confidence            3345689999999999974 56889999998864   2334688999888777 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                       ++|.+++...       .+....+   .+.++.++.|||+.+++|+|+|
T Consensus       101 ~~~L~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~  143 (292)
T cd06657         101 GGALTDIVTHT-------RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIK  143 (292)
T ss_pred             CCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence             5999887532       1233333   3334489999999999887777

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.32  E-value=6e-12  Score=126.81  Aligned_cols=115  Identities=24%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||.||++. ..+|+.+|+|.+...      ..+.+.+|++.+.++ +||||+++++.+......|++|||++ |+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQA-QSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhC-CCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            6899999999975 456999999998753      234788899888887 89999999999999999999999999 59


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc----eecCCC
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |.++++...      .+++..+..+   ++.+|.+||..+++|+||+    ++..++
T Consensus        80 L~~~l~~~~------~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~  130 (265)
T cd05579          80 LASLLENVG------SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNG  130 (265)
T ss_pred             HHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCC
Confidence            999998642      3444444433   3489999999999888877    555444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.32  E-value=1e-11  Score=124.74  Aligned_cols=119  Identities=19%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |++.+.||+|+||.||++ ...+++.+|+|.+...     ....+.+|++++.++ +|+||+++++++......++||||
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASV-NHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhC-CCCCchhhhhhhccCCEEEEEehh
Confidence            778899999999999997 4668899999998752     234677899889888 899999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++ ++|.+++.....  ....+....+..++   ..++.+||+.+++|+|++
T Consensus        81 ~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~  130 (256)
T cd08530          81 APFGDLSKAISKRKK--KRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLK  130 (256)
T ss_pred             cCCCCHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            99 599999876321  12334555444443   389999999999888776

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.31  E-value=8.4e-12  Score=128.21  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |...+.||+|+||.||++ ...+++.+|+|.+...    ....+.+|+.++.++..|+||+++++++...+..+++|||+
T Consensus         6 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~   85 (288)
T cd06616           6 LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELM   85 (288)
T ss_pred             hHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecc
Confidence            556678999999999996 4677899999998753    23468899999988856999999999999999999999999


Q ss_pred             CccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          550 TCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       550 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      .++|.++...... .....+++..+..++.   .+++|||.. +++|||||
T Consensus        86 ~~~l~~l~~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlk  135 (288)
T cd06616          86 DISLDKFYKYVYE-VLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVK  135 (288)
T ss_pred             cCCHHHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCC
Confidence            9766554432100 0123455555555544   899999874 77776665

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=99.31  E-value=1.1e-11  Score=138.29  Aligned_cols=139  Identities=16%  Similarity=0.187  Sum_probs=99.3

Q ss_pred             eCCCCeeeEEeeCCCc--eeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-----------HhhhCc
Q 007199           64 DTKLGKIRWSFGTGRP--IYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-----------YIRRMP  130 (613)
Q Consensus        64 d~~tG~~~W~~~~~~~--i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-----------~v~~sP  130 (613)
                      |..+.++.|+|+++..  +.++   ++-. .+.+|+..+ +|.|||+|..||++ +|.+....           .+...|
T Consensus        43 nv~~L~~~W~~~~g~~~g~~st---Pvv~-~g~vyv~s~-~g~v~AlDa~TGk~-lW~~~~~~~~~~~~~~~~~~~~rg~  116 (527)
T TIGR03075        43 NVKKLQPAWTFSLGKLRGQESQ---PLVV-DGVMYVTTS-YSRVYALDAKTGKE-LWKYDPKLPDDVIPVMCCDVVNRGV  116 (527)
T ss_pred             hhccceEEEEEECCCCCCcccC---CEEE-CCEEEEECC-CCcEEEEECCCCce-eeEecCCCCcccccccccccccccc
Confidence            4557889999998743  3333   2212 224565544 99999999999999 99987642           123456


Q ss_pred             eeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEee-
Q 007199          131 YISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRT-  209 (613)
Q Consensus       131 ~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~-  209 (613)
                      ++. ++.||+|+.++.++|||++||+++|++...+.....+                ....|     ...+++||+|.. 
T Consensus       117 av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~----------------~tssP-----~v~~g~Vivg~~~  174 (527)
T TIGR03075       117 ALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYT----------------ITAAP-----LVVKGKVITGISG  174 (527)
T ss_pred             eEE-CCEEEEEcCCCEEEEEECCCCCEEeeccccccccccc----------------ccCCc-----EEECCEEEEeecc
Confidence            777 8899999999999999999999999997643210000                00011     123668999875 


Q ss_pred             -----eeEEEEEeCCCCceEEEEEec
Q 007199          210 -----DYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       210 -----d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                           ++.|+|+|++||+++|++...
T Consensus       175 ~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       175 GEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             cccCCCcEEEEEECCCCceeEeccCc
Confidence                 689999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.30  E-value=1.1e-11  Score=131.28  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=89.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD------  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------  540 (613)
                      ..|...+.||+|+||.||++. ..+|+.||||++.+.     ....+.+|++++.++ +||||+++++++....      
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHM-QHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhc-CCCCccchhheecccccCCCCc
Confidence            458899999999999999975 567999999998752     223578999988887 9999999999987543      


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..++|+||+.++|..++..        .++...+.   ..++.||.|||+.+++|||||
T Consensus        94 ~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlk  144 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMGH--------PLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLK  144 (342)
T ss_pred             eEEEEecccccCHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            5699999999888766531        23333333   334489999999999888777

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.30  E-value=3.9e-11  Score=119.55  Aligned_cols=116  Identities=28%  Similarity=0.346  Sum_probs=95.6

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      |...+.||+|+||.||++. ..++..+++|++...   ..+.+.+|++.+.++ +|+||+++++++...+..++++||++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKC-KHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhC-CCCCEeEEEEEEecCCeEEEEEecCC
Confidence            6778899999999999975 457899999999864   345889999988877 89999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       ++|.+++....     ..++...+..++   ..++.+||..+++|+|++
T Consensus        81 ~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~  125 (253)
T cd05122          81 GGSLKDLLKSTN-----QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIK  125 (253)
T ss_pred             CCcHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCC
Confidence             69999987642     234455544443   389999999999887776

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.30  E-value=1.2e-11  Score=136.35  Aligned_cols=123  Identities=13%  Similarity=0.108  Sum_probs=82.5

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-----------------eCCcEEEEEEeeccc---hH--------------HHHHHHH
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-----------------YEGRSVAVKRLVKTH---HD--------------VALKEIQ  518 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-----------------~~g~~VAVK~l~~~~---~~--------------~~~~Ei~  518 (613)
                      +.|.+.++||+|+||+||++..                 ..++.||||++....   .+              ....|+.
T Consensus       145 d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~  224 (507)
T PLN03224        145 DDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAY  224 (507)
T ss_pred             cCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHH
Confidence            4599999999999999999732                 345689999987421   11              2334665


Q ss_pred             HHHhcCCCCc-----ceeEEEEEEe--------CCEEEEEecCCC-ccHHHHHHHhcCCC------------------cc
Q 007199          519 NLIASDQHPN-----IVRWYGVESD--------QDFVYLSLERCT-CSLNDLIYVLSGSF------------------EE  566 (613)
Q Consensus       519 ~L~~l~~Hpn-----IV~l~g~~~~--------~~~~~LV~E~~~-GsL~~~L~~~~~~~------------------~~  566 (613)
                      ++.++ +|.+     +++++++|..        .+..+|||||++ |+|.++|+......                  ..
T Consensus       225 ~l~~l-~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        225 MCAKI-KRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHh-hcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            66555 5544     4677777753        357899999999 79999998532110                  00


Q ss_pred             ccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          567 QLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       567 ~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      .......+..++   +.++.|||..+++|||||
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLK  336 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIK  336 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCc
Confidence            111223333333   389999999999888876

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.30  E-value=1.1e-12  Score=135.48  Aligned_cols=127  Identities=22%  Similarity=0.201  Sum_probs=95.3

Q ss_pred             cccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec--cc--------hHHHHHHHHHHHhcCCCCcceeEEEEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK--TH--------HDVALKEIQNLIASDQHPNIVRWYGVES  537 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~--~~--------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~  537 (613)
                      ..+.++|-+..+||+|+|+.||++ .+.+.+.||||+-..  ..        .+...+|.++.+.+ .||.||++|++|.
T Consensus       459 ptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeL-DHpRIVKlYDyfs  537 (775)
T KOG1151|consen  459 PTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKEL-DHPRIVKLYDYFS  537 (775)
T ss_pred             cchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhcc-Ccceeeeeeeeee
Confidence            344466788889999999999998 688899999997542  21        22567888887666 9999999999997


Q ss_pred             -eCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC--CceeeccceecCCCcCcceee
Q 007199          538 -DQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV--MENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       538 -~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~--~iiHrDlKllh~dg~PsniLl  609 (613)
                       +.+.+|-|+|||+| +|+-||+.++      .+++..+..++.   .||.||...  .|||-       |.||-||||
T Consensus       538 lDtdsFCTVLEYceGNDLDFYLKQhk------lmSEKEARSIiMQiVnAL~YLNEikpPIIHY-------DLKPgNILL  603 (775)
T KOG1151|consen  538 LDTDSFCTVLEYCEGNDLDFYLKQHK------LMSEKEARSIIMQIVNALKYLNEIKPPIIHY-------DLKPGNILL  603 (775)
T ss_pred             eccccceeeeeecCCCchhHHHHhhh------hhhHHHHHHHHHHHHHHHHHHhccCCCeeee-------ccCCccEEE
Confidence             45689999999998 9999999764      344555544444   788888653  45555       455666665

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.30  E-value=9.4e-12  Score=126.99  Aligned_cols=116  Identities=21%  Similarity=0.229  Sum_probs=93.8

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      |+..+.||+|.||.||++. ..+++.+|+|.+...     ..+.+.+|++++.++ +|+||+++++++...+..++||||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKEL-KHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhc-CCCCHHHHHhhhhcCCceEEEecC
Confidence            4566789999999999975 556899999998863     224678899888777 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++|.+++....     ..+++....+++.   .++.+||..+++|||++
T Consensus        80 ~~~~l~~~i~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~  125 (282)
T cd07829          80 CDMDLKKYLDKRP-----GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLK  125 (282)
T ss_pred             cCcCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            9999999998642     2344444444433   89999999998887777

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.29  E-value=1.1e-11  Score=131.32  Aligned_cols=124  Identities=18%  Similarity=0.190  Sum_probs=97.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE---
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF---  541 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~---  541 (613)
                      +.+.|...+.||+|+||.||++. ..+++.||||++...     ..+.+.+|+.++.++ +||||+++++++...+.   
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHM-DHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhc-cCCCHHHHHHHhhccccccc
Confidence            44569999999999999999974 567889999988742     234677899988887 99999999998876654   


Q ss_pred             ---EEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          542 ---VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       542 ---~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                         .++|+||+.++|.+++...       .+++..+..++.   .++.+||+.+++|||||    ++..++
T Consensus        92 ~~~~~lv~e~~~~~L~~~~~~~-------~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~  155 (343)
T cd07851          92 FQDVYLVTHLMGADLNNIVKCQ-------KLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDC  155 (343)
T ss_pred             cccEEEEEecCCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC
Confidence               8999999988999998642       345555444443   89999999999888877    555444

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.28  E-value=8.6e-12  Score=126.04  Aligned_cols=119  Identities=20%  Similarity=0.162  Sum_probs=90.4

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec--------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK--------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~--------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |.+.+.||+|+||.||++. ...+..+++|.++.        .....+.+|+.++.++ +||||+++++++.+.+..++|
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKL-DHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhC-CCCcHHHHHHHHhcCCceEEE
Confidence            7888999999999999974 44455566665543        1222567788888777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ ++|.+++.....  ....+++..+..++.   .++.|||+.+++|+|+|
T Consensus        81 ~e~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~  133 (260)
T cd08222          81 TEYCEGRDLDCKLEELKH--TGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLK  133 (260)
T ss_pred             EEeCCCCCHHHHHHHHhh--cccccCHHHHHHHHHHHHHHHHHHHHcCccccCCC
Confidence            99999 599999876421  223455555544443   89999999999888777

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=7.3e-14  Score=135.06  Aligned_cols=124  Identities=19%  Similarity=0.227  Sum_probs=96.7

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-------
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-------  539 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-------  539 (613)
                      ..|.-...||+|.||.|++| ...+|+.||+|++.-+     .-....+|+.+|..+ +|+|++.+++.|...       
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~l-kHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLL-KHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHh-cchhHHHHHHHHhhccCCcccc
Confidence            33666778999999999997 4777888999865432     223678999999777 999999999888642       


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                       ..+||||++|+-+|..+|...     ...+++..+.++.   ..||.|+|+..|+|||+|    |+.+||
T Consensus        96 r~t~ylVf~~cehDLaGlLsn~-----~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dg  161 (376)
T KOG0669|consen   96 RATFYLVFDFCEHDLAGLLSNR-----KVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDG  161 (376)
T ss_pred             cceeeeeHHHhhhhHHHHhcCc-----cccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCc
Confidence             358999999999999999753     2344444444444   499999999999999999    777776

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=1.3e-12  Score=133.82  Aligned_cols=124  Identities=19%  Similarity=0.139  Sum_probs=99.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+..+||+|+||+|.++. +.+.+.+|||++++.      ..+--..|-++|.-..+-|.+++++.+|++-+.+|+||
T Consensus       350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVM  429 (683)
T KOG0696|consen  350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVM  429 (683)
T ss_pred             ccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEE
Confidence            48899999999999999974 667788999999872      33344566666755567889999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      ||+. |+|...|++..      .+.+..+..+..   .||-+||+++||.||||    +|+++||
T Consensus       430 EyvnGGDLMyhiQQ~G------kFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGH  488 (683)
T KOG0696|consen  430 EYVNGGDLMYHIQQVG------KFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGH  488 (683)
T ss_pred             EEecCchhhhHHHHhc------ccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCc
Confidence            9999 69999998754      233333433333   68999999999999999    7777775

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.28  E-value=2.6e-12  Score=125.82  Aligned_cols=123  Identities=19%  Similarity=0.200  Sum_probs=94.2

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      ++....||+|+.|+|+++ .+.+|..+|||.+++..    .+.....++++...-..|.||+.+|||..+..++|.||.|
T Consensus        94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelM  173 (391)
T KOG0983|consen   94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELM  173 (391)
T ss_pred             hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHH
Confidence            566778999999999997 47889999999999743    3356677777766646899999999999999999999999


Q ss_pred             CccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccceecCCCcCcceee
Q 007199          550 TCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       550 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlKllh~dg~PsniLl  609 (613)
                      .-.+..+|+.-     ...+++..+-.+..   .||.||-. ++|||||       .|||||||
T Consensus       174 s~C~ekLlkri-----k~piPE~ilGk~tva~v~AL~YLKeKH~viHRD-------vKPSNILl  225 (391)
T KOG0983|consen  174 STCAEKLLKRI-----KGPIPERILGKMTVAIVKALYYLKEKHGVIHRD-------VKPSNILL  225 (391)
T ss_pred             HHHHHHHHHHh-----cCCchHHhhhhhHHHHHHHHHHHHHhcceeecc-------cCccceEE
Confidence            86666666652     33466655555444   78888854 4666655       56888887

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.27  E-value=4.5e-13  Score=144.65  Aligned_cols=117  Identities=23%  Similarity=0.261  Sum_probs=98.1

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|.+...+|+|.||.|||+ .+.+++..|||.++.+   .....+.|+-++..+ +|||||.++|.|...+..++.|||
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc-~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDC-RHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecC-CCcChHHHHhhhhhhcCcEEEEEe
Confidence            45899999999999999997 5888999999999874   334567888666556 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |. |+|.+.-+.      ...+.+.++...+.   ++++|||+++.+|||||
T Consensus        94 cgggslQdiy~~------TgplselqiayvcRetl~gl~ylhs~gk~hRdiK  139 (829)
T KOG0576|consen   94 CGGGSLQDIYHV------TGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIK  139 (829)
T ss_pred             cCCCcccceeee------cccchhHHHHHHHhhhhccchhhhcCCccccccc
Confidence            99 699887764      33555666655555   89999999999999999

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.26  E-value=2.8e-11  Score=121.07  Aligned_cols=110  Identities=20%  Similarity=0.128  Sum_probs=85.3

Q ss_pred             cCceEEEEE-EeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccHHHHHHHhc
Q 007199          484 GSNGTVVLE-GNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSLNDLIYVLS  561 (613)
Q Consensus       484 G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~  561 (613)
                      |.||.||++ ...+++.+|+|+++...  .+.+|...+... .||||+++++++...+..+++|||++ |+|.+++....
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~--~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~   80 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS--EYSRERLTIIPH-CVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL   80 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh--hhhhHHHHHHhc-CCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc
Confidence            899999997 57889999999998642  334455455455 79999999999999999999999999 69999997542


Q ss_pred             CCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          562 GSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                            .++...+..++.   .++.|||+.+++|||||    ++..++
T Consensus        81 ------~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~  122 (237)
T cd05576          81 ------NIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRG  122 (237)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCC
Confidence                  245555544443   89999999999888877    454444

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.26  E-value=4e-12  Score=126.01  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=94.5

Q ss_pred             cCceEEE-eeeEeecCceEEEEE-EeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEE
Q 007199          471 IGKLVVF-NKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYL  544 (613)
Q Consensus       471 i~~~~~~-~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~L  544 (613)
                      |.+.|.+ .++||-|-.|+|..| ++.+|+.+|+|.+..  .....+|++.....-.|||||+++++|..    ..++++
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D--s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLi  136 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD--SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLI  136 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc--CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEe
Confidence            3334543 478999999999997 689999999998874  34667888766565699999999998874    458999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+|+ |.|+..++.++    ...+.+..   +++.+..|+.|||+.+|.|||+|
T Consensus       137 VmE~meGGeLfsriq~~g----~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlK  188 (400)
T KOG0604|consen  137 VMECMEGGELFSRIQDRG----DQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLK  188 (400)
T ss_pred             eeecccchHHHHHHHHcc----cccchHHHHHHHHHHHHHHHHHHHhcchhhccCC
Confidence            999999 69999999863    33344444   44445589999999999999998

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.25  E-value=2.6e-11  Score=121.42  Aligned_cols=109  Identities=24%  Similarity=0.193  Sum_probs=88.7

Q ss_pred             EeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          481 IAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       481 LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ||+|+||.||++. ..+++.+|+|++...      ..+.+.+|++++.++ +||||+++++.+...+..+++|||++ ++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI-NHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHc-CCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            6899999999974 456899999998863      234788999888777 99999999999999999999999997 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++....      .++......+   +..++.++|..+++|+|+|
T Consensus        80 L~~~l~~~~------~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~  120 (250)
T cd05123          80 LFSHLSKEG------RFSEERARFYAAEIVLALEYLHSLGIIYRDLK  120 (250)
T ss_pred             HHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCceecCCC
Confidence            999998542      3444444443   3389999999999888777

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.25  E-value=2.7e-11  Score=116.87  Aligned_cols=134  Identities=19%  Similarity=0.147  Sum_probs=100.6

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .+...|.+.+.||+|+||.+|.+ .+.+|+.||+|.=.. .....+..|..+...+.....|..++.+..+.++-.||||
T Consensus        12 iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   12 IVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             eeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            44455999999999999999997 588999999997665 3445777888777666445788888889999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceeeecc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVT  612 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLlkl~  612 (613)
                      ++..||.++..-+.+.+..  ...-..+.+++.-++|+|..+.|||||       ||+|+||.|-
T Consensus        92 LLGPsLEdLfnfC~R~ftm--kTvLMLaDQml~RiEyvH~r~fiHRDI-------KPdNFLMGlg  147 (341)
T KOG1163|consen   92 LLGPSLEDLFNFCSRRFTM--KTVLMLADQMLSRIEYVHLRNFIHRDI-------KPDNFLMGLG  147 (341)
T ss_pred             ccCccHHHHHHHHhhhhhH--HhHHHHHHHHHHHHHHHHhhccccccC-------Cccceeeccc
Confidence            9998998888876542221  122233444446788999998876654       6888887653

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.24  E-value=6.9e-12  Score=130.36  Aligned_cols=126  Identities=22%  Similarity=0.146  Sum_probs=104.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|..-++||+|+||.||-|. ..+|+.+|.|++.+.      ......+|-++|.+. +.+.||.+--.|++.+.+|||
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV-~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKV-SSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh-ccCcEEEEeeeecCCCceEEE
Confidence            347888999999999999874 789999999988753      344678898889877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      |..|. |||.-+|...    ....+++..+..+..   .||.|||+..|+.||+|    ||+.+||
T Consensus       264 LtlMNGGDLkfHiyn~----g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~Gh  325 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNH----GNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGH  325 (591)
T ss_pred             EEeecCCceeEEeecc----CCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCC
Confidence            99999 6999998876    335677766666555   89999999999999887    5555554

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.22  E-value=8e-11  Score=114.12  Aligned_cols=109  Identities=18%  Similarity=0.053  Sum_probs=75.0

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccc-----------------------------hHHHHHHHHHHHhcCCCCc
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-----------------------------HDVALKEIQNLIASDQHPN  528 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-----------------------------~~~~~~Ei~~L~~l~~Hpn  528 (613)
                      ...||+|+||+||++...+|+.||||+++...                             ...+.+|.+.+.++ .|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRL-YEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHH-HhCC
Confidence            45799999999999865589999999988531                             11235788888887 8888


Q ss_pred             ceeEEEEEEeCCEEEEEecCCCc-cHHH-HHHHhcCCCccccCCHHH---HHHHHHHHHHHHhc-CCceeeccc
Q 007199          529 IVRWYGVESDQDFVYLSLERCTC-SLND-LIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       529 IV~l~g~~~~~~~~~LV~E~~~G-sL~~-~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~-~~iiHrDlK  596 (613)
                      +.....+....  .+|||||++| ++.. .+...       ..+...   +...++.++.++|. .+++|||+|
T Consensus        81 i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~~-------~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlk  145 (190)
T cd05145          81 VPVPEPILLKK--NVLVMEFIGDDGSPAPRLKDV-------PLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLS  145 (190)
T ss_pred             CCCceEEEecC--CEEEEEEecCCCchhhhhhhc-------cCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence            76555444332  4899999996 4433 34321       222223   33334489999999 999887776

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.21  E-value=9.6e-11  Score=115.92  Aligned_cols=114  Identities=10%  Similarity=-0.068  Sum_probs=87.4

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc--hH----------HHHHHHHHHHhcCCCCcceeEEEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--HD----------VALKEIQNLIASDQHPNIVRWYGVES  537 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~--~~----------~~~~Ei~~L~~l~~HpnIV~l~g~~~  537 (613)
                      .+..+|...++||.|+||.||+... ++..+|+|.++.+.  .+          .+.+|++.+.++ .|++|..+..++.
T Consensus        28 ~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL-~~~GI~~~~d~~~  105 (232)
T PRK10359         28 FLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRV-RSEGLASLNDFYL  105 (232)
T ss_pred             HhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHH-HHCCCCcceEeee
Confidence            4456799999999999999999654 57789999997521  11          267999889888 9999999998876


Q ss_pred             eC--------CEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          538 DQ--------DFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 ~~--------~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..        ...+|+|||++| +|.++..          ..+. ....+..++.++|+.+++|||+|
T Consensus       106 ~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~----------~~~~-~~~~i~~~l~~lH~~gi~H~Dik  162 (232)
T PRK10359        106 LAERKTLRYAHTYIMLIEYIEGVELNDMPE----------ISED-VKAKIKASIESLHQHGMVSGDPH  162 (232)
T ss_pred             ecccccccccCCeEEEEEEECCccHHHhhh----------ccHH-HHHHHHHHHHHHHHcCCccCCCC
Confidence            44        358899999997 8977742          1122 23344589999999999877665

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.20  E-value=1.6e-11  Score=122.94  Aligned_cols=124  Identities=17%  Similarity=0.090  Sum_probs=103.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+..+||+|+|.+|..+. ..+.+.+|+|++++      +..+.++.|-.+..+..+||.+|-++.+|.+...+++|.
T Consensus       251 df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvi  330 (593)
T KOG0695|consen  251 DFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVI  330 (593)
T ss_pred             cceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEE
Confidence            38899999999999999964 78889999999987      344567777777777779999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGH  603 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~  603 (613)
                      ||++ |+|.-++++.+      .++++.+..+..   .+|+|||+.+||.||+|    |++..|+
T Consensus       331 eyv~ggdlmfhmqrqr------klpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaegh  389 (593)
T KOG0695|consen  331 EYVNGGDLMFHMQRQR------KLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGH  389 (593)
T ss_pred             EEecCcceeeehhhhh------cCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCc
Confidence            9999 69988887654      456666555444   79999999999999999    6676664

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.18  E-value=7.3e-12  Score=122.62  Aligned_cols=124  Identities=12%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             cccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEE-EEEeCCEEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYG-VESDQDFVYL  544 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g-~~~~~~~~~L  544 (613)
                      ..+.+.|.+.+.||+|.||.+.++ ++.+.+.+++|.+.+.  ...+|.+|...=-.+..|.||+.-|+ .|+..+.+.+
T Consensus        20 v~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF   99 (378)
T KOG1345|consen   20 VDLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVF   99 (378)
T ss_pred             cchhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEE
Confidence            344456899999999999999997 5888899999999873  44589999855445568999998775 6788889999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||++ |||..-+...    .-.......+...+..|+.|+|+++++|||||
T Consensus       100 ~qE~aP~gdL~snv~~~----GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK  148 (378)
T KOG1345|consen  100 VQEFAPRGDLRSNVEAA----GIGEANTKKVFAQLLSAIEFMHSKNLVHRDLK  148 (378)
T ss_pred             eeccCccchhhhhcCcc----cccHHHHHHHHHHHHHHHHHhhccchhhcccc
Confidence            999999 9998877542    12222334455555599999999999999998

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.17  E-value=2.1e-10  Score=118.73  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-eC---CcEEEEEEeeccch----H----------HHHHHHHHHHhcCCCCcceeEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-YE---GRSVAVKRLVKTHH----D----------VALKEIQNLIASDQHPNIVRWYG  534 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~~---g~~VAVK~l~~~~~----~----------~~~~Ei~~L~~l~~HpnIV~l~g  534 (613)
                      +.|.+.+.||+|+||+||++.. .+   +..+|+|.......    +          ....+...+.. ..|+||+++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~h~~i~~~~~   90 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHN-IDHLGIPKYYG   90 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhcc-CCCCCCCcEEE
Confidence            5699999999999999999753 33   45667775432111    0          11122223333 48999999999


Q ss_pred             EEEeCC----EEEEEecCCCccHHHHHHHhcCCCccccCCHH---HHHHHHHHHHHHHhcCCceeeccc
Q 007199          535 VESDQD----FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKE---QDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       535 ~~~~~~----~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~---~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++....    ..++++|++..++.+.+....      ..++.   .+...++.++.|||+.+++|||||
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiK  153 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKLVENTKEIFKRIK------CKNKKLIKNIMKDMLTTLEYIHEHGISHGDIK  153 (294)
T ss_pred             eeeEecCCceEEEEEEehhccCHHHHHHhhc------cCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            876554    458899988877777776432      12222   334444599999999998887776

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.17  E-value=1.9e-11  Score=126.54  Aligned_cols=122  Identities=21%  Similarity=0.152  Sum_probs=100.8

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-ee---CCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NY---EGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~---~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      ..+.+.|...++||+|.|++||++. ..   ..+.||+|.+.. +......+|++.|..+..+.||+++.+++..++.+.
T Consensus        32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~  111 (418)
T KOG1167|consen   32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVA  111 (418)
T ss_pred             hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeE
Confidence            3444568889999999999999973 22   567899999886 566789999999999999999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++ -+-.++....      ......|..+.+..||.++|..+|||||+|
T Consensus       112 ivlp~~~H~~f~~l~~~l------~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiK  159 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRSL------SLAEIRWYLRNLLKALAHLHKNGIVHRDIK  159 (418)
T ss_pred             EEecccCccCHHHHHhcC------CHHHHHHHHHHHHHHhhhhhccCccccCCC
Confidence            9999999 5777777632      233345666666699999999999988876

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.17  E-value=3.2e-11  Score=123.40  Aligned_cols=129  Identities=18%  Similarity=0.092  Sum_probs=101.4

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCC-C----cceeEEEEEEeCCE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQH-P----NIVRWYGVESDQDF  541 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~H-p----nIV~l~g~~~~~~~  541 (613)
                      .+..+|.+...+|+|.||.|..+ ....+..||||+++.  ..++...-|++.|.++..+ |    -+|.+.++|...++
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            33566999999999999999997 455689999999986  5566788899999888333 2    47888999999999


Q ss_pred             EEEEecCCCccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          542 VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       542 ~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      +|||+|.+.-|++++|+.+    ....++.+.+.   .++++++.+||+.+       |+|.|.||+|||+
T Consensus       166 iCivfellG~S~~dFlk~N----~y~~fpi~~ir~m~~QL~~sv~fLh~~k-------l~HTDLKPENILf  225 (415)
T KOG0671|consen  166 ICIVFELLGLSTFDFLKEN----NYIPFPIDHIRHMGYQLLESVAFLHDLK-------LTHTDLKPENILF  225 (415)
T ss_pred             eEEEEeccChhHHHHhccC----CccccchHHHHHHHHHHHHHHHHHHhcc-------eeecCCChheEEE
Confidence            9999999988999999875    33445555444   44458888887654       5667788999887

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.15  E-value=2.4e-10  Score=111.03  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=78.8

Q ss_pred             EEeeeEeecCceEEEEEEeeCCcEEEEEEeeccch--H-----HHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          476 VFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHH--D-----VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~--~-----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .....|++|+||+||.+.. .++.++.+.+.....  .     .+.+|+++|.++..|+++++++++    +..+++|||
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey   79 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY   79 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence            3567899999999998655 777888777764221  2     578999999998566889999886    446999999


Q ss_pred             CCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +.| +|.+.+..       .  .. .....+..++.++|+.+|+|||||
T Consensus        80 I~G~~L~~~~~~-------~--~~-~~~~qi~~~L~~lH~~GIvHrDL~  118 (218)
T PRK12274         80 LAGAAMYQRPPR-------G--DL-AYFRAARRLLQQLHRCGVAHNDLA  118 (218)
T ss_pred             ecCccHHhhhhh-------h--hH-HHHHHHHHHHHHHHHCcCccCCCC
Confidence            997 77654321       0  11 233444589999999999999994

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.15  E-value=5.4e-10  Score=109.46  Aligned_cols=116  Identities=32%  Similarity=0.412  Sum_probs=93.5

Q ss_pred             EEEeeeEeecCceEEEEEEe-eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~-~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      |...+.||+|++|.||++.. .+++.+|+|.+...    ..+.+.+|++.+.++ +|+|++++++++...+..++++||+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~-~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKL-KHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhC-CCCChhhheeeeecCCceEEEEecc
Confidence            35678899999999999754 45889999999864    456888999999888 9999999999999999999999999


Q ss_pred             Cc-cHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          550 TC-SLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +| +|.+++.....     .+.......++   ..++.+||..+++|+|++
T Consensus        80 ~~~~L~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~  125 (225)
T smart00221       80 EGGDLFDYLRKKGG-----KLSEEEARFYLRQILEALEYLHSLGIVHRDLK  125 (225)
T ss_pred             CCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            95 99999986431     03444433333   388999999998888776

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.15  E-value=1.2e-10  Score=132.46  Aligned_cols=129  Identities=21%  Similarity=0.194  Sum_probs=99.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE---ee-----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG---NY-----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~---~~-----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.+.+.+.||+|.||.|+++.   ..     ....||||.++..    ..+.+..|+++|+.+..|+||+.++|+|...+
T Consensus       296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~  375 (609)
T KOG0200|consen  296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDG  375 (609)
T ss_pred             hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCC
Confidence            335667799999999999973   11     1457999999862    34589999999999999999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhc-C-CCccc--------cCCHHHH---HHHHHHHHHHHhcCCceeeccc----eecCC
Q 007199          541 FVYLSLERCT-CSLNDLIYVLS-G-SFEEQ--------LNAKEQD---SNLLNEVRIRLLPVMENTKDIE----LWKAN  601 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~-~-~~~~~--------~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK----llh~d  601 (613)
                      ..++|+|||. |+|.++|+.++ . .....        .+.....   ..++..||.||++..++|||+-    |++.+
T Consensus       376 ~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~  454 (609)
T KOG0200|consen  376 PLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKN  454 (609)
T ss_pred             ceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCC
Confidence            9999999999 99999999876 0 00111        1333333   3333389999999999999997    55554

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.14  E-value=1.3e-11  Score=118.22  Aligned_cols=118  Identities=14%  Similarity=0.051  Sum_probs=93.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~~LV~E~~  549 (613)
                      +.|++.+.+|+|.|+.|+.+. ..+.+.++||++++-..+...+|+.+|..+..||||++|++...+..  ...||+||+
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v  117 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYV  117 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhh
Confidence            348889999999999999974 67788999999999888899999999999978999999999998765  567999999


Q ss_pred             Cc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          550 TC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .. +...+-..      ..-.........+..||.|+|+++|+|||+|
T Consensus       118 ~n~Dfk~ly~t------l~d~dIryY~~elLkALdyCHS~GImHRDVK  159 (338)
T KOG0668|consen  118 NNTDFKQLYPT------LTDYDIRYYIYELLKALDYCHSMGIMHRDVK  159 (338)
T ss_pred             ccccHHHHhhh------hchhhHHHHHHHHHHHHhHHHhcCcccccCC
Confidence            94 54443332      1122333444444589999999999988876

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.12  E-value=9.4e-10  Score=105.57  Aligned_cols=110  Identities=32%  Similarity=0.430  Sum_probs=89.7

Q ss_pred             EeecCceEEEEEEe-eCCcEEEEEEeeccch----HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-ccHH
Q 007199          481 IAKGSNGTVVLEGN-YEGRSVAVKRLVKTHH----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CSLN  554 (613)
Q Consensus       481 LG~G~fG~Vyk~~~-~~g~~VAVK~l~~~~~----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL~  554 (613)
                      ||+|.+|.||++.. .+++.+++|++.....    +.+.+|++.+..+ +|++|+++++++......+++||+++ ++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL-NHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhc-CCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            68999999999754 3489999999997543    6899999999887 99999999999999999999999999 6999


Q ss_pred             HHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          555 DLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       555 ~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +++....     ...+......++   ..++.+||..+++|+|++
T Consensus        80 ~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~  119 (215)
T cd00180          80 DLLKENE-----GKLSEDEILRILLQILEGLEYLHSNGIIHRDLK  119 (215)
T ss_pred             HHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            9998641     223343333333   389999999999888777

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.08  E-value=7.1e-10  Score=108.85  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeeccc-----------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-----------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-----------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.||+|++|.||++.. .|..|++|......           ...+.+|++++..+ .|++|.....++...+..+++||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRA-RKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCeEEEEeCCCCEEEEE
Confidence            5789999999999754 78889999765421           12577899888887 89999888888888888999999


Q ss_pred             CCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          548 RCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++| +|.+++....      . ....+...+..++.++|..+++|+|++
T Consensus        80 ~~~G~~L~~~~~~~~------~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~  122 (211)
T PRK14879         80 YIEGEPLKDLINSNG------M-EELELSREIGRLVGKLHSAGIIHGDLT  122 (211)
T ss_pred             EeCCcCHHHHHHhcc------H-HHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            9996 9999987531      1 233444444589999999998776665

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.05  E-value=5.4e-10  Score=125.99  Aligned_cols=121  Identities=12%  Similarity=0.038  Sum_probs=75.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeC----CcEEEEEEeeccchHH-HHHHHHHHHhcCCCCcceeEEEE------EEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYE----GRSVAVKRLVKTHHDV-ALKEIQNLIASDQHPNIVRWYGV------ESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~----g~~VAVK~l~~~~~~~-~~~Ei~~L~~l~~HpnIV~l~g~------~~~~~  540 (613)
                      +.|...+.||+|+||.||++. ..+    +..||||++......+ +..|  .+... .+.++..+...      ....+
T Consensus       132 ~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e--~l~~~-~~~~~~~~~~~~~~~~~~~~~~  208 (566)
T PLN03225        132 DDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNE--RVRRA-CPNSCADFVYGFLEPVSSKKED  208 (566)
T ss_pred             CCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHH--HHHhh-chhhHHHHHHhhhcccccccCC
Confidence            348999999999999999985 455    7899999987533222 2222  12122 22333222211      23556


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCCc--------------cccCCH---HHHHHHHHHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSFE--------------EQLNAK---EQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~~--------------~~~~~~---~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+|||||++ |+|.++++.......              ......   ..+...++.+|.|||+.+|+|||||
T Consensus       209 ~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLK  282 (566)
T PLN03225        209 EYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVK  282 (566)
T ss_pred             ceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCC
Confidence            8999999999 699999975320000              000001   1233344489999999999887776

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.03  E-value=1.5e-09  Score=122.03  Aligned_cols=109  Identities=16%  Similarity=0.116  Sum_probs=81.1

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEee-cc----------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLV-KT----------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~-~~----------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      |...+.||+|+||+||++.. .+..+++|+.. +.          ..+.+.+|++++..+ +|++++....++...+..+
T Consensus       335 ~~~~~~iG~G~~g~Vy~~~~-~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        335 KIPDHLIGKGAEADIKKGEY-LGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEA-RRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             cCccceeccCCcEEEEEEee-cCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhh-cccCCCeeEEEEEeCCCCE
Confidence            45578899999999999643 44445554322 11          123578999999887 9999999888888888889


Q ss_pred             EEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++| +|.+++...           ..+.+.+..++.+||+.+++|||+|
T Consensus       413 lv~E~~~g~~L~~~l~~~-----------~~~~~~i~~~L~~lH~~giiHrDlk  455 (535)
T PRK09605        413 IVMEYIGGKDLKDVLEGN-----------PELVRKVGEIVAKLHKAGIVHGDLT  455 (535)
T ss_pred             EEEEecCCCcHHHHHHHH-----------HHHHHHHHHHHHHHHhCCCccCCCC
Confidence            99999994 999988631           2344455589999999998776665

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.03  E-value=1.3e-09  Score=105.93  Aligned_cols=105  Identities=17%  Similarity=0.143  Sum_probs=78.6

Q ss_pred             eEeecCceEEEEEEeeCCcEEEEEEeecc-----c------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          480 EIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----H------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .||+|+||.||++. .+|..|++|.....     .      .+.+.+|++++..+ +|+++....-++...+..+++|||
T Consensus         1 ~ig~G~~~~vy~~~-~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGD-FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRA-RKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEee-cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEEECCCCEEEEEE
Confidence            47999999999975 67889999986531     1      13567899998887 887766666666677778999999


Q ss_pred             CCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++| +|.+++....    .      .+...+..++.++|..+++|+|++
T Consensus        79 ~~g~~l~~~~~~~~----~------~~~~~i~~~l~~lH~~gi~H~Dl~  117 (199)
T TIGR03724        79 IEGKPLKDVIEEGN----D------ELLREIGRLVGKLHKAGIVHGDLT  117 (199)
T ss_pred             ECCccHHHHHhhcH----H------HHHHHHHHHHHHHHHCCeecCCCC
Confidence            995 9998886421    0      344445589999999988766665

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=2.1e-11  Score=119.33  Aligned_cols=114  Identities=18%  Similarity=0.195  Sum_probs=89.1

Q ss_pred             EEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----EEEE
Q 007199          476 VFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----FVYL  544 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----~~~L  544 (613)
                      +-.+.||-|+||.||.. +-.+|+.||.|++..     ...+.+.+|+.+|... +|.|++..++......     ++|+
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfF-kHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSF-RHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhh-ccccHHHHHHhcCCCCchHHHHHHH
Confidence            34568999999999985 567899999999875     2445788999888777 9999999988776543     6889


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|+|..+|...|-.      ...+.-+.+.-   .+.+||+|||+.+|.|||||
T Consensus       135 ~TELmQSDLHKIIVS------PQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIK  183 (449)
T KOG0664|consen  135 LTELMQSDLHKIIVS------PQALTPDHVKVFVYQILRGLKYLHTANILHRDIK  183 (449)
T ss_pred             HHHHHHhhhhheecc------CCCCCcchhhhhHHHHHhhhHHHhhcchhhccCC
Confidence            999999999888763      23333333333   33389999999999998888

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=3.7e-11  Score=126.37  Aligned_cols=126  Identities=20%  Similarity=0.173  Sum_probs=98.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      ++....||-|+||.|-+.. ......+|+|++++.      ..+.+..|-++|+.+ +.|.||++|..|.++.++|++||
T Consensus       422 l~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~-~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  422 LKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMEC-RSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhc-CchHHHHHHHHhccchhhhhhHH
Confidence            5556679999999999854 333335899999873      234677888899888 89999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCCcC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANGHP  604 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg~P  604 (613)
                      -|- |.|+..|+.+.   ............++.+|+.|||+++||.||||    +|+.+|.+
T Consensus       501 aClGGElWTiLrdRg---~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~  559 (732)
T KOG0614|consen  501 ACLGGELWTILRDRG---SFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYL  559 (732)
T ss_pred             hhcCchhhhhhhhcC---CcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCce
Confidence            998 69999998753   11112223344444599999999999999998    77777765

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.01  E-value=3.5e-10  Score=122.77  Aligned_cols=121  Identities=24%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             cCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      ..+.|.+...+|.|+|+.|-++ ...+++..|||++.+. ..+..+|+.++....+||||+++.+.+.+..+.|+|||++
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~-~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l  398 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR-ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELL  398 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheecccc-ccccccccchhhhhcCCCcceeecceecCCceeeeeehhc
Confidence            3455888888999999999986 5788999999999875 4456677777777779999999999999999999999999


Q ss_pred             Cc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          550 TC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .| -|.+.+...+   ........|+.. +..++.|||.++++|||+|
T Consensus       399 ~g~ell~ri~~~~---~~~~e~~~w~~~-lv~Av~~LH~~gvvhRDLk  442 (612)
T KOG0603|consen  399 DGGELLRRIRSKP---EFCSEASQWAAE-LVSAVDYLHEQGVVHRDLK  442 (612)
T ss_pred             cccHHHHHHHhcc---hhHHHHHHHHHH-HHHHHHHHHhcCeeecCCC
Confidence            94 6666665432   111111124333 3389999999999988876

>smart00090 RIO RIO-like kinase

Probab=98.99  E-value=8.3e-10  Score=110.83  Aligned_cols=115  Identities=17%  Similarity=-0.010  Sum_probs=76.9

Q ss_pred             eEEEeeeEeecCceEEEEEE--eeCCcEEEEEEeeccch---------------------------HHHHHHHHHHHhcC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG--NYEGRSVAVKRLVKTHH---------------------------DVALKEIQNLIASD  524 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~--~~~g~~VAVK~l~~~~~---------------------------~~~~~Ei~~L~~l~  524 (613)
                      .|.+.+.||+|+||.||+|.  ..+|+.||||+++....                           ..+.+|++++.++ 
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L-  107 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL-  107 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            37788899999999999986  67899999999874210                           1356899999888 


Q ss_pred             CC--CcceeEEEEEEeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCC-ceeeccc
Q 007199          525 QH--PNIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVM-ENTKDIE  596 (613)
Q Consensus       525 ~H--pnIV~l~g~~~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~-iiHrDlK  596 (613)
                      .+  ..+.+++++    ...+|||||++| +|...+....   .........+...+..++.+||..+ ++|||+|
T Consensus       108 ~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dik  176 (237)
T smart00090      108 YEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV---EPEEEEEFELYDDILEEMRKLYKEGELVHGDLS  176 (237)
T ss_pred             HhcCCCCCeeeEe----cCceEEEEEecCCcccccccccC---CcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCC
Confidence            54  234444443    234899999997 6655442211   1111111233344448999999999 8777665

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.99  E-value=3.4e-10  Score=113.52  Aligned_cols=126  Identities=25%  Similarity=0.254  Sum_probs=96.7

Q ss_pred             cCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      +..+|.-.+.+|.|.- .|.-+ +.-.++.||+|.+..     .+.+...+|...+..+ .|+||++++.+|....    
T Consensus        15 v~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v-~~~nii~l~n~ftP~~~l~~   92 (369)
T KOG0665|consen   15 VPKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCV-NHKNIISLLNVFTPQKTLEE   92 (369)
T ss_pred             eeeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhh-cccceeeeeeccCccccHHH
Confidence            3345888888999887 55544 466788999998765     2445788999766555 9999999999998654    


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                        +.|+|||||.++|.++++.     +........+....+.|++|+|+.+|+||       |.||+||+++
T Consensus        93 ~~e~y~v~e~m~~nl~~vi~~-----elDH~tis~i~yq~~~~ik~lhs~~IihR-------dLkPsnivv~  152 (369)
T KOG0665|consen   93 FQEVYLVMELMDANLCQVILM-----ELDHETISYILYQMLCGIKHLHSAGIIHR-------DLKPSNIVVN  152 (369)
T ss_pred             HHhHHHHHHhhhhHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHhcceeec-------ccCcccceec
Confidence              5899999999999999884     33344445555555589999999999887       5578888875

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.96  E-value=5.2e-09  Score=103.29  Aligned_cols=105  Identities=30%  Similarity=0.374  Sum_probs=85.6

Q ss_pred             CceEEEEEEe-eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCc-cHHHHHH
Q 007199          485 SNGTVVLEGN-YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC-SLNDLIY  558 (613)
Q Consensus       485 ~fG~Vyk~~~-~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~G-sL~~~L~  558 (613)
                      +||.||++.. .+|+.+|+|++....    .+.+.+|++.+.++ +|+||+++++++......++++||+++ +|.+++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKL-KHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhC-CCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            5899999854 468999999998632    57899999988888 999999999999999999999999995 9999997


Q ss_pred             HhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          559 VLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ...      .++......++.   .++.+||..+++|+|++
T Consensus        80 ~~~------~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~  114 (244)
T smart00220       80 KRG------RLSEDEARFYARQILSALEYLHSNGIIHRDLK  114 (244)
T ss_pred             hcc------CCCHHHHHHHHHHHHHHHHHHHHcCeecCCcC
Confidence            642      144444444433   89999999999888877

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.95  E-value=1.5e-09  Score=114.83  Aligned_cols=127  Identities=17%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc--hHHHHHHHHHHHhcC-----CCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH--HDVALKEIQNLIASD-----QHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~-----~HpnIV~l~g~~~~~~~~~L  544 (613)
                      ..|.+....|+|-|++|..| ...-|..||||+|+...  .+.-++|+++|.++-     .--|+++|+..|...+++||
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLCl  511 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCL  511 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEE
Confidence            56888888999999999997 46667899999999743  346678999999881     12489999999999999999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      |+|-+.-+|.++|+..+   ..-.+.+..+   ..++..||.+|-..+|+|.       |+||.|||+
T Consensus       512 VFE~LslNLRevLKKyG---~nvGL~ikaVRsYaqQLflALklLK~c~vlHa-------DIKPDNiLV  569 (752)
T KOG0670|consen  512 VFEPLSLNLREVLKKYG---RNVGLHIKAVRSYAQQLFLALKLLKKCGVLHA-------DIKPDNILV  569 (752)
T ss_pred             EehhhhchHHHHHHHhC---cccceeehHHHHHHHHHHHHHHHHHhcCeeec-------ccCccceEe
Confidence            99999899999999876   3334443333   3444478889888888654       556666665

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.94  E-value=4e-09  Score=106.32  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=103.4

Q ss_pred             cccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .+++-+|.++++||+|+||..+.+ .+.+++.||||.=.. +...++..|.+..+.+...+.|...|-+....-+-.||+
T Consensus        24 ~~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVi  103 (449)
T KOG1165|consen   24 LMVGPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVI  103 (449)
T ss_pred             eEecccceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhh
Confidence            366777999999999999999997 489999999996654 455588889888877778899999998888888889999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++..||.|+..-+.+++  +......++..++.-++++|.+..|.||||
T Consensus       104 dLLGPSLEDLFD~CgR~F--SvKTV~miA~Qmi~rie~vH~k~LIYRDIK  151 (449)
T KOG1165|consen  104 DLLGPSLEDLFDLCGRRF--SVKTVAMIAKQMITRIEYVHEKDLIYRDIK  151 (449)
T ss_pred             hhhCcCHHHHHHHhcCcc--cHHhHHHHHHHHHHHHHHHHhcceeecccC
Confidence            999988888888876533  333445666666788999999999998887

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.92  E-value=4.1e-09  Score=102.69  Aligned_cols=108  Identities=17%  Similarity=0.072  Sum_probs=76.4

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc-------------------------hHHHHHHHHHHHhcCCCC--
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-------------------------HDVALKEIQNLIASDQHP--  527 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-------------------------~~~~~~Ei~~L~~l~~Hp--  527 (613)
                      |...+.||+|+||.||++...+|+.||||+++...                         ...+.+|..++.++ .|+  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKAL-YEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHH-HHcCC
Confidence            67788999999999999876789999999876421                         01356788888777 666  


Q ss_pred             cceeEEEEEEeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          528 NIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       528 nIV~l~g~~~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++.++    ....++||||++| +|.++...         .....+...+..++.++|..+++|||+|
T Consensus        96 ~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~  152 (198)
T cd05144          96 PVPKPID----WNRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAYKHGIIHGDLS  152 (198)
T ss_pred             CCCceee----cCCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHHHCCCCcCCCC
Confidence            4455443    2456899999996 87655421         1123344445588899999888777766

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.90  E-value=1.1e-08  Score=107.69  Aligned_cols=119  Identities=21%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             eEEEeeeEeecCceEEEEEEe-eC-CcEEEEEEeeccc---hHHHHHHHHHHHhcC---CCCcceeEEEEE-EeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-YE-GRSVAVKRLVKTH---HDVALKEIQNLIASD---QHPNIVRWYGVE-SDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-~~-g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~---~HpnIV~l~g~~-~~~~~~~L  544 (613)
                      .|.+.+.||+|+||.||++.. .+ ...+|+|......   ...+..|+.++..+.   .-+++.+++... ....+.||
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            599999999999999999753 33 3578999777531   226888888888773   236899999999 57789999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+.+..+|.++.....    ...++..-..++.+   .+|++||+.+++|||||
T Consensus        99 VM~l~G~sL~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiK  149 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNP----PGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIK  149 (322)
T ss_pred             EEeccCccHHHHHHhCC----CCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcC
Confidence            99999889999886542    33455544555444   89999999999888887

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=7.5e-09  Score=119.76  Aligned_cols=118  Identities=20%  Similarity=0.108  Sum_probs=84.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhc--CCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIAS--DQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.++||+|+||+||+|.-.+|+.||+|.=+....-+|.-=.+++.++  .--+-|..+..++...+.-+||+||.+
T Consensus       698 ~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~  777 (974)
T KOG1166|consen  698 EKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSP  777 (974)
T ss_pred             eeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccc
Confidence            568999999999999999986666999999988764443333222233333  012456666677777888899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++...      ..+.+...+.+.+   ..+.+||..+|||.|||
T Consensus       778 ~Gtlld~~N~~------~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiK  821 (974)
T KOG1166|consen  778 YGTLLDLINTN------KVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIK  821 (974)
T ss_pred             cccHHHhhccC------CCCCchhhhHHHHHHHHHHHHHHhcceecccCC
Confidence             9999999843      3344444444333   78899999999876665

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.78  E-value=9.2e-09  Score=105.61  Aligned_cols=123  Identities=19%  Similarity=0.154  Sum_probs=86.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQ-DF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~  541 (613)
                      .+++...++-+|.||.||.+..      .+.+.|-||.++...    ...+..|--.|... .|||+..+.+.+... +.
T Consensus       284 ~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~-sH~nll~V~~V~ie~~~~  362 (563)
T KOG1024|consen  284 CRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGA-SHPNLLSVLGVSIEDYAT  362 (563)
T ss_pred             hheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-cCCCccceeEEEeeccCc
Confidence            3477788899999999999731      122346667666532    22566777556555 899999999988764 47


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCcc--ccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEE--QLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~--~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .++++.++. |+|..||..+++-...  ..+...+.   ..++..||.|||+.++||.||-
T Consensus       363 P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiA  423 (563)
T KOG1024|consen  363 PFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIA  423 (563)
T ss_pred             ceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhh
Confidence            888999999 9999999977632111  22222222   2233389999999999999985

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.77  E-value=1.1e-07  Score=96.98  Aligned_cols=123  Identities=29%  Similarity=0.353  Sum_probs=94.9

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCC-cceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHP-NIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~Hp-nIV~l~g~~~~~~~~~LV~E  547 (613)
                      |...+.||.|+||.||++...  ..+|+|.+...      ....+.+|++.+..+ .|+ +|++++..+......++++|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASL-NHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHc-cCCcceeeEEEEEecCCEEEEEEe
Confidence            567889999999999997544  78899988862      244788999888777 666 89999999988888899999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      ++. ++|.+++......   ..+.......+..   .++.++|+.+++|||+|       |+|+|+.
T Consensus        79 ~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~k-------p~nil~~  135 (384)
T COG0515          79 YVDGGSLEDLLKKIGRK---GPLSESEALFILAQILSALEYLHSKGIIHRDIK-------PENILLD  135 (384)
T ss_pred             cCCCCcHHHHHHhcccc---cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-------HHHeeec
Confidence            999 5888777653210   2344444444444   67789999999998888       8888875

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1.9e-07  Score=100.62  Aligned_cols=179  Identities=16%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccc-----------cccCCC---CCeEEEecCCCCeEEEEecCC
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQ-----------ASFNSN---ASEFYLDVDEDWELYFHSKRF  112 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~-----------~~~~~~---~~~~~i~~~~DG~lY~~~~~~  112 (613)
                      .+|++|+.|--.+++|||+.||+++|+|+.........+           +.....   ...+|++.. |.+|.++|+++
T Consensus       213 vgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~-DarlIALdA~t  291 (773)
T COG4993         213 VGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTA-DARLIALDADT  291 (773)
T ss_pred             ECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecC-CceEEEEeCCC
Confidence            789999999999999999999999999985432111111           111110   123566555 99999999999


Q ss_pred             CceeeecccHHHH---------------hhh-CceeecCCcEEEEeecc---------eEEEEECCCCcEEEEEecCCCC
Q 007199          113 GKMKKLSSSAEEY---------------IRR-MPYISKDGGVTLGAMKT---------SVFLVDVKSGRVVDNYVLDFSA  167 (613)
Q Consensus       113 G~l~~~~~~~~~~---------------v~~-sP~~~~dg~v~~Gs~~~---------~~~~vD~~tG~~~~~~~~~~~~  167 (613)
                      |++ -|.|.....               +.. .|.+...++|+.|+-.+         .+-+.|..||+++|.++.+.+-
T Consensus       292 Gkv-c~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD  370 (773)
T COG4993         292 GKV-CWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPD  370 (773)
T ss_pred             CcE-eheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCC
Confidence            999 888865443               333 34456455555565433         3678899999999999998876


Q ss_pred             CCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeee------------------eEEEEEeCCCCceEEEEEe
Q 007199          168 STPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTD------------------YVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d------------------~~l~a~d~~~G~~~Wn~t~  229 (613)
                      .+.|....+. +  +-+..+ .-++..-++  -.++||++--.                  -.+-|+|.+||+++|.+-.
T Consensus       371 ~t~p~~~g~t-y--t~nspn-~W~~~SyD~--~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQt  444 (773)
T COG4993         371 PTAPTAPGQT-Y--TRNSPN-SWASASYDA--KLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQT  444 (773)
T ss_pred             CCCCCCCCce-e--ecCCCC-cccccccCC--CCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeec
Confidence            5555443322 1  101100 011111222  14577775432                  3578999999999999876


Q ss_pred             ceee
Q 007199          230 ADFK  233 (613)
Q Consensus       230 ~~~~  233 (613)
                      ...+
T Consensus       445 vhhD  448 (773)
T COG4993         445 VHHD  448 (773)
T ss_pred             cCcc
Confidence            6544

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.69  E-value=1.5e-07  Score=94.71  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=80.5

Q ss_pred             eeeEe-ecCceEEEEEEeeCCcEEEEEEeecc----------------chHHHHHHHHHHHhcCCCCcc--eeEEEEEEe
Q 007199          478 NKEIA-KGSNGTVVLEGNYEGRSVAVKRLVKT----------------HHDVALKEIQNLIASDQHPNI--VRWYGVESD  538 (613)
Q Consensus       478 ~~~LG-~G~fG~Vyk~~~~~g~~VAVK~l~~~----------------~~~~~~~Ei~~L~~l~~HpnI--V~l~g~~~~  538 (613)
                      ...|| .|+.|+||+... .+..++||++...                ....+.+|++++.++ +|++|  ++.+++...
T Consensus        36 ~~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L-~~~gi~vP~pl~~~~~  113 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQL-YEAGLPVPRPIAARVV  113 (239)
T ss_pred             CceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHH-HhCCCCCceeEeeeee
Confidence            45687 888888988543 4778999987531                123578899999888 88774  777777544


Q ss_pred             CC-E---EEEEecCCCc--cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          539 QD-F---VYLSLERCTC--SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       539 ~~-~---~~LV~E~~~G--sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .. .   .+||||+++|  +|.+++...       .++... ...+..++.+||..+|+|||+|    |++.++
T Consensus       114 ~~~~~~~~~lV~e~l~G~~~L~~~l~~~-------~l~~~~-~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~  179 (239)
T PRK01723        114 RHGLFYRADILIERIEGARDLVALLQEA-------PLSEEQ-WQAIGQLIARFHDAGVYHADLNAHNILLDPDG  179 (239)
T ss_pred             ecCcceeeeEEEEecCCCCCHHHHHhcC-------CCCHHH-HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCC
Confidence            32 2   3599999995  899888642       233333 3344589999999999888877    555444

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.59  E-value=2e-07  Score=101.97  Aligned_cols=114  Identities=18%  Similarity=0.015  Sum_probs=71.0

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccchH-------------------------------------------HHH
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD-------------------------------------------VAL  514 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~-------------------------------------------~~~  514 (613)
                      .+.||+|++|+||+|...+|+.||||+.++.-.+                                           ++.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            3579999999999998889999999998753111                                           133


Q ss_pred             HHHHHHHhc---CCCCcceeEEEEE-EeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHH-HHHHHHHHhcC
Q 007199          515 KEIQNLIAS---DQHPNIVRWYGVE-SDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNL-LNEVRIRLLPV  588 (613)
Q Consensus       515 ~Ei~~L~~l---~~HpnIV~l~g~~-~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~-~~~~l~~Lh~~  588 (613)
                      +|.+.+.++   .+|.+-+.+-..+ ......+|||||++| +|.++.....    . ......+... +..++.++|..
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~----~-~~~~~~ia~~~~~~~l~ql~~~  276 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDE----A-GLDRKALAENLARSFLNQVLRD  276 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHh----c-CCCHHHHHHHHHHHHHHHHHhC
Confidence            455444443   2233323332232 223457899999996 8888765421    1 1122233333 33578899988


Q ss_pred             Cceeeccc
Q 007199          589 MENTKDIE  596 (613)
Q Consensus       589 ~iiHrDlK  596 (613)
                      +++|+|++
T Consensus       277 g~~H~D~h  284 (437)
T TIGR01982       277 GFFHADLH  284 (437)
T ss_pred             CceeCCCC
Confidence            88766655

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.58  E-value=2.4e-07  Score=89.02  Aligned_cols=109  Identities=18%  Similarity=0.105  Sum_probs=66.5

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccch-----HH----------------------HHHHHHHHHhcCCCC--c
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHH-----DV----------------------ALKEIQNLIASDQHP--N  528 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~-----~~----------------------~~~Ei~~L~~l~~Hp--n  528 (613)
                      .+.||+|+||+||++...+++.||||+++....     ..                      ...|.+.+.++ .+.  .
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRL-YEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHH-HHcCCC
Confidence            457999999999998766899999998875211     11                      13455555554 222  3


Q ss_pred             ceeEEEEEEeCCEEEEEecCCCc-cHH-HHHHHhcCCCccccCCHHHHHHHHHHHHHHHhc-CCceeeccc
Q 007199          529 IVRWYGVESDQDFVYLSLERCTC-SLN-DLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       529 IV~l~g~~~~~~~~~LV~E~~~G-sL~-~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~-~~iiHrDlK  596 (613)
                      +.+++++    ...++||||++| .+. ..+....   ..  .....+.+.+..++.++|. .+++|||+|
T Consensus        81 ~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~---~~--~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~  142 (187)
T cd05119          81 VPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR---LL--EDPEELYDQILELMRKLYREAGLVHGDLS  142 (187)
T ss_pred             CCceEec----CCCEEEEEEeCCCCccChhhhhhh---hc--ccHHHHHHHHHHHHHHHhhccCcCcCCCC
Confidence            4455543    245899999995 322 2232211   00  2223344444589999998 887666554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.55  E-value=3e-07  Score=83.78  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccc-hHHHHHHHHHHHhcCCC--CcceeEEEEEEeCCEEEEEecCCCc-cH
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-HDVALKEIQNLIASDQH--PNIVRWYGVESDQDFVYLSLERCTC-SL  553 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-~~~~~~Ei~~L~~l~~H--pnIV~l~g~~~~~~~~~LV~E~~~G-sL  553 (613)
                      .+.||+|.++.||++... +..+++|...... ...+.+|+..+..+ +|  .++++++.++...+..+++|||++| .+
T Consensus         3 ~~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~~~~~~~e~~~~~~l-~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~   80 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTK-DEDYVLKINPSREKGADREREVAILQLL-ARKGLPVPKVLASGESDGWSYLLMEWIEGETL   80 (155)
T ss_pred             ceecccccccceEEEEec-CCeEEEEecCCCCchhHHHHHHHHHHHH-HHcCCCCCeEEEEcCCCCccEEEEEecCCeec
Confidence            467999999999996543 4789999987643 35788999988888 55  5899999988888899999999996 55


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          554 NDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       554 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ..+ .         ..........+..++.++|....    .-++|+|.+|.|+|+
T Consensus        81 ~~~-~---------~~~~~~~~~~~~~~l~~lh~~~~----~~i~H~Dl~~~Nil~  122 (155)
T cd05120          81 DEV-S---------EEEKEDIAEQLAELLAKLHQLPL----LVLCHGDLHPGNILV  122 (155)
T ss_pred             ccC-C---------HHHHHHHHHHHHHHHHHHhCCCc----eEEEecCCCcceEEE
Confidence            432 0         00112233444477888887531    113445555666665

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PF01011 PQQ: PQQ enzyme repeat family

Probab=98.53  E-value=1.1e-07  Score=66.58  Aligned_cols=35  Identities=40%  Similarity=0.664  Sum_probs=32.5

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeec
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSS   83 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~   83 (613)
                      |.||+++.||.|||+|+.||+++|+|++++++.++
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~   35 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSS   35 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSC
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccC
Confidence            57999999999999999999999999999888765

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.4e-06  Score=94.11  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=98.1

Q ss_pred             CCCCeeeEEeeCCCceeec------cccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCcee-ecCC-
Q 007199           65 TKLGKIRWSFGTGRPIYSS------YQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYI-SKDG-  136 (613)
Q Consensus        65 ~~tG~~~W~~~~~~~i~s~------~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~-~~dg-  136 (613)
                      -..=++.|+|+||..-...      ++.......+.+|+..+ .-.+|++|+.||+. ||+|....--.-.|+. .++| 
T Consensus       181 V~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTp-hn~v~ALDa~TGke-kWkydp~~~~nv~~~~~tCrgV  258 (773)
T COG4993         181 VGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTP-HNRVFALDAATGKE-KWKYDPNLKSNVDPQHQTCRGV  258 (773)
T ss_pred             hhccceeEEEecCcccCCCCcccccccccceEECCEEEEecC-cceeEEeeccCCce-eeecCCCCCCCcccccccccce
Confidence            3445789999998632111      11111111235565555 99999999999999 9999876543333431 1222 


Q ss_pred             ---------------cEEEEeecceEEEEECCCCcEEEEEecCCCCCCC-CCcCCCCCccccCCCccccccccccccccc
Q 007199          137 ---------------GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTP-GFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       137 ---------------~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                                     +||++.-|.++.|||++||++.|.|...+..... .+....       .+.-+..++..    ..
T Consensus       259 sy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k-------~g~y~~tS~p~----~~  327 (773)
T COG4993         259 SYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTK-------DGLYYGTSPPE----FG  327 (773)
T ss_pred             ecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCC-------CCeEeecCCCc----cc
Confidence                           3999999999999999999999999876643211 111110       11111112111    12


Q ss_pred             ccEEEEEe----------eeeEEEEEeCCCCceEEEEEeceeeeee
Q 007199          201 RQLVYIMR----------TDYVLQSTSQDSGEVLWNVAYADFKAEF  236 (613)
Q Consensus       201 ~~~v~igr----------~d~~l~a~d~~~G~~~Wn~t~~~~~a~~  236 (613)
                      ...++||+          .-+.++++|..+|+..|++.-+-=+.+.
T Consensus       328 ~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~  373 (773)
T COG4993         328 VKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTA  373 (773)
T ss_pred             ceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCC
Confidence            33555543          3466799999999999999877554443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.30  E-value=3.9e-06  Score=93.37  Aligned_cols=117  Identities=16%  Similarity=0.062  Sum_probs=71.1

Q ss_pred             EEEeeeEeecCceEEEEEEeeC-CcEEEEEEeeccch-------------------------------------H-----
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHH-------------------------------------D-----  511 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~-g~~VAVK~l~~~~~-------------------------------------~-----  511 (613)
                      |.. +.||+|++|+||+|...+ |+.||||++++.-.                                     +     
T Consensus       122 fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~E  200 (537)
T PRK04750        122 FDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDE  200 (537)
T ss_pred             cCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHh
Confidence            444 689999999999997666 99999999975210                                     0     


Q ss_pred             -HHHHHHHHHHhc---CCCCcceeEEEEEEe-CCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHH
Q 007199          512 -VALKEIQNLIAS---DQHPNIVRWYGVESD-QDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRL  585 (613)
Q Consensus       512 -~~~~Ei~~L~~l---~~HpnIV~l~g~~~~-~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L  585 (613)
                       ++.+|+..+.++   ..+.+.+.+-..+.+ ....+||||||.| .|.++-.-.    ....-........+..++.++
T Consensus       201 lD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~----~~g~d~~~la~~~v~~~~~Qi  276 (537)
T PRK04750        201 LDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALR----AAGTDMKLLAERGVEVFFTQV  276 (537)
T ss_pred             hCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHH----hcCCCHHHHHHHHHHHHHHHH
Confidence             234455444443   234444444444433 4467899999996 887643211    111111223333333677888


Q ss_pred             hcCCceeeccc
Q 007199          586 LPVMENTKDIE  596 (613)
Q Consensus       586 h~~~iiHrDlK  596 (613)
                      +..+++|+|+|
T Consensus       277 f~~GffHaDpH  287 (537)
T PRK04750        277 FRDGFFHADMH  287 (537)
T ss_pred             HhCCeeeCCCC
Confidence            88787776665

>PF01011 PQQ: PQQ enzyme repeat family

Probab=98.19  E-value=1.9e-06  Score=60.39  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=29.8

Q ss_pred             CcEEEEeecceEEEEECCCCcEEEEEecCCCCC
Q 007199          136 GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSAS  168 (613)
Q Consensus       136 g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~  168 (613)
                      |.||+|+.++.+||+|++||+++|+|..+....
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~   33 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVD   33 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence            579999999999999999999999999876544

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=98.08  E-value=2.6e-06  Score=60.34  Aligned_cols=40  Identities=23%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             CceeeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCC
Q 007199          113 GKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKS  154 (613)
Q Consensus       113 G~l~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~t  154 (613)
                      |++ +|.+.++..+.++|++. ||.||+|+.++++||||++|
T Consensus         1 G~~-~W~~~~~~~~~~~~~v~-~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen    1 GKV-LWSYDTGGPIWSSPAVA-GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             S-E-EEEEE-SS---S--EEC-TSEEEEE-TTSEEEEEETT-
T ss_pred             Cce-eEEEECCCCcCcCCEEE-CCEEEEEcCCCEEEEEeCCC
Confidence            567 99999999999999998 89999999999999999986

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.02  E-value=2.8e-05  Score=73.08  Aligned_cols=115  Identities=11%  Similarity=-0.004  Sum_probs=75.3

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeeccc--hHHHHHHHHHHHhcCCCCc-ceeEEEEEEeCCEEEEEecCCCc-cHH
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPN-IVRWYGVESDQDFVYLSLERCTC-SLN  554 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~Hpn-IV~l~g~~~~~~~~~LV~E~~~G-sL~  554 (613)
                      +.|+.|.++.||+.. ..+..+++|......  ...+.+|++++..+ .+.+ +.+++.+.  .+..++||||++| ++.
T Consensus         4 ~~l~~G~~~~vy~~~-~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l-~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           4 SPLKGGMTNKNYRVE-VANKKYVVRIPGNGTELLINRENEAENSKLA-AEAGIGPKLYYFD--PETGVLITEFIEGSELL   79 (170)
T ss_pred             eecCCcccCceEEEE-ECCeEEEEEeCCCCcccccCHHHHHHHHHHH-HHhCCCCceEEEe--CCCCeEEEEecCCCccc
Confidence            568899999999854 347889999876543  23567888888776 4433 44555543  3345799999997 664


Q ss_pred             HHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          555 DLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       555 ~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      +. .         ... ......+..++..||...+-  ...++|.|.+|+|+|+.
T Consensus        80 ~~-~---------~~~-~~~~~~l~~~l~~LH~~~~~--~~~~~HgD~~~~Nil~~  122 (170)
T cd05151          80 TE-D---------FSD-PENLEKIAKLLKKLHSSPLP--DLVPCHNDLLPGNFLLD  122 (170)
T ss_pred             cc-c---------ccC-HHHHHHHHHHHHHHhCCCCC--CceeecCCCCcCcEEEE
Confidence            32 0         011 12234445788999997752  22367777788888763

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>smart00564 PQQ beta-propeller repeat

Probab=97.93  E-value=1.4e-05  Score=53.89  Aligned_cols=32  Identities=28%  Similarity=0.637  Sum_probs=28.5

Q ss_pred             ceeecCCcEEEEeecceEEEEECCCCcEEEEE
Q 007199          130 PYISKDGGVTLGAMKTSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       130 P~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~  161 (613)
                      |.+..||.+|+|+.++.+||+|++||+++|++
T Consensus         1 ~~~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CcEEECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            34555889999999999999999999999986

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>smart00564 PQQ beta-propeller repeat

Probab=97.91  E-value=1.4e-05  Score=53.81  Aligned_cols=29  Identities=31%  Similarity=0.631  Sum_probs=26.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG   75 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~   75 (613)
                      .++.+|+++.||.|||+|..+|+++|+++
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~~   33 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEILWTYK   33 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence            45699999999999999999999999873

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=4.8e-06  Score=94.26  Aligned_cols=123  Identities=20%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             EEeeeEeecCceEEEEE-EeeCCcEEEEEEee----ccc-hH----HHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          476 VFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLV----KTH-HD----VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~----~~~-~~----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ....++|.|++|.|+.. ........+.|..+    ... ..    .+..|. .+...+.|||++..+..+......+-.
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~-~i~~~l~h~~~~e~l~~~~~~~~~~~~  399 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEF-CIGSSLSHPNIIETLDIVQEIDGILQS  399 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhhe-eecccccCCchhhhHHHHhhcccchhh
Confidence            46778999999977764 33334444444332    211 11    233444 223335999998887777766666666


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+++|+.++....   .....+.++..++++.|+.|+|..++.|||+|    ++..+|
T Consensus       400 mE~~~~Dlf~~~~~~~---~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g  457 (601)
T KOG0590|consen  400 MEYCPYDLFSLVMSNG---KLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENG  457 (601)
T ss_pred             hhcccHHHHHHHhccc---ccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCC
Confidence            9999999999998642   34556677888888899999999999999998    555555

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=97.76  E-value=0.00029  Score=70.68  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=99.6

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIR  127 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~  127 (613)
                      .+.++|++.||.|...|..+-+++=+|..+.||...  +..+ + ...|. ++.||.+-.+|.++|....+. +=.+.+.
T Consensus        25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c--~F~d-~-~~~~~-G~~dg~vr~~Dln~~~~~~ig-th~~~i~   98 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDC--AFAD-E-STIVT-GGLDGQVRRYDLNTGNEDQIG-THDEGIR   98 (323)
T ss_pred             CCcEEEEeccCcEEEEeccchhhhhheecCCceeee--eccC-C-ceEEE-eccCceEEEEEecCCcceeec-cCCCceE
Confidence            477889999999999998888999999999999987  3222 2 23444 555999999999988772222 2223333


Q ss_pred             hCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEE
Q 007199          128 RMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIM  207 (613)
Q Consensus       128 ~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ig  207 (613)
                      .--....+|.|+.||||.++-.+|+.+-...-.+..+..+                    .+.+.       .+++|++|
T Consensus        99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkV--------------------y~~~v-------~g~~LvVg  151 (323)
T KOG1036|consen   99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKV--------------------YCMDV-------SGNRLVVG  151 (323)
T ss_pred             EEEeeccCCeEEEcccCccEEEEeccccccccccccCceE--------------------EEEec-------cCCEEEEe
Confidence            3222234778999999999999999863233222222211                    12221       25699999


Q ss_pred             eeeeEEEEEeCCCCceEE
Q 007199          208 RTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       208 r~d~~l~a~d~~~G~~~W  225 (613)
                      ..|..|..+|.++=....
T Consensus       152 ~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen  152 TSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             ecCceEEEEEcccccchh
Confidence            999999999987655444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.73  E-value=1.4e-05  Score=94.36  Aligned_cols=73  Identities=15%  Similarity=0.089  Sum_probs=51.9

Q ss_pred             CC-CcceeEEEEE-------EeCCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceee
Q 007199          525 QH-PNIVRWYGVE-------SDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTK  593 (613)
Q Consensus       525 ~H-pnIV~l~g~~-------~~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHr  593 (613)
                      +| +||.+++++|       ...+.++++|||++++|.++|+..     ...++...+.   +.++.||.|||+++|+||
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~gIvHr  104 (793)
T PLN00181         30 SHIDYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNP-----DRSVDAFECFHVFRQIVEIVNAAHSQGIVVH  104 (793)
T ss_pred             hHHHHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcc-----cccccHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            55 5788888877       344578889999989999999742     2234444444   444499999999999887


Q ss_pred             ccceecCCCcCcceee
Q 007199          594 DIELWKANGHPSAQLL  609 (613)
Q Consensus       594 DlKllh~dg~PsniLl  609 (613)
                      ||       ||+||||
T Consensus       105 Dl-------KP~NiLl  113 (793)
T PLN00181        105 NV-------RPSCFVM  113 (793)
T ss_pred             cC-------CchhEEE
Confidence            66       5555555

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.69  E-value=0.00091  Score=68.55  Aligned_cols=148  Identities=13%  Similarity=0.185  Sum_probs=102.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee-CCCce-eeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG-TGRPI-YSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~-~~~~i-~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .+.++-.|.++|.|.-.+..||..+|++. ...-| .-.+-. .    ..+++.|+.||+++++....+.+.+.-.-   
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~----a~illAG~~DGsvWmw~ip~~~~~kv~~G---  188 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-R----AHILLAGSTDGSVWMWQIPSQALCKVMSG---  188 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-c----ccEEEeecCCCcEEEEECCCcceeeEecC---
Confidence            55666678899999999999999999995 22222 111111 1    15788899999999999987555343322   


Q ss_pred             HhhhCcee----ecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          125 YIRRMPYI----SKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       125 ~v~~sP~~----~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                        +.+||-    .-|| ++.+|..|+++.+-|++||..+-+.+....-...+                  ++..     .
T Consensus       189 --h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~------------------~~~~-----~  243 (399)
T KOG0296|consen  189 --HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC------------------ISLN-----L  243 (399)
T ss_pred             --CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc------------------cccc-----c
Confidence              345553    2255 57789999999999999999998887544221111                  1100     1


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ...+++=|..|..++.++..+|+++--.
T Consensus       244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  244 AGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             ccceeEeccCCccEEEEccccceEEEec
Confidence            2348889999999999999999987543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.69  E-value=0.00014  Score=70.57  Aligned_cols=107  Identities=13%  Similarity=-0.012  Sum_probs=67.2

Q ss_pred             eeEeecCceEEEEEEee-------CCcEEEEEEeecc-------------c------------hH----HHHHHHHHHHh
Q 007199          479 KEIAKGSNGTVVLEGNY-------EGRSVAVKRLVKT-------------H------------HD----VALKEIQNLIA  522 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~-------~g~~VAVK~l~~~-------------~------------~~----~~~~Ei~~L~~  522 (613)
                      ..||.|.-+.||.|...       .+..+|||..+..             .            ..    ...+|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999997433       3578999976531             0            11    23489999988


Q ss_pred             cCCC-CcceeEEEEEEeCCEEEEEecCCCc-cHH-HHHHHhcCCCccccCCH---HHHHHHHHHHHHHH-hcCCceeecc
Q 007199          523 SDQH-PNIVRWYGVESDQDFVYLSLERCTC-SLN-DLIYVLSGSFEEQLNAK---EQDSNLLNEVRIRL-LPVMENTKDI  595 (613)
Q Consensus       523 l~~H-pnIV~l~g~~~~~~~~~LV~E~~~G-sL~-~~L~~~~~~~~~~~~~~---~~~~~~~~~~l~~L-h~~~iiHrDl  595 (613)
                      +-.. -++.+++.+    ..-+|||||+.| .+. ..++..       .+..   ..+...++.+|..+ |..+++|+|+
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~-------~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDL  151 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA-------KLNDEEMKNAYYQVLSMMKQLYKECNLVHADL  151 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc-------ccCHHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            7332 466676654    456789999985 332 223221       1111   22233444677777 8889988888


Q ss_pred             c
Q 007199          596 E  596 (613)
Q Consensus       596 K  596 (613)
                      +
T Consensus       152 s  152 (197)
T cd05146         152 S  152 (197)
T ss_pred             C
Confidence            7

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.64  E-value=7.6e-06  Score=80.80  Aligned_cols=108  Identities=16%  Similarity=0.136  Sum_probs=84.4

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      +.+..+|.+...|..|+ +++.|..+++|++...     -..+|..|.-.|+- ..||||+.+++.|.....+.++..||
T Consensus       192 lnl~tkl~e~hsgelwr-grwqgndivakil~vr~~t~risrdfneefp~lri-fshpnilpvlgacnsppnlv~isq~m  269 (448)
T KOG0195|consen  192 LNLITKLAESHSGELWR-GRWQGNDIVAKILNVREVTARISRDFNEEFPALRI-FSHPNILPVLGACNSPPNLVIISQYM  269 (448)
T ss_pred             hhhhhhhccCCCccccc-ccccCcchhhhhhhhhhcchhhcchhhhhCcceee-ecCCchhhhhhhccCCCCceEeeeec
Confidence            45566788888899998 5566777777877642     22367888877744 49999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV  588 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~  588 (613)
                      + |||+.+|+..    ........++.++..   .||.|||+.
T Consensus       270 p~gslynvlhe~----t~vvvd~sqav~faldiargmaflhsl  308 (448)
T KOG0195|consen  270 PFGSLYNVLHEQ----TSVVVDHSQAVRFALDIARGMAFLHSL  308 (448)
T ss_pred             cchHHHHHHhcC----ccEEEecchHHHHHHHHHhhHHHHhhc
Confidence            9 9999999975    334455667777766   899999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.61  E-value=9.5e-06  Score=93.45  Aligned_cols=119  Identities=18%  Similarity=0.088  Sum_probs=91.4

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc----hHHHHHHHHHH-HhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH----HDVALKEIQNL-IASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~----~~~~~~Ei~~L-~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .+...+.||++.|=+|.++...+|. |+||.+-+..    .+.+.++++-+ ..+.+|||.+.+.-+......-|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            3788899999999999997777776 8999887632    22333333222 2446999999988887777788999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..-+|+|.|..+.   ........|++.++..|+.++|+.+|+|+|||
T Consensus       103 vkhnLyDRlSTRP---FL~~iEKkWiaFQLL~al~qcH~~gVcHGDIK  147 (1431)
T KOG1240|consen  103 VKHNLYDRLSTRP---FLVLIEKKWIAFQLLKALSQCHKLGVCHGDIK  147 (1431)
T ss_pred             Hhhhhhhhhccch---HHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence            9999999987542   33445678999999999999999999877665

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.60  E-value=0.0012  Score=65.39  Aligned_cols=151  Identities=15%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .++.+++++.||.|+..|..+++...++.... ++..-   ....+ ..+++.++.||.++.+|..+++. ...+... .
T Consensus        62 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~---~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  136 (289)
T cd00200          62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV---AFSPD-GRILSSSSRDKTIKVWDVETGKC-LTTLRGHTD  136 (289)
T ss_pred             CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE---EEcCC-CCEEEEecCCCeEEEEECCCcEE-EEEeccCCC
Confidence            34589999999999999999999999887543 44433   11111 24666677799999999987776 4444421 1


Q ss_pred             HhhhCceeecCCcEEE-EeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDGGVTL-GAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~-Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .+ .+..+..++.+++ |+.++.++..|..+|+.+..+........          .+       ...+       ....
T Consensus       137 ~i-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~----------~~-------~~~~-------~~~~  191 (289)
T cd00200         137 WV-NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN----------SV-------AFSP-------DGEK  191 (289)
T ss_pred             cE-EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc----------eE-------EECC-------CcCE
Confidence            22 1223343454554 55599999999999999988874321100          00       0111       1237


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ++++..|+.|+.+|..+++..-.+
T Consensus       192 l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         192 LLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             EEEecCCCcEEEEECCCCceecch
Confidence            888888999999999887766554

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=97.60  E-value=8.5e-05  Score=52.54  Aligned_cols=40  Identities=35%  Similarity=0.623  Sum_probs=23.4

Q ss_pred             CeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC
Q 007199           68 GKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF  112 (613)
Q Consensus        68 G~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~  112 (613)
                      |+++|++++++++.++..  ..  .+.+|+.+. ||.|||+|++|
T Consensus         1 G~~~W~~~~~~~~~~~~~--v~--~g~vyv~~~-dg~l~ald~~t   40 (40)
T PF13570_consen    1 GKVLWSYDTGGPIWSSPA--VA--GGRVYVGTG-DGNLYALDAAT   40 (40)
T ss_dssp             S-EEEEEE-SS---S--E--EC--TSEEEEE-T-TSEEEEEETT-
T ss_pred             CceeEEEECCCCcCcCCE--EE--CCEEEEEcC-CCEEEEEeCCC
Confidence            899999999998887722  12  234565555 99999999874

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=97.59  E-value=7.4e-05  Score=77.69  Aligned_cols=69  Identities=22%  Similarity=0.261  Sum_probs=52.3

Q ss_pred             CCCCcceeEEEEEEe---------------------------CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHH
Q 007199          524 DQHPNIVRWYGVESD---------------------------QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSN  576 (613)
Q Consensus       524 ~~HpnIV~l~g~~~~---------------------------~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~  576 (613)
                      -+|||||++.++|.+                           ...+|+||...+.+|.+++..+.    .+.-.-..+..
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~~~----~s~r~~~~~la  348 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWTRH----RSYRTGRVILA  348 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhcCC----CchHHHHHHHH
Confidence            489999999998864                           23589999999999999998642    22222223333


Q ss_pred             HHHHHHHHHhcCCceeeccc
Q 007199          577 LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       577 ~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++.+++.|||++++.|||+|
T Consensus       349 QlLEav~hL~~hgvAhRDlK  368 (598)
T KOG4158|consen  349 QLLEAVTHLHKHGVAHRDLK  368 (598)
T ss_pred             HHHHHHHHHHHccchhhccc
Confidence            34499999999999999999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.59  E-value=0.0021  Score=65.51  Aligned_cols=110  Identities=12%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhh
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRR  128 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~  128 (613)
                      ++++.+..||.|+.+|..||+.+.++.....+.+-   ....+...+|+.+..|+.++.+|..+|+. ...+....-+ .
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l---~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~-~   76 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGI---TLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPDP-E   76 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCce---EECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCCc-c
Confidence            56677788999999999999999999754433221   12233335677777899999999998877 3223222212 1


Q ss_pred             CceeecCCc-EEEE-eecceEEEEECCCCcEEEEEec
Q 007199          129 MPYISKDGG-VTLG-AMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       129 sP~~~~dg~-v~~G-s~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      ..+++.||. +|+. +.++.++.+|..+++.+..+..
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~  113 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV  113 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence            233444654 6665 4578999999999998887754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.59  E-value=0.00091  Score=66.17  Aligned_cols=148  Identities=16%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-Hh
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-YI  126 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-~v  126 (613)
                      .++++++.||.|+..|..+++....+... .++..-   ....+ ..+++.++.||.++.+|..+++. ...+.... .+
T Consensus       106 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~-~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i  180 (289)
T cd00200         106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV---AFSPD-GTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEV  180 (289)
T ss_pred             CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE---EEcCc-CCEEEEEcCCCcEEEEEcccccc-ceeEecCcccc
Confidence            55555555999999999999999998732 334332   11111 24556666699999999987776 44444332 22


Q ss_pred             hhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCC-CCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          127 RRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDF-SASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       127 ~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                       .+..+..|+ .+++|+.++.++..|..+|+.+..+.... .+. .         .        ...        .++.+
T Consensus       181 -~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~---------~--------~~~--------~~~~~  233 (289)
T cd00200         181 -NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN-S---------V--------AFS--------PDGYL  233 (289)
T ss_pred             -ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceE-E---------E--------EEc--------CCCcE
Confidence             233445565 68889989999999999999988874221 111 0         0        011        11344


Q ss_pred             EEEee-eeEEEEEeCCCCceEEEEE
Q 007199          205 YIMRT-DYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       205 ~igr~-d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +++.. |+.|+.+|..+++....+.
T Consensus       234 ~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         234 LASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             EEEEcCCCcEEEEEcCCceeEEEcc
Confidence            55444 9999999998887776665

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.57  E-value=0.0009  Score=63.41  Aligned_cols=125  Identities=16%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             EeeeEeecCceEEEEEEeeCCcEEEEEE-eecc----------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          477 FNKEIAKGSNGTVVLEGNYEGRSVAVKR-LVKT----------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       477 ~~~~LG~G~fG~Vyk~~~~~g~~VAVK~-l~~~----------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ....|-+|+-+.|++ ..+.|+...||. +.+.          ......+|++.|.++ .--.|.-..=++.+...-.|.
T Consensus        11 ~l~likQGAEArv~~-~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~-~~~GI~~P~l~~~D~~~~~i~   88 (229)
T KOG3087|consen   11 SLELIKQGAEARVPR-GSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKC-RALGIPAPRLIFIDTYGGQIY   88 (229)
T ss_pred             cceeeeccceeeEee-eccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHH-HHhCCCCceEEEEecCCCeEE
Confidence            456788999999997 567788888874 3331          123567899888887 444555555556666677789


Q ss_pred             ecCCCc--cHHHHHHHhcCCCccccCCHH--HHHHHHHHHHHHHhcCCceeeccc----eecCCCcCcc
Q 007199          546 LERCTC--SLNDLIYVLSGSFEEQLNAKE--QDSNLLNEVRIRLLPVMENTKDIE----LWKANGHPSA  606 (613)
Q Consensus       546 ~E~~~G--sL~~~L~~~~~~~~~~~~~~~--~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg~Psn  606 (613)
                      |||.+|  ++.+++...-   ......+.  ...+.+-+.+.-||.+.+||.||-    ++.+++.+-+
T Consensus        89 ME~~~g~~~vk~~i~~~~---~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~  154 (229)
T KOG3087|consen   89 MEFIDGASTVKDFILSTM---EDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQIT  154 (229)
T ss_pred             EEeccchhHHHHHHHHHc---cCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCc
Confidence            999998  9999998753   22222222  222222278899999999999987    6666666655

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.51  E-value=0.00021  Score=70.09  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCC--CcceeEEEEEEeCC---EEEEEecCC
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQH--PNIVRWYGVESDQD---FVYLSLERC  549 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~H--pnIV~l~g~~~~~~---~~~LV~E~~  549 (613)
                      +.|+.|.++.||+....+|+.+++|.....    ....+.+|.+++..+ .+  .++.+++.+.....   ..++||||+
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l-~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRAL-AGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHh-hCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            568999999999976655689999987753    245788999888777 44  45677777776543   568999999


Q ss_pred             Cc-cHHH
Q 007199          550 TC-SLND  555 (613)
Q Consensus       550 ~G-sL~~  555 (613)
                      +| +|.+
T Consensus        83 ~G~~l~~   89 (223)
T cd05154          83 DGRVLRD   89 (223)
T ss_pred             CCEecCC
Confidence            96 5544

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.50  E-value=0.00043  Score=70.99  Aligned_cols=127  Identities=18%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             EEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec------cchHHHHHHHHHHHhcCC---------CCcceeEEEEEE-
Q 007199          475 VVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK------THHDVALKEIQNLIASDQ---------HPNIVRWYGVES-  537 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~---------HpnIV~l~g~~~-  537 (613)
                      +...+.||.|+++.||.+ +..+|+.+|||....      ...+.+.+|.-....+..         |-.++-.++... 
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            677889999999999997 578899999998764      123355555533322111         212222222221 


Q ss_pred             --------eC---C-----EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH-----HHHHHHhcCCceeeccc
Q 007199          538 --------DQ---D-----FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN-----EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 --------~~---~-----~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~-----~~l~~Lh~~~iiHrDlK  596 (613)
                              ..   .     ..+++|+-+.+||.+++..-... ..........+++.+     ..+.+||..+++|.|||
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~-~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSR-AQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHH-TTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             cCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhc-ccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence                    11   1     24788888889988886542100 111222334443333     77889999999988887


Q ss_pred             ----eecCCC
Q 007199          597 ----LWKANG  602 (613)
Q Consensus       597 ----llh~dg  602 (613)
                          |+.+||
T Consensus       173 ~~nfll~~~G  182 (288)
T PF14531_consen  173 PENFLLDQDG  182 (288)
T ss_dssp             GGGEEE-TTS
T ss_pred             eeeEEEcCCC
Confidence                666665

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.37  E-value=3.7e-05  Score=84.28  Aligned_cols=117  Identities=21%  Similarity=0.126  Sum_probs=84.2

Q ss_pred             eEeecCceEEEEE----EeeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          480 EIAKGSNGTVVLE----GNYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       480 ~LG~G~fG~Vyk~----~~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      ++|+|+||.|+++    +...|..+|+|.+++..     ......|..++....+||.+|+++-.++.+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            3799999999984    35567778999887621     11333455566666569999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                       |+|...+....      .+.+.....+..   .++.++|+.+|+|||+|    ++..+|
T Consensus        81 gg~lft~l~~~~------~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~G  134 (612)
T KOG0603|consen   81 GGDLFTRLSKEV------MFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEG  134 (612)
T ss_pred             cchhhhccccCC------chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccC
Confidence             59988776432      222222222222   68899999999999986    555555

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.36  E-value=0.01  Score=60.43  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=96.3

Q ss_pred             CCCEEEEEecCC-cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeecccHHH
Q 007199           47 EPDVALVAALDG-TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG-~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~~~  124 (613)
                      .+..+++++.++ .++.+|..+++.......+....+.   ....+...+++.+..||.++.+|..+|+. ..+.+..+.
T Consensus       125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~  201 (300)
T TIGR03866       125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA---EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG  201 (300)
T ss_pred             CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE---EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc
Confidence            556677777665 4677788888887765443322111   12333334666666799999999998875 334443221


Q ss_pred             ----Hhh-hCceeecCCc-EEEE-eecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccc
Q 007199          125 ----YIR-RMPYISKDGG-VTLG-AMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNL  197 (613)
Q Consensus       125 ----~v~-~sP~~~~dg~-v~~G-s~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (613)
                          .+. ....++.||. +|++ ..+++++.+|.++|+++.....+....            +      -.++|     
T Consensus       202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~------------~------~~~~~-----  258 (300)
T TIGR03866       202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVW------------Q------LAFTP-----  258 (300)
T ss_pred             cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcc------------e------EEECC-----
Confidence                111 1223455665 4654 445679999999999986654332211            0      01111     


Q ss_pred             cccccEEEEE-eeeeEEEEEeCCCCceEEEEEec
Q 007199          198 KRIRQLVYIM-RTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       198 ~~~~~~v~ig-r~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                        .+..||++ +.++.|..+|.++|+.+..+.++
T Consensus       259 --~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       259 --DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             --CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence              13377876 56899999999999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.27  E-value=0.00094  Score=74.10  Aligned_cols=120  Identities=20%  Similarity=0.082  Sum_probs=77.3

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeeccch---------------------------------H----------HHHH
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHH---------------------------------D----------VALK  515 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~---------------------------------~----------~~~~  515 (613)
                      +.|+.++-|+||+|...+|+.||||+.++.-.                                 +          ++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            67999999999999999999999998876200                                 0          2345


Q ss_pred             HHHHHHhc---C-CCCcceeEEEEEEeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHH-HHHHHHhcCC
Q 007199          516 EIQNLIAS---D-QHPNIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN-EVRIRLLPVM  589 (613)
Q Consensus       516 Ei~~L~~l---~-~HpnIV~l~g~~~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~-~~l~~Lh~~~  589 (613)
                      |...+.++   . ..+++.-..=|+.......|+|||++| .+.+.....     ........+..... ..+.++-..+
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~-----~~g~d~k~ia~~~~~~f~~q~~~dg  285 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALK-----SAGIDRKELAELLVRAFLRQLLRDG  285 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHH-----hcCCCHHHHHHHHHHHHHHHHHhcC
Confidence            55555443   2 234433333333345677899999999 777774322     12333333333333 6677776655


Q ss_pred             ceeeccceecCCCcCcceeee
Q 007199          590 ENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       590 iiHrDlKllh~dg~PsniLlk  610 (613)
                      +       .|.|-||-||++.
T Consensus       286 f-------fHaDpHpGNi~v~  299 (517)
T COG0661         286 F-------FHADPHPGNILVR  299 (517)
T ss_pred             c-------cccCCCccceEEe
Confidence            5       6788899998874

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.11  E-value=0.0095  Score=60.90  Aligned_cols=102  Identities=13%  Similarity=-0.007  Sum_probs=63.5

Q ss_pred             eeCCcEEEEEEeeccc--------------hHHHHHHHHHHHhcCCCC--cceeEEEEEEe-----CCEEEEEecCCCc-
Q 007199          494 NYEGRSVAVKRLVKTH--------------HDVALKEIQNLIASDQHP--NIVRWYGVESD-----QDFVYLSLERCTC-  551 (613)
Q Consensus       494 ~~~g~~VAVK~l~~~~--------------~~~~~~Ei~~L~~l~~Hp--nIV~l~g~~~~-----~~~~~LV~E~~~G-  551 (613)
                      ...|+.+.||+.....              ...+.+|.+.+.++ ...  ..+++.++...     ...-+||||+++| 
T Consensus        42 ~~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L-~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~  120 (268)
T PRK15123         42 ELAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRL-HEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPT  120 (268)
T ss_pred             EECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHH-HHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCC
Confidence            4466778888654321              11477888888776 222  23344455543     2357899999997 


Q ss_pred             -cHHHHHHHhcCCCccccCCHH---HHHHHHHHHHHHHhcCCceeeccc----eecC
Q 007199          552 -SLNDLIYVLSGSFEEQLNAKE---QDSNLLNEVRIRLLPVMENTKDIE----LWKA  600 (613)
Q Consensus       552 -sL~~~L~~~~~~~~~~~~~~~---~~~~~~~~~l~~Lh~~~iiHrDlK----llh~  600 (613)
                       +|.+++....    .......   .+.+.+...+..||..+++|+|++    |++.
T Consensus       121 ~sL~~~~~~~~----~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~  173 (268)
T PRK15123        121 ISLEDYCADWA----TNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHL  173 (268)
T ss_pred             ccHHHHHHhhc----ccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEec
Confidence             8999986421    1111122   333334488899999999999998    5654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.11  E-value=0.0041  Score=60.73  Aligned_cols=194  Identities=15%  Similarity=0.141  Sum_probs=112.0

Q ss_pred             CCCCEEEEEecCCcEEEEeCC---CCee-------eEEee-CCCceeeccccccCCCCCeEEEecCCCCeEEEEecC---
Q 007199           46 PEPDVALVAALDGTIHLVDTK---LGKI-------RWSFG-TGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKR---  111 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~---tG~~-------~W~~~-~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~---  111 (613)
                      +....+++|+.+|.|-.+..+   +|+.       +-.+. -++|+|.-  +.    ++.+.+.++ ||.+|.+.=+   
T Consensus        20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~--~f----~d~~Lls~g-dG~V~gw~W~E~~   92 (325)
T KOG0649|consen   20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYL--AF----HDDFLLSGG-DGLVYGWEWNEEE   92 (325)
T ss_pred             CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeee--ee----ehhheeecc-CceEEEeeehhhh
Confidence            345779999999998665322   2322       11111 13344332  11    134556666 8999997531   


Q ss_pred             --CCceeeecccHHHHhhhCcee-------e-cCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccc
Q 007199          112 --FGKMKKLSSSAEEYIRRMPYI-------S-KDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVV  181 (613)
Q Consensus       112 --~G~l~~~~~~~~~~v~~sP~~-------~-~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (613)
                        .+....|...++.-+.++|+=       . .++.|++.+-|+.+|.+|.++|++..+|..-...              
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY--------------  158 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY--------------  158 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce--------------
Confidence              222235666666665554431       1 2455676669999999999999999999743211              


Q ss_pred             cCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEeceeeeeecccccCCCcccccccCCCccccccc
Q 007199          182 PVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQEVGKSFSGYHFNSGSELGMDLI  261 (613)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~a~~~~~~~~~~~~~~~~~s~~~~~~~~~  261 (613)
                           ..++...     ..++.|+-|.-|++++.+|.++++..-.+-..+-.. ++.++..+            |-.++.
T Consensus       159 -----vH~vv~R-----~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~-~lRp~~g~------------wigala  215 (325)
T KOG0649|consen  159 -----VHSVVGR-----NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN-LLRPDWGK------------WIGALA  215 (325)
T ss_pred             -----eeeeeec-----ccCcceeecCCCccEEEEeccccceeEEeccccChh-hcCcccCc------------eeEEEe
Confidence                 1111111     124578999999999999999999876655444332 22222221            000110


Q ss_pred             CcccccccccccccceEEeeccC
Q 007199          262 GDVESHLPCHTQMTASVYRLRDN  284 (613)
Q Consensus       262 g~~~~~~~~~~~~~~~~~~~~~n  284 (613)
                      ++ +.=+.|..-+++.-|||+.-
T Consensus       216 ~~-edWlvCGgGp~lslwhLrss  237 (325)
T KOG0649|consen  216 VN-EDWLVCGGGPKLSLWHLRSS  237 (325)
T ss_pred             cc-CceEEecCCCceeEEeccCC
Confidence            11 23355655677778888864

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.06  E-value=0.0015  Score=72.35  Aligned_cols=118  Identities=20%  Similarity=0.135  Sum_probs=75.3

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccch------------------------------H----------HHHHHH
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHH------------------------------D----------VALKEI  517 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~------------------------------~----------~~~~Ei  517 (613)
                      .+.||.-+.|+||+|.+.+|+.||||+-++.-.                              +          +|.+|.
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            467999999999999999999999998765100                              0          245565


Q ss_pred             HHHHhc---CCCCc------ceeEEEEEEeCCEEEEEecCCCc-cHH--HHHHHhcCCCccccCCHHHHHHHHHHHHHHH
Q 007199          518 QNLIAS---DQHPN------IVRWYGVESDQDFVYLSLERCTC-SLN--DLIYVLSGSFEEQLNAKEQDSNLLNEVRIRL  585 (613)
Q Consensus       518 ~~L~~l---~~Hpn------IV~l~g~~~~~~~~~LV~E~~~G-sL~--~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L  585 (613)
                      +...+.   ..|-+      |.+++..+  .....|+||||+| .+.  +.|...      +.-+.+....+...++++|
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~--st~RVLtME~~~G~~i~Dl~~i~~~------gi~~~~i~~~l~~~~~~qI  317 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDL--STKRVLTMEYVDGIKINDLDAIDKR------GISPHDILNKLVEAYLEQI  317 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhc--CcceEEEEEecCCccCCCHHHHHHc------CCCHHHHHHHHHHHHHHHH
Confidence            544332   35555      44444333  3467899999997 333  445432      2223344444444677777


Q ss_pred             hcCCceeeccceecCCCcCcceeee
Q 007199          586 LPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       586 h~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      ...+.       +|.|=||-||+++
T Consensus       318 f~~Gf-------fHaDPHPGNilv~  335 (538)
T KOG1235|consen  318 FKTGF-------FHADPHPGNILVR  335 (538)
T ss_pred             HhcCC-------ccCCCCCCcEEEe
Confidence            77666       5666777777775

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.04  E-value=0.004  Score=59.29  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=70.6

Q ss_pred             eEeecCceEEEEEEeeCCcEEEEE-Eeecc----------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          480 EIAKGSNGTVVLEGNYEGRSVAVK-RLVKT----------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       480 ~LG~G~fG~Vyk~~~~~g~~VAVK-~l~~~----------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .+++|+-+.+|.+ .+-|..+.+| ++++.          ..+...+|.++|.++ +--.|....=++.+.+...|+|||
T Consensus         3 ~i~~GAEa~i~~~-~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a-~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           3 LIKQGAEAIIYLT-DFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKA-REAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             hhhCCcceeEEee-eccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCeEEEEcCCCCEEEEEE
Confidence            5678999999985 3445566777 34431          122567899888777 544555555566778888999999


Q ss_pred             CCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++| .|.++|...         .. -..+-+=..+.-||..+|+|.|+-
T Consensus        81 I~G~~lkd~l~~~---------~~-~~~r~vG~~vg~lH~~givHGDLT  119 (204)
T COG3642          81 IEGELLKDALEEA---------RP-DLLREVGRLVGKLHKAGIVHGDLT  119 (204)
T ss_pred             eCChhHHHHHHhc---------ch-HHHHHHHHHHHHHHhcCeecCCCc
Confidence            998 777788752         11 122222256788999999877664

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.03  E-value=0.0018  Score=72.01  Aligned_cols=102  Identities=17%  Similarity=0.198  Sum_probs=76.1

Q ss_pred             EeeCCcEEEEEEeeccch---HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCccHHHHHHHhcCCCccccC
Q 007199          493 GNYEGRSVAVKRLVKTHH---DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLN  569 (613)
Q Consensus       493 ~~~~g~~VAVK~l~~~~~---~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~  569 (613)
                      .+.++.+|.|...+....   +...+-++.|+.+ +||||++++..+...+.+|||+|.+.. |..+++..      ...
T Consensus        33 ~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtl-RHP~Il~yL~t~e~~~~~ylvTErV~P-l~~~lk~l------~~~  104 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTL-RHPNILSYLDTTEEEGTLYLVTERVRP-LETVLKEL------GKE  104 (690)
T ss_pred             eeccCCceEEEEEeCCCchhhHHHHHHHHHhhhc-cCchhhhhhhhhcccCceEEEeecccc-HHHHHHHh------HHH
Confidence            467788888888876433   4566777788777 999999999999999999999998873 33334432      123


Q ss_pred             CHHHHHHHHHHHHHHHh-cCCceeeccc----eecCCC
Q 007199          570 AKEQDSNLLNEVRIRLL-PVMENTKDIE----LWKANG  602 (613)
Q Consensus       570 ~~~~~~~~~~~~l~~Lh-~~~iiHrDlK----llh~dg  602 (613)
                      -..|-...+..||.+|| +.+++|.++-    |+...|
T Consensus       105 ~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~G  142 (690)
T KOG1243|consen  105 EVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESG  142 (690)
T ss_pred             HHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCC
Confidence            34566666678999996 7789998887    666655

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.02  E-value=0.011  Score=58.15  Aligned_cols=112  Identities=18%  Similarity=0.154  Sum_probs=83.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .+.+++-++.|++|+.-|.+||++.=++.+..|+.|-   ...++  .-||.-..-+++-.+|+++=.+ .-.+.++--|
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSl---Evs~d--G~ilTia~gssV~Fwdaksf~~-lKs~k~P~nV  227 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSL---EVSQD--GRILTIAYGSSVKFWDAKSFGL-LKSYKMPCNV  227 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcce---eeccC--CCEEEEecCceeEEeccccccc-eeeccCcccc
Confidence            7788888899999999999999999999999988765   22333  2455555577888889866444 3455565556


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      .++-+--+.+..+.|+.|..+|..|-.||+.+-.|..+
T Consensus       228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg  265 (334)
T KOG0278|consen  228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG  265 (334)
T ss_pred             ccccccCCCceEEecCcceEEEEEeccCCceeeecccC
Confidence            56544443454446999999999999999999887443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.00  E-value=0.012  Score=69.60  Aligned_cols=157  Identities=10%  Similarity=0.065  Sum_probs=98.8

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-HH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-EY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~~  125 (613)
                      .++.++.|+.||+|+..|..+|+..-++.....+..-   .........++.++.||.++.+|..+++.....+... ..
T Consensus       587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v---~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~  663 (793)
T PLN00181        587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV---QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT  663 (793)
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE---EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence            3467888999999999999999888777655444432   1111123467778889999999998765311111111 12


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCC------cEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSG------RVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                      |.. -.+.++..+++|+.|+++...|..++      +.+..+..-....         . .       -.+++       
T Consensus       664 V~~-v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------~-~-------v~~s~-------  718 (793)
T PLN00181        664 VSY-VRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------N-F-------VGLSV-------  718 (793)
T ss_pred             EEE-EEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------e-E-------EEEcC-------
Confidence            211 12233456778999999999998754      3444443111000         0 0       01111       


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .+..|..|..|+.|+.++..++.+.|.+++.-
T Consensus       719 ~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence            13478889999999999999888888876643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.92  E-value=0.019  Score=59.13  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=104.6

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCeeeEEeeCC--CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc--c
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKIRWSFGTG--RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS--S  121 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~--~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~--~  121 (613)
                      +..+++..|.-|-.=|.-|..||+..-.. +|  ..|...   .+.-+. .+..-+..||.|..+...+|.. +|++  +
T Consensus        74 P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~---~Fshdg-tlLATGdmsG~v~v~~~stg~~-~~~~~~e  147 (399)
T KOG0296|consen   74 PNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCC---SFSHDG-TLLATGDMSGKVLVFKVSTGGE-QWKLDQE  147 (399)
T ss_pred             CCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEE---EEccCc-eEEEecCCCccEEEEEcccCce-EEEeecc
Confidence            35566777777777777777777733333 22  123221   122221 3555566899999999999999 8888  6


Q ss_pred             HHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          122 AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      +.+++...=.-. --++.+|++|++++.-.+.++.....|....    +|+...   .+.|                 ..
T Consensus       148 ~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~----~~ct~G---~f~p-----------------dG  202 (399)
T KOG0296|consen  148 VEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHN----SPCTCG---EFIP-----------------DG  202 (399)
T ss_pred             cCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCC----CCcccc---cccC-----------------CC
Confidence            777666533322 3467899999999999999887777775422    221111   1111                 13


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .+++-|-.|++|.++|+++|.+.-.++-+|
T Consensus       203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e  232 (399)
T KOG0296|consen  203 KRILTGYDDGTIIVWNPKTGQPLHKITQAE  232 (399)
T ss_pred             ceEEEEecCceEEEEecCCCceeEEecccc
Confidence            488999999999999999999999888777

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.86  E-value=0.0036  Score=60.89  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCC--eeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLG--KIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG--~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      +..+|+-|++|-++++-|-++-  +++=.+.+-.--+++     .+.+++-++.|+.||++-.+|.+.|.+  ..-.+++
T Consensus       112 esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S-----i~v~~heIvaGS~DGtvRtydiR~G~l--~sDy~g~  184 (307)
T KOG0316|consen  112 ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS-----IDVAEHEIVAGSVDGTVRTYDIRKGTL--SSDYFGH  184 (307)
T ss_pred             cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE-----EEecccEEEeeccCCcEEEEEeeccee--ehhhcCC
Confidence            3367888999999999996653  333333221111111     111245789999999999999999988  1222333


Q ss_pred             HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      +| .+-.++.||. +.+|+-++++..||..||+++..|..-....   .-.+    .|.        .       ..+..
T Consensus       185 pi-t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e---ykld----c~l--------~-------qsdth  241 (307)
T KOG0316|consen  185 PI-TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME---YKLD----CCL--------N-------QSDTH  241 (307)
T ss_pred             cc-eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce---eeee----eee--------c-------cccee
Confidence            34 2344677775 5689999999999999999999886432210   0000    111        0       12447


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      |+=|+-|+.||-+|-.++..+=.+.+
T Consensus       242 V~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             EEeccCCceEEEEEeccceeeeeecc
Confidence            77799999999999888776655443

>PRK09902 hypothetical protein; Provisional

Probab=96.85  E-value=0.022  Score=55.82  Aligned_cols=123  Identities=13%  Similarity=0.046  Sum_probs=78.0

Q ss_pred             eecCceEEEEEEeeCCcEEEEEEee---------ccchHHHHHHHHHHHhcCCC-CcceeEEEEEEeC----CEEEEEec
Q 007199          482 AKGSNGTVVLEGNYEGRSVAVKRLV---------KTHHDVALKEIQNLIASDQH-PNIVRWYGVESDQ----DFVYLSLE  547 (613)
Q Consensus       482 G~G~fG~Vyk~~~~~g~~VAVK~l~---------~~~~~~~~~Ei~~L~~l~~H-pnIV~l~g~~~~~----~~~~LV~E  547 (613)
                      |+|+-+.|+. ...+|..+=+|+-.         +.....|.+|...|.++-.. -.+.++..+....    -.-+||+|
T Consensus        27 ~rgG~SgV~r-~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVTe  105 (216)
T PRK09902         27 RRNGMSGVQC-VERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTE  105 (216)
T ss_pred             CCCCcceEEE-EEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEEE
Confidence            4577777776 33445567778665         23456899999988887221 2244554222222    24789999


Q ss_pred             CCCc--cHHHHHHHhcCCCccccCCH---HHHHHHHHHHHHHHhcCCceeeccc----eecCCCcCcceee
Q 007199          548 RCTC--SLNDLIYVLSGSFEEQLNAK---EQDSNLLNEVRIRLLPVMENTKDIE----LWKANGHPSAQLL  609 (613)
Q Consensus       548 ~~~G--sL~~~L~~~~~~~~~~~~~~---~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg~PsniLl  609 (613)
                      -++|  ||.+++....    ....+.   ..+...+...+..||..++.|+|+.    +++.+++++=-+|
T Consensus       106 ~L~g~~~L~~~l~~~~----~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lI  172 (216)
T PRK09902        106 DMAGFISIADWYAQHA----VSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFL  172 (216)
T ss_pred             eCCCCccHHHHHhcCC----cCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEE
Confidence            9986  9999986531    111122   2333334488999999999999998    6676675544444

>PTZ00421 coronin; Provisional

Probab=96.65  E-value=0.043  Score=61.09  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=71.8

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCee-------eEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKI-------RWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL  118 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~-------~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~  118 (613)
                      .++.++.|+.||+|+.-|..++..       +-++.. ..+|..-   ....+...+++.++.||.+..+|..+|.. .-
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l---~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~  162 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV---SFHPSAMNVLASAGADMVVNVWDVERGKA-VE  162 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEE---EeCcCCCCEEEEEeCCCEEEEEECCCCeE-EE
Confidence            346888999999999998776532       223321 1122211   11111124677778899999999998876 33


Q ss_pred             cccHH-HHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEec
Q 007199          119 SSSAE-EYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       119 ~~~~~-~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      .+... +.|.+ -..+.||. +++|++|+++...|+.+|+.+..+..
T Consensus       163 ~l~~h~~~V~s-la~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~  208 (493)
T PTZ00421        163 VIKCHSDQITS-LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA  208 (493)
T ss_pred             EEcCCCCceEE-EEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec
Confidence            33321 22222 22334664 56799999999999999999887753

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.63  E-value=0.029  Score=62.35  Aligned_cols=175  Identities=13%  Similarity=0.063  Sum_probs=83.5

Q ss_pred             CCCCEEEEEe----cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc
Q 007199           46 PEPDVALVAA----LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        46 ~~~~~v~v~t----~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      ..+++.++..    ..+..|++|. +|.++|.+.....-... ...+..  ..++ ... ...++.+|.- |++ .|.++
T Consensus       112 ~~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~-~~~l~n--G~ll-~~~-~~~~~e~D~~-G~v-~~~~~  183 (477)
T PF05935_consen  112 MEDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNS-FKQLPN--GNLL-IGS-GNRLYEIDLL-GKV-IWEYD  183 (477)
T ss_dssp             -TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SS-EEE-TT--S-EE-EEE-BTEEEEE-TT---E-EEEEE
T ss_pred             cCCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccce-eeEcCC--CCEE-Eec-CCceEEEcCC-CCE-EEeee
Confidence            4667777776    6789999995 59999999654332211 000111  1233 333 3888899886 888 88888


Q ss_pred             HHH---HhhhCceeecCCcEEE-Eee-------------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCC
Q 007199          122 AEE---YIRRMPYISKDGGVTL-GAM-------------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVD  184 (613)
Q Consensus       122 ~~~---~v~~sP~~~~dg~v~~-Gs~-------------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (613)
                      ++.   .++..-....+|.+++ +..             .+.++.|| .||+++|.++..+-..................
T Consensus       184 l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~  262 (477)
T PF05935_consen  184 LPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS  262 (477)
T ss_dssp             --TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred             cCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccc
Confidence            887   3355555555765554 442             56799999 99999999997654310000000000000000


Q ss_pred             Ccccccccccccccc---cccEEEE-EeeeeEEEEEeCCCCceEEEEEe
Q 007199          185 GYEELVESGVGNLKR---IRQLVYI-MRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       185 ~~~~~~~~~~~~~~~---~~~~v~i-gr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      +.....+....+.-.   .++.|++ .|....|..+|.++|+..|-+.-
T Consensus       263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~  311 (477)
T PF05935_consen  263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP  311 (477)
T ss_dssp             -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred             cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence            001111222222111   2445555 55555899999999999998754

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PTZ00420 coronin; Provisional

Probab=96.60  E-value=0.057  Score=60.88  Aligned_cols=143  Identities=11%  Similarity=0.082  Sum_probs=87.9

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhC
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRM  129 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~s  129 (613)
                      ++..|+.||+|...|..+|+..+++.....|.+-   ....++ .+++.++.|+.+..+|.++|.. .-.+...+-...+
T Consensus       140 iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Sl---swspdG-~lLat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s  214 (568)
T PTZ00420        140 IMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSL---KWNIKG-NLLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNT  214 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEE---EECCCC-CEEEEEecCCEEEEEECCCCcE-EEEEecccCCcee
Confidence            3456789999999999999999998765566543   122222 4666677799999999999877 3334332211111


Q ss_pred             cee------ecCCcEEEEeecc----eEEEEECCC-CcEEEEEecCCCCCC-CCCcCCCCCccccCCCcccccccccccc
Q 007199          130 PYI------SKDGGVTLGAMKT----SVFLVDVKS-GRVVDNYVLDFSAST-PGFQSDENKHVVPVDGYEELVESGVGNL  197 (613)
Q Consensus       130 P~~------~~dg~v~~Gs~~~----~~~~vD~~t-G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (613)
                      -++      .+++.+.+++.++    ++..-|..+ ++.+..+..+..... .|.++.                      
T Consensus       215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~----------------------  272 (568)
T PTZ00420        215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE----------------------  272 (568)
T ss_pred             EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC----------------------
Confidence            111      2234556655553    688888884 677766654332110 111110                      


Q ss_pred             ccccc-EEEEEeeeeEEEEEeCCCC
Q 007199          198 KRIRQ-LVYIMRTDYVLQSTSQDSG  221 (613)
Q Consensus       198 ~~~~~-~v~igr~d~~l~a~d~~~G  221 (613)
                        ..+ .+..|+.|++|+.++-.+|
T Consensus       273 --~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        273 --STGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             --CCCCEEEEEECCCeEEEEEccCC
Confidence              122 4456889999999998766

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.55  E-value=0.0072  Score=58.38  Aligned_cols=100  Identities=19%  Similarity=0.054  Sum_probs=55.8

Q ss_pred             EEEEEEeeCCcEEEEEEeecc---------------c--------------hHHHHHHHHHHHhcCCC-CcceeEEEEEE
Q 007199          488 TVVLEGNYEGRSVAVKRLVKT---------------H--------------HDVALKEIQNLIASDQH-PNIVRWYGVES  537 (613)
Q Consensus       488 ~Vyk~~~~~g~~VAVK~l~~~---------------~--------------~~~~~~Ei~~L~~l~~H-pnIV~l~g~~~  537 (613)
                      .||.|...+|..+|||..+..               .              .....+|.+.|.++... -++.+++.+. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            388887788999999977631               0              11467899999888332 2567776543 


Q ss_pred             eCCEEEEEecCCC--c-cHHHHHHHhcCCCccccCCHHHHHHHHHH-HHHHHhcCCceeeccc
Q 007199          538 DQDFVYLSLERCT--C-SLNDLIYVLSGSFEEQLNAKEQDSNLLNE-VRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 ~~~~~~LV~E~~~--G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~-~l~~Lh~~~iiHrDlK  596 (613)
                         .-.|||||++  | .+..+....    .. ......+...++. ...-+|..+++|.|+.
T Consensus        80 ---~~~ivME~I~~~G~~~~~l~~~~----~~-~~~~~~~~~~il~~~~~~~~~~givHGDLs  134 (188)
T PF01163_consen   80 ---RNVIVMEYIGEDGVPLPRLKDVD----LS-PEEPKELLEEILEEIIKMLHKAGIVHGDLS  134 (188)
T ss_dssp             ---TTEEEEE--EETTEEGGCHHHCG----GG-GSTHHHHHHHHHHHHHHHHHCTTEEESS-S
T ss_pred             ---CCEEEEEecCCCccchhhHHhcc----cc-chhHHHHHHHHHHHHHHHHHhcCceecCCC
Confidence               2369999999  7 444433321    01 1222223333333 4445689999887776

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.55  E-value=0.096  Score=56.77  Aligned_cols=112  Identities=15%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             CCCCCCCEEEEEecCC---cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCC--eEEEEecCCCceee
Q 007199           43 PLPPEPDVALVAALDG---TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDW--ELYFHSKRFGKMKK  117 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG---~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG--~lY~~~~~~G~l~~  117 (613)
                      ..++.+..+++.+.++   .||.+|..+|+..-.....+...+.   ....++..+++....+|  .||.++..+|..++
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~---~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAP---AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccce---EECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence            3445666676666543   7999999999765433222222221   12233334555444444  59999999887755


Q ss_pred             ecccHHHHhhhCceeecCCc-EEEEeec---ceEEEEECCCCcEEE
Q 007199          118 LSSSAEEYIRRMPYISKDGG-VTLGAMK---TSVFLVDVKSGRVVD  159 (613)
Q Consensus       118 ~~~~~~~~v~~sP~~~~dg~-v~~Gs~~---~~~~~vD~~tG~~~~  159 (613)
                      +.-  ......+|..+.||. +++.+..   ..+|.+|+.+|+...
T Consensus       273 l~~--~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~  316 (417)
T TIGR02800       273 LTN--GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR  316 (417)
T ss_pred             CCC--CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            432  223345677776774 5555432   269999999888653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.53  E-value=0.0066  Score=59.08  Aligned_cols=113  Identities=20%  Similarity=0.211  Sum_probs=85.3

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc----c
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS----S  121 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~----~  121 (613)
                      +.+..++.|+.||+++-.|.+-|++-=-+ .+.||.+-...  ++.  ...+.++.|+.|..+|..||++ .-.|    +
T Consensus       153 v~~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s--~d~--nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn  226 (307)
T KOG0316|consen  153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFS--KDG--NCSLASSLDSTLRLLDKETGKL-LKSYKGHKN  226 (307)
T ss_pred             ecccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEec--CCC--CEEEEeeccceeeecccchhHH-HHHhccccc
Confidence            47788999999999999999999987665 57788765211  222  3667788899999999999988 2222    2


Q ss_pred             HHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCC
Q 007199          122 AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      ++--+..+-..+ |-.|+-||.|+.+|.-|...+.++-++...+
T Consensus       227 ~eykldc~l~qs-dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~  269 (307)
T KOG0316|consen  227 MEYKLDCCLNQS-DTHVFSGSEDGKVYFWDLVDETQISKLSVVS  269 (307)
T ss_pred             ceeeeeeeeccc-ceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence            222233443344 7779999999999999999999999887654

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.44  E-value=0.0018  Score=71.09  Aligned_cols=122  Identities=18%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             EEEeeeEee--cCceEEEEEE---eeCCcEEEEEEeec--c---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          475 VVFNKEIAK--GSNGTVVLEG---NYEGRSVAVKRLVK--T---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       475 ~~~~~~LG~--G~fG~Vyk~~---~~~g~~VAVK~l~~--~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +...+.+|+  |.+|.||.+.   ..++..+|+|+-+.  .   ....-.+|....++...|+|.++.+..+...+..|+
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCccee
Confidence            566778899  9999999953   57788899997332  1   122344566666667789999999999999999999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---H----HHHHHhcCCceeeccc----eecCC
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---E----VRIRLLPVMENTKDIE----LWKAN  601 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~----~l~~Lh~~~iiHrDlK----llh~d  601 (613)
                      -+|+|..+|.++.+...     ..++.......+.   +    |+.++|...++|-|+|    +++.|
T Consensus       196 qtE~~~~sl~~~~~~~~-----~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~  258 (524)
T KOG0601|consen  196 QTELCGESLQSYCHTPC-----NFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSD  258 (524)
T ss_pred             eeccccchhHHhhhccc-----ccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccc
Confidence            99999999999988632     2222222222222   5    9999999999999998    66666

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.43  E-value=0.16  Score=53.78  Aligned_cols=115  Identities=11%  Similarity=-0.001  Sum_probs=84.4

Q ss_pred             CCCEEEEEecC-----CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecC---------CCCeEEEEecCC
Q 007199           47 EPDVALVAALD-----GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD---------EDWELYFHSKRF  112 (613)
Q Consensus        47 ~~~~v~v~t~d-----G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~---------~DG~lY~~~~~~  112 (613)
                      ....+||.+..     |+||.+|..+++++=++++|..=..-    +..|+..+|+..+         ++..|=.+|..+
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~----~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t   86 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV----VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT   86 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee----ECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence            45678888876     99999999999999999886421111    2334457899999         999999999999


Q ss_pred             CceeeecccHH----HHhhhCc---eeecCC-cEEEEe-e-cceEEEEECCCCcEEEEEecCCC
Q 007199          113 GKMKKLSSSAE----EYIRRMP---YISKDG-GVTLGA-M-KTSVFLVDVKSGRVVDNYVLDFS  166 (613)
Q Consensus       113 G~l~~~~~~~~----~~v~~sP---~~~~dg-~v~~Gs-~-~~~~~~vD~~tG~~~~~~~~~~~  166 (613)
                      ++. .....++    .++-..|   .++.|| .+|+.. . +..+-.||..+|+++.+...+++
T Consensus        87 ~~~-~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~  149 (352)
T TIGR02658        87 HLP-IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC  149 (352)
T ss_pred             CcE-EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC
Confidence            988 4333332    1122222   245677 488876 3 68999999999999999988764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.41  E-value=0.052  Score=53.94  Aligned_cols=122  Identities=21%  Similarity=0.179  Sum_probs=85.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccc--------------------------c--cc---CCC----
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQ--------------------------A--SF---NSN----   91 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~--------------------------~--~~---~~~----   91 (613)
                      ....++.|+.|-++..-|-+||+++-+++++.|+....-                          .  +.   ..+    
T Consensus        63 ~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   63 DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            456788899999999999999999999998887554310                          0  00   000    


Q ss_pred             ---------------CCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCceeecCCcEE-EEeecceEEEEECCCC
Q 007199           92 ---------------ASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVT-LGAMKTSVFLVDVKSG  155 (613)
Q Consensus        92 ---------------~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~v~-~Gs~~~~~~~vD~~tG  155 (613)
                                     .+..+|-|-.||+|-.+|+++|.+..-.-....---..-..+.|...| +||+|++-..+|-.|=
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence                           024567777899999999999866222222221111122345577677 5999999999999999


Q ss_pred             cEEEEEecCCCCC
Q 007199          156 RVVDNYVLDFSAS  168 (613)
Q Consensus       156 ~~~~~~~~~~~~~  168 (613)
                      +++.+|.++.+..
T Consensus       223 ~v~Kty~te~PvN  235 (327)
T KOG0643|consen  223 EVLKTYTTERPVN  235 (327)
T ss_pred             eeEEEeeeccccc
Confidence            9999999987754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=96.27  E-value=0.012  Score=57.67  Aligned_cols=113  Identities=16%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CCEEEEEecCCcEEEEe------CCCCeeeEEeeCCCceee-ccccc------cCCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           48 PDVALVAALDGTIHLVD------TKLGKIRWSFGTGRPIYS-SYQAS------FNSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald------~~tG~~~W~~~~~~~i~s-~~~~~------~~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      ++.++ +.-||.||+..      ..--|.+|...  .|... +...|      ++...+.++..++ ||-+|++|.++|+
T Consensus        72 d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~--~P~~~~~~evPeINam~ldP~enSi~~AgG-D~~~y~~dlE~G~  147 (325)
T KOG0649|consen   72 DDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVK--IPMQVDAVEVPEINAMWLDPSENSILFAGG-DGVIYQVDLEDGR  147 (325)
T ss_pred             hhhee-eccCceEEEeeehhhhhhccchhhhhhc--CccccCcccCCccceeEeccCCCcEEEecC-CeEEEEEEecCCE
Confidence            34444 56679999984      23346788765  33332 11111      1111135666776 9999999999999


Q ss_pred             eeeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          115 MKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       115 l~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      .++----=-++|++--.+...+.|+.|+.|++.-.-|.+||+-+......
T Consensus       148 i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  148 IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence            95444344467777555667899999999999999999999999877643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.22  E-value=0.044  Score=58.15  Aligned_cols=149  Identities=19%  Similarity=0.132  Sum_probs=101.1

Q ss_pred             CCCEEEEEecCCc--EEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee--ccc
Q 007199           47 EPDVALVAALDGT--IHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL--SSS  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~--l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~--~~~  121 (613)
                      .--+++++.+||+  ||.||.++-..+=++.. +-||...  ...+ ++...++.++.--.+|.+|..++++.++  ++.
T Consensus       224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a--~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g  300 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKA--EFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG  300 (514)
T ss_pred             CCceEEEecCCCcEEEEEecCccChhheeeeeccCcccee--eecC-CCceEEEecccceEEEEeeccccccccccCCCC
Confidence            3467999999995  58889888776666654 4577766  2222 3334677788899999999988876444  455


Q ss_pred             HHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          122 AEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                      .++.....--++.|+ .|-+-+..|.++.|-++||+.+-.|...+.+...                  ++++       .
T Consensus       301 ~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~------------------~fsS-------d  355 (514)
T KOG2055|consen  301 VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDF------------------TFSS-------D  355 (514)
T ss_pred             cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeE------------------EEec-------C
Confidence            554444444455555 4556788899999999999999999988754311                  1111       0


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCce
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~~  223 (613)
                      ...|++-..++.|+.+|-.....
T Consensus       356 sk~l~~~~~~GeV~v~nl~~~~~  378 (514)
T KOG2055|consen  356 SKELLASGGTGEVYVWNLRQNSC  378 (514)
T ss_pred             CcEEEEEcCCceEEEEecCCcce
Confidence            22666666677777777655443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.20  E-value=0.0022  Score=70.38  Aligned_cols=117  Identities=16%  Similarity=0.028  Sum_probs=80.0

Q ss_pred             eEEEeeeEeecCceEEEEEE--eeCCcEEEEEEeeccc---h--HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG--NYEGRSVAVKRLVKTH---H--DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~--~~~g~~VAVK~l~~~~---~--~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.....||.|.|+.|+++.  ..++..+++|.+.+.-   .  ..-..|+.+...+..|.++++++..|...+..|+-.
T Consensus       266 df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~  345 (524)
T KOG0601|consen  266 DFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPL  345 (524)
T ss_pred             CcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCch
Confidence            37788899999999999964  3567889999877521   1  123456655556678999999999998888999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||. +++...+.      -...+.++...++..   .++.++|++.++|+|+|
T Consensus       346 e~~~~~s~~l~~~------~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~  393 (524)
T KOG0601|consen  346 EFCEGGSSSLRSV------TSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVK  393 (524)
T ss_pred             hhhcCcchhhhhH------HHHhcCcchhhhhHHHHHhccccccchhhhccccc
Confidence            9998 55443332      111222333333333   67788887777665554

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.19  E-value=0.049  Score=53.10  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccc-------------------hHHHHHHHHHHHhc-----CCCCcceeEE
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-------------------HDVALKEIQNLIAS-----DQHPNIVRWY  533 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-------------------~~~~~~Ei~~L~~l-----~~HpnIV~l~  533 (613)
                      ...||+|+.=.||.  ..+.....||++....                   .++..+|+.....+     ..+.+|.+++
T Consensus         6 ~~~i~~G~~R~cy~--HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    6 SDLIAQGGERDCYQ--HPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             CcccccCCCceEEE--CCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            45789999999996  3344456788777655                   55677777655444     2478999999


Q ss_pred             EEEEeCCEEEEEecCCC---c----cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcc
Q 007199          534 GVESDQDFVYLSLERCT---C----SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSA  606 (613)
Q Consensus       534 g~~~~~~~~~LV~E~~~---G----sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~Psn  606 (613)
                      |+.+++.-.-+|+|.+.   |    +|.+++...       .+.. .....+.+...+|....|+.+|+       +|+|
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~-------~~~~-~~~~~L~~f~~~l~~~~Iv~~dl-------~~~N  148 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKEG-------GLTE-ELRQALDEFKRYLLDHHIVIRDL-------NPHN  148 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHcC-------CccH-HHHHHHHHHHHHHHHcCCeecCC-------Cccc
Confidence            99999998899999864   4    788888642       2333 44444446777888888866555       5555


Q ss_pred             eeee
Q 007199          607 QLLK  610 (613)
Q Consensus       607 iLlk  610 (613)
                      |++.
T Consensus       149 Iv~~  152 (199)
T PF10707_consen  149 IVVQ  152 (199)
T ss_pred             EEEE
Confidence            5553

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.15  E-value=0.041  Score=53.87  Aligned_cols=89  Identities=16%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcC-CCCcceeEEEEEEeCC----EEEEEecCCCc--cHHHHHHHhcCCCccccCCHHHHHHHHHHHHH
Q 007199          511 DVALKEIQNLIASD-QHPNIVRWYGVESDQD----FVYLSLERCTC--SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRI  583 (613)
Q Consensus       511 ~~~~~Ei~~L~~l~-~HpnIV~l~g~~~~~~----~~~LV~E~~~G--sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (613)
                      ..+.+|.+.+..+. ..=...+.+++.+...    ..+||+|+++|  +|.+++....   .........+.+.+...+.
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~---~~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE---QLDPSQRRELLRALARLIA  132 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc---ccchhhHHHHHHHHHHHHH
Confidence            36778887776661 1224556666666532    46899999996  8999998632   1111223344445558899


Q ss_pred             HHhcCCceeeccc----eecCCC
Q 007199          584 RLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       584 ~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .||..+++|+|++    |++.+.
T Consensus       133 ~lH~~gi~H~Dl~~~NILv~~~~  155 (206)
T PF06293_consen  133 KLHDAGIYHGDLNPSNILVDPDD  155 (206)
T ss_pred             HHHHCcCCCCCCCcccEEEeCCC
Confidence            9999999988887    555553

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.11  E-value=0.022  Score=56.83  Aligned_cols=118  Identities=22%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeeccc----------------------h-----HHHHHHHHHHHhc-CCCCcc
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH----------------------H-----DVALKEIQNLIAS-DQHPNI  529 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~----------------------~-----~~~~~Ei~~L~~l-~~HpnI  529 (613)
                      .-.|++|.-+.||+|...++..+|||+.+...                      .     ....+|...|.++ -.+-.+
T Consensus        53 ~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrv  132 (268)
T COG1718          53 VGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRV  132 (268)
T ss_pred             EeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            44788899999999888889999999887410                      0     0356788888776 123345


Q ss_pred             eeEEEEEEeCCEEEEEecCCC--ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhc-CCceeeccc----eecCCC
Q 007199          530 VRWYGVESDQDFVYLSLERCT--CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLP-VMENTKDIE----LWKANG  602 (613)
Q Consensus       530 V~l~g~~~~~~~~~LV~E~~~--GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~-~~iiHrDlK----llh~dg  602 (613)
                      .+.+.+.    .-.|||||++  |.-.-.|+.-.   .... ....+...+++++.-|-. .+.+|.||.    |+| ++
T Consensus       133 P~Pi~~~----~nVLvMEfIg~~g~pAP~LkDv~---~e~~-e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~  203 (268)
T COG1718         133 PEPIAFR----NNVLVMEFIGDDGLPAPRLKDVP---LELE-EAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DG  203 (268)
T ss_pred             CCceeec----CCeEEEEeccCCCCCCCCcccCC---cCch-hHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CC
Confidence            5555544    2469999998  32222232210   0000 112223333366666655 899999998    677 55


Q ss_pred             cC
Q 007199          603 HP  604 (613)
Q Consensus       603 ~P  604 (613)
                      .|
T Consensus       204 ~p  205 (268)
T COG1718         204 EP  205 (268)
T ss_pred             eE
Confidence            54

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.11  E-value=0.27  Score=53.93  Aligned_cols=110  Identities=14%  Similarity=0.262  Sum_probs=66.3

Q ss_pred             CCCCEEEEEec---CCcEEEEeCCCCeeeEEee-CCCceeeccccccCCCCCeEEEecCCCCe--EEEEecCCCceeeec
Q 007199           46 PEPDVALVAAL---DGTIHLVDTKLGKIRWSFG-TGRPIYSSYQASFNSNASEFYLDVDEDWE--LYFHSKRFGKMKKLS  119 (613)
Q Consensus        46 ~~~~~v~v~t~---dG~l~ald~~tG~~~W~~~-~~~~i~s~~~~~~~~~~~~~~i~~~~DG~--lY~~~~~~G~l~~~~  119 (613)
                      +.+..+++.+.   ++.||..|..+|+.. .+. ..+.+...   ....+...+++..+.||+  ||.+|..+|.++++.
T Consensus       211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~---~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt  286 (435)
T PRK05137        211 PNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAP---RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT  286 (435)
T ss_pred             CCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCc---EECCCCCEEEEEEecCCCceEEEEECCCCceEEcc
Confidence            35555554443   358999999998764 222 22223221   122333345444555554  999999988875543


Q ss_pred             ccHHHHhhhCceeecCCc-EEEEe-ec--ceEEEEECCCCcEEEEE
Q 007199          120 SSAEEYIRRMPYISKDGG-VTLGA-MK--TSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       120 ~~~~~~v~~sP~~~~dg~-v~~Gs-~~--~~~~~vD~~tG~~~~~~  161 (613)
                      .  ...+..+|..+.||. +++.+ ..  ..+|.+|+.+|+.....
T Consensus       287 ~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt  330 (435)
T PRK05137        287 D--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS  330 (435)
T ss_pred             C--CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence            3  333556788888885 55554 32  37999999888776543

>PTZ00421 coronin; Provisional

Probab=96.05  E-value=0.14  Score=57.03  Aligned_cols=151  Identities=17%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH-
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY-  125 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~-  125 (613)
                      +++++.|+.||+|..-|..+|+.+=++.. ..+|.+-   ....+ ..+++.++.||.+..+|.++|+. ...+....- 
T Consensus       138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl---a~spd-G~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~  212 (493)
T PTZ00421        138 MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL---EWNLD-GSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASA  212 (493)
T ss_pred             CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE---EEECC-CCEEEEecCCCEEEEEECCCCcE-EEEEecCCCC
Confidence            46888899999999999999998777754 2345432   11122 24677788899999999999887 433332211 


Q ss_pred             hhhCceee-cCCcEEE-E---eecceEEEEECCCCcEEEE-EecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          126 IRRMPYIS-KDGGVTL-G---AMKTSVFLVDVKSGRVVDN-YVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       126 v~~sP~~~-~dg~v~~-G---s~~~~~~~vD~~tG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                      ........ .++.+++ |   +.++.+..-|..+...... ...+....          ..++      ..++       
T Consensus       213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~----------~~~~------~~d~-------  269 (493)
T PTZ00421        213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA----------LFIP------FFDE-------  269 (493)
T ss_pred             cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc----------eEEE------EEcC-------
Confidence            11111222 1233443 3   2467788888876543222 21111000          0000      1111       


Q ss_pred             cccEEEEEe-eeeEEEEEeCCCCceEEE
Q 007199          200 IRQLVYIMR-TDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       200 ~~~~v~igr-~d~~l~a~d~~~G~~~Wn  226 (613)
                      ..+.+|+|. .|++|+.+|..+|+..-.
T Consensus       270 d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        270 DTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            133778876 499999999988875443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.02  E-value=0.024  Score=60.77  Aligned_cols=141  Identities=13%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             EEEecCCCCeEEEEecCCCceeeecccHHHHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCc
Q 007199           95 FYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQ  173 (613)
Q Consensus        95 ~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~  173 (613)
                      +|+.-..+|++..+|..+.+. .-.+.+..-++.+.+++.||+ +|+.++++.+..||+.|++++.+...+....+-.+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~-~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKV-VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SE-EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeE-EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc


Q ss_pred             CCCCCccccCCCcccccccccccccccccEEEEEe-eeeEEEEEeCCCCceEEEEEeceeee--------eecccccCCC
Q 007199          174 SDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMR-TDYVLQSTSQDSGEVLWNVAYADFKA--------EFRCQEVGKS  244 (613)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr-~d~~l~a~d~~~G~~~Wn~t~~~~~a--------~~~~~~~~~~  244 (613)
                      .+++                         .+|++. .+..+..+|.++.+++-++....+.-        .....+....
T Consensus        87 ~DG~-------------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~  141 (369)
T PF02239_consen   87 PDGK-------------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE  141 (369)
T ss_dssp             -TTT-------------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred             CCCC-------------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE


Q ss_pred             cccccccCCCccccccc
Q 007199          245 FSGYHFNSGSELGMDLI  261 (613)
Q Consensus       245 ~~~~~~~s~~~~~~~~~  261 (613)
                      +-..-.++|.+|-+|++
T Consensus       142 fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen  142 FVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEEccCCeEEEEEec

...

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.01  E-value=0.067  Score=59.93  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=101.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      +...+..|..||.|.--|..+|-=.=+|..-..-+...+....   ....+-.+.||++-++|.+.+.- --.|+.++.+
T Consensus       361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~---g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~  436 (893)
T KOG0291|consen  361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR---GNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPI  436 (893)
T ss_pred             CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec---CCEEEEeecCCeEEeeeecccce-eeeecCCCce
Confidence            5558999999999999999999988888654332222111111   24677888999999999988887 7789999999


Q ss_pred             hhCceeecC--C-cEEEEeecc-eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          127 RRMPYISKD--G-GVTLGAMKT-SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       127 ~~sP~~~~d--g-~v~~Gs~~~-~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      +-+-+-. |  | .|++|+.|. .+|..+.+||+++-..+.-.+..    .       +      -.++|       ..+
T Consensus       437 Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV----s-------~------l~f~~-------~~~  491 (893)
T KOG0291|consen  437 QFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV----S-------G------LSFSP-------DGS  491 (893)
T ss_pred             eeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc----e-------e------eEEcc-------ccC
Confidence            8864443 6  5 466788765 48999999999998776433211    0       0      01222       245


Q ss_pred             EEEEEeeeeEEEEEe
Q 007199          203 LVYIMRTDYVLQSTS  217 (613)
Q Consensus       203 ~v~igr~d~~l~a~d  217 (613)
                      .++=|+||++|+.+|
T Consensus       492 ~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWD  506 (893)
T ss_pred             eEEeccccceEEEEE
Confidence            899999999999865

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.99  E-value=0.26  Score=54.08  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEecC---CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCC--eEEEEecCCCceeeec
Q 007199           45 PPEPDVALVAALD---GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDW--ELYFHSKRFGKMKKLS  119 (613)
Q Consensus        45 ~~~~~~v~v~t~d---G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG--~lY~~~~~~G~l~~~~  119 (613)
                      ++.+..+++.+.+   ..||.+|..+|+..--....+ +...  .....++..+++..+.+|  .||.+|..+|.++.+.
T Consensus       212 SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~--~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt  288 (433)
T PRK04922        212 SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGA--PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT  288 (433)
T ss_pred             CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccC--ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc
Confidence            3456666655543   369999999988754322222 2222  112233334544444455  6999999988874443


Q ss_pred             ccHHHHhhhCceeecCCc-EEEEe-ecc--eEEEEECCCCcEEEE
Q 007199          120 SSAEEYIRRMPYISKDGG-VTLGA-MKT--SVFLVDVKSGRVVDN  160 (613)
Q Consensus       120 ~~~~~~v~~sP~~~~dg~-v~~Gs-~~~--~~~~vD~~tG~~~~~  160 (613)
                        -...+..+|..+.||. +++.+ +.+  .+|.+|..+|+....
T Consensus       289 --~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l  331 (433)
T PRK04922        289 --NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL  331 (433)
T ss_pred             --cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence              2233556788888885 55555 333  599999999886543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.98  E-value=0.26  Score=54.31  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             CCCCCEEEEE-ecCC--cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCC--eEEEEecCCCceeeec
Q 007199           45 PPEPDVALVA-ALDG--TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDW--ELYFHSKRFGKMKKLS  119 (613)
Q Consensus        45 ~~~~~~v~v~-t~dG--~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG--~lY~~~~~~G~l~~~~  119 (613)
                      ++.+..+++. ..+|  .||.+|..+|+..--....+.. ..  .....++..+++..+.||  .||.+|..+|+.+++.
T Consensus       226 SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-~~--~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt  302 (448)
T PRK04792        226 SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-GA--PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT  302 (448)
T ss_pred             CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-CC--eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence            3455555544 4444  5999999998864322111111 11  112233334555555566  4999999988875554


Q ss_pred             ccHHHHhhhCceeecCCc-EEEEe-e--cceEEEEECCCCcEEEE
Q 007199          120 SSAEEYIRRMPYISKDGG-VTLGA-M--KTSVFLVDVKSGRVVDN  160 (613)
Q Consensus       120 ~~~~~~v~~sP~~~~dg~-v~~Gs-~--~~~~~~vD~~tG~~~~~  160 (613)
                      .  ......+|..+.||. +++.+ +  ...+|.+|+.+|+...-
T Consensus       303 ~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L  345 (448)
T PRK04792        303 R--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL  345 (448)
T ss_pred             c--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence            3  334556788887874 44433 2  24699999999987643

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=95.97  E-value=0.05  Score=54.20  Aligned_cols=70  Identities=11%  Similarity=0.014  Sum_probs=52.7

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCC-CcceeEEEEEEeCCEEEEEecCCCc
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQH-PNIVRWYGVESDQDFVYLSLERCTC  551 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~H-pnIV~l~g~~~~~~~~~LV~E~~~G  551 (613)
                      ..||+|..+.||+.   .|..+++|..... ......+|.+++..+-.. -.+.+.+.+....+...+|||+++|
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G   78 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVG   78 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCC
Confidence            57899999999983   2556778887753 345678899888776222 2356778888778888899999998

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=95.93  E-value=0.037  Score=60.18  Aligned_cols=107  Identities=15%  Similarity=0.068  Sum_probs=72.3

Q ss_pred             ceEEEEE-EeeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEEEecCCC--ccHHH
Q 007199          486 NGTVVLE-GNYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYLSLERCT--CSLND  555 (613)
Q Consensus       486 fG~Vyk~-~~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~LV~E~~~--GsL~~  555 (613)
                      -.+.||+ ...+|..+++||+..   ........-++.++++ .|+|+|++.++|..    +..++|||+|.+  ++|.+
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl-~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d  367 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKL-CHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYD  367 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHh-ccCceeehhhhhhhhccCcceEEEEEecCCCCchHHH
Confidence            3467887 588999999999932   2222233345567777 99999999999884    337899999999  48988


Q ss_pred             HHHHhcCC---------CccccCCHHHHHHHHH---HHHHHHhcCCceee
Q 007199          556 LIYVLSGS---------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTK  593 (613)
Q Consensus       556 ~L~~~~~~---------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHr  593 (613)
                      +--.....         ......++..+..++.   .+|.+||+.+.--+
T Consensus       368 ~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck  417 (655)
T KOG3741|consen  368 LYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACK  417 (655)
T ss_pred             HHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceee
Confidence            75432211         1233344555444444   89999999887543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=95.90  E-value=0.01  Score=64.98  Aligned_cols=80  Identities=18%  Similarity=0.008  Sum_probs=58.6

Q ss_pred             CCCCcceeEEEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH-----HHHHHHhcCCc-eeeccc
Q 007199          524 DQHPNIVRWYGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN-----EVRIRLLPVME-NTKDIE  596 (613)
Q Consensus       524 ~~HpnIV~l~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~-----~~l~~Lh~~~i-iHrDlK  596 (613)
                      +.|.|+.+++|.+.+....++|.+||. |+|.|.+...       .+.+++......     .||.|+|.-.| +|.-++
T Consensus         4 l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~-------~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~   76 (484)
T KOG1023|consen    4 LDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNE-------DIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALK   76 (484)
T ss_pred             cchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcc-------ccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeec
Confidence            389999999999999999999999999 9999999752       334444444433     89999999877 677666


Q ss_pred             eecCCCcCcceeeec
Q 007199          597 LWKANGHPSAQLLKV  611 (613)
Q Consensus       597 llh~dg~PsniLlkl  611 (613)
                      -. .++.-++.+|||
T Consensus        77 s~-nClvd~~w~lkl   90 (484)
T KOG1023|consen   77 SS-NCLVDSRWVLKL   90 (484)
T ss_pred             cc-cceeeeeEEEEe
Confidence            32 223333444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	613
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		2e-17
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		2e-17
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		2e-17
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		2e-17
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		1e-12
2hz6_A	369	The Crystal Structure Of Human Ire1-Alpha Luminal D		5e-04

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%)
Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIV 530
           +  LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN++
Sbjct: 13  LKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVI 72
Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLI 557
           R+Y  E+   F+Y++LE C  +L DL+
Sbjct: 73  RYYCSETTDRFLYIALELCNLNLQDLV 99

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%)
Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIV 530
           +  LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN++
Sbjct: 13  LKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVI 72
Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLI 557
           R+Y  E+   F+Y++LE C  +L DL+
Sbjct: 73  RYYCSETTDRFLYIALELCNLNLQDLV 99

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%)
Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIV 530
           +  LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN++
Sbjct: 31  LKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVI 90
Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLI 557
           R+Y  E+   F+Y++LE C  +L DL+
Sbjct: 91  RYYCSETTDRFLYIALELCNLNLQDLV 117

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%)
Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIV 530
           +  LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN++
Sbjct: 31  LKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVI 90
Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLI 557
           R+Y  E+   F+Y++LE C  +L DL+
Sbjct: 91  RYYCSETTDRFLYIALELCNLNLQDLV 117

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 471 IGKLVVFNKEI-AKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
           +GK+    K++   G+ GT+V  G ++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct: 21  VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 80
Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLI 557
           +R++  E D+ F Y+++E C  +L + +
Sbjct: 81  IRYFCTEKDRQFQYIAIELCAATLQEYV 108

>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain Length = 369

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 35/210 (16%)
Query: 57  DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK 116
           DG++H V  + G I+W+     P+    Q   +     F  D ++       SK    + 
Sbjct: 18  DGSLHAVSKRTGSIKWTLKED-PVL---QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT 73
Query: 117 KLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDE 176
           KL  +  E ++  P  S DG + +G  +   +++D+ +G                     
Sbjct: 74  KLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG--------------------- 112
Query: 177 NKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEF 236
                  +  + L  +   +L     L+Y+ RT+Y +      + E+ WN  Y D+ A  
Sbjct: 113 -------EKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASL 165
Query: 237 RCQEVGKSFSGYHFNSGSELGMDLIGDVES 266
              +V    S  HF S  + G+ +  D ES
Sbjct: 166 PEDDVDYKMS--HFVSNGD-GLVVTVDSES 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	613
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-32
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-31
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	3e-20
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	1e-14
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-09
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-08
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-08
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-07
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-07
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	9e-07
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-06
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-06
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-06
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-06
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-06
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	6e-06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	7e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-06
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	9e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-05
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-05
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-05
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-05
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-05
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-05
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-05
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	4e-05
3an0_A	340	Dual specificity mitogen-activated protein kinase;	5e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	5e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	6e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	6e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	6e-05
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	7e-05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	9e-05
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	9e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-05
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-04
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-04
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-04
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-04
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-04
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-04
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-04
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-04
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	7e-04
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	7e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	8e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	8e-04

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  129 bits (325), Expect = 2e-32
 Identities = 44/106 (41%), Positives = 67/106 (63%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPN 528
           + +  LVV  K +  GS+GTVV +G+++GR VAVKR++    D+AL EI+ L  SD HPN
Sbjct: 11  QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPN 70

Query: 529 IVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD 574
           ++R+Y  E+   F+Y++LE C  +L DL+   + S E     KE +
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYN 116

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  125 bits (316), Expect = 3e-31
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)

Query: 459 TDLIDDRVDGRRIGKL-VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEI 517
            D  D+      +GK+       +  G+ GT+V  G ++ R VAVKR++      A +E+
Sbjct: 9   QDDGDEETSVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREV 68

Query: 518 QNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           Q L  SD+HPN++R++  E D+ F Y+++E C  +L + +     +    
Sbjct: 69  QLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGL 118

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339

 Score = 91.4 bits (226), Expect = 3e-20
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 30/201 (14%)

Query: 49  DVALVAALDGTIHLVDTKLGKIRWSF--GTGRPIYSSYQASFNSNASEFYLDVDEDWELY 106
           D+ + A ++G +H VD + G I WS      +P+    + S         ++   D  +Y
Sbjct: 11  DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIY 70

Query: 107 FHSKRFGKMKKLSSSAEEYIRRMPYISK-------------DGGVTLGAMKTSVFLVDVK 153
           + +   G ++KL  S  + +   P   K             D  V  G+M+T ++ +++ 
Sbjct: 71  YFNAHQG-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML 129

Query: 154 SGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVL 213
           +G ++  +         G QS +      +   E               ++ I +T + L
Sbjct: 130 NGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC------------ENMIVIGKTIFEL 177

Query: 214 QSTSQDSGEVLWNVAYADFKA 234
              S D     +NV Y+ ++ 
Sbjct: 178 GIHSYDGAS--YNVTYSTWQQ 196

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 34/187 (18%)

Query: 49  DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFH 108
            +  V+ LDG++H V  + G I+W+      +         +    F  D   D  LY  
Sbjct: 10  TLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPA----FLPD-PNDGSLYTL 64

Query: 109 SKRFGK-MKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSA 167
             +  + + KL  +  E ++  P  S DG + +G  +   +++D+ +G            
Sbjct: 65  GSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT------- 117

Query: 168 STPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNV 227
                 S     + P                    L+Y+ RT+Y +      + E+ WN 
Sbjct: 118 ----LSSAFADSLSPSTS-----------------LLYLGRTEYTITMYDTKTRELRWNA 156

Query: 228 AYADFKA 234
            Y D+ A
Sbjct: 157 TYFDYAA 163

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIASDQHPNIVRW 532
             +  GS G V       +GR  AVKR +            L E+ +     QHP  VR 
Sbjct: 63  SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRL 122

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEE 566
                +   +YL  E C  SL         S  E
Sbjct: 123 EQAWEEGGILYLQTELCGPSLQQHCEAWGASLPE 156

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 481 IAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDVALKEIQ---NLIASDQHPNIVRWYGVE 536
           + KG+ G V    +      +A+K  +        + +     L    +H NIV++ G  
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKE-IPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 88

Query: 537 SDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           S+  F+ + +E+    SL+ L+    G  ++ 
Sbjct: 89  SENGFIKIFMEQVPGGSLSALLRSKWGPLKDN 120

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIASDQHPNIVRW 532
           ++I  G  G+V       +G   A+KR  K          AL+E+       QH ++VR+
Sbjct: 17  EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRY 76

Query: 533 YGVESDQDFVYLSLERCTC-SLNDLI---YVLSGSFEEQL 568
           +   ++ D + +  E C   SL D I   Y +   F+E  
Sbjct: 77  FSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAE 116

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 473 KLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVR 531
            L + +K + +GS             ++ AVK + K       KEI  L   + HPNIV+
Sbjct: 11  DLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVK 70

Query: 532 WYGVESDQDFVYLSLERCT 550
            + V  DQ   +L +E   
Sbjct: 71  LHEVFHDQLHTFLVMELLN 89

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 477 FNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGV 535
             ++I  GS                AVK + K+  D   +EI+ L+   QHPNI+    V
Sbjct: 26  VKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDP-TEEIEILLRYGQHPNIITLKDV 84

Query: 536 ESDQDFVYLSLERCT 550
             D  +VY+  E   
Sbjct: 85  YDDGKYVYVVTELMK 99

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVAL--KEIQNLIASDQH 526
           R I + +V  + I KG  G V   G + G  VAVK              EI       +H
Sbjct: 38  RTIARTIVLQESIGKGRFGEV-WRGKWRGEEVAVKIFSSREERSWFREAEIYQT-VMLRH 95

Query: 527 PNIVRWYGVESDQD 540
            NI+ +   ++  +
Sbjct: 96  ENILGFIAADNKDN 109

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA-------LKEIQNLIASDQHP 527
           +   + I  G  G V     + G  VAVK       +          +E + L A  +HP
Sbjct: 9   LTLEEIIGIGGFGKV-YRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAK-LFAMLKHP 66

Query: 528 NIVRWYGVESDQDFVYLSLERCTC-SLNDLI 557
           NI+   GV   +  + L +E      LN ++
Sbjct: 67  NIIALRGVCLKEPNLCLVMEFARGGPLNRVL 97

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 470 RIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQNLIAS 523
            + ++    K++  G+ G V+L          A+K      +  + +   L+E+  L   
Sbjct: 34  HLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL 93

Query: 524 DQHPNIVRWYGVESDQDFVYLSLERCT 550
           D HPNI++ Y    D+   YL +E   
Sbjct: 94  D-HPNIMKLYDFFEDKRNYYLVMECYK 119

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQNLIA 522
               +       + KGS G V+  +     +  AVK               L+E++ L  
Sbjct: 18  GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK 77

Query: 523 SDQHPNIVRWYGVESDQDFVYLSLERCT 550
            D HPNI++ + +  D    Y+  E  T
Sbjct: 78  LD-HPNIMKLFEILEDSSSFYIVGELYT 104

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 16/180 (8%)

Query: 386 FYHSKQVKSKKQNEEHITK---TGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETD 442
            +HS  V +K   E    +     +P   + +R  + R+  +       +  E+K     
Sbjct: 5   HHHSSGVDNKFNKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDA 64

Query: 443 GLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVA 501
                     + +    D + D    +   +       I +G +  V        G   A
Sbjct: 65  QPKGTENLYFQSM-GPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFA 123

Query: 502 VKRLVKT-----------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT 550
           VK +  T             +   +E   L     HP+I+          F++L  +   
Sbjct: 124 VKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMR 183

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH------HDVALKEIQNLI 521
                     + + KGS G V+L +    G+  AVK + K         +  L+E+Q L 
Sbjct: 22  AIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLK 81

Query: 522 ASDQHPNIVRWYGVESDQDFVYLSLERCT 550
             D HPNI++ Y    D+ + YL  E  T
Sbjct: 82  QLD-HPNIMKLYEFFEDKGYFYLVGEVYT 109

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 471 IGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIA---SDQH 526
           I  L +F +++  G+ G V L E    G    +K + K    V +++I+  I    S  H
Sbjct: 20  IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDH 79

Query: 527 PNIVRWYGVESDQDFVYLSLERCT 550
           PNI++ + V  D   +Y+ +E C 
Sbjct: 80  PNIIKIFEVFEDYHNMYIVMETCE 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 36/255 (14%), Positives = 81/255 (31%), Gaps = 86/255 (33%)

Query: 425 SEKMQNIIPNESKVGETDGLSHITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKG 484
            +  ++I+  E    E D   HI  + +                R    L+   +E+ + 
Sbjct: 39  QDMPKSILSKE----EID---HIIMSKDA---------VSGTL-RLFWTLLSKQEEMVQK 81

Query: 485 SNGTVVLEGNYE-----------GRSVAVKRLVKTH------------HDV----ALKEI 517
               V L  NY+             S+  +  ++              ++V       ++
Sbjct: 82  FVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 518 QNLIASDQ-HPNIV-----------------RWYGVESDQDF-VY-LSLERCTCS----- 552
           +  +   +   N++                   Y V+   DF ++ L+L+ C        
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 553 -LNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRL------------LPVMENTKDIELWK 599
            L  L+Y +  ++  + +        ++ ++  L            L V+ N ++ + W 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 600 A-NGHPSAQLLKVTR 613
           A N     ++L  TR
Sbjct: 261 AFNLS--CKILLTTR 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 53/437 (12%), Positives = 120/437 (27%), Gaps = 137/437 (31%)

Query: 231 DFKAEFRCQEVGKSFSGYHFNSGSELGMDLIGDVE-SHLPCHTQMTASVYRL-------R 282
            F   F C++V             ++   ++   E  H+       +   RL       +
Sbjct: 28  AFVDNFDCKDV------------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 283 DNSLPEFL-SVIGKVAGWI-----------SLPGSSQNSLLGPVDRNSPLFLPDKVDRPP 330
           +  + +F+  V+     ++           S+           +  ++ +F    V R  
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 331 L------ALPSTETEIPWTL--GMPG-G-SV--SEINKKHAFVEGFRSYIQSFIVLFIAL 378
                  AL          L  G+ G G +    ++   +            F + ++ L
Sbjct: 136 PYLKLRQALLELRPA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKM-----DFKIFWLNL 189

Query: 379 ----CP--IIGFL--FYHSKQVKSKKQNEEHITKTGIP----KKKKSR---RPGYNR--- 420
                P  ++  L    + +   +     +H +   +     + +  R      Y     
Sbjct: 190 KNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 421 ---NTTNSEKMQ--NIIPNESKVGETDGLSHITGNGEKFLLTFTDL-IDDRVDGRRIGKL 474
              N  N++     N+     K+                LLT     + D +       +
Sbjct: 249 VLLNVQNAKAWNAFNL---SCKI----------------LLTTRFKQVTDFLSAATTTHI 289

Query: 475 VV------FNKEIAKGSNGTVVLEGNYEGRSVA-VKRLVKTHHDVALKEIQNLIASDQHP 527
            +         +  K       L   Y       + R V T +   L    ++IA     
Sbjct: 290 SLDHHSMTLTPDEVKS------LLLKYLDCRPQDLPREVLTTNPRRL----SIIAESIRD 339

Query: 528 NIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLP 587
            +  W       ++ +++ ++    L  +I     S    L   E    + + + +   P
Sbjct: 340 GLATW------DNWKHVNCDK----LTTII----ESSLNVLEPAEY-RKMFDRLSV--FP 382

Query: 588 VMENTKDIE------LW 598
              +   I       +W
Sbjct: 383 --PSAH-IPTILLSLIW 396

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVAL--KEIQNLIASDQH 526
           R + + +   + + KG  G V   G+++G +VAVK              E+ N +   +H
Sbjct: 4   RTVARDITLLECVGKGRYGEV-WRGSWQGENVAVKIFSSRDEKSWFRETELYNTVML-RH 61

Query: 527 PNIVRWYGVE 536
            NI+ +   +
Sbjct: 62  ENILGFIASD 71

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 39/188 (20%)

Query: 387 YHSKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSH 446
           +H             + +T   K ++      +  T + +K  +       V        
Sbjct: 2   HHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISV-------- 53

Query: 447 ITGNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLV 506
               G  + +            ++IG           G +  V    N + +  A+K + 
Sbjct: 54  ---KGRIYSI-----------LKQIGS----------GGSSKVFQVLNEKKQIYAIKYVN 89

Query: 507 KTHHD-VALKEIQNLIA-----SDQHPNIVRWYGVESDQDFVYLSLERCTCSLNDLIYVL 560
               D   L   +N IA           I+R Y  E    ++Y+ +E     LN  +   
Sbjct: 90  LEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWL-KK 148

Query: 561 SGSFEEQL 568
             S +   
Sbjct: 149 KKSIDPWE 156

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRL-VKTHHDVALKEIQNLIASDQHPNIVRWY 533
           +   + + +G+ G V  +  +  + VA+K++  ++     + E++ L +   HPNIV+ Y
Sbjct: 10  IEVEEVVGRGAFGVV-CKAKWRAKDVAIKQIESESERKAFIVELRQL-SRVNHPNIVKLY 67

Query: 534 GV 535
           G 
Sbjct: 68  GA 69

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVAL-----KEIQNLIASDQHPNI 529
           +   ++I  GS GTV     + G  VAVK L++            +E+  +    +HPNI
Sbjct: 39  LNIKEKIGAGSFGTV-HRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIM-KRLRHPNI 96

Query: 530 VRWYGVESDQDFVYLSLERCTC-SLNDLI 557
           V + G  +    + +  E  +  SL  L+
Sbjct: 97  VLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVES 537
             + +GS G V    + + G   AVK+ V+      ++E+    A    P IV  YG   
Sbjct: 64  PRVGRGSFGEVHRMKDKQTGFQCAVKK-VRLE-VFRVEEL-VACAGLSSPRIVPLYGAVR 120

Query: 538 DQDFVYLSLERCTC-SLNDLIYVLSGSFEEQL 568
           +  +V + +E     SL  LI    G   E  
Sbjct: 121 EGPWVNIFMELLEGGSLGQLI-KQMGCLPEDR 151

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 476 VFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYG 534
           V ++ +  G NG V+           A+K L       A +E++    + Q P+IVR   
Sbjct: 21  VTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVD 78

Query: 535 V----ESDQDFVYLSLERCT 550
           V     + +  + + +E   
Sbjct: 79  VYENLYAGRKCLLIVMECLD 98

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 471 IGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVK----RLVKTHHDVALKEIQNLIASDQ 525
           I +       I +GS G V +          A K      V+       +EI+ + + D 
Sbjct: 7   INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRF-KQEIEIMKSLD- 64

Query: 526 HPNIVRWYGVESDQDFVYLSLERCT 550
           HPNI+R Y    D   +YL +E CT
Sbjct: 65  HPNIIRLYETFEDNTDIYLVMELCT 89

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 468 GRRIGKLVVFNKEIAKGSNGTVVLEGNYE-GRSVAVK-----RLVKTHHDVALK---EIQ 518
           G +I    V    + KGS   V    +   G  VA+K      + K      ++   +I 
Sbjct: 7   GEKIEDFKV-GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH 65

Query: 519 NLIASDQHPNIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAK 571
             +   +HP+I+  Y    D ++VYL LE C    +N  +      F E     
Sbjct: 66  CQL---KHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARH 116

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD-VALKEIQNLIA-----SDQHPNIVRW 532
           K+I  G +  V    N + +  A+K +     D   L   +N IA           I+R 
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQL 568
           Y  E    ++Y+ +E     LN  +     S +   
Sbjct: 75  YDYEITDQYIYMVMECGNIDLNSWL-KKKKSIDPWE 109

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKE--IQNLIASDQH 526
           R I K +   K+I KG  G V   G + G  VAVK    T      +E  I   +   +H
Sbjct: 33  RTIAKQIQMVKQIGKGRYGEV-WMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLM-RH 90

Query: 527 PNIVRWYGVE 536
            NI+ +   +
Sbjct: 91  ENILGFIAAD 100

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 470 RIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQNLIAS 523
              +       + KGS G V+  +     +  AVK               L+E++ L   
Sbjct: 19  TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL 78

Query: 524 DQHPNIVRWYGVESDQDFVYLSLERCT 550
           D HPNI++ + +  D    Y+  E  T
Sbjct: 79  D-HPNIMKLFEILEDSSSFYIVGELYT 104

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 466 VDGRRIGKLVVFNKEIAKGSNGTVVLEGNYE-GRSVAVK-----RLVKTHHDVALK-EIQ 518
           VD R   + V   + + KG         + +     A K      L+K H    +  EI 
Sbjct: 9   VDPRSRRRYVR-GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEIS 67

Query: 519 NLIASDQHPNIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
               S  H ++V ++G   D DFV++ LE C   SL +L      +  E 
Sbjct: 68  IH-RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELH-KRRKALTEP 115

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD-VALKEIQNLIA-----SDQHPNIVRW 532
           K+I  G +  V    N + +  A+K +     D   L   +N IA           I+R 
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQL 568
           Y  E    ++Y+ +E     LN  +     S +   
Sbjct: 94  YDYEITDQYIYMVMECGNIDLNSWL-KKKKSIDPWE 128

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 23/127 (18%)

Query: 466 VDGRRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD---VALKEIQNLI 521
           +D +      +F +++ +G    V L EG ++G   A+KR++         A +E     
Sbjct: 26  IDNKH----YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMH- 80

Query: 522 ASDQHPNIVRWYGVESDQDF----VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL 577
               HPNI+R       +       +L L           +   G+   ++   +   N 
Sbjct: 81  RLFNHPNILRLVAYCLRERGAKHEAWLLLP----------FFKRGTLWNEIERLKDKGNF 130

Query: 578 LNEVRIR 584
           L E +I 
Sbjct: 131 LTEDQIL 137

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 472 GKLVVFNKEIAKGSNGTVVLEGNYE-GRSVAVK-----RLVKTHHDVALKEIQNLIASDQ 525
           G+ + F+ EI +GS  TV    + E    VA       +L K+      +E + L    Q
Sbjct: 25  GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL-Q 83

Query: 526 HPNIVR----WYGVESDQDFVYLSLERCTC-SLNDLI 557
           HPNIVR    W      +  + L  E  T  +L   +
Sbjct: 84  HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL 120

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVAL-----KEIQNLIASDQHPNI 529
           + F  ++ +  +G +  +G ++G  + VK L              +E   L     HPN+
Sbjct: 12  LNFLTKLNENHSGEL-WKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL-RIFSHPNV 69

Query: 530 VRWYGVESDQDFVYLSL 546
           +   G        + +L
Sbjct: 70  LPVLGACQSPPAPHPTL 86

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 497 GRSVAVK-----RLVKTHHDVALK-EIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT 550
               A K      L+K H    +  EI     S  H ++V ++G   D DFV++ LE C 
Sbjct: 66  KEVFAGKIVPKSLLLKPHQREKMSMEISIH-RSLAHQHVVGFHGFFEDNDFVFVVLELCR 124

Query: 551 C-SLNDLIYVLSGSFEEQ 567
             SL +L      +  E 
Sbjct: 125 RRSLLELH-KRRKALTEP 141

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHH------DVALKEIQNLIASDQHPNIVR 531
           K+I +G    V       +G  VA+K++              +KEI +L+    HPN+++
Sbjct: 38  KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEI-DLLKQLNHPNVIK 96

Query: 532 WYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRI 583
           +Y    + + + + LE             +G     +   ++   L+ E  +
Sbjct: 97  YYASFIEDNELNIVLE----------LADAGDLSRMIKHFKKQKRLIPERTV 138

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGV-E 536
           + I  G  G V   +   +G++  +KR VK +++ A +E+   +A   H NIV + G  +
Sbjct: 17  ELIGSGGFGQVFKAKHRIDGKTYVIKR-VKYNNEKAEREV-KALAKLDHVNIVHYNGCWD 74

Query: 537 SDQDFVYLSLERCTCSLNDLIYVL-----SGSFEEQLNAKEQDSNLLNEVRIR 584
                   S +  + S    +++       G+ E+ +  +++    L++V   
Sbjct: 75  GFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWI--EKRRGEKLDKVLAL 125

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 9/90 (10%)

Query: 477 FNKEIAKGSNGTVVL------EGNYEGRSVAVKRLVKTHH--DVALKEIQNLIASDQHPN 528
            +  + +G+   V              +   +K     +        ++   +       
Sbjct: 69  VHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHM 128

Query: 529 IVRWYGVESDQDFVYLSLERCTC-SLNDLI 557
            +++Y     Q+   L  E  +  +L + I
Sbjct: 129 FMKFYSAHLFQNGSVLVGELYSYGTLLNAI 158

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 18/98 (18%)

Query: 470 RIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKT----------------HHDV 512
           +IG+     +++  G+ G V+L +        A+K + K+                 H+ 
Sbjct: 33  KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEE 92

Query: 513 ALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT 550
              EI  L + D HPNI++ + V  D+ + YL  E   
Sbjct: 93  IYNEISLLKSLD-HPNIIKLFDVFEDKKYFYLVTEFYE 129

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 466 VDGRRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQN 519
           +   R  +     +E+ KG+   V        G+  A       +L    H    +E + 
Sbjct: 4   ITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARI 63

Query: 520 LIASDQHPNIVRWYGVESDQDFVYLSLERCT 550
                 HPNIVR +   S++   YL  +  T
Sbjct: 64  CRLLK-HPNIVRLHDSISEEGHHYLIFDLVT 93

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 13/87 (14%)

Query: 477 FNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH------------HDVALKEIQNLIAS 523
             + + +G +  V         +  AVK +  T              +  LKE+  L   
Sbjct: 21  PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV 80

Query: 524 DQHPNIVRWYGVESDQDFVYLSLERCT 550
             HPNI++         F +L  +   
Sbjct: 81  SGHPNIIQLKDTYETNTFFFLVFDLMK 107

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 463 DDRVDGRR---IGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALK-EI 517
           D  +DG     +        E+ +G+   V   +     +  A+K L KT     ++ EI
Sbjct: 40  DYWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEI 99

Query: 518 QNLIASDQHPNIVRWYGVESDQDFVYLSLERCT 550
             L+    HPNI++   +      + L LE  T
Sbjct: 100 GVLLRLS-HPNIIKLKEIFETPTEISLVLELVT 131

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 476 VFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYG 534
           V ++ +  G NG V+           A+K L       A +E++    + Q P+IVR   
Sbjct: 65  VTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVD 122

Query: 535 V----ESDQDFVYLSLERCT 550
           V     + +  + + +E   
Sbjct: 123 VYENLYAGRKCLLIVMECLD 142

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKR--LVKTHHDVALKEIQNLI---ASDQHPNIVRW 532
           +EI  GS G V    +      VA+K+        +   ++I   +      +HPN +++
Sbjct: 60  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY 119

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
            G    +   +L +E C  S +DL+ V     +E 
Sbjct: 120 RGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEV 154

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 477 FNKEIAKGSNGTVVL-EGNYEGRSVAVK----RLVKTHHDVALKEIQNLIASDQHPNIVR 531
           F + +  G+   V L +    G+  A+K            +   EI  L     H NIV 
Sbjct: 13  FMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSL-ENEIAVLKKIK-HENIVT 70

Query: 532 WYGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQ 567
              +       YL ++  +   L D I +  G + E+
Sbjct: 71  LEDIYESTTHYYLVMQLVSGGELFDRI-LERGVYTEK 106

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 18/110 (16%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV--ALKEIQNLIASDQHPNIVRWYGV 535
             + +G+ G VV      + R  A+K++  T   +   L E+  L+AS  H  +VR+Y  
Sbjct: 12  AVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEV-MLLASLNHQYVVRYYAA 70

Query: 536 ESDQD-------------FVYLSLERCTC-SLNDLIYVLSGSFEEQLNAK 571
             ++               +++ +E C   +L DLI+  + + +     +
Sbjct: 71  WLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWR 120

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 476 VFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQ-NLIASDQHPNIVRWYG 534
              + I +G  G V  +G+ + R VAVK     +    + E     +   +H NI R+  
Sbjct: 16  KLLELIGRGRYGAV-YKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIV 74

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDVAL--KEIQNLIASDQHPNIVRWYGV 535
           +++ +GS G+V    + E G+ VA+K  V    D+    KEI  +   D  P++V++YG 
Sbjct: 35  EKLGEGSYGSVYKAIHKETGQIVAIK-QVPVESDLQEIIKEISIMQQCD-SPHVVKYYGS 92

Query: 536 ESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
                 +++ +E C   S++D+I + + +  E 
Sbjct: 93  YFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTED 125

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDVALKEIQN----LIASDQHPNIVRWY 533
            E+  G+ G V      + G  +AVK++ ++ +    K I      ++ S   P IV+ +
Sbjct: 31  GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCF 90

Query: 534 GVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAK 571
           G       V++++E        L   + G   E++  K
Sbjct: 91  GTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGK 128

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 478 NKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGV- 535
            + +  G NG V+       G+  A+K L  +    A +E+ +   +   P+IV    V 
Sbjct: 34  KQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP--KARQEVDHHWQASGGPHIVCILDVY 91

Query: 536 ---ESDQDFVYLSLERCT 550
                 +  + + +E   
Sbjct: 92  ENMHHGKRCLLIIMECME 109

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 478 NKEIAKGSNGTVVL-EGNYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWY 533
              + +G++  V         +  AVK + K          +E++ L     H N++   
Sbjct: 18  EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELI 77

Query: 534 GVESDQDFVYLSLERCT 550
               ++D  YL  E+  
Sbjct: 78  EFFEEEDRFYLVFEKMR 94

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA-----LKEIQNLIASDQHPNI 529
           +   + I KG  G V   G + G  VA++ +     +        +E+       +H N+
Sbjct: 35  LEIGELIGKGRFGQV-YHGRWHGE-VAIRLIDIERDNEDQLKAFKREVMAY-RQTRHENV 91

Query: 530 VRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQL 568
           V + G       + +    C   +L  ++       +   
Sbjct: 92  VLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNK 131

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRW 532
           ++I +GS G  +L +   +GR   +K +  +         + +E+  ++A+ +HPNIV++
Sbjct: 30  QKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREV-AVLANMKHPNIVQY 88

Query: 533 YGVESDQDFVYLSLERCTC-SLNDLI 557
                +   +Y+ ++ C    L   I
Sbjct: 89  RESFEENGSLYIVMDYCEGGDLFKRI 114

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGR--SVAVKRLVKTHHDVA----------LKEIQNLIA 522
           + + K+I KG  G V  +G        VA+K L+    +             +E+  + +
Sbjct: 21  IEYEKQIGKGGFGLV-HKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM-S 78

Query: 523 SDQHPNIVRWYGV 535
           +  HPNIV+ YG+
Sbjct: 79  NLNHPNIVKLYGL 91

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 475 VVFNKEIAKGSNGTVV------LEGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASD 524
           + F K +  G+ G VV      L  +    +VAVK L  + H       + E++ L    
Sbjct: 25  LSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG 84

Query: 525 QHPNIVRWYGVESDQDFVYLSLE 547
            H NIV   G  +      +  E
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITE 107

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 475 VVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD---VALKEIQNLIASDQHPNIV 530
           +   + +A+G    V   +    GR  A+KRL+    +     ++E+  +     HPNIV
Sbjct: 30  LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIV 89

Query: 531 RWYGV--------ESDQDFVYLSLERCTCSLNDLI--YVLSGSFEEQ 567
           ++           ++ Q    L  E C   L + +      G     
Sbjct: 90  QFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCD 136

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNI 529
             I +GS G V +   N      A+K + K           +    E++ +     HPNI
Sbjct: 32  GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLH-HPNI 90

Query: 530 VRWYGVESDQDFVYLSLERCT 550
            R Y V  D+ ++ L +E C 
Sbjct: 91  ARLYEVYEDEQYICLVMELCH 111

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEG-------RSVAVKRLVKTHHDVA----LKEIQNLIAS 523
           + F K +  G+ G VV E    G         VAVK L  T H       + E++ +   
Sbjct: 48  LQFGKTLGAGAFGKVV-EATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHL 106

Query: 524 DQHPNIVRWYGVESDQDFVYLSLERC 549
            QH NIV   G  +    V +  E C
Sbjct: 107 GQHENIVNLLGACTHGGPVLVITEYC 132

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA-----LKEIQNLIASDQHPNI 529
           +   + I  GS GTV  +G + G  VAVK L  T            E+  L    +H NI
Sbjct: 26  ITVGQRIGSGSFGTV-YKGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGVL-RKTRHVNI 82

Query: 530 VRWYGV 535
           + + G 
Sbjct: 83  LLFMGY 88

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRS--VAVKRLVKTHHDVA--LKEIQNLIASDQHPNIV 530
           +    ++  G  G  V EG ++  S  VAVK L +   +V   LKE   +    +HPN+V
Sbjct: 222 ITMKHKLGGGQYG-EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLV 279

Query: 531 RWYGVESDQDFVYLSLE 547
           +  GV + +   Y+  E
Sbjct: 280 QLLGVCTREPPFYIITE 296

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 470 RIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQNLIAS 523
           +        +E+ KG+   V        G   A K     +L         +E +     
Sbjct: 26  KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC-RK 84

Query: 524 DQHPNIVRWYGVESDQDFVYLSLERCT 550
            QHPNIVR +    ++ F YL  +  T
Sbjct: 85  LQHPNIVRLHDSIQEESFHYLVFDLVT 111

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 475 VVFNKEIAKGSNGTVV------LEGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASD 524
           + F K +  G+ G V+      +        VAVK L +          + E++ +    
Sbjct: 47  LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG 106

Query: 525 QHPNIVRWYGVESDQDFVYLSLERC 549
            H NIV   G  +    +YL  E C
Sbjct: 107 SHENIVNLLGACTLSGPIYLIFEYC 131

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQNLIASDQHPNIVRW 532
           +E+ KG+   V        G   A K     +L         +E +      QHPNIVR 
Sbjct: 12  EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC-RKLQHPNIVRL 70

Query: 533 YGVESDQDFVYLSLERCT 550
           +    ++ F YL  +  T
Sbjct: 71  HDSIQEESFHYLVFDLVT 88

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 475 VVFNKEIAKGSNGTVV------LEGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASD 524
           +   K + +G+ G V+      ++     R+VAVK L +          + E++ LI   
Sbjct: 29  LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG 88

Query: 525 QHPNIVRWYGVESDQD 540
            H N+V   G  +   
Sbjct: 89  HHLNVVNLLGACTKPG 104

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 475 VVFNKEIAKGSNGTVV---LEGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASDQHP 527
           + F   I +G+ G V+   ++ +      A+KR+ +            E++ L     HP
Sbjct: 27  IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHP 86

Query: 528 NIVRWYGVESDQDFVYLSLE 547
           NI+   G    + ++YL++E
Sbjct: 87  NIINLLGACEHRGYLYLAIE 106

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 46/97 (47%), Gaps = 19/97 (19%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV----ALKEIQNLIASDQHPNIVRWY 533
           + + +G  G V   +   +  + A+KR+   + ++     ++E++  +A  +HP IVR++
Sbjct: 11  QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVK-ALAKLEHPGIVRYF 69

Query: 534 GVESDQD------------FVYLSLERCT-CSLNDLI 557
               +++            ++Y+ ++ C   +L D +
Sbjct: 70  NAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWM 106

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 476 VFNKEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHH----DVALKEIQNLIASDQHPNIV 530
           + +  + +G+   V    + + G   A+K           DV ++E + L   + H NIV
Sbjct: 12  LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN-HKNIV 70

Query: 531 RWYGVESDQ--DFVYLSLERCTC-SLNDLI 557
           + + +E +       L +E C C SL  ++
Sbjct: 71  KLFAIEEETTTRHKVLIMEFCPCGSLYTVL 100

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD--VALKEIQNLIASDQHPNIVRWYG 534
             +  A+G  G V          VAVK              E+ +L    +H NI+++ G
Sbjct: 28  LLEVKARGRFGCVWK-AQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGM-KHENILQFIG 85

Query: 535 VE 536
            E
Sbjct: 86  AE 87

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 475 VVFNKEIAKGSNGTVVL-----EGNYEGRSVAVKRLVKTHHDVA-----LKEIQNLIASD 524
           +   +++ +G  G V L       +  G  VAVK L K            +EI  ++ + 
Sbjct: 33  LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKAL-KADAGPQHRSGWKQEID-ILRTL 90

Query: 525 QHPNIVRWYGV--ESDQDFVYLSLE 547
            H +I+++ G   ++    + L +E
Sbjct: 91  YHEHIIKYKGCCEDAGAASLQLVME 115

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHHDVALK---------EIQNLI---ASDQ 525
             + KG  GTV           VA+K + +                 E+  L    A   
Sbjct: 37  PLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGG 96

Query: 526 HPNIVRWYGVESDQDFVYLSLER 548
           HP ++R       Q+   L LER
Sbjct: 97  HPGVIRLLDWFETQEGFMLVLER 119

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRS---------VAVKRLVKTHHDVA----LKEIQNLI 521
           +V  K + +G+ G VV      G           VAVK L     +      + E++ + 
Sbjct: 71  LVLGKPLGEGAFGQVV-LAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 129

Query: 522 ASDQHPNIVRWYGVESDQDFVYLSLERCT 550
              +H NI+   G  +    +Y+ +E  +
Sbjct: 130 MIGKHKNIINLLGACTQDGPLYVIVEYAS 158

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 477 FNKEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTHH----DVALKEIQNLIASDQHPNIVR 531
            +  + +G+   V    + + G   A+K           DV ++E + L   + H NIV+
Sbjct: 13  LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN-HKNIVK 71

Query: 532 WYGVESDQ--DFVYLSLERCTC-SLNDLI 557
            + +E +       L +E C C SL  ++
Sbjct: 72  LFAIEEETTTRHKVLIMEFCPCGSLYTVL 100

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 25/173 (14%)

Query: 391 QVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHITGN 450
                  +++      + K+   RR    + T ++E   ++  N   V  T  LS     
Sbjct: 4   SHHHHHHSQDPPAVHKLTKRIPLRR----QVTVSAESSSSMNSNTPLVRITTRLSSTADT 59

Query: 451 GEKFLLTFTDLIDDR---VDGRRIGKLVVFNKEIAKGSNGTVVLEGNYEGRS-------- 499
                ++  +L +D        ++       K + +G  G VV      G          
Sbjct: 60  PMLAGVSEYELPEDPKWEFPRDKL----TLGKPLGEGCFGQVV-MAEAVGIDKDKPKEAV 114

Query: 500 -VAVKRLVKTHHDVA----LKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE 547
            VAVK L     +      + E++ +    +H NI+   G  +    +Y+ +E
Sbjct: 115 TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 167

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 476 VFNKEIAKGSNGTVVL-EGNYEGRSVAVK-----RLVKTHHDVALKEIQNLIASDQHPNI 529
           + +KE+ +G    V        G+  A K     R  +      L EI  L  +   P +
Sbjct: 32  LTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRV 91

Query: 530 VRWYGVESDQDFVYLSLERCT 550
           +  + V  +   + L LE   
Sbjct: 92  INLHEVYENTSEIILILEYAA 112

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 19/117 (16%)

Query: 475 VVFNKEIAKGSNGTVVLEGNY--EGRSVAVKRLVKTHHDVA---LKEIQNLIASDQHPNI 529
           ++  + + KG  G   ++  +   G  + +K L++   +     LKE++ ++   +HPN+
Sbjct: 12  LIHGEVLGKGCFGQA-IKVTHRETGEVMVMKELIRFDEETQRTFLKEVK-VMRCLEHPNV 69

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLL 586
           +++ GV      +    E          Y+  G+    +  K  DS      R+   
Sbjct: 70  LKFIGVLYKDKRLNFITE----------YIKGGTLRGII--KSMDSQYPWSQRVSFA 114

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRS---------VAVKRLVKTHHDVA----LKEIQNLI 521
           +   K + +G+ G VV      G           VAVK L     +      + E++ + 
Sbjct: 37  LTLGKPLGEGAFGQVV-MAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 95

Query: 522 ASDQHPNIVRWYGVESDQDFVYLSLERCTC-SLND 555
              +H NI+   G  +    +Y+ +E  +  +L +
Sbjct: 96  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLRE 130

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 477 FNKEIAKGSNGTVVL-EGNYEGRSVAVK----RLVKTHHDVALKEIQNLIA---SDQHPN 528
             + I KG    V        G+  AVK        +   ++ ++++   +     +HP+
Sbjct: 28  LCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPH 87

Query: 529 IVRWYGVESDQDFVYLSLERCT 550
           IV      S    +Y+  E   
Sbjct: 88  IVELLETYSSDGMLYMVFEFMD 109

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVA--LKEIQNLIASDQ 525
           + + +  +  +++ +G  G V         ++   K +     D     KEI  ++   +
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEIS-ILNIAR 59

Query: 526 HPNIVRWYGVESDQDFVYLSLERCT 550
           H NI+  +      + + +  E  +
Sbjct: 60  HRNILHLHESFESMEELVMIFEFIS 84

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA-LKEIQNLIASDQHPNIVRWY 533
           +   + I KG  G  V+ G+Y G  VAVK +       A L E   +    +H N+V+  
Sbjct: 195 LKLLQTIGKGEFG-DVMLGDYRGNKVAVKCIKNDATAQAFLAEASVM-TQLRHSNLVQLL 252

Query: 534 GVES-DQDFVYLSLE 547
           GV   ++  +Y+  E
Sbjct: 253 GVIVEEKGGLYIVTE 267

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 475 VVFNKEIAKGSNGTVV------LEGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASD 524
           + + ++I +G+ G V       L        VAVK L +           +E   L+A  
Sbjct: 49  IEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA-LMAEF 107

Query: 525 QHPNIVRWYGVESDQDFVYLSLE 547
            +PNIV+  GV +    + L  E
Sbjct: 108 DNPNIVKLLGVCAVGKPMCLLFE 130

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA-LKEIQNLIASDQHPNIVRWY 533
           +   + I KG  G  V+ G+Y G  VAVK +       A L E   ++   +H N+V+  
Sbjct: 23  LKLLQTIGKGEFG-DVMLGDYRGNKVAVKCIKNDATAQAFLAEAS-VMTQLRHSNLVQLL 80

Query: 534 GVESDQD-FVYLSLE 547
           GV  ++   +Y+  E
Sbjct: 81  GVIVEEKGGLYIVTE 95

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 389 SKQVKSKKQNEEHITKTGIPKKKKSRRPGYNRNTTNSEKMQNIIPNESKVGETDGLSHIT 448
           +K  +SK             ++K+ R    +           +  N           +  
Sbjct: 86  NKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYY- 144

Query: 449 GNGEKFLLTFTDLIDDRVDGRRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVK 507
               + +    D + D  D          ++E+  G+ G V        G + A K ++ 
Sbjct: 145 ---PQPVEIKHDHVLDHYD---------IHEELGTGAFGVVHRVTERATGNNFAAKFVMT 192

Query: 508 TH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT 550
            H    +   KEIQ  ++  +HP +V  +    D + + +  E  +
Sbjct: 193 PHESDKETVRKEIQ-TMSVLRHPTLVNLHDAFEDDNEMVMIYEFMS 237

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEG-RSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVR 531
           + F KE+  G  G VV  G + G   VA+K + +     D  ++E + ++ +  H  +V+
Sbjct: 26  LTFLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAK-VMMNLSHEKLVQ 83

Query: 532 WYGVESDQDFVYLSLE 547
            YGV + Q  +++  E
Sbjct: 84  LYGVCTKQRPIFIITE 99

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIASDQHPNIVRW 532
             I  GS G         +G+ +  K L             + E+ NL+   +HPNIVR+
Sbjct: 12  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEV-NLLRELKHPNIVRY 70

Query: 533 YG--VESDQDFVYLSLERCTC-SLNDLI 557
           Y   ++     +Y+ +E C    L  +I
Sbjct: 71  YDRIIDRTNTTLYIVMEYCEGGDLASVI 98

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 465 RVDGRRIGKLVVFNKEIAKGSNGTVVLEGNYE-GRSVAVKRLVKTH-------HDVALK- 515
             +G    K       +  G+ G V    + E  + V VK + K          D  L  
Sbjct: 17  ACEGEYSQKYSTM-SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGK 75

Query: 516 ---EIQNLIASDQHPNIVRWYGVESDQDFVYLSLE 547
              EI  L +  +H NI++   +  +Q F  L +E
Sbjct: 76  VTLEIAIL-SRVEHANIIKVLDIFENQGFFQLVME 109

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 479 KEIAKGSNGTVVLEGNYE-GRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNI 529
           + + KG  G V L    +    +A+K L K+        H      EIQ+ +   +HPNI
Sbjct: 20  RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL---RHPNI 76

Query: 530 VRWYGVESDQDFVYLSLE 547
           +R Y    D+  +YL LE
Sbjct: 77  LRMYNYFHDRKRIYLMLE 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	613
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	99.92
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.88
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.88
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.87
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.87
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.86
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.86
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.86
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.86
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.85
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.85
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.84
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.84
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.84
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.83
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.83
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.82
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.8
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.79
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.78
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.77
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.73
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.73
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.73
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.72
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.72
3uqc_A	286	Probable conserved transmembrane protein; structur	99.71
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.71
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.71
3niz_A	311	Rhodanese family protein; structural genomics, str	99.71
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.71
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.71
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.71
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.71
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.7
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.7
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.7
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.7
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.7
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.7
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.7
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.7
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.7
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.7
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.7
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.7
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.69
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.69
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.69
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.69
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.69
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.69
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.69
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.69
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.69
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.69
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.68
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.68
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.68
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.68
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.68
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.68
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.68
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.68
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.68
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.68
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.68
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.68
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.68
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.68
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.67
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.67
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.67
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.67
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.67
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.67
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.67
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.67
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.67
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.67
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.67
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.67
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.67
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.66
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.66
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.66
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.66
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.66
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.66
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.66
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.66
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.66
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.66
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.66
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.66
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.66
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.66
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.66
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.66
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.65
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.65
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.65
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.65
3bhy_A	283	Death-associated protein kinase 3; death associate	99.65
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.65
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.65
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.65
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.65
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.65
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.65
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.65
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.65
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.65
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.64
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.64
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.64
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.64
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.64
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.64
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.64
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.64
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.64
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.64
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.64
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.64
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.64
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.64
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.64
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.64
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.64
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.64
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.64
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.64
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.63
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.63
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.63
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.63
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.63
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.63
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.63
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.63
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.63
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.63
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.63
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.63
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.63
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.63
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.63
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.63
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.63
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.63
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.63
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.62
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.62
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.62
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.62
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.62
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.62
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.62
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.62
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.62
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.62
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.62
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.62
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.62
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.62
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.62
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.62
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.62
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.62
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.61
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.61
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.61
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.61
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.61
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.61
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.61
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.61
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.61
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.61
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.61
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.61
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.61
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.61
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.61
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.61
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.61
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.6
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.6
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.6
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.6
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.6
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.6
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.6
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.6
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.6
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.6
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.6
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.6
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.6
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.6
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.6
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.6
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.6
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.59
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.59
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.59
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.59
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.59
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.59
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.59
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.59
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.59
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.59
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.59
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.59
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.59
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.59
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.59
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.59
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.58
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.58
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.58
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.58
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.58
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.57
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.57
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.57
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.57
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.57
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.57
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.57
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.56
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.56
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.56
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.56
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.56
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.56
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.56
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.56
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.55
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.55
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.55
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.55
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.54
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.54
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.53
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.52
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.52
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.51
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.51
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.51
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.49
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.48
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.45
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.44
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.44
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.33
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.32
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	99.26
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.26
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.24
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.23
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.14
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.52
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.47
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.43
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.4
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.29
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.2
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.16
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.16
3hx6_A	570	Type 4 fimbrial biogenesis protein PILY1; beta pro	98.13
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.08
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.07
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.02
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.99
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.85
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.85
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.82
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.77
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.76
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.74
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.74
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.72
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.71
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.7
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.69
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.69
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.69
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.68
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.65
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.64
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.63
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.63
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.62
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.59
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.56
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.55
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.54
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.52
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.51
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.51
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.5
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.46
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.45
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.45
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.45
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.44
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.39
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.34
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.33
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.32
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.3
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.27
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.24
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.24
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.21
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.21
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.18
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.15
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.14
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.14
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.14
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.11
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.08
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.08
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.07
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.05
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.03
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.02
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.01
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.01
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.0
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.99
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.98
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.96
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.93
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.9
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.89
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.85
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.84
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.81
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.77
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.77
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.7
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.7
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.66
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.62
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.59
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.57
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.54
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.48
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.46
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.43
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.4
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.39
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.35
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.33
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.31
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.3
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.23
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.22
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.22
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.12
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.11
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.11
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.11
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.1
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.06
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.03
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.98
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.95
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.88
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.87
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.87
3jro_A	753	Fusion protein of protein transport protein SEC13	95.86
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	95.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	95.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.67
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.65
3jro_A	753	Fusion protein of protein transport protein SEC13	95.6
3elq_A	571	Arylsulfate sulfotransferase; beta propeller, prot	95.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	95.53
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	95.51
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.51
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.43
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.42
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	95.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.38
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.35
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.3
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	95.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.26
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	95.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.09
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.04
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.02
2zuy_A	620	YESX protein; beta-propeller, lyase; 1.65A {Bacill	94.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	94.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	94.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	94.75
1k32_A	1045	Tricorn protease; protein degradation, substrate g	94.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.62
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	94.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.49
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	94.48
2pm7_B	297	Protein transport protein SEC13, protein transport	94.43
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.36
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.22
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	94.21
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	94.14
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.04
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	93.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.84
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	93.83
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.79
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	93.63
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	93.58
3hx6_A	570	Type 4 fimbrial biogenesis protein PILY1; beta pro	93.5
2pm7_B	297	Protein transport protein SEC13, protein transport	93.47
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.43
3elq_A	571	Arylsulfate sulfotransferase; beta propeller, prot	93.38
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	93.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.2
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	93.17
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	93.03
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	92.88
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	92.88
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	92.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	92.51

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-24  Score=226.67  Aligned_cols=176  Identities=21%  Similarity=0.345  Sum_probs=130.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC--CceeeccccccCCCCCeEEEe-cCCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG--RPIYSSYQASFNSNASEFYLD-VDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~--~~i~s~~~~~~~~~~~~~~i~-~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .+++|||+|.||.|||+|+.||+++|+++++  .|+.+........+ ..+|++ ++.||.||+++..+|.. +|+++++
T Consensus         9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~   86 (339)
T 2be1_A            9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIR   86 (339)
T ss_dssp             EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEE-EEEEEHH
T ss_pred             eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcE-Eeeeccc
Confidence            4689999999999999999999999999987  34443211111222 245544 56899999999999966 9999999


Q ss_pred             HHhhhCceee-------------cCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccc
Q 007199          124 EYIRRMPYIS-------------KDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       124 ~~v~~sP~~~-------------~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                      +++.+||++.             .||.||+|++++++||||+.||+++|+|..+.+..  ++.. ... .|+...  . +
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~--~~~~-~~e-~~~~~~--d-~  159 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNG--YFGS-QSV-DCSPEE--K-I  159 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcc--cccc-ccc-cccccc--c-c
Confidence            9999999983             59999999999999999999999999998875421  0000 000 122100  0 0


Q ss_pred             ccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEeceeeeeecc
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRC  238 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~a~~~~  238 (613)
                      +     ....++.|||||++|.|++++ ++|+ +||++|++|.+...+
T Consensus       160 ~-----~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~  200 (339)
T 2be1_A          160 K-----LQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD  200 (339)
T ss_dssp             ----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT
T ss_pred             c-----cccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc
Confidence            0     001246899999999999999 5797 999999999987765

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.88  E-value=1.7e-22  Score=211.98  Aligned_cols=125  Identities=20%  Similarity=0.283  Sum_probs=98.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      ++|++.+.||+|+||+||++. ..+|+.||||++.+.     ..+.+.+|+++|.++ +|||||++++++.+.+.+||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIV~~~~~~~~~~~~yiVm  102 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM-KHPNIVQYRESFEENGSLYIVM  102 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHC-CCCCCCcEEEEEEECCEEEEEE
Confidence            359999999999999999984 688999999999863     234789999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.++|+..    ....+++..+..++   +.||.|||+++|+|||||    |+..+|
T Consensus       103 Ey~~gg~L~~~i~~~----~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g  162 (350)
T 4b9d_A          103 DYCEGGDLFKRINAQ----KGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDG  162 (350)
T ss_dssp             ECCTTCBHHHHHHHT----TTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTC
T ss_pred             eCCCCCcHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCC
Confidence            9999 6999999864    23345665554444   489999999999988887    555554

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.88  E-value=2.6e-22  Score=207.28  Aligned_cols=123  Identities=21%  Similarity=0.164  Sum_probs=104.2

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.++||+|+||+||++ ...+|+.||||++.+      ...+.+.+|+++|.++ +|||||+++++|.+++.+|||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-DHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEeCCEEEEE
Confidence            34999999999999999998 478899999999975      2345789999999877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.++|+..+      .+++..+..++.   .||.|||+++|+|||||    |++.+|
T Consensus       111 mEy~~gG~L~~~i~~~~------~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g  169 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIG------SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM  169 (311)
T ss_dssp             ECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS
T ss_pred             EecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCC
Confidence            99999 69999998643      466666666554   89999999999888876    555544

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.87  E-value=6.8e-22  Score=207.12  Aligned_cols=122  Identities=22%  Similarity=0.243  Sum_probs=103.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|+..+.||+|+||+||+|. ..+|+.||||++..   ...+.+.+|+++|.++ +|||||+++++|.+.+.+||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l-~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY-QHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEeC
Confidence            459999999999999999984 67899999999975   3445789999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+ |+|.++++..       .+++..+..++.   .||.|||+++|||||||    |+..+|
T Consensus       153 ~~gg~L~~~l~~~-------~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g  207 (346)
T 4fih_A          153 LEGGALTDIVTHT-------RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG  207 (346)
T ss_dssp             CTTEEHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC
T ss_pred             CCCCcHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCC
Confidence            99 6999999753       356666665555   89999999999888877    455544

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.87  E-value=5.7e-22  Score=201.64  Aligned_cols=119  Identities=23%  Similarity=0.276  Sum_probs=97.1

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      .+++ |++.+.||+|+||+||++. ..+|+.||||++.+.      ..+.+.+|+++|.++ +|||||++++++.+++.+
T Consensus        11 ~ig~-Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~~~~~~~~~~~~   88 (275)
T 3hyh_A           11 HIGN-YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLL-RHPHIIKLYDVIKSKDEI   88 (275)
T ss_dssp             ---C-CEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEE
T ss_pred             EeeC-eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHC-CCCCCCeEEEEEEECCEE
Confidence            4443 8999999999999999984 678999999999752      234789999999888 999999999999999999


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||||+|+|.++|..+      ..+++..+..++.   .|+.|||+++|+|||||
T Consensus        89 ~ivmEy~~g~L~~~l~~~------~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiK  139 (275)
T 3hyh_A           89 IMVIEYAGNELFDYIVQR------DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLK  139 (275)
T ss_dssp             EEEEECCCEEHHHHHHHS------CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEEEeCCCCCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC
Confidence            999999999999999854      2466666666655   89999999999887765

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=209.81  Aligned_cols=122  Identities=22%  Similarity=0.243  Sum_probs=103.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|+..+.||+|+||+||+|. ..+|+.||||++..   ...+.+.+|+++|.++ +|||||+++++|.+.+.+||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l-~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY-QHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhC-CCCCCCceEEEEEECCEEEEEEeC
Confidence            459999999999999999984 67899999999975   3455789999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+ |+|.++++..       .+.+..+..++.   .||.|||+++|||||||    |+..+|
T Consensus       230 ~~gG~L~~~i~~~-------~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g  284 (423)
T 4fie_A          230 LEGGALTDIVTHT-------RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG  284 (423)
T ss_dssp             CTTEEHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTC
T ss_pred             CCCCcHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCC
Confidence            99 6999999753       356666665555   89999999999888877    555554

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.86  E-value=7e-22  Score=203.73  Aligned_cols=123  Identities=22%  Similarity=0.245  Sum_probs=96.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|.+.+.||+|+||+||+|..      .+++.||||+++..   ..++|.+|+++|.++ +|||||+++++|.+.+.+|
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l-~HpnIV~l~g~~~~~~~~~   91 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL-QHEHIVKFYGVCVEGDPLI   91 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhC-CCCCCccEEEEEeeCCEEE
Confidence            4589999999999999999853      45789999999864   335799999999888 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcC-------CCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSG-------SFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~-------~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |||.++|+.++.       ......+++....+++.   .||.|||+++|+|||||
T Consensus        92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlK  155 (299)
T 4asz_A           92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLA  155 (299)
T ss_dssp             EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccC
Confidence            9999999 799999987420       01223466666555554   89999999999877765

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.86  E-value=1.3e-21  Score=200.50  Aligned_cols=117  Identities=22%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~  542 (613)
                      +.|.+.++||+|+||+||+| ...+++.||||++...     ..+.|.+|+++|.++ +|||||+++++|.+    .+.+
T Consensus        26 r~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIV~~~~~~~~~~~~~~~~  104 (290)
T 3fpq_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL-QHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEEEEETTEEEE
T ss_pred             ceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEeeccCCCcEE
Confidence            34688889999999999998 4678999999999752     234789999999888 99999999999875    3468


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK  596 (613)
                      |||||||+ |+|.++|+...      .+++..+..++.   .||.|||+++  |+|||||
T Consensus       105 ~lvmEy~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlK  158 (290)
T 3fpq_A          105 VLVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK  158 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCC
T ss_pred             EEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccC
Confidence            99999999 69999998643      456665554443   8999999987  8777766

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=204.07  Aligned_cols=123  Identities=21%  Similarity=0.208  Sum_probs=98.5

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.+.+.++||+|+||+||+|..      .+++.||||+++..   ..++|.+|+++|.++ +|||||+++++|.+.+.+|
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l-~HpnIV~l~g~~~~~~~~~  119 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTML-QHQHIVRFFGVCTEGRPLL  119 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEE
Confidence            4488999999999999999852      46789999999863   345799999999887 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCC---------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSF---------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~---------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |+|.++|+.++...         ....+++....+++.   .||.|||+.+|||||||
T Consensus       120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK  185 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLA  185 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeeccccc
Confidence            9999999 79999998653110         123456665555554   89999999998777766

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.85  E-value=2.6e-21  Score=200.22  Aligned_cols=122  Identities=20%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             eEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .+++.+.||+|+||+||+|..      .+++.||||+++..    ..++|.+|+.+|.++ +|||||+++|+|...+.++
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l-~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARL-QHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhC-CCCCCCCcceEEEECCEEE
Confidence            378889999999999999753      45788999999752    346899999999888 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |||.++|+.....          .....++.....+++.   .||.|||+.+|||||||
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK  172 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLA  172 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999 7999999864311          1123455555555444   89999999999877765

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.85  E-value=2.6e-21  Score=202.03  Aligned_cols=121  Identities=21%  Similarity=0.241  Sum_probs=101.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.|...+.||+|+||+||++. ..+|+.||||+++.+..  ..+|+++|.++ +|||||++++++.+.+.+|||||||+ 
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~--~~~E~~il~~l-~HpnIV~l~~~~~~~~~~~ivmEy~~g  134 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF--RVEELVACAGL-SSPRIVPLYGAVREGPWVNIFMELLEG  134 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--CTHHHHTTTTC-CCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh--HHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEeccCC
Confidence            458899999999999999984 78899999999986432  35799888777 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.++|+..+      .+++..+..++.   .||.|||+++|||||||    |++.+|
T Consensus       135 g~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g  187 (336)
T 4g3f_A          135 GSLGQLIKQMG------CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDG  187 (336)
T ss_dssp             CBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTS
T ss_pred             CcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCC
Confidence            69999998643      466666666555   89999999999888877    555544

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.84  E-value=2.4e-21  Score=199.77  Aligned_cols=123  Identities=21%  Similarity=0.141  Sum_probs=96.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|++.+.||+|+||+||++..    .+++.||||++++.     ....+.+|+++|.++ +|||||++++++.+++.+|
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEV-NHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCC-CCTTEECEEEEEEETTEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHC-CCCCCCeEEEEEEECCEEE
Confidence            3599999999999999999743    35789999999752     233788999888777 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||||+ |+|.++|+..+      .+++..+..++.   .||.|||+++|+|||||    |++.+|
T Consensus       103 ivmEy~~gg~L~~~l~~~~------~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g  163 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKEV------MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEG  163 (304)
T ss_dssp             EEECCCTTCEEHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTS
T ss_pred             EEEEcCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCC
Confidence            9999999 69999998643      466666665554   89999999999888776    444444

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.84  E-value=8.4e-21  Score=195.73  Aligned_cols=125  Identities=16%  Similarity=0.265  Sum_probs=96.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--------
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQD--------  540 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--------  540 (613)
                      .|++.+.||+|+||+||+|. ..+|+.||||+++...    .+.+.+|+++|.++ +|||||+++++|...+        
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l-~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEEEC--------
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEecCcccccccc
Confidence            38999999999999999984 6789999999997532    34788999999877 9999999999987644        


Q ss_pred             ----EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          541 ----FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 ----~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                          ++|||||||+ |+|.++++...   .........+   .+.++.||.|||+++|+|||||    |+..++
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~  155 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRC---TIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDD  155 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCC---SGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcC---CCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCC
Confidence                4799999999 69999998643   2233343333   3344489999999999887776    454444

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.84  E-value=6.2e-21  Score=197.06  Aligned_cols=115  Identities=23%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.+.+.+.||+|+||+||+|..  ...||||+++..     ..+.|.+|+++|.++ +|||||++++++. ++.+|||||
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~--~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l-~HpNIV~l~g~~~-~~~~~iVmE  111 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKW--HGDVAVKILKVVDPTPEQFQAFRNEVAVLRKT-RHVNILLFMGYMT-KDNLAIVTQ  111 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEES--SSEEEEEECCCSSCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEE--CCcEEEEEEEecCCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEE-CCeEEEEEE
Confidence            3478899999999999999753  346999998752     335799999999887 9999999999875 457899999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.++|+..     ...+++....+++.   .||.|||+.+|||||||
T Consensus       112 y~~gGsL~~~l~~~-----~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlK  159 (307)
T 3omv_A          112 WCEGSSLYKHLHVQ-----ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMK  159 (307)
T ss_dssp             CCSSCBHHHHHHTS-----CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCC
T ss_pred             cCCCCCHHHHHhhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccC
Confidence            999 7999999863     23456655555554   89999999999877766

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=201.76  Aligned_cols=120  Identities=20%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ----  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~----  539 (613)
                      .+++.|++.+.||+|+||+||+| ...+|+.||||+++..     ..+.+.+|+++|.++ +|||||++++++...    
T Consensus        51 ~i~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~l~~~~~~~~~~~  129 (398)
T 4b99_A           51 DVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHF-KHDNIIAIKDILRPTVPYG  129 (398)
T ss_dssp             CCCSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSSCTT
T ss_pred             CCCCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhc-CCCCcceEeeeeecccccc
Confidence            35567999999999999999998 4788999999999753     234688999999888 999999999998643    


Q ss_pred             --CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 --DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 --~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        +.+|||||||+|+|.++|...      ..+++..+..++.   .||.|||+++|||||||
T Consensus       130 ~~~~~~ivmE~~~g~L~~~i~~~------~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlK  185 (398)
T 4b99_A          130 EFKSVYVVLDLMESDLHQIIHSS------QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLK  185 (398)
T ss_dssp             TCCCEEEEEECCSEEHHHHHTSS------SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred             cCCEEEEEEeCCCCCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcC
Confidence              579999999999999999743      3566666655554   89999999999887776

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.83  E-value=4.6e-20  Score=190.67  Aligned_cols=129  Identities=18%  Similarity=0.190  Sum_probs=95.8

Q ss_pred             CceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHH--HhcCCCCcceeEEEEEEeCC----EEEEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNL--IASDQHPNIVRWYGVESDQD----FVYLS  545 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L--~~l~~HpnIV~l~g~~~~~~----~~~LV  545 (613)
                      .+.|.+.+.||+|+||+||+|. .+|+.||||++.....+.+.+|.+++  .++ +|||||+++++|...+    .+|||
T Consensus         2 ar~i~L~~~iG~G~fG~Vy~~~-~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l-~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            2 ARTIVLQESIGKGRFGEVWRGK-WRGEEVAVKIFSSREERSWFREAEIYQTVML-RHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEE-ETTEEEEEEEECGGGHHHHHHHHHHHTSTTC-CCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEE-ECCEEEEEEEECccchhhHHHHHHHHHHhcC-CCCCCCcEEEEEEecCCCceEEEEE
Confidence            3458899999999999999974 57999999999876666555555444  344 9999999999998754    68999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCc-eeeccceecCCCcCcceee
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVME-NTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~i-iHrDlKllh~dg~PsniLl  609 (613)
                      ||||+ |+|.++|+..       .++.....+++.   .||.|||+... ..++.+++|||+||+||||
T Consensus        80 ~Ey~~~gsL~~~l~~~-------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl  141 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV  141 (303)
T ss_dssp             EECCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEE
T ss_pred             ecCCCCCcHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEE
Confidence            99999 7999999853       244444444444   89999998721 1223344555666777766

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=199.71  Aligned_cols=164  Identities=23%  Similarity=0.439  Sum_probs=108.2

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeeccc
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSS  121 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~  121 (613)
                      ++++.+++||+++.||.|||+|+.||+++|+++. +++.++.   ...+ +.+|+.++.||.||++|..+|+. .+|++.
T Consensus         4 sP~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p---~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            4 TVTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVP---THVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             ----CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC---------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             CCeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecc---eEcC-CCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            4557899999999999999999999999999998 5665541   1111 24677778899999999999986 356677


Q ss_pred             HHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          122 AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      +++.+.++|++..|+.||+|+.++++|++|++||+++|++.......           .++                 .+
T Consensus        79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~-----------~~p-----------------~~  130 (369)
T 2hz6_A           79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADS-----------LSP-----------------ST  130 (369)
T ss_dssp             HHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------------------------------
T ss_pred             CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCccc-----------ccc-----------------cC
Confidence            88889999998448999999999999999999999999997654221           111                 14


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceEEEEEeceeeeeeccc
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAEFRCQ  239 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~a~~~~~  239 (613)
                      +.||+|+.|+.|+|+|+++|+++|++.+..+.+..++.
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~  168 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPED  168 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCC
T ss_pred             CEEEEEecCCEEEEEECCCCCEEEeEecccccCccccC
Confidence            58999999999999999999999999988876554443

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.80  E-value=1.9e-19  Score=189.75  Aligned_cols=124  Identities=20%  Similarity=0.242  Sum_probs=96.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEee------CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNY------EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-DF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~------~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~  541 (613)
                      +.|++.+.||+|+||+||+|...      .++.||||++...    ..+.|.+|+++|.++.+|||||+++++|... +.
T Consensus        64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~  143 (353)
T 4ase_A           64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP  143 (353)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSC
T ss_pred             HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCE
Confidence            55999999999999999998522      3468999999863    2347899999999995669999999999765 57


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCC----------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSF----------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~----------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||||+ |+|.++|+..+...          ....+++.....++.   .||.|||+++|||||||
T Consensus       144 ~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK  212 (353)
T 4ase_A          144 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA  212 (353)
T ss_dssp             CEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccC
Confidence            899999999 79999998753210          122355555555443   89999999999887776

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.79  E-value=6e-19  Score=186.64  Aligned_cols=118  Identities=16%  Similarity=0.180  Sum_probs=97.6

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .+.+.|++.+.||+|+||+||+|..    .+++.||||++.+. ....+.+|+++|..+.+|||||+++++|.+.+++||
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~l   97 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVI   97 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEE
Confidence            4556799999999999999999842    35678999998763 445788999999888789999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.++++.         +++..+..++   +.||.|||+++|+|||||
T Consensus        98 vmE~~~g~~L~~~~~~---------l~~~~~~~~~~qll~al~ylH~~gIiHRDiK  144 (361)
T 4f9c_A           98 AMPYLEHESFLDILNS---------LSFQEVREYMLNLFKALKRIHQFGIVHRDVK  144 (361)
T ss_dssp             EEECCCCCCHHHHHTT---------CCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEeCCCcccHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHHCCeEeCcCC
Confidence            999999 699999842         4455554444   489999999999776665

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.78  E-value=8.9e-19  Score=196.80  Aligned_cols=123  Identities=17%  Similarity=0.097  Sum_probs=98.5

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHH---HHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKE---IQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~E---i~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.++||+|+||+||+| ...+|+.||||++.+.      ....+.+|   +.++.. ++|||||+++++|.+.+.+
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~-~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST-GDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSS-SCCTTBCCEEEEEECSSEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhh-CCCCCEeEEEEEEEECCEE
Confidence            45999999999999999998 4778999999999852      22234444   333333 4999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||||||+ |+|.++|....      .+++..+..++.   .||.|||+.+|||||||    |++.+|
T Consensus       268 ylVmEy~~GGdL~~~l~~~~------~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G  329 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHG------VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG  329 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTS
T ss_pred             EEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCC
Confidence            99999999 69999998643      466766666555   89999999999888876    555555

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.77  E-value=1.1e-18  Score=195.61  Aligned_cols=118  Identities=15%  Similarity=0.158  Sum_probs=99.7

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      ++|++.+.||+|+||+||+| ...+|+.||+|++...   ..+.+.+|+++|..+ +|||||+++++|.+.+.+||||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l-~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL-RHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHT-CCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhC-CCCCCCeEEEEEEECCEEEEEEee
Confidence            45999999999999999998 4788999999999863   334788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.++|...     ...+++..+..++.   .||.|||+++|+|||||
T Consensus       236 ~~gg~L~~~i~~~-----~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlK  282 (573)
T 3uto_A          236 MSGGELFEKVADE-----HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLK  282 (573)
T ss_dssp             CCCCBHHHHHTCT-----TSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cCCCcHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC
Confidence            99 6999999642     23455655555444   89999999999888776

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.73  E-value=3.3e-17  Score=170.40  Aligned_cols=120  Identities=14%  Similarity=0.056  Sum_probs=99.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.+.|.+.+.||+|+||.||++. ..+++.||+|.+....  .+.+.+|+++|..+ +||||+++++++.+.+..++|||
T Consensus         3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA-RHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHS-CCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhC-CCCCCCeEeEEEecCCEEEEEEE
Confidence            44569999999999999999974 6678999999998643  34688999999877 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++...     ...+++..+..++.   .|+.|||+.+|+|||||
T Consensus        82 ~~~g~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlk  129 (321)
T 1tki_A           82 FISGLDIFERINTS-----AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIR  129 (321)
T ss_dssp             CCCCCBHHHHHTSS-----SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             eCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCC
Confidence            999 5999999642     23455555555544   89999999999887766

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.73  E-value=2.6e-17  Score=173.74  Aligned_cols=160  Identities=14%  Similarity=0.175  Sum_probs=125.6

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC----------ceeeccccccCCCCCeEEEecCCCCeEEEEecCC
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGR----------PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF  112 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~----------~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~  112 (613)
                      ++.+.++.||+++.+|.|+|+|+.||+++|+++.+.          ++.++.   .. +.+.+|+. +.||.||++|+.+
T Consensus        48 ~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~v~v~-~~~g~l~a~d~~t  122 (376)
T 3q7m_A           48 HPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TV-SGGHVYIG-SEKAQVYALNTSD  122 (376)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EE-ETTEEEEE-ETTSEEEEEETTT
T ss_pred             ccEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eE-eCCEEEEE-cCCCEEEEEECCC
Confidence            455789999999999999999999999999999743          333331   11 12245655 4599999999999


Q ss_pred             CceeeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccc
Q 007199          113 GKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVES  192 (613)
Q Consensus       113 G~l~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (613)
                      |++ +|.+.++..+.++|++. ++.||+|+.++.++++|++||+++|++........    ..  .          ...|
T Consensus       123 G~~-~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~----~~--~----------~~~~  184 (376)
T 3q7m_A          123 GTV-AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS----LR--G----------ESAP  184 (376)
T ss_dssp             CCE-EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC---------C--C----------CCCC
T ss_pred             CCE-EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee----ec--C----------CCCc
Confidence            999 99999988888999998 88999999999999999999999999987543210    00  0          0000


Q ss_pred             ccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          193 GVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       193 ~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                           ...++.||+|..++.|+++|+++|+.+|.....
T Consensus       185 -----~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~  217 (376)
T 3q7m_A          185 -----TTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRIS  217 (376)
T ss_dssp             -----EEETTEEEECCTTTEEEEEETTTCCEEEEEECC
T ss_pred             -----EEECCEEEEEcCCCEEEEEECCCCcEEEEEecc
Confidence                 112568999999999999999999999998865

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.72  E-value=4.2e-17  Score=172.30  Aligned_cols=128  Identities=14%  Similarity=0.064  Sum_probs=104.0

Q ss_pred             ceEEEeeeEeecCceEEEEE------EeeCCcEEEEEEeeccchHHHHHHHHHHHhcCC---CCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE------GNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQ---HPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~------~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~---HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|.+.+.||+|+||+||++      ...+++.||||++......++.+|++++..+ +   |+||+++++++...+..|
T Consensus        65 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l-~~~~~~~iv~~~~~~~~~~~~~  143 (365)
T 3e7e_A           65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERL-KPSMQHMFMKFYSAHLFQNGSV  143 (365)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHS-CGGGGGGBCCEEEEEECSSCEE
T ss_pred             EEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHh-hhhhhhhhhhhheeeecCCCcE
Confidence            55999999999999999998      4677899999999988888899999888777 5   899999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||||||+ |+|.++++..+.. ....+++..+..++.   .||.|||+.+|+|||||       |+||||
T Consensus       144 lv~e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiK-------p~NIll  205 (365)
T 3e7e_A          144 LVGELYSYGTLLNAINLYKNT-PEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIK-------PDNFIL  205 (365)
T ss_dssp             EEECCCCSCBHHHHHHHHHTS-TTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS-------GGGEEE
T ss_pred             EEEeccCCCcHHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCC-------HHHEEe
Confidence            9999999 7999999865321 233466666655555   89999999998777665       556555

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.72  E-value=4.5e-17  Score=171.42  Aligned_cols=124  Identities=17%  Similarity=0.090  Sum_probs=101.0

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      .+.+.|.+.+.||+|+||+||++. ..+|+.||||++...        ..+.+.+|++++..+ +||||+++++++...+
T Consensus        21 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~   99 (351)
T 3c0i_A           21 LFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML-KHPHIVELLETYSSDG   99 (351)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHC-CCTTBCCEEEEEEETT
T ss_pred             ccccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCC
Confidence            444669999999999999999984 678999999998742        356799999999888 9999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|||||||+ |+|.+++.....  ....+++..+..++   +.||.|||+.+|+|||||
T Consensus       100 ~~~lv~e~~~g~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlk  157 (351)
T 3c0i_A          100 MLYMVFEFMDGADLCFEIVKRAD--AGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVK  157 (351)
T ss_dssp             EEEEEEECCSSCBHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEEEeCCCCCCHHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC
Confidence            9999999999 699988876421  12235555554444   389999999999887776

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.71  E-value=2.8e-17  Score=168.17  Aligned_cols=121  Identities=10%  Similarity=-0.132  Sum_probs=96.4

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      .+...|.+.+.||+|+||.||++. ..+++.||||++....      .+.+.+|++.+.++ +||||+++++++...+..
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~hp~iv~~~~~~~~~~~~  106 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRI-DKPGVARVLDVVHTRAGG  106 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEEETTEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcC-CCCCcceeeEEEEECCcE
Confidence            455569999999999999999985 5668999999998632      25788999998777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||||+ |+|.++++..     ........+...++.||.|||+.+|+|||||
T Consensus       107 ~lv~e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~givH~Dik  156 (286)
T 3uqc_A          107 LVVAEWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRAGVALSIDH  156 (286)
T ss_dssp             EEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             EEEEEecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence            99999999 5999999531     1111122234444499999999999877765

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.71  E-value=6.9e-17  Score=172.15  Aligned_cols=119  Identities=18%  Similarity=0.086  Sum_probs=99.1

Q ss_pred             ceEEEeeeEeec--CceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKG--SNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G--~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      ..|++.+.||+|  +||.||++. ..+|+.||||++...     ..+.+.+|+++|..+ +||||+++++++...+..||
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF-NHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhC-CCCCCCcEeEEEEECCEEEE
Confidence            449999999999  999999985 568999999999853     234678899999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.+++....    ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       104 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk  155 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHF----MDGMNELAIAYILQGVLKALDYIHHMGYVHRSVK  155 (389)
T ss_dssp             EEECCTTCBHHHHHHHTC----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EEEccCCCCHHHHHhhhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            999999 69999998752    23455555555444   89999999999877766

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.71  E-value=7.7e-17  Score=170.03  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=99.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+|+.||||++++.      ..+.+.+|.++|..+.+||||+++++++.+.+.+|||
T Consensus        23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv  102 (353)
T 3txo_A           23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFV  102 (353)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEE
Confidence            349999999999999999985 677999999999852      3446788998998776899999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.++++..+      .+++..+..++.   .||.|||+.+|+|||||
T Consensus       103 ~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk  151 (353)
T 3txo_A          103 MEFVNGGDLMFHIQKSR------RFDEARARFYAAEIISALMFLHDKGIIYRDLK  151 (353)
T ss_dssp             EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred             EeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence            99999 69999998643      355555554444   89999999999888776

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.71  E-value=7.1e-17  Score=166.87  Aligned_cols=121  Identities=21%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .+.+.|.+.+.||+|+||+||++...+|+.||||++...     ..+.+.+|+++|.++ +||||+++++++...+..++
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l   96 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKEL-HHPNIVSLIDVIHSERCLTL   96 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHC-CCTTBCCEEEEECCSSCEEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHc-CCCCEeeeeeEEccCCEEEE
Confidence            455669999999999999999987777999999999752     234788999999888 99999999999999999999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+|+|.+++....     ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        97 v~e~~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dik  146 (311)
T 3niz_A           97 VFEFMEKDLKKVLDENK-----TGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLK  146 (311)
T ss_dssp             EEECCSEEHHHHHHTCT-----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             EEcCCCCCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc
Confidence            99999999999987532     3355555544443   89999999999887776

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.71  E-value=6.6e-17  Score=168.74  Aligned_cols=116  Identities=22%  Similarity=0.254  Sum_probs=97.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|.+.+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|+++|..+ +||||+++++++...+..|+|||
T Consensus        16 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~~lv~e   94 (328)
T 3fe3_A           16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKIL-NHPNIVKLFEVIETEKTLYLIME   94 (328)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEEEC
T ss_pred             CEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCEEEEEEE
Confidence            39999999999999999984 588999999999763     234688999999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++....      .+++..+..++.   .|+.|||+.+|+|||||
T Consensus        95 ~~~~~~L~~~l~~~~------~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlk  141 (328)
T 3fe3_A           95 YASGGEVFDYLVAHG------RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLK  141 (328)
T ss_dssp             CCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             CCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCEeccCCC
Confidence            998 69999998653      345555444443   89999999999887776

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=165.98  Aligned_cols=122  Identities=20%  Similarity=0.210  Sum_probs=99.4

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FVY  543 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~~  543 (613)
                      ..+.|.+.+.||+|+||+||++. ..+++.||||++..    ...+.+.+|+++|.++ +||||+++++++...+  ..+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL-NHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC-CCTTBCCEEEEEECTTTCCEE
T ss_pred             CCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc-CCCCcceEEEEeecCCCceEE
Confidence            34569999999999999999984 56799999999985    3346788999999888 9999999999998765  889


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |+|.+++....   ....+++..+..++.   .||.|||+.+|+|||||
T Consensus        86 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk  139 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIK  139 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGG---GTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEeCCCCCCHHHHHHHhc---cccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC
Confidence            9999999 69999998653   222356665555544   89999999998776655

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.71  E-value=9.8e-17  Score=169.77  Aligned_cols=120  Identities=19%  Similarity=0.182  Sum_probs=100.8

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~  539 (613)
                      .+.+.|.+.+.||+|+||+||++. ..+|+.||+|.+...         ..+.+.+|+++|.++ +||||+++++++.+.
T Consensus         9 ~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~l~~~~~~~   87 (361)
T 2yab_A            9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV-LHPNIITLHDVYENR   87 (361)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTC-CCTTBCCEEEEEECS
T ss_pred             ChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhC-CCcCCCcEEEEEEeC
Confidence            455669999999999999999974 678999999999862         235789999999777 999999999999999


Q ss_pred             CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +..|||||||+ |+|.+++...      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        88 ~~~~lv~e~~~gg~L~~~l~~~------~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlk  142 (361)
T 2yab_A           88 TDVVLILELVSGGELFDFLAQK------ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLK  142 (361)
T ss_dssp             SEEEEEEECCCSCBHHHHHTTC------SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CEEEEEEEcCCCCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            99999999998 6999999642      2455555555544   89999999999888877

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.71  E-value=9.8e-17  Score=168.12  Aligned_cols=122  Identities=20%  Similarity=0.139  Sum_probs=101.0

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+|+.||+|++++.      ..+.+.+|+++|..+ +||||+++++++...+..|+||
T Consensus         6 ~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT-RHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             HeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhC-CCCcCcceEEEEEeCCEEEEEE
Confidence            48999999999999999974 568999999999752      345788999999777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...+      .+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus        85 E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g  142 (337)
T 1o6l_A           85 EYANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG  142 (337)
T ss_dssp             ECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             eCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCC
Confidence            9999 69999998643      355555554443   89999999999888877    444444

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.70  E-value=7.2e-17  Score=173.67  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+++.||+|++.+.      ..+.+.+|+.+|..+ +||||++++++|.+.+.+|||
T Consensus        69 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l-~hp~Iv~l~~~~~~~~~~~lV  147 (410)
T 3v8s_A           69 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA-NSPWVVQLFYAFQDDRYLYMV  147 (410)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEECCEEEEE
Confidence            459999999999999999975 567899999999752      233588999888777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.++++..       .+++.++..++.   .||.|||+.+|+|||||
T Consensus       148 ~E~~~gg~L~~~l~~~-------~~~e~~~~~~~~qi~~aL~~LH~~givHrDLK  195 (410)
T 3v8s_A          148 MEYMPGGDLVNLMSNY-------DVPEKWARFYTAEVVLALDAIHSMGFIHRDVK  195 (410)
T ss_dssp             ECCCTTEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EeCCCCCcHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC
Confidence            99998 6999999753       356666655554   89999999999888776

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.70  E-value=8.3e-17  Score=162.88  Aligned_cols=129  Identities=21%  Similarity=0.195  Sum_probs=102.3

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .+.|.+.+.||+|+||+||++. ..+++.||||++...     ....+.+|+..+..+.+||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            3559999999999999999975 568999999999852     2347888998888877999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++.....  ....+++..+..++.   .||.|||+.+|+|||||    ++..++
T Consensus        90 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~  152 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYR--IMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTS  152 (289)
T ss_dssp             EECCTTCBHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC---
T ss_pred             EEecCCCcHHHHHHhhcc--cccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCC
Confidence            99999 599999986531  123455555555544   89999999999888776    555444

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.70  E-value=6e-17  Score=168.62  Aligned_cols=132  Identities=17%  Similarity=0.069  Sum_probs=106.8

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .+++.|.+.+.||+|+||.||++. ..+|+.||||.+.. ...+.+.+|++++.++.+||||+++++++...+..++|||
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            6 MVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             EETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            455669999999999999999985 57899999999985 3445789999999887799999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCcCcc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGHPSA  606 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~Psn  606 (613)
                      ||.|+|.+++....     ..+++..+..++.   .||.|||+.+|+|||||    |+..++....
T Consensus        86 ~~~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~  146 (330)
T 2izr_A           86 LLGPSLEDLFDLCD-----RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQ  146 (330)
T ss_dssp             CCCCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCT
T ss_pred             eCCCCHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCC
Confidence            99779999998642     2455555555544   89999999999888877    5555554433

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.70  E-value=1.4e-16  Score=162.68  Aligned_cols=117  Identities=23%  Similarity=0.130  Sum_probs=97.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|+..+.||+|+||+||++. ..+++.||||++...     ..+.+.+|++++.++ +||||+++++++...+..+||||
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL-KHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcC-CCCCEeeEEeEEEeCCEEEEEEe
Confidence            48999999999999999984 567999999999752     235788999999777 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+|+|.+++....     ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        82 ~~~~~l~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dik  128 (292)
T 3o0g_A           82 FCDQDLKKYFDSCN-----GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK  128 (292)
T ss_dssp             CCSEEHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             cCCCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            99998888887632     3455555555444   89999999999887776

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.70  E-value=1.1e-16  Score=168.20  Aligned_cols=124  Identities=18%  Similarity=0.151  Sum_probs=102.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||+||++. ..+|+.||||++++.      ..+.+.+|.++|..+.+||||+++++++.+.+..|+|
T Consensus        17 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv   96 (345)
T 1xjd_A           17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   96 (345)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEE
Confidence            349999999999999999985 567899999999852      3456788998888777999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus        97 ~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g  155 (345)
T 1xjd_A           97 MEYLNGGDLMYHIQSCH------KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDG  155 (345)
T ss_dssp             EECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             EeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCC
Confidence            99999 69999998643      355555555444   89999999999888877    555554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.70  E-value=1.3e-16  Score=168.51  Aligned_cols=169  Identities=12%  Similarity=0.144  Sum_probs=118.5

Q ss_pred             CCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           45 PPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        45 ~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .+.++.||+++.||.|||+|+.||+++|+++.+..+.++..   ..+ +.+|+ ++.||.||++|+.+|++ +|.+....
T Consensus       100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~---~~~-~~v~v-~~~~g~l~~~d~~tG~~-~W~~~~~~  173 (376)
T 3q7m_A          100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV---VSD-GLVLI-HTSNGQLQALNEADGAV-KWTVNLDM  173 (376)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCE---EET-TEEEE-ECTTSEEEEEETTTCCE-EEEEECCC
T ss_pred             eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCE---EEC-CEEEE-EcCCCeEEEEECCCCcE-EEEEeCCC
Confidence            35789999999999999999999999999998877655421   111 23444 55699999999999999 99988766


Q ss_pred             Hhh-----hCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          125 YIR-----RMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       125 ~v~-----~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                      .+.     ++|++. ++.||+|+.++.++++|++||+++|++....+......     .         ...+ ....+..
T Consensus       174 ~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-----~---------~~~~-~~~~p~~  237 (376)
T 3q7m_A          174 PSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEI-----D---------RLSD-VDTTPVV  237 (376)
T ss_dssp             -----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------------------------C-CCCCCEE
T ss_pred             CceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccc-----c---------cccc-cCCCcEE
Confidence            554     789998 88999999999999999999999999986543110000     0         0000 0000011


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEeceeeee
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFKAE  235 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~a~  235 (613)
                      .++.||++..++.|+++|+++|+++|......+...
T Consensus       238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  273 (376)
T 3q7m_A          238 VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDF  273 (376)
T ss_dssp             ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEE
T ss_pred             ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCc
Confidence            245777777777777777777777777766555443

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.70  E-value=6.7e-17  Score=168.35  Aligned_cols=117  Identities=18%  Similarity=0.114  Sum_probs=96.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.|.+.+.||+|+||+||++. ..+++.||||+++...     .+.+.+|+++|.++ +||||+++++++...+..+|||
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~  112 (329)
T 3gbz_A           34 DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL-QHRNIIELKSVIHHNHRLHLIF  112 (329)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGC-CCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHc-CCCCcceEEEEEecCCEEEEEE
Confidence            459999999999999999984 6789999999997532     23577999999777 9999999999999999999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+|+|.+++....      .+++..+..++   +.||.|||+.+|+|||||
T Consensus       113 e~~~~~L~~~~~~~~------~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlk  159 (329)
T 3gbz_A          113 EYAENDLKKYMDKNP------DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLK  159 (329)
T ss_dssp             ECCSEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             ecCCCCHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCC
Confidence            999999999998643      34555544444   389999999999877766

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.70  E-value=1.6e-16  Score=165.14  Aligned_cols=116  Identities=20%  Similarity=0.149  Sum_probs=97.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+|+.||+|++++.      ..+.+.+|+.+|..+ +||||+++++++.+.+..|+||
T Consensus         7 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            7 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV-THPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC-CBTTBCCEEEEEECSSEEEEEE
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhC-CCCCCceEeEEEEeCCEEEEEE
Confidence            48999999999999999975 568999999999852      345778899888777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus        86 e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk  133 (318)
T 1fot_A           86 DYIEGGELFSLLRKSQ------RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLK  133 (318)
T ss_dssp             CCCCSCBHHHHHHHTS------SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC
T ss_pred             eCCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9999 69999998642      355555544443   89999999999888776

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.70  E-value=1.1e-16  Score=171.56  Aligned_cols=124  Identities=16%  Similarity=0.098  Sum_probs=101.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+++.||||++++.      ..+.+.+|..+|.++.+||||+++++++.+.+.+|||
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV  131 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV  131 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEE
Confidence            349999999999999999985 667889999999863      2236889999998877999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++...+      .+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus       132 ~E~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g  190 (396)
T 4dc2_A          132 IEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG  190 (396)
T ss_dssp             EECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             EEcCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCC
Confidence            99999 69999998643      455555555444   89999999999888776    444444

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.70  E-value=9.6e-17  Score=172.82  Aligned_cols=118  Identities=18%  Similarity=0.124  Sum_probs=98.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+|+.||||++.+.      ..+.+.+|.++|..+ +||||+++++++.+.+.+|||
T Consensus        61 ~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~-~hp~Iv~l~~~~~~~~~~~lV  139 (412)
T 2vd5_A           61 DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNG-DRRWITQLHFAFQDENYLYLV  139 (412)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHS-CTTTBCCEEEEEECSSEEEEE
T ss_pred             hhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhc-CCCCeeeEEEEEeeCCEEEEE
Confidence            459999999999999999985 568999999999752      223578899988777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++...+     ..+++..+..++.   .||.|||+.+|+|||||
T Consensus       140 mE~~~gg~L~~~l~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLK  189 (412)
T 2vd5_A          140 MEYYVGGDLLTLLSKFG-----ERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIK  189 (412)
T ss_dssp             ECCCCSCBHHHHHHHHS-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EcCCCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccC
Confidence            99998 69999998642     2456666555444   89999999999888776

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=164.10  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=97.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|...+.||+|+||+||++. ..+++.||+|++...   ..+.+.+|+++|.++ +||||+++++++...+..++||||
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCL-EHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC-CCcCcccEEEEEecCCeeEEEEEe
Confidence            449999999999999999974 577999999988653   344789999999777 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.++++...     ..++......++.   .||.|||+.+++|||||
T Consensus        89 ~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlk  135 (310)
T 3s95_A           89 IKGGTLRGIIKSMD-----SQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLN  135 (310)
T ss_dssp             CTTCBHHHHHHHCC-----TTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             cCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC
Confidence            99 69999998632     2345555444443   89999999998777665

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.70  E-value=1.1e-16  Score=164.04  Aligned_cols=122  Identities=21%  Similarity=0.219  Sum_probs=100.2

Q ss_pred             ccccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          468 GRRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       468 ~~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +..+.+.|.+.+.||+|+||.||++. ..+++.||+|.+...      ..+.+.+|+.++.++ +||||+++++++...+
T Consensus         6 g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~hp~iv~~~~~~~~~~   84 (294)
T 4eqm_A            6 GKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQL-SHQNIVSMIDVDEEDD   84 (294)
T ss_dssp             SSCEETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTC-CBTTBCCEEEEEECSS
T ss_pred             hhHhhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcC-CCCCCceEEEeeeeCC
Confidence            34555679999999999999999974 678999999998642      234788999988777 9999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|+|||||+ |+|.+++....      .++...+..++.   .++.|||+.+++|||||
T Consensus        85 ~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlk  138 (294)
T 4eqm_A           85 CYYLVMEYIEGPTLSEYIESHG------PLSVDTAINFTNQILDGIKHAHDMRIVHRDIK  138 (294)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             eEEEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            9999999999 59999998643      345555544443   89999999999887776

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.70  E-value=1.2e-16  Score=162.88  Aligned_cols=117  Identities=21%  Similarity=0.181  Sum_probs=97.6

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|.+.+.||+|+||+||++...+|+.||+|++...     ..+.+.+|++++.++ +||||+++++++...+..++||||
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKEL-KHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC-CCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhc-CCCCEeeeeeEEccCCeEEEEEEe
Confidence            48999999999999999987677999999999753     235788999999777 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|+|.+++....     ..++...+..++   +.||.|||+.+|+|||||
T Consensus        82 ~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  127 (288)
T 1ob3_A           82 LDQDLKKLLDVCE-----GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK  127 (288)
T ss_dssp             CSEEHHHHHHTST-----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             cCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9999999998532     234444444443   389999999999887776

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.69  E-value=1.6e-16  Score=167.09  Aligned_cols=123  Identities=17%  Similarity=0.097  Sum_probs=101.1

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+++.||||++.+.      ..+.+.+|+.+|.++.+||||+++++++.+.+..|+||
T Consensus        10 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~   89 (345)
T 3a8x_A           10 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVI   89 (345)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEE
Confidence            49999999999999999985 567899999999863      22357889998888779999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...+      .+++..+..++.   .||.|||+.+|+|||||    |++.++
T Consensus        90 e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g  147 (345)
T 3a8x_A           90 EYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG  147 (345)
T ss_dssp             CCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             eCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCC
Confidence            9999 69999998643      355555555444   89999999999888776    444444

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.69  E-value=1e-16  Score=173.83  Aligned_cols=118  Identities=19%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+++.||||++.+.      ..+.+.+|+.+|..+ +||||++++++|.+.+.+|||
T Consensus        74 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~-~hp~Iv~l~~~~~~~~~~~lV  152 (437)
T 4aw2_A           74 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG-DSKWITTLHYAFQDDNNLYLV  152 (437)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHS-CTTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEeeCCEEEEE
Confidence            459999999999999999985 566889999999852      222488999888777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++...     ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       153 ~Ey~~gg~L~~~l~~~-----~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLK  202 (437)
T 4aw2_A          153 MDYYVGGDLLTLLSKF-----EDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIK  202 (437)
T ss_dssp             ECCCTTCBHHHHHHTT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EecCCCCcHHHHHHHc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccC
Confidence            99998 6999999853     23466666555544   89999999999887776

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=165.00  Aligned_cols=126  Identities=19%  Similarity=0.176  Sum_probs=103.0

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~  539 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+|+.||||.+...         ..+.+.+|+++|.++ +||||+++++++...
T Consensus         8 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~   86 (326)
T 2y0a_A            8 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI-QHPNVITLHEVYENK   86 (326)
T ss_dssp             CHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECS
T ss_pred             CcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhC-CCCCCCcEEEEEEeC
Confidence            344569999999999999999974 567999999999752         245799999999888 999999999999999


Q ss_pred             CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          540 DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       540 ~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +..++|||||+ |+|.+++...      ..+++..+..++.   .||.|||+.+++|||||    ++..++
T Consensus        87 ~~~~lv~e~~~~~~L~~~l~~~------~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~  151 (326)
T 2y0a_A           87 TDVILILELVAGGELFDFLAEK------ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRN  151 (326)
T ss_dssp             SEEEEEEECCCSCBHHHHHTTS------SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSS
T ss_pred             CEEEEEEEcCCCCCHHHHHHhc------CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCC
Confidence            99999999998 6999999643      2355555544444   89999999999888877    455544

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.69  E-value=2.1e-16  Score=163.02  Aligned_cols=120  Identities=16%  Similarity=0.137  Sum_probs=99.1

Q ss_pred             cCceEEEe-eeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          471 IGKLVVFN-KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       471 i~~~~~~~-~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.+.|.+. +.||+|+||.||++. ..+++.||||++...   ..+.+.+|+++|.++.+||||+++++++...+..|+|
T Consensus        10 ~~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv   89 (316)
T 2ac3_A           10 FEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV   89 (316)
T ss_dssp             TTTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence            34557774 789999999999985 678999999999763   3568899999998876899999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++....      .+++..+..++   +.||.|||+.+|+|||||
T Consensus        90 ~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk  138 (316)
T 2ac3_A           90 FEKMRGGSILSHIHKRR------HFNELEASVVVQDVASALDFLHNKGIAHRDLK  138 (316)
T ss_dssp             EECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence            99999 69999998643      34444444443   389999999999888777

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.69  E-value=1.2e-16  Score=164.09  Aligned_cols=116  Identities=21%  Similarity=0.223  Sum_probs=97.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|...+.||+|+||+||++. ..+++.||||++..   ...+.+.+|+.++.++ +||||+++++++...+..++||||
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN-KNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcC-CCCCCCeEeEEEEECCEEEEEEEC
Confidence            448899999999999999984 68899999999875   3455788999999887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.+++...       .+++..+..++   +.||.|||+.+|+|||||
T Consensus        99 ~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlk  143 (297)
T 3fxz_A           99 LAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLHSNQVIHRDIK  143 (297)
T ss_dssp             CTTCBHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCCCCHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence            98 6999999753       24444444444   389999999999877766

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.69  E-value=1.8e-16  Score=167.65  Aligned_cols=120  Identities=19%  Similarity=0.174  Sum_probs=99.3

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+|+.||+|++...     ..+.+.+|+++|.++ +||||+++++++.+.+..|
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~  104 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL-QHPNIVRLHDSIQEESFHY  104 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEeCCEEE
Confidence            344569999999999999999974 677999999999753     234788999999888 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+ |+|.+++...      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus       105 lv~e~~~gg~L~~~l~~~------~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlk  155 (362)
T 2bdw_A          105 LVFDLVTGGELFEDIVAR------EFYSEADASHCIQQILESIAYCHSNGIVHRNLK  155 (362)
T ss_dssp             EEECCCCSCBHHHHHTTC------SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS
T ss_pred             EEEecCCCCCHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCc
Confidence            9999999 5999998743      2355555544443   89999999999887776

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.69  E-value=1.4e-16  Score=164.95  Aligned_cols=120  Identities=17%  Similarity=0.236  Sum_probs=94.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-------  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-------  540 (613)
                      +.|+..+.||+|+||.||++. ..+|+.||||+++..    ..+.+.+|+++|.++ +||||++++++|...+       
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSC-CCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhC-CCCCEeeEEEEEEEeccchhhhh
Confidence            348999999999999999985 568999999999742    345789999999777 9999999999986643       


Q ss_pred             --------------------------------------------------EEEEEecCCC-ccHHHHHHHhcCCCccccC
Q 007199          541 --------------------------------------------------FVYLSLERCT-CSLNDLIYVLSGSFEEQLN  569 (613)
Q Consensus       541 --------------------------------------------------~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~  569 (613)
                                                                        ..++|||||+ |+|.+++....   .....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~---~~~~~  161 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC---SLEDR  161 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC---SGGGS
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc---Cccch
Confidence                                                              3899999999 59999998643   22333


Q ss_pred             CHH---HHHHHHHHHHHHHhcCCceeeccc
Q 007199          570 AKE---QDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       570 ~~~---~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ...   .+...++.||.|||+.+|+|||||
T Consensus       162 ~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  191 (332)
T 3qd2_B          162 EHGVCLHIFIQIAEAVEFLHSKGLMHRDLK  191 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCeeecCCC
Confidence            332   234444489999999998877765

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.69  E-value=2.9e-16  Score=160.24  Aligned_cols=138  Identities=15%  Similarity=0.087  Sum_probs=111.1

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      ..+.+.|.+.+.||+|+||.||++. ..+|+.||||++.. ...+.+.+|++++..+.+|+|++++++++......++||
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             CEETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             cccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            3455669999999999999999975 57899999999875 344578899999988878999999999999999999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCCcCcceeeec
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANGHPSAQLLKV  611 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg~PsniLlkl  611 (613)
                      ||+.|+|.+++....     ..++...+..++.   .||.|||+.+++|||||    ++..++...+..+||
T Consensus        86 e~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl  152 (298)
T 1csn_A           86 DLLGPSLEDLLDLCG-----RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYV  152 (298)
T ss_dssp             ECCCCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEE
T ss_pred             EecCCCHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEE
Confidence            999779999998642     2355555555544   89999999999988888    666666544444444

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.69  E-value=1.8e-16  Score=164.97  Aligned_cols=116  Identities=22%  Similarity=0.202  Sum_probs=97.5

Q ss_pred             EEEe---eeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFN---KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~---~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      |.+.   +.||+|+||.||++. ..+++.||||++.+.....+.+|++++..+.+||||+++++++.+.+..|||||||+
T Consensus        10 y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~   89 (325)
T 3kn6_A           10 YDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLN   89 (325)
T ss_dssp             EEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             cccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccC
Confidence            5553   789999999999974 567999999999987778899999999888559999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....      .+++..+..++.   .+|.|||+.+|+|||||
T Consensus        90 ~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk  133 (325)
T 3kn6_A           90 GGELFERIKKKK------HFSETEASYIMRKLVSAVSHMHDVGVVHRDLK  133 (325)
T ss_dssp             SCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             CCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Confidence             59999998642      355555544444   89999999998877766

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.69  E-value=2.2e-16  Score=166.06  Aligned_cols=118  Identities=23%  Similarity=0.272  Sum_probs=97.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...+.||+|+||+||++. ..+|+.||||++...      ..+.+.+|+++|.++ +||||+++++++...+..+||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCeEEEE
Confidence            458999999999999999985 578999999999752      224688999999888 999999999999999999999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||.|+|.+++...+     ..++...+..++   +.||.|||+.+|+|||||
T Consensus       133 ~e~~~g~l~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  181 (348)
T 1u5q_A          133 MEYCLGSASDLLEVHK-----KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK  181 (348)
T ss_dssp             EECCSEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS
T ss_pred             EecCCCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            9999999999987642     234444444443   389999999998777765

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.68  E-value=2.1e-16  Score=168.64  Aligned_cols=117  Identities=18%  Similarity=0.136  Sum_probs=98.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||+|.+.+      ...+.+.+|+++|..+ +||||++++++|.+.+..|+|
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l-~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL-EHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCCEEEEE
Confidence            459999999999999999974 67789999999975      2345788999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||. |+|.+++...      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        94 ~e~~~gg~L~~~l~~~------~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlk  142 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQN------VHFKEETVKLFICELVMALDYLQNQRIIHRDMK  142 (384)
T ss_dssp             ECCCTTEEHHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EecCCCCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCc
Confidence            99999 6999999853      2455555555444   89999999999888776

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.68  E-value=2e-16  Score=171.43  Aligned_cols=127  Identities=35%  Similarity=0.524  Sum_probs=101.1

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .+.+.|...++||+|+||+||.+...+|+.||||++.....+.+.+|+++|.++.+||||+++++++...+..|||||||
T Consensus        12 ~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~   91 (434)
T 2rio_A           12 SLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC   91 (434)
T ss_dssp             SCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             hhhheeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence            34456888899999999999887788899999999988777788999999988779999999999999999999999999


Q ss_pred             CccHHHHHHHhcCCCcc----ccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          550 TCSLNDLIYVLSGSFEE----QLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~GsL~~~L~~~~~~~~~----~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .|+|.+++.........    .......+...++.||.|||+.+|+|||||
T Consensus        92 ~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLk  142 (434)
T 2rio_A           92 NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLK  142 (434)
T ss_dssp             SEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            99999999864311000    011112345555599999999998777665

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.68  E-value=1.4e-16  Score=172.69  Aligned_cols=121  Identities=25%  Similarity=0.393  Sum_probs=100.8

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCccH
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCSL  553 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~GsL  553 (613)
                      .|...++||+|+||+||.....+|+.||||++.....+.+.+|+++|.++.+|||||++++++.+.+..|||||||+|+|
T Consensus        25 ~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~g~L  104 (432)
T 3p23_A           25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATL  104 (432)
T ss_dssp             EEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCSEEH
T ss_pred             EEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCCCCH
Confidence            48999999999999987777889999999999876666778999999888789999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          554 NDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       554 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++.....  .........+...++.||.|||+.+|+|||||
T Consensus       105 ~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK  145 (432)
T 3p23_A          105 QEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSLNIVHRDLK  145 (432)
T ss_dssp             HHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             HHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHCcCEeCCCC
Confidence            999986431  11222333455556699999999999887776

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.68  E-value=2.1e-16  Score=166.53  Aligned_cols=117  Identities=19%  Similarity=0.123  Sum_probs=98.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...+.||+|+||.||++. ..+|+.||||++.+.      ..+.+.+|+++|..+ +||||+++++++.+.+..|||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV-NFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEcCCEEEEE
Confidence            449999999999999999975 568999999999752      345788999988777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus       120 ~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk  168 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIG------RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLK  168 (350)
T ss_dssp             EECCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EcCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCcccccCc
Confidence            99999 69999998643      355555554444   89999999999888776

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.68  E-value=1.2e-16  Score=165.57  Aligned_cols=122  Identities=17%  Similarity=0.082  Sum_probs=88.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|+..+.||+|+||+||++. ..+|+.||||+++..    ..+.+.+|+++|.++ +||||+++++++...+..+|||||
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~   84 (317)
T 2pmi_A            6 QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL-KHENIVRLYDVIHTENKLTLVFEF   84 (317)
T ss_dssp             -------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTC-CBTTBCCEEEEECCTTEEEEEEEC
T ss_pred             ceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhc-CCCCcceEEEEEEECCeEEEEEEe
Confidence            48899999999999999984 677999999999753    335788999999777 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|+|.+++...........+++..+..++   +.||.|||+.+|+|||||
T Consensus        85 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlk  135 (317)
T 2pmi_A           85 MDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLK  135 (317)
T ss_dssp             CCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            999999999875322122345665555444   389999999999887776

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.68  E-value=3.4e-16  Score=157.47  Aligned_cols=118  Identities=23%  Similarity=0.232  Sum_probs=99.5

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...++..||||++...  ..+.+.+|++++.++ +||||+++++++...+..++|||||+
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (268)
T 3sxs_A            8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKL-SHPKLVKFYGVCSKEYPIYIVTEYIS   86 (268)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCceEEEEEccC
Confidence            449999999999999999987777888999999863  456899999999888 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....     ..+++..+..++.   .++.|||+.+++|||||
T Consensus        87 ~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik  131 (268)
T 3sxs_A           87 NGCLLNYLRSHG-----KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLA  131 (268)
T ss_dssp             TCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCS
T ss_pred             CCcHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcC
Confidence             69999998642     2355555544444   89999999999887766

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.68  E-value=2.6e-16  Score=164.89  Aligned_cols=118  Identities=19%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             CceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCC--CcceeEEEEEEeCCEEEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQH--PNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~H--pnIV~l~g~~~~~~~~~L  544 (613)
                      ++.|.+.+.||+|+||.||++...+++.||||++...     ..+.+.+|+++|.++ +|  |||+++++++...+..||
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL-QQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHH-TTTCTTBCCEEEEEECSSEEEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhh-hhcCCceEEEeeeEeeCCEEEE
Confidence            3569999999999999999987778999999999753     234788999999888 55  999999999999999999


Q ss_pred             EecCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          545 SLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++.|+|.+++....      .++...+..+   ++.||.|||+.+|+|||||
T Consensus        87 v~e~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~~iiHrDik  135 (343)
T 3dbq_A           87 VMECGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK  135 (343)
T ss_dssp             EECCCSEEHHHHHHHSC------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            99977689999998642      3444444333   3389999999998777665

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.68  E-value=2.8e-16  Score=166.06  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=99.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      +.|.+.+.||+|+||+||++. ..+++.||||++...  ..+.+.+|+.++.++ +||||+++++++...+..++|||||
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSL-RHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhC-CCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            459999999999999999974 568999999999863  346789999999887 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus        99 ~~~~L~~~l~~~~------~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlk  143 (361)
T 3uc3_A           99 SGGELYERICNAG------RFSEDEARFFFQQLLSGVSYCHSMQICHRDLK  143 (361)
T ss_dssp             CSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCC
T ss_pred             CCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            8 69999997643      345555544444   89999999999887776

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.68  E-value=3.7e-16  Score=158.88  Aligned_cols=118  Identities=16%  Similarity=0.067  Sum_probs=97.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCC-------cEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEG-------RSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g-------~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      +.|.+.+.||+|+||+||++. ..++       ..||+|.+...   ..+.+.+|++++.++ +||||+++++++...+.
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL-SHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTS-CCTTBCCEEEEECCTTC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEEeCCC
Confidence            459999999999999999974 4444       57999999753   345789999999888 99999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .++|||||+ |+|.+++....     ..+++.+...++.   .||.|||+.+++|||||
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk  140 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNK-----NCINILWKLEVAKQLAAAMHFLEENTLIHGNVC  140 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTG-----GGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcC
Confidence            999999999 69999998642     2355555554444   89999999999877766

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.68  E-value=3.8e-16  Score=157.29  Aligned_cols=118  Identities=24%  Similarity=0.249  Sum_probs=98.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...+++.||+|++...  ..+.+.+|++++.++ +||||+++++++.+.+..++||||++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCceEEEEEeCC
Confidence            449999999999999999987667889999999863  456899999999888 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++++...     ..++...+..++.   .++.|||+.+++|||||
T Consensus        89 ~~~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dik  133 (269)
T 4hcu_A           89 HGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA  133 (269)
T ss_dssp             TCBHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             CCcHHHHHHhcC-----cccCHHHHHHHHHHHHHHHHHHHhCCeecCCcc
Confidence             69999997532     2355555544443   89999999998777665

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.68  E-value=1.6e-16  Score=162.32  Aligned_cols=118  Identities=24%  Similarity=0.202  Sum_probs=95.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~  542 (613)
                      +.|++.+.||+|+||+||++.     ..+++.||||++....   .+.+.+|+++|.++ +||||+++++++...  ...
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECHHHHTSC
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCCCce
Confidence            559999999999999999975     3578899999998643   34788999999888 999999999998654  468


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++....     ..++...+..++   +.+|.|||+.+++|||||
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik  141 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHK-----ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA  141 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCG-----GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEEeCCCCCHHHHHHhcc-----cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            99999998 69999998642     235555444443   389999999998777665

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.68  E-value=2.1e-16  Score=165.49  Aligned_cols=116  Identities=19%  Similarity=0.215  Sum_probs=97.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||++. ..+++.||||++.+.      ..+.+.+|+++|..+ +||||+++++++...+..++||
T Consensus        10 ~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B           10 PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLL-RHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhC-CCCCCCeEEEEEEeCCEEEEEE
Confidence            39999999999999999985 678999999999752      234789999988777 9999999999999999999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+.|+|.+++....      .+++..+..++.   .|+.|||+.+|+|||||
T Consensus        89 E~~~g~l~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlk  135 (336)
T 3h4j_B           89 EYAGGELFDYIVEKK------RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLK  135 (336)
T ss_dssp             CCCCEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred             ECCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCc
Confidence            999999999998643      355555554444   89999999998877766

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.68  E-value=2.3e-16  Score=169.25  Aligned_cols=116  Identities=20%  Similarity=0.193  Sum_probs=93.1

Q ss_pred             EEE-eeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEEEecC
Q 007199          475 VVF-NKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYLSLER  548 (613)
Q Consensus       475 ~~~-~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~LV~E~  548 (613)
                      |.. .++||+|+||+||++. ..+|+.||||+++.  ...+.+|++++.+..+||||++++++|..    .+++||||||
T Consensus        63 y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~--~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~  140 (400)
T 1nxk_A           63 YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC  140 (400)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             ceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc--chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEe
Confidence            555 4799999999999974 67899999999974  35678899888777799999999999876    5679999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.+++...    ....+++..+..++.   .||.|||+.+|+|||||
T Consensus       141 ~~gg~L~~~l~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  188 (400)
T 1nxk_A          141 LDGGELFSRIQDR----GDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK  188 (400)
T ss_dssp             CCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             CCCCcHHHHHHHh----CCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcC
Confidence            99 5999999853    223455555555544   89999999999887776

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.68  E-value=2.2e-16  Score=165.78  Aligned_cols=119  Identities=23%  Similarity=0.202  Sum_probs=98.4

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      +.+.|.+.+.||+|+||+||++. ..+|+.||||++.+... ...+|+++|.++.+||||+++++++.+.+..|+|||||
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~   98 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELM   98 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCC
Confidence            44569999999999999999974 66899999999986432 34678888888878999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++...      ..+++..+..++.   .|+.|||+.+|+|||||
T Consensus        99 ~gg~L~~~i~~~------~~~~~~~~~~~~~qi~~al~~lH~~givHrDlk  143 (342)
T 2qr7_A           99 KGGELLDKILRQ------KFFSEREASAVLFTITKTVEYLHAQGVVHRDLK  143 (342)
T ss_dssp             CSCBHHHHHHTC------TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             CCCcHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCC
Confidence            9 6999999753      2455555555444   89999999999887776

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.67  E-value=2.6e-16  Score=165.93  Aligned_cols=124  Identities=19%  Similarity=0.122  Sum_probs=101.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+|+.||||++++.      ..+.+.+|.++|..+.+||||+++++++.+.+..|||
T Consensus        20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   99 (353)
T 2i0e_A           20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV   99 (353)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEE
Confidence            349999999999999999975 556889999999862      3456788998887766899999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus       100 ~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g  158 (353)
T 2i0e_A          100 MEYVNGGDLMYHIQQVG------RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG  158 (353)
T ss_dssp             EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             EeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCC
Confidence            99999 69999998643      355555555444   89999999999888877    455444

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=171.29  Aligned_cols=120  Identities=19%  Similarity=0.191  Sum_probs=97.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .+.+.|.+.+.||+|+||+||++ ...+|+.+|+|++....     .+.+.+|+++|..+ +||||+++++++.+.+..|
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~l~~~~~~~~~~~   86 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL-KHPNIVRLHDSISEEGHHY   86 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHC-CBTTBCCEEEEEECSSEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCcCCCeEEEEEEECCEEE
Confidence            44456999999999999999997 46789999999998632     34688999999888 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+ |+|.+++....      .+++..+..++.   .|+.|||+.+|+|||||
T Consensus        87 lv~E~~~gg~L~~~i~~~~------~~~e~~~~~i~~qil~aL~~lH~~givHrDlK  137 (444)
T 3soa_A           87 LIFDLVTGGELFEDIVARE------YYSEADASHCIQQILEAVLHCHQMGVVHRNLK  137 (444)
T ss_dssp             EEECCCBCCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS
T ss_pred             EEEEeCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9999999 69999998642      355555444443   89999999999887766

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.67  E-value=2.6e-16  Score=172.74  Aligned_cols=120  Identities=25%  Similarity=0.278  Sum_probs=99.3

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      .+.+.|...+.||+|+||.||++. ..+|+.||||++..      ...+.+.+|+++|.++ +||||+++++++...+..
T Consensus        23 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~  101 (484)
T 3nyv_A           23 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL-DHPNIMKLYEFFEDKGYF  101 (484)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEE
T ss_pred             cccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCCEE
Confidence            344669999999999999999974 56899999999864      2455799999999877 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|||||. |+|.+++....      .+++..+..++   +.||.|||+.+|+|||||
T Consensus       102 ~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk  153 (484)
T 3nyv_A          102 YLVGEVYTGGELFDEIISRK------RFSEVDAARIIRQVLSGITYMHKNKIVHRDLK  153 (484)
T ss_dssp             EEEECCCCSCBHHHHHHTCS------CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            99999999 69999997532      34454444444   389999999998877765

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.67  E-value=3.1e-16  Score=163.26  Aligned_cols=117  Identities=20%  Similarity=0.116  Sum_probs=93.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      +.|.+.+.||+|+||.||++..    .+|+.||+|++++.       ....+.+|+++|..+ +||||+++++++...+.
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV-KHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHC-CCTTBCCEEEEEECSSC
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhC-CCCCccceeEEEEcCCE
Confidence            4599999999999999999754    57899999999863       223578899999888 99999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      .|||||||+ |+|.+++....      .+.+..+..++   +.||.|||+.+|+|||||
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlk  148 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREG------IFMEDTACFYLAEISMALGHLHQKGIIYRDLK  148 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEEEEeCCCCCcHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCC
Confidence            999999999 69999998643      34454444443   389999999999887776

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.67  E-value=3.6e-16  Score=158.63  Aligned_cols=118  Identities=20%  Similarity=0.218  Sum_probs=96.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...++..||||++...  ..+.+.+|++++.++ +||||+++++++...+..++|||||+
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~  102 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL-SHEKLVQLYGVCTKQRPIFIITEYMA  102 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcC-CCCCEeeEEEEEecCCCeEEEEeccC
Confidence            459999999999999999987777889999999863  456899999999888 99999999999999999999999998


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++...     ...+++..+..++.   .++.|||+.+++|||||
T Consensus       103 ~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik  147 (283)
T 3gen_A          103 NGCLLNYLREM-----RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA  147 (283)
T ss_dssp             TCBHHHHHHCG-----GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCS
T ss_pred             CCcHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCc
Confidence             6999999853     23355555555444   89999999999877766

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.67  E-value=1.4e-16  Score=175.55  Aligned_cols=119  Identities=20%  Similarity=0.152  Sum_probs=98.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      ..|.+.+.||+|+||.||++. ..++..||||.++..  ..+.+.+|+++|.++ +||||++++++|...+..|||||||
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~lv~E~~  298 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFM  298 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhc-CCCCEeeEEEEEecCCcEEEEEEcc
Confidence            448999999999999999985 455889999999863  456899999999888 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.++|+...    ...++......++   +.||.|||+.+|+|||||
T Consensus       299 ~~g~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk  345 (495)
T 1opk_A          299 TYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLA  345 (495)
T ss_dssp             TTCBHHHHHHHSC----TTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             CCCCHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            9 79999998642    2335555544443   389999999998777666

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.67  E-value=3.4e-16  Score=161.67  Aligned_cols=126  Identities=23%  Similarity=0.201  Sum_probs=99.8

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .+.|+..+.||+|+||+||++. ..+|+.||||++...     .......|+..+.++.+||||++++++|...+..+||
T Consensus        56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv  135 (311)
T 3p1a_A           56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ  135 (311)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence            3569999999999999999985 558999999998652     2225566776777777999999999999999999999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||||.|+|.+++....     ..+++..+..++.   .||.|||+.+|+|||||       |+||||
T Consensus       136 ~e~~~~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-------p~NIll  190 (311)
T 3p1a_A          136 TELCGPSLQQHCEAWG-----ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVK-------PANIFL  190 (311)
T ss_dssp             EECCCCBHHHHHHHHC-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-------GGGEEE
T ss_pred             EeccCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-------HHHEEE
Confidence            9999999999998743     2355555444443   89999999998776654       555555

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.67  E-value=2.7e-16  Score=161.78  Aligned_cols=123  Identities=21%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--------hHHHHHHHHHHHhc--CCCCcceeEEEEEEe
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--------HDVALKEIQNLIAS--DQHPNIVRWYGVESD  538 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--------~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~~  538 (613)
                      .+.+.|++.+.||+|+||+||++. ..+++.||||++....        ...+.+|++++.++  ++||||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            344569999999999999999985 6789999999987421        34677888777665  259999999999987


Q ss_pred             CC-----EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          539 QD-----FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       539 ~~-----~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..     ..++||||+.|+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus        86 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk  147 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVDQDLRTYLDKAP----PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLK  147 (308)
T ss_dssp             CCSSSEEEEEEEEECCCCBHHHHHHTCC----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             cCCCCceeEEEEehhhhcCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            65     589999999999999998642    22356666555554   89999999998877765

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.67  E-value=2.5e-16  Score=167.08  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++..        .++..||||+++..    ..+.+.+|+++|.++.+||||++++++|...+
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  160 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  160 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence            5599999999999999999753        24557999999863    23478899999988768999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|+|||||+ |+|.++++..+..          .....+....+..++   +.||.|||+.+|+|||||
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  230 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLA  230 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            9999999999 6999999875311          112234554444443   389999999998877766

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.67  E-value=6.7e-16  Score=170.51  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=97.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----------------chHHHHHHHHHHHhcCCCCcceeE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----------------HHDVALKEIQNLIASDQHPNIVRW  532 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----------------~~~~~~~Ei~~L~~l~~HpnIV~l  532 (613)
                      .+.+.|.+.+.||+|+||+||++. ..+++.||||++...                ..+.+.+|+++|.++ +||||+++
T Consensus        33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~  111 (504)
T 3q5i_A           33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSL-DHPNIIKL  111 (504)
T ss_dssp             CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTC-CCTTBCCE
T ss_pred             CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhC-CCCCCCeE
Confidence            455679999999999999999984 567899999998752                235788999999888 99999999


Q ss_pred             EEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          533 YGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       533 ~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++.+.+..|||||||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus       112 ~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk  173 (504)
T 3q5i_A          112 FDVFEDKKYFYLVTEFYEGGELFEQIINRH------KFDECDAANIMKQILSGICYLHKHNIVHRDIK  173 (504)
T ss_dssp             EEEEECSSEEEEEEECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEEcCCEEEEEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCc
Confidence            999999999999999999 69999997643      345554444443   89999999999888776

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.67  E-value=4.7e-16  Score=166.19  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=95.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCC-CCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQ-HPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~-HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.|.+.+.||+|+||+||++...+++.||||++...     ..+.+.+|+++|.++.. ||||+++++++...+.+||||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            459999999999999999987666999999999753     23578999999988843 699999999999999999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++.|+|.+++....      .+....+.   +.++.||.|||+.+|+|||||
T Consensus       136 E~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlk  182 (390)
T 2zmd_A          136 ECGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK  182 (390)
T ss_dssp             ECCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCC
T ss_pred             ecCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence            966689999998642      33433333   333489999999998877765

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.67  E-value=6.6e-16  Score=162.47  Aligned_cols=126  Identities=19%  Similarity=0.098  Sum_probs=101.9

Q ss_pred             cccccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcC----CCCcceeEEEEEEeC
Q 007199          467 DGRRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASD----QHPNIVRWYGVESDQ  539 (613)
Q Consensus       467 ~~~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~----~HpnIV~l~g~~~~~  539 (613)
                      .+..+.+.|.+.+.||+|+||+||++. ..+++.||||+++..  ..+.+..|++++..+.    .||||+++++++...
T Consensus        29 ~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~  108 (360)
T 3llt_A           29 KGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYY  108 (360)
T ss_dssp             TTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEET
T ss_pred             cceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeEC
Confidence            445566779999999999999999974 578899999999852  3456788998888772    499999999999999


Q ss_pred             CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +..+||||||.|+|.+++....    ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       109 ~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  164 (360)
T 3llt_A          109 DHMCLIFEPLGPSLYEIITRNN----YNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLK  164 (360)
T ss_dssp             TEEEEEECCCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             CeeEEEEcCCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            9999999999889999998752    23455555555444   89999999998776665

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.67  E-value=1.5e-16  Score=173.43  Aligned_cols=120  Identities=21%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ----  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~----  539 (613)
                      .+.+.|.+.+.||+|+||+||++ ...+++.||||++...     ..+.+.+|+++|.++ +||||+++++++...    
T Consensus        50 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~  128 (458)
T 3rp9_A           50 QIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRL-NHDHVVKVLDIVIPKDVEK  128 (458)
T ss_dssp             CSCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSCTTT
T ss_pred             ccCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhC-CCCCCCceEEEEecCCccc
Confidence            45567999999999999999998 4678999999999752     234788999999888 999999999999543    


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       +.+|||||||.|+|.++++..      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus       129 ~~~~~lv~e~~~~~L~~~~~~~------~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlK  183 (458)
T 3rp9_A          129 FDELYVVLEIADSDFKKLFRTP------VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLK  183 (458)
T ss_dssp             CCCEEEEECCCSEEHHHHHHSS------CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred             CceEEEEEeccccchhhhcccC------CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCC
Confidence             579999999999999999743      3455555555444   89999999999887776

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.66  E-value=3.1e-16  Score=163.20  Aligned_cols=118  Identities=21%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-e---CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-Y---EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~---~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|.+.+.||+|+||.||++.. .   .+..||||+++..    ..+.+.+|+++|.++ +||||+++++++...+..||
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQF-DHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECGGGCCEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCCccEE
Confidence            4599999999999999999853 3   3456999999863    234788999999777 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.++++...     ..++...+..++.   .||.|||+.+|+|||||
T Consensus       128 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk  178 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHD-----GQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLA  178 (325)
T ss_dssp             EEECCTTCBHHHHHHTTT-----TCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EeeCCCCCcHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC
Confidence            999999 69999997532     2455555554444   89999999998877766

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.66  E-value=3.7e-16  Score=169.23  Aligned_cols=122  Identities=20%  Similarity=0.227  Sum_probs=100.3

Q ss_pred             ccccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--
Q 007199          468 GRRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--  539 (613)
Q Consensus       468 ~~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--  539 (613)
                      ...+.+.|.+.+.||+|+||.||++. ..+++.||||++...     ..+.+.+|+++|.++ +||||+++++++...  
T Consensus        21 ~~~i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~   99 (432)
T 3n9x_A           21 NVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL-KSDYIIRLYDLIIPDDL   99 (432)
T ss_dssp             GCCCCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSCT
T ss_pred             cceecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHc-CCCCcceEEEEEecCCC
Confidence            34556679999999999999999984 677899999999752     234788999999888 999999999999876  


Q ss_pred             ---CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 ---DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ---~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                         +..|||||||+|+|.++++..      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus       100 ~~~~~~~lv~e~~~~~L~~~~~~~------~~l~~~~~~~i~~qil~aL~~LH~~givHrDlk  156 (432)
T 3n9x_A          100 LKFDELYIVLEIADSDLKKLFKTP------IFLTEEHIKTILYNLLLGENFIHESGIIHRDLK  156 (432)
T ss_dssp             TTCCCEEEEEECCSEEHHHHHHSS------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             CcCCeEEEEEecCCcCHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence               579999999999999999743      3455555555444   89999999999877766

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.66  E-value=1.8e-16  Score=168.58  Aligned_cols=118  Identities=21%  Similarity=0.216  Sum_probs=97.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||.++...    .+.+.+|+++|.++ +||||+++++++...+..|||||
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQY-SHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTC-CCTTBCCEEEEECSSSSCEEEEE
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEecCCCcEEEEE
Confidence            458999999999999999985 4578999999998632    23678999999777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.++++...     ..++...+..++.   .||.|||+.+++|||||
T Consensus       193 ~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk  240 (377)
T 3cbl_A          193 LVQGGDFLTFLRTEG-----ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLA  240 (377)
T ss_dssp             CCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             cCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccC
Confidence            999 79999998642     2355555555443   89999999998877766

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.66  E-value=4.2e-16  Score=165.10  Aligned_cols=129  Identities=21%  Similarity=0.099  Sum_probs=100.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||+||++.      ..+++.||||+++..    ....+.+|+.+|.++ +||||+++++++...+..
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF-NHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSC
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhC-CCCCCCeEEEEEecCCCC
Confidence            559999999999999999975      245678999999752    233688999999888 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC-ccccCCHHHHHHHH---HHHHHHHhcCCceeeccc----eecCCC
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF-EEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~-~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++|||||+ |+|.++++..+... ....+....+..++   +.||.|||+.+|+|||||    |+..++
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~  218 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPG  218 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSS
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCC
Confidence            99999998 69999998764221 12335555444444   389999999999888877    555444

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.66  E-value=6.6e-16  Score=157.28  Aligned_cols=123  Identities=22%  Similarity=0.327  Sum_probs=100.9

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.+.|.+.+.||+|+||.||++. ..++..||+|++...    ..+.+.+|+++|.++ +||||+++++++...+..++|
T Consensus        20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv   98 (285)
T 3is5_A           20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL-DHPNIIKIFEVFEDYHNMYIV   98 (285)
T ss_dssp             HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhC-CCchHHhHHHheecCCeEEEE
Confidence            44569999999999999999974 577899999998863    346899999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++.....  ....+++..+..++.   .+|.|||+.+|+|||||
T Consensus        99 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dik  151 (285)
T 3is5_A           99 METCEGGELLERIVSAQA--RGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLK  151 (285)
T ss_dssp             ECCCSCCBHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             EEeCCCCcHHHHHHhhhh--cccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCC
Confidence            99999 699999875421  223456555555544   89999999998877766

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.66  E-value=7.9e-16  Score=159.47  Aligned_cols=126  Identities=17%  Similarity=0.154  Sum_probs=102.6

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---------chHHHHHHHHHHHhcCCCCcceeEEEEEEeC
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---------HHDVALKEIQNLIASDQHPNIVRWYGVESDQ  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~  539 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+|+.||||.+...         ..+.+.+|+++|.++ +||||+++++++...
T Consensus         9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~   87 (321)
T 2a2a_A            9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV-LHHNVITLHDVYENR   87 (321)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECS
T ss_pred             hhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhC-CCCCcceEEEEEecC
Confidence            344669999999999999999985 567999999999752         245799999999888 999999999999999


Q ss_pred             CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          540 DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       540 ~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      +..++|||||+ |+|.+++...      ..+++..+..++.   .||.|||+.+++|||||    ++..++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~------~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~  152 (321)
T 2a2a_A           88 TDVVLILELVSGGELFDFLAQK------ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN  152 (321)
T ss_dssp             SEEEEEECCCCSCBHHHHHHTC------SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTT
T ss_pred             CEEEEEEEcCCCCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCC
Confidence            99999999998 6999999753      2344444444443   89999999999888877    455444

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.66  E-value=3.9e-16  Score=161.28  Aligned_cols=119  Identities=21%  Similarity=0.213  Sum_probs=97.5

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      ..|.+.+.||+|+||+||++. .+|+.||||++...     ..+.+.+|+++|.++ +||||+++++++...+..++|||
T Consensus        37 ~~y~i~~~lG~G~~g~V~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e  114 (309)
T 3p86_A           37 CDLNIKEKIGAGSFGTVHRAE-WHGSDVAVKILMEQDFHAERVNEFLREVAIMKRL-RHPNIVLFMGAVTQPPNLSIVTE  114 (309)
T ss_dssp             GGEEEEEEEEECSSEEEEEEE-ETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSTTCCEEEEE
T ss_pred             hHceeeeEeecCCCeEEEEEE-ECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCceEEEEe
Confidence            459999999999999999974 47899999998753     234788999999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK  596 (613)
                      ||+ |+|.+++....   ....+++..+..++.   .||.|||+.+  ++|||||
T Consensus       115 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dik  166 (309)
T 3p86_A          115 YLSRGSLYRLLHKSG---AREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLK  166 (309)
T ss_dssp             CCTTCBHHHHHHSTT---HHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCC
T ss_pred             cCCCCcHHHHHhhcC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCC
Confidence            999 69999998542   222355555544443   8999999999  8877766

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.66  E-value=2.6e-16  Score=163.62  Aligned_cols=117  Identities=23%  Similarity=0.235  Sum_probs=96.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||+||++. ..+++.||||++...    ..+.+.+|+.++..+ +||||+++++++...+..|||||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML-NHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhC-CCCCCCeEEEEEecCCeEEEEEE
Confidence            459999999999999999984 568999999998753    234688999998877 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++...      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        86 ~~~~~~L~~~l~~~------~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlk  132 (323)
T 3tki_A           86 YCSGGELFDRIEPD------IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK  132 (323)
T ss_dssp             CCTTEEGGGGSBTT------TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             cCCCCcHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHHCCccccccc
Confidence            999 5999988643      2355555555544   89999999998877766

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.66  E-value=6.4e-16  Score=172.44  Aligned_cols=125  Identities=20%  Similarity=0.116  Sum_probs=102.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...++||+|+||.||++. ..+|+.||||++.+.      ....+.+|+++|.++ +||||+++++++.+.+.+|||
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l-~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV-NSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHc-CCCCEeeEEEEEeeCCEEEEE
Confidence            559999999999999999975 568999999999752      344688999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++....    ...+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus       263 mEy~~gg~L~~~l~~~~----~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g  323 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMG----QAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHG  323 (576)
T ss_dssp             ECCCCSCBHHHHHHSSS----SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS
T ss_pred             EEcCCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCC
Confidence            99999 69999998532    23366666655544   89999999999888776    444444

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.66  E-value=2.2e-16  Score=167.82  Aligned_cols=124  Identities=23%  Similarity=0.146  Sum_probs=93.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||+||++. ..+++.||||++++..      ...+.+|..++.+.++||||+++++++.+.+.+|||
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv  117 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV  117 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence            449999999999999999974 5678999999998632      235666766654555999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++...+      .+.+..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus       118 ~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g  176 (373)
T 2r5t_A          118 LDYINGGELFYHLQRER------CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG  176 (373)
T ss_dssp             EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS
T ss_pred             EeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCC
Confidence            99999 69999998643      345555544443   89999999999888877    455544

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=166.71  Aligned_cols=116  Identities=17%  Similarity=0.118  Sum_probs=89.1

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +...+.||+|+||.||++. ..+|+.||+|+++..   ..+.+.+|+++|.++ +||||+++++++...+..+||||||+
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~lv~E~~~  169 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL-DHANLIQLYDAFESKNDIVLVMEYVD  169 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhC-CCCCCCeEEEEEEECCEEEEEEeCCC
Confidence            3346789999999999974 578999999999874   345789999999777 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....     ..+++.....+   ++.||.|||+.+|+|||||
T Consensus       170 ~~~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  214 (373)
T 2x4f_A          170 GGELFDRIIDES-----YNLTELDTILFMKQICEGIRHMHQMYILHLDLK  214 (373)
T ss_dssp             TCEEHHHHHHTG-----GGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             CCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC
Confidence             69999997532     23444444433   3489999999998777665

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.66  E-value=1.3e-15  Score=154.48  Aligned_cols=119  Identities=19%  Similarity=0.154  Sum_probs=98.3

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.+.|.+.+.||+|+||.||++. ..+|+.||+|++...     ..+.+.+|++++.++ +||||+++++++...+..++
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   82 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL-QHPNIVRLHDSIQEESFHYL   82 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHc-CCCCcCeEEEEEEcCCEEEE
Confidence            44569999999999999999974 677999999999753     234688999999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||++ |+|.+++....      .+++..+..++   +.++.|||+.+++|||||
T Consensus        83 v~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik  132 (284)
T 3kk8_A           83 VFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCHSNGIVHRNLK  132 (284)
T ss_dssp             EECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             EEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCC
Confidence            999999 59999987643      34444444443   389999999999887776

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.66  E-value=2.7e-16  Score=167.31  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeC------------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQ------------  539 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~------------  539 (613)
                      +.|.+.+.||+|+||+||++. ..+|+.||||++... .....+|+++|..+ +||||+++++++...            
T Consensus         7 ~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~-~~~~~~E~~il~~l-~hpnIv~l~~~~~~~~~~~~~~~~~~~   84 (383)
T 3eb0_A            7 KKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD-PRYKNRELDIMKVL-DHVNIIKLVDYFYTTGDEEPKPPQPPD   84 (383)
T ss_dssp             TTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC-TTSCCHHHHHHTTC-CCTTBCCEEEEEEEC------------
T ss_pred             ceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC-cchHHHHHHHHHHc-CCCCccchhheeeecCccccccccccc
Confidence            459999999999999999984 678999999998753 22345799888777 999999999998543            


Q ss_pred             --------------------------CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCc
Q 007199          540 --------------------------DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVME  590 (613)
Q Consensus       540 --------------------------~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~i  590 (613)
                                                ...++|||||+|+|.+.+.....  ....+++..+..++.   .||.|||+.+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  162 (383)
T 3eb0_A           85 DHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIR--SGRSIPMNLISIYIYQLFRAVGFIHSLGI  162 (383)
T ss_dssp             -------------------------CCEEEEEECCCSEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence                                      34899999999999988875321  233456555555444   89999999998


Q ss_pred             eeeccc
Q 007199          591 NTKDIE  596 (613)
Q Consensus       591 iHrDlK  596 (613)
                      +|||||
T Consensus       163 ~H~Dik  168 (383)
T 3eb0_A          163 CHRDIK  168 (383)
T ss_dssp             ECSCCC
T ss_pred             ccCccC
Confidence            877765

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.66  E-value=8.9e-16  Score=167.13  Aligned_cols=118  Identities=24%  Similarity=0.241  Sum_probs=97.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-EEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-FVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++. ..|+.||||+++.. ..+.+.+|+++|.++ +||||+++++++...+ ..|||||||+
T Consensus       193 ~~~~~~~~lG~G~fg~V~~~~-~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~iv~e~~~  270 (450)
T 1k9a_A          193 KELKLLQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMA  270 (450)
T ss_dssp             GGEEEEEEEEECSSEEEEEEE-ETTEEEEEEEESSCTTSHHHHHHHHHHHTC-CCTTBCCEEEEEECTTSCEEEEEECCT
T ss_pred             HHeEEEeeecCcCCeeEEEEE-ecCCeEEEEEeCCchHHHHHHHHHHHHHhc-cCCCEEEEEEEEEcCCCceEEEEEecC
Confidence            458999999999999999964 45889999999863 456899999999888 9999999999988766 7999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++++...    ...++...+..++.   .||.|||+.+++|||||
T Consensus       271 ~g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk  316 (450)
T 1k9a_A          271 KGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA  316 (450)
T ss_dssp             TCBHHHHHHHHC----TTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             CCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence             69999998753    22345555444443   89999999998887776

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.66  E-value=3.5e-16  Score=170.50  Aligned_cols=118  Identities=18%  Similarity=0.157  Sum_probs=96.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||+||++...++..||||+++.  ...+.+.+|+++|.++ +||||+++++++. .+..|||||||+
T Consensus       188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~l~~~~~-~~~~~lv~e~~~  265 (454)
T 1qcf_A          188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTL-QHDKLVKLHAVVT-KEPIYIITEFMA  265 (454)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTC-CCTTBCCEEEEEC-SSSCEEEECCCT
T ss_pred             HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhC-CCCCEeeEEEEEe-CCccEEEEeecC
Confidence            45999999999999999998777788999999986  3456899999999777 9999999999986 667899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++|+...    ...++...+..++   +.||.|||+.+|+|||||
T Consensus       266 ~g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk  311 (454)
T 1qcf_A          266 KGSLLDFLKSDE----GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLR  311 (454)
T ss_dssp             TCBHHHHHHSHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCS
T ss_pred             CCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC
Confidence             79999998542    2234544444433   389999999999877766

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.66  E-value=1.1e-15  Score=154.56  Aligned_cols=119  Identities=22%  Similarity=0.303  Sum_probs=99.2

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.+.|.+.+.||+|+||.||++. ..++..||+|++..   ...+.+.+|++++.++ +||||+++++++...+..++||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL-DHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCeEEEEE
Confidence            44569999999999999999974 56788999999986   4556899999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++....      .+++..+..++.   .++.|||+.+++|||||
T Consensus        86 e~~~~~~L~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlk  133 (277)
T 3f3z_A           86 ELCTGGELFERVVHKR------VFRESDAARIMKDVLSAVAYCHKLNVAHRDLK  133 (277)
T ss_dssp             ECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             eccCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC
Confidence            9999 59999998643      344544444444   89999999998877766

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.65  E-value=6.7e-16  Score=169.66  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=99.8

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.+.|.+.+.||+|+||+||++. ..+++.||||++..     ...+.+.+|+++|.++ +||||+++++++...+..|+
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~l   98 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEILEDSSSFYI   98 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEE
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhC-CCCCcCeEEEEEEcCCEEEE
Confidence            44569999999999999999974 56899999999874     3456889999999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus        99 v~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk  148 (486)
T 3mwu_A           99 VGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMHKHNIVHRDLK  148 (486)
T ss_dssp             EECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCc
Confidence            999999 69999997643      345555544444   89999999999877766

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.65  E-value=7.7e-16  Score=161.90  Aligned_cols=120  Identities=21%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+++.||||++... ..+.+.+|+++|.++ +||||+++++++...+..++|||
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRL-SHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHC-CCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhC-CCCCCcceeeeEecCCeEEEEEE
Confidence            445669999999999999999985 557889999999864 445788999999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++...      ..+++..+..++.   .||.|||+.+++|||||
T Consensus       129 ~~~~~~L~~~l~~~------~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dik  175 (349)
T 2w4o_A          129 LVTGGELFDRIVEK------GYYSERDAADAVKQILEAVAYLHENGIVHRDLK  175 (349)
T ss_dssp             CCCSCBHHHHHTTC------SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             eCCCCCHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC
Confidence            999 6999999743      2355555544443   89999999999877765

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.65  E-value=1.9e-16  Score=168.15  Aligned_cols=118  Identities=22%  Similarity=0.163  Sum_probs=95.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|.+.+.||+|+||.||++..    .++..||||+++..    ..+.+.+|+++|.++ +||||+++++++...+..+|
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQF-DHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSSCEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEeeCCceEE
Confidence            3488899999999999999753    35778999999853    234789999999777 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.++++..     ...++...+..++.   .||.|||+.+|+|||||
T Consensus       124 v~e~~~~~sL~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  174 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKH-----DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLA  174 (373)
T ss_dssp             EEECCTTCBHHHHHHTT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEeCCCCCcHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC
Confidence            999998 6999999853     22355555544443   89999999999887776

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.65  E-value=9e-16  Score=164.18  Aligned_cols=122  Identities=20%  Similarity=0.210  Sum_probs=99.5

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FVY  543 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~~  543 (613)
                      ..+.|.+.+.||+|+||+||++. ..+|+.||||++..    ...+.+.+|+++|.++ +||||+++++++...+  ..+
T Consensus         7 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL-NHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC-CCTTBCCEEEEEECTTTCCEE
T ss_pred             CCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc-CCCCCCeEEEeeccCCCCeeE
Confidence            34569999999999999999984 56799999999985    3346788999999888 9999999999998765  789


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |+|.++++...   ....+++..+..++.   .||.|||+.+|+|||||
T Consensus        86 lv~e~~~~g~L~~~l~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  139 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIK  139 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGG---GTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             EEEecCCCCCHHHHHHhhh---cccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcC
Confidence            9999999 69999997643   222366666555554   89999999998776665

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.65  E-value=1.3e-15  Score=154.31  Aligned_cols=123  Identities=18%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++. ..+|+.||+|.+...         ..+.+.+|++++.++ +||||+++++++...+..
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~   83 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI-RHPNIITLHDIFENKTDV   83 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhC-CCCCeeehhheecCCCeE
Confidence            459999999999999999975 557999999998752         256799999999888 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ++||||++ ++|.+++....      .++...+..++.   .+|.|||+.+++|||||    ++..++
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~  145 (283)
T 3bhy_A           84 VLILELVSGGELFDFLAEKE------SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKN  145 (283)
T ss_dssp             EEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSS
T ss_pred             EEEEeecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCC
Confidence            99999998 69999997542      345555444444   89999999999888777    455444

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.65  E-value=1.3e-15  Score=155.72  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=94.1

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhc-CCCCcceeEEEEEEeC----CEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIAS-DQHPNIVRWYGVESDQ----DFVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l-~~HpnIV~l~g~~~~~----~~~~L  544 (613)
                      .+.+.|.+.+.||+|+||+||++. .+++.||||++.....+.+.+|.+++... ++||||+++++++...    ...++
T Consensus         5 ~~~~~y~~~~~lg~G~~g~V~~~~-~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l   83 (301)
T 3q4u_A            5 TVARDITLLECVGKGRYGEVWRGS-WQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL   83 (301)
T ss_dssp             CCGGGCEEEEEEEECSSEEEEEEE-ETTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cccCcEEEEEeeccCCCcEEEEEE-ECCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence            344569999999999999999974 47999999999887777788888777663 5999999999987653    46899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHh--------cCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLL--------PVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh--------~~~iiHrDlK  596 (613)
                      |||||+ |+|.++++..       .++...+.+++.   .||.|||        +.+|+|||||
T Consensus        84 v~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlk  140 (301)
T 3q4u_A           84 ITHYHEMGSLYDYLQLT-------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLK  140 (301)
T ss_dssp             EECCCTTCBHHHHHTTC-------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCC
T ss_pred             ehhhccCCCHHHHHhhc-------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCC
Confidence            999999 6999999532       345554444444   8999999        7777666655

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.65  E-value=6.3e-16  Score=164.19  Aligned_cols=131  Identities=18%  Similarity=0.061  Sum_probs=102.0

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcC-------CCCcceeEEEEEE-
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASD-------QHPNIVRWYGVES-  537 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~-------~HpnIV~l~g~~~-  537 (613)
                      ..+.+.|.+.+.||+|+||+||++. ..+++.||||++...  ..+.+.+|+++|..+.       .|+||+++++++. 
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~  112 (397)
T 1wak_A           33 DLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI  112 (397)
T ss_dssp             CEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred             hhcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence            3445669999999999999999984 677899999999864  3457889999988772       2888999999998 


Q ss_pred             ---eCCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-CceeeccceecCCCcCcceeee
Q 007199          538 ---DQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       538 ---~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlKllh~dg~PsniLlk  610 (613)
                         .....+||||||.|+|.+++...    ....+++..+..++.   .||.|||+. +|+||||       ||+||||.
T Consensus       113 ~~~~~~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDi-------kp~NIll~  181 (397)
T 1wak_A          113 SGVNGTHICMVFEVLGHHLLKWIIKS----NYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDI-------KPENILLS  181 (397)
T ss_dssp             EETTEEEEEEEECCCCCBHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCC-------SGGGEEEC
T ss_pred             cCCCCceEEEEEeccCccHHHHHHhc----ccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCC-------CHHHeeEe
Confidence               45589999999998888888754    223456655555544   899999998 8876655       57777764

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.65  E-value=7.6e-16  Score=159.75  Aligned_cols=115  Identities=15%  Similarity=0.078  Sum_probs=96.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD--QDFVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~~LV~E~~  549 (613)
                      +.|++.+.||+|+||+||++. ..+++.||||++.....+.+.+|+++|.++..||||+++++++..  ....++||||+
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence            459999999999999999984 678999999999988888999999999998459999999999998  66899999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      . ++|.++++.         ++...+   ...++.||.|||+.+++|||||
T Consensus       116 ~~~~l~~~~~~---------~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik  157 (330)
T 3nsz_A          116 NNTDFKQLYQT---------LTDYDIRFYMYEILKALDYCHSMGIMHRDVK  157 (330)
T ss_dssp             CCCCHHHHGGG---------CCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CchhHHHHHHh---------CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            9 699888753         233333   3344489999999998777665

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.65  E-value=6.7e-16  Score=158.90  Aligned_cols=121  Identities=22%  Similarity=0.233  Sum_probs=92.3

Q ss_pred             ccccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEE------
Q 007199          468 GRRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVES------  537 (613)
Q Consensus       468 ~~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~------  537 (613)
                      +..+.+.|...+.||+|+||.||++. ..+++.||||++....   .+.+.+|++++.++ +||||+++++++.      
T Consensus         6 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~   84 (320)
T 2i6l_A            6 GFDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL-DHDNIVKVFEILGPSGSQL   84 (320)
T ss_dssp             CEEETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECTTSCBC
T ss_pred             cCccCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhc-CCCCeeEEEEecccccccc
Confidence            44566779999999999999999985 5568999999988643   34788999999888 9999999999874      


Q ss_pred             --------eCCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          538 --------DQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 --------~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                              ..+..++||||++|+|.+++...       .++...+..++   +.||.|||+.+++|||||
T Consensus        85 ~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  147 (320)
T 2i6l_A           85 TDDVGSLTELNSVYIVQEYMETDLANVLEQG-------PLLEEHARLFMYQLLRGLKYIHSANVLHRDLK  147 (320)
T ss_dssp             CC----CCSCSEEEEEEECCSEEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS
T ss_pred             ccccccccccCceeEEeeccCCCHHHHhhcC-------CccHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence                    34689999999999999998632       34444444443   389999999998877765

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.65  E-value=1.2e-15  Score=155.99  Aligned_cols=118  Identities=20%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|...+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|++++.++ +||||+++++++...+..++|||
T Consensus         4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHc-CCCCeeeEEEEEecCCceEEEEE
Confidence            38999999999999999975 568999999998752     235788999999777 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+.|+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus        83 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  130 (299)
T 2r3i_A           83 FLHQDLKKFMDASA----LTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK  130 (299)
T ss_dssp             CCSEEHHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             cccCCHHHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC
Confidence            99999999998652    23355555544443   89999999999887776

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.65  E-value=1.8e-15  Score=157.15  Aligned_cols=115  Identities=23%  Similarity=0.250  Sum_probs=95.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .|...+.||+|+||.||++. ..+|+.||||++..   ...+.+.+|+.+|.++ +||||+++++++...+..++||||+
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~  124 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY-QHFNVVEMYKSYLVGEELWVLMEFL  124 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhC-CCCCcceEEEEEEECCEEEEEEecC
Confidence            47888899999999999985 45899999999975   3456789999998777 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++...       .++...+..++.   .||.|||+.+++|||||
T Consensus       125 ~~~~L~~~l~~~-------~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk  168 (321)
T 2c30_A          125 QGGALTDIVSQV-------RLNEEQIATVCEAVLQALAYLHAQGVIHRDIK  168 (321)
T ss_dssp             CSCBHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9 6999988632       345555544444   89999999998877765

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.65  E-value=3.2e-16  Score=167.01  Aligned_cols=119  Identities=23%  Similarity=0.221  Sum_probs=88.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD--FV  542 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~  542 (613)
                      +.+.|.+.+.||+|+||.||++. ..+|+.||||++...     ....+.+|+.+|.++..||||+++++++...+  .+
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            33559999999999999999984 678999999998642     23467899999988855999999999998655  79


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||||+|+|.++++..       .+.....   ...++.||.|||+.+|+|||||
T Consensus        87 ~lv~e~~~~~L~~~~~~~-------~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk  136 (388)
T 3oz6_A           87 YLVFDYMETDLHAVIRAN-------ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMK  136 (388)
T ss_dssp             EEEEECCSEEHHHHHHHT-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             EEEecccCcCHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC
Confidence            999999999999999753       2333333   3344489999999999887766

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.65  E-value=1.5e-15  Score=153.79  Aligned_cols=117  Identities=23%  Similarity=0.249  Sum_probs=96.9

Q ss_pred             ceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++ ...+++.||||++...      ..+.+.+|++++.++ +||||+++++++...+..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL-RHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcC-CCCCCcchhheEecCCEEEEE
Confidence            34999999999999999998 4677889999998752      344788999888777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....      .++...+..++   +.++.|||+.+++|||||
T Consensus        88 ~e~~~~~~l~~~l~~~~------~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlk  136 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKLS------KFDEQRTATYITELANALSYCHSKRVIHRDIK  136 (279)
T ss_dssp             ECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTTTCEECCCC
T ss_pred             EecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCEecccCC
Confidence            99999 69999998643      34444444443   389999999999888776

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=153.93  Aligned_cols=117  Identities=21%  Similarity=0.241  Sum_probs=97.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+|+.||||++...      ..+.+.+|++++.++ +||||+++++++...+..++||
T Consensus        12 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~   90 (278)
T 3cok_A           12 DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL-KHPSILELYNYFEDSNYVYLVL   90 (278)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTB-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhC-CCCCeEeEEEEEccCCeEEEEE
Confidence            39999999999999999985 578999999999752      235788999988777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.+++...     ...+++..+..++.   .++.|||+.+++|||||
T Consensus        91 e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  139 (278)
T 3cok_A           91 EMCHNGEMNRYLKNR-----VKPFSENEARHFMHQIITGMLYLHSHGILHRDLT  139 (278)
T ss_dssp             ECCTTEEHHHHHHTC-----SSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCC
T ss_pred             ecCCCCcHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            9999 6999999853     23455555554444   89999999998877766

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.64  E-value=7e-16  Score=158.56  Aligned_cols=124  Identities=22%  Similarity=0.195  Sum_probs=98.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      .+++.||||++...    ..+.+.+|+++|.++.+||||+++++++...+..
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~  102 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT  102 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence            4599999999999999999752      45678999999863    2357889999998877999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC------------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF------------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~------------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++.......            ....+++..+..++.   .||.|||+.+++|||||
T Consensus       103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  172 (313)
T 1t46_A          103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLA  172 (313)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCc
Confidence            99999999 59999998753210            011355555555544   89999999998777665

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.64  E-value=2.7e-15  Score=153.41  Aligned_cols=118  Identities=23%  Similarity=0.201  Sum_probs=94.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~  541 (613)
                      +.|+..+.||+|+||.||++.     ..+++.||||++...    ..+.+.+|+++|.++ +||||+++++++...  +.
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~   99 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL-YHENIVKYKGICTEDGGNG   99 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTC-CCTTBCCEEEEEEC---CC
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhC-CCCCeeeeeeEEecCCCce
Confidence            448999999999999999975     467889999999853    346789999999888 999999999999877  67


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .++||||++ |+|.+++....     ..++...+..++.   .+|.|||+.+++|||||
T Consensus       100 ~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik  153 (302)
T 4e5w_A          100 IKLIMEFLPSGSLKEYLPKNK-----NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLA  153 (302)
T ss_dssp             EEEEEECCTTCBHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEEEeCCCCcHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCc
Confidence            899999999 59999997643     2345555444443   89999999998776655

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.64  E-value=1.2e-15  Score=168.08  Aligned_cols=120  Identities=22%  Similarity=0.212  Sum_probs=95.6

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .+.+.|.+.+.||+|+||+||++. ..+++.||||++...     ..+.+.+|+++|..+ +||||++++++|...+..|
T Consensus        34 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~  112 (494)
T 3lij_A           34 HLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL-DHPNIMKLYDFFEDKRNYY  112 (494)
T ss_dssp             CHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEE
T ss_pred             chhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhC-CCCCCCeEEEEEEeCCEEE
Confidence            344569999999999999999974 568899999999852     345789999999777 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+ |+|.+++....      .+++..+..+   ++.||.|||+.+|+|||||
T Consensus       113 lv~e~~~~g~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk  163 (494)
T 3lij_A          113 LVMECYKGGELFDEIIHRM------KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLK  163 (494)
T ss_dssp             EEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEecCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCceeccCC
Confidence            9999999 69999987643      3444444433   3489999999998877766

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.64  E-value=9.5e-16  Score=163.70  Aligned_cols=120  Identities=18%  Similarity=0.106  Sum_probs=98.8

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.+.|.+.+.||+|+||.||++. ..+|+.||+|.+...   ....+.+|+++|..+ +||||+++++++...+..+|||
T Consensus        49 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~lv~  127 (387)
T 1kob_A           49 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL-HHPKLINLHDAFEDKYEMVLIL  127 (387)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC-CSTTBCCEEEEEECSSEEEEEE
T ss_pred             cccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhC-CCcCCCeEEEEEEeCCEEEEEE
Confidence            33569999999999999999984 568999999999864   334788999999777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++...     ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       128 E~~~gg~L~~~l~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlk  176 (387)
T 1kob_A          128 EFLSGGELFDRIAAE-----DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIK  176 (387)
T ss_dssp             ECCCCCBHHHHTTCT-----TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             EcCCCCcHHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccc
Confidence            9999 6999998642     22455555555444   89999999998877765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.64  E-value=1.3e-15  Score=171.09  Aligned_cols=181  Identities=11%  Similarity=0.052  Sum_probs=124.5

Q ss_pred             CCCCCCCCEEEEEec-CCcEEEEeC-CCCeeeEEeeCCCceeecc--------ccccC-CCCCe----EEEecCCCCeEE
Q 007199           42 PPLPPEPDVALVAAL-DGTIHLVDT-KLGKIRWSFGTGRPIYSSY--------QASFN-SNASE----FYLDVDEDWELY  106 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~-dG~l~ald~-~tG~~~W~~~~~~~i~s~~--------~~~~~-~~~~~----~~i~~~~DG~lY  106 (613)
                      ..+.+.+++||+++. +|.|||||+ .||+++|+++.+.+.....        ..+.. ...+.    +|+ ++.||.||
T Consensus        56 ~tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v-~t~dg~l~  134 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK-TQLDGNVA  134 (599)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE-ECTTSEEE
T ss_pred             eccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE-EcCCCEEE
Confidence            345568999999999 999999999 9999999998765421110        00111 01122    555 45599999


Q ss_pred             EEecCCCceeeecccHHH-----HhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCCCCCC-----
Q 007199          107 FHSKRFGKMKKLSSSAEE-----YIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFSASTP-----  170 (613)
Q Consensus       107 ~~~~~~G~l~~~~~~~~~-----~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~~~~~-----  170 (613)
                      ++|+.||++ .|.+.+..     .+.++|++. +|.||+|+.      ++.++++|++||+++|++.........     
T Consensus       135 AlDa~TG~~-~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~  212 (599)
T 1w6s_A          135 ALNAETGET-VWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD  212 (599)
T ss_dssp             EEETTTCCE-EEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             EEECCCCCE-EEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccc
Confidence            999999999 99988766     677899998 889999984      799999999999999999976532100     


Q ss_pred             -----CC----------cCCCCCccccCCCcccccccccccccccccEEEEEeeee----------------EEEEEeCC
Q 007199          171 -----GF----------QSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDY----------------VLQSTSQD  219 (613)
Q Consensus       171 -----~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~----------------~l~a~d~~  219 (613)
                           |.          +..+ .  ....+.. .-.....++  ..++||+|..+.                .|+|+|++
T Consensus       213 ~~~~~~~~g~~~~g~~tw~g~-~--~~~gg~~-~W~~~a~d~--~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~  286 (599)
T 1w6s_A          213 FNIKNPHYGQKGLGTGTWEGD-A--WKIGGGT-NWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD  286 (599)
T ss_dssp             TTTTCGGGCCTTHHHHTSSTT-G--GGGCCCC-CCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred             cccccccccccccccccCCCc-c--eecCCCc-cccceeEeC--CCCEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence                 00          0000 0  0000000 000001111  256999998763                89999999


Q ss_pred             CCceEEEEEece
Q 007199          220 SGEVLWNVAYAD  231 (613)
Q Consensus       220 ~G~~~Wn~t~~~  231 (613)
                      ||+++|.+....
T Consensus       287 TG~~~W~~q~~~  298 (599)
T 1w6s_A          287 TGEAKFGYQKTP  298 (599)
T ss_dssp             TCCEEEEEESST
T ss_pred             CCceeeEeecCC
Confidence            999999988763

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.64  E-value=4.3e-16  Score=159.52  Aligned_cols=115  Identities=24%  Similarity=0.257  Sum_probs=91.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----------------------------hHHHHHHHHHHHhc
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----------------------------HDVALKEIQNLIAS  523 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----------------------------~~~~~~Ei~~L~~l  523 (613)
                      .|.+.+.||+|+||.||++. ..+++.||||++....                             .+.+.+|+++|.++
T Consensus        14 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   93 (298)
T 2zv2_A           14 QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKL   93 (298)
T ss_dssp             TEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTC
T ss_pred             ceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhC
Confidence            49999999999999999984 6788999999987532                             24688999999888


Q ss_pred             CCCCcceeEEEEEEe--CCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          524 DQHPNIVRWYGVESD--QDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       524 ~~HpnIV~l~g~~~~--~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       +||||+++++++..  .+..++|||||+ |+|.+++.       ...+++..+..++.   .||.|||+.+++|||||
T Consensus        94 -~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-------~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk  164 (298)
T 2zv2_A           94 -DHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT-------LKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIK  164 (298)
T ss_dssp             -CCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC-------SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             -CCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence             99999999999987  568999999999 68876542       23455555555444   89999999999887776

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.64  E-value=3.9e-16  Score=162.17  Aligned_cols=117  Identities=16%  Similarity=0.135  Sum_probs=94.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchH----HHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHD----VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~----~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .|...+.||+|+||+||++. ..+++.||||++.....+    .+.+|+++|.++ +||||+++++++...+..++||||
T Consensus         3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL-KHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCC-CCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhc-CCCCCCeeeeEEeeCCEEEEEecc
Confidence            48999999999999999985 568899999999753322    455799888777 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|+|.+++....     ..+++..+..++   +.||.|||+.+|+|||||
T Consensus        82 ~~~~l~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dik  127 (324)
T 3mtl_A           82 LDKDLKQYLDDCG-----NIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLK  127 (324)
T ss_dssp             CSEEHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCC
T ss_pred             cccCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcC
Confidence            9999999998643     235555444443   389999999999887776

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.64  E-value=1.5e-15  Score=168.74  Aligned_cols=127  Identities=16%  Similarity=0.075  Sum_probs=103.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...++||+|+||+||++. ..+|+.||||++.+.      ..+.+.+|+++|.++ +||||+++++++...+.+|||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l-~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKV-HSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhc-CCCCEeeEEEEEeeCCEEEEE
Confidence            559999999999999999985 567999999999752      345788999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++.....  ....+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus       264 mE~~~gg~L~~~l~~~~~--~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g  326 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDE--DNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDG  326 (543)
T ss_dssp             ECCCTTCBHHHHHHTSST--TSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS
T ss_pred             EEeccCCCHHHHHHHhhc--ccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCC
Confidence            99999 699999986421  233566666655444   89999999999887776    444444

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.64  E-value=7.4e-16  Score=168.86  Aligned_cols=116  Identities=23%  Similarity=0.275  Sum_probs=97.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||.||++. ..+|+.||||++...      ..+.+.+|+++|..+ +||||+++++++...+..||||
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLF-RHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEE
Confidence            49999999999999999984 568999999999753      335788999998776 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++...      ..+++..+..++.   .|+.|||+.+|+|||||
T Consensus        96 E~~~gg~L~~~l~~~------~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLk  143 (476)
T 2y94_A           96 EYVSGGELFDYICKN------GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLK  143 (476)
T ss_dssp             ECCSSEEHHHHTTSS------SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCS
T ss_pred             eCCCCCcHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCCCCccccc
Confidence            9998 6999999642      3456665555554   89999999999887776

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.64  E-value=2.8e-16  Score=162.09  Aligned_cols=120  Identities=19%  Similarity=0.177  Sum_probs=96.0

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQD--  540 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--  540 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+++.||||+++...      ...+.+|++++.++ +||||+++++++...+  
T Consensus         9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~   87 (311)
T 3ork_A            9 HLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL-NHPAIVAVYDTGEAETPA   87 (311)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCC-CCTTBCCEEEEEEEEETT
T ss_pred             eecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcC-CCCCcceEEEeeeccCCC
Confidence            445669999999999999999985 6789999999998631      23678999888666 9999999999987654  


Q ss_pred             --EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 --FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 --~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        ..|+|||||+ |+|.++++...      .+++..+..++.   .+|.|||+.+++|||||
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk  143 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSHQNGIIHRDVK  143 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CcccEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCC
Confidence              3599999999 69999998643      345555444443   89999999999887766

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=155.52  Aligned_cols=117  Identities=21%  Similarity=0.217  Sum_probs=95.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.|...+.||+|+||+||++. ..+|+.||||++....     .+.+.+|++++.++ +||||+++++++...+..++||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL-KHPNLVNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhC-CCCCccchhheeecCCeEEEEE
Confidence            348999999999999999985 5679999999987532     34678999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ ++|.++++..      ..++...+..++.   .||.|||+.+++|||||
T Consensus        82 e~~~~~~l~~~~~~~------~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlk  129 (311)
T 4agu_A           82 EYCDHTVLHELDRYQ------RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVK  129 (311)
T ss_dssp             ECCSEEHHHHHHHTS------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EeCCCchHHHHHhhh------cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC
Confidence            9999 5888877643      2355555544443   89999999998877766

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.64  E-value=4.7e-16  Score=169.05  Aligned_cols=117  Identities=20%  Similarity=0.115  Sum_probs=90.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..+|+.||||++...      ....+.+|+++|..+ +||||++++++|...+.+|||
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS-RHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCC-SCTTSCCEEEEEEETTEEEEE
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhC-CCCeEeeEEEEEeeCCEEEEE
Confidence            459999999999999999974 678999999999852      224677888888666 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhc-CCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~-~~iiHrDlK  596 (613)
                      ||||+ |+|.+++...+      .+++..+..++   +.||.|||+ .+|+|||||
T Consensus       227 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlk  276 (446)
T 4ejn_A          227 MEYANGGELFFHLSRER------VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLK  276 (446)
T ss_dssp             ECCCSSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             EeeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCC
Confidence            99999 69999998643      35555554444   389999998 889887776

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.64  E-value=2.1e-15  Score=151.35  Aligned_cols=118  Identities=24%  Similarity=0.240  Sum_probs=98.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...+++.||+|++...  ..+.+.+|++++.++ +||||+++++++...+..++||||++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            349999999999999999987668889999999863  456899999999888 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++...+     ..++...+..++.   .++.|||+.+++|||||
T Consensus        87 ~~~L~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  131 (267)
T 3t9t_A           87 HGCLSDYLRTQR-----GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA  131 (267)
T ss_dssp             TCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             CCcHHHHHhhCc-----ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCc
Confidence             69999998642     2345555444443   89999999998777665

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.64  E-value=7e-16  Score=168.05  Aligned_cols=118  Identities=19%  Similarity=0.190  Sum_probs=96.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++....+..||||+++..  ..+.+.+|+++|.++ +||||+++++++.. +..+||||||+
T Consensus       184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~-~~~~iv~e~~~  261 (452)
T 1fmk_A          184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVSE-EPIYIVTEYMS  261 (452)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEEEECCCT
T ss_pred             hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhC-CCCCEeeEEEEEcC-CceEEEehhhc
Confidence            458999999999999999987666678999999863  456899999999888 99999999999876 67899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++++...    ...++...+..++.   .||.|||+.+++|||||
T Consensus       262 ~gsL~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlk  307 (452)
T 1fmk_A          262 KGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR  307 (452)
T ss_dssp             TCBHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             CCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence             69999997532    22355555554444   89999999998877765

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.64  E-value=1.8e-15  Score=154.46  Aligned_cols=120  Identities=21%  Similarity=0.160  Sum_probs=98.4

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      ...+.|...+.||+|+||.||++. ..+++.||+|.+...      ..+.+.+|++++..+ +||||+++++++...+..
T Consensus        12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~   90 (294)
T 2rku_A           12 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL-AHQHVVGFHGFFEDNDFV   90 (294)
T ss_dssp             TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEE
T ss_pred             CcccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhC-CCCCEeeeeeeeccCCEE
Confidence            344569999999999999999975 567889999998753      234788999999877 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ ++|.+++....      .++...+..++.   .++.|||+.+++|||||
T Consensus        91 ~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~  142 (294)
T 2rku_A           91 FVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLK  142 (294)
T ss_dssp             EEEEECCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             EEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            99999999 69999987542      344555444443   89999999998887766

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.64  E-value=1.3e-15  Score=174.18  Aligned_cols=182  Identities=14%  Similarity=0.154  Sum_probs=125.9

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecc-------ccccCCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSY-------QASFNSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~-------~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      ..+.+.+++||+++.+|.|||||+.||+++|+++.+.+.....       ........+.+|+. +.||.||++|+.||+
T Consensus        71 ~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~-~~dg~l~alD~~tG~  149 (677)
T 1kb0_A           71 ATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVG-AWDGRLIALDAATGK  149 (677)
T ss_dssp             CCCEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEE-CTTSEEEEEETTTCC
T ss_pred             eCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEE-cCCCEEEEEECCCCC
Confidence            3455689999999999999999999999999998765421110       00011111245554 559999999999999


Q ss_pred             eeeecccHH------HHhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCCCCCCCCcCC-------
Q 007199          115 MKKLSSSAE------EYIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSD-------  175 (613)
Q Consensus       115 l~~~~~~~~------~~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~-------  175 (613)
                      + .|.+.+.      ..+.++|++. ++.||+|+.      ++.++++|++||+++|++.......+.++...       
T Consensus       150 ~-~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~  227 (677)
T 1kb0_A          150 E-VWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR  227 (677)
T ss_dssp             E-EEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             E-EeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence            9 9999987      4677899998 889999986      79999999999999999987654322222110       


Q ss_pred             -----CCCccccCCCcccccccccccccccccEEEEEeeee-------------------EEEEEeCCCCceEEEEEec
Q 007199          176 -----ENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDY-------------------VLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       176 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~-------------------~l~a~d~~~G~~~Wn~t~~  230 (613)
                           .....+. .+.. .......++  ..++||++..+.                   .|+|+|++||+++|.+...
T Consensus       228 ~w~~~g~~~~~~-~g~~-~w~~~~~d~--~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~  302 (677)
T 1kb0_A          228 TWDPSGKWWEAG-GGGT-MWDSMTFDA--ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET  302 (677)
T ss_dssp             TSCGGGCHHHHC-EECC-CCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred             cccccCceeEeC-CCcc-cccceeEcC--CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence                 0000000 0000 000011111  256999998875                   5999999999999999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.64  E-value=1.1e-15  Score=175.30  Aligned_cols=180  Identities=16%  Similarity=0.122  Sum_probs=121.9

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecc--------ccccCCCCCeEEEecCCCCeEEEEecCCC
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSY--------QASFNSNASEFYLDVDEDWELYFHSKRFG  113 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~--------~~~~~~~~~~~~i~~~~DG~lY~~~~~~G  113 (613)
                      ..+.+.+++||+++.+|.|||||+.||+++|+++.+.+.....        ..+.. ..+.+|+ ++.||.||++|+.||
T Consensus        64 ~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v-~~~dg~l~AlDa~TG  141 (689)
T 1yiq_A           64 ATPIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYV-GVLDGRLEAIDAKTG  141 (689)
T ss_dssp             CCCEEETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEE-ECTTSEEEEEETTTC
T ss_pred             ecCEEECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEE-EccCCEEEEEECCCC
Confidence            3445689999999999999999999999999998754421100        00111 1124555 455999999999999


Q ss_pred             ceeeecccHH------HHhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCcc-
Q 007199          114 KMKKLSSSAE------EYIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHV-  180 (613)
Q Consensus       114 ~l~~~~~~~~------~~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~-  180 (613)
                      ++ .|.+...      ..+.++|++. +|.||+|+.      ++.++++|++||+++|++.+....   |....+.... 
T Consensus       142 ~~-~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~---p~~~~~~~~~~  216 (689)
T 1yiq_A          142 QR-AWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD---PKLPPEGKGME  216 (689)
T ss_dssp             CE-EEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC---TTSCCCSHHHH
T ss_pred             CE-eeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC---ccccccccccc
Confidence            99 9998875      3567899998 889999874      789999999999999999853211   1000000000 


Q ss_pred             ---ccCCC--------cccccccccccccccccEEEEEeeeeE-------------------EEEEeCCCCceEEEEEec
Q 007199          181 ---VPVDG--------YEELVESGVGNLKRIRQLVYIMRTDYV-------------------LQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       181 ---~~~~~--------~~~~~~~~~~~~~~~~~~v~igr~d~~-------------------l~a~d~~~G~~~Wn~t~~  230 (613)
                         -...+        -.....+...++  ..++||++..++.                   |+|+|++||+++|.+...
T Consensus       217 ~~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~  294 (689)
T 1yiq_A          217 IAAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT  294 (689)
T ss_dssp             HHHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred             ccccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence               00000        000000111111  2569999998874                   999999999999998864

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.64  E-value=9.9e-16  Score=155.65  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----------HDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      +.|.+.+.||+|+||+||++. ..+++.||||++....          .+.+.+|++++.++ +||||+++++++.+.. 
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~-   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL-NHPNIVKLYGLMHNPP-   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTC-CCTTBCCEEEEETTTT-
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhC-CCCCchhhheeecCCC-
Confidence            459999999999999999985 5789999999986421          15788999999877 9999999999987655 


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc----eecCCCcCcceeeec
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE----LWKANGHPSAQLLKV  611 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK----llh~dg~PsniLlkl  611 (613)
                       ++||||++ |+|.+++...     ...++......++.   .++.|||+.+  ++|||||    ++..++...++.+||
T Consensus        97 -~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl  170 (287)
T 4f0f_A           97 -RMVMEFVPCGDLYHRLLDK-----AHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKV  170 (287)
T ss_dssp             -EEEEECCTTCBHHHHHHCT-----TSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred             -eEEEEecCCCCHHHHHhcc-----cCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEe
Confidence             69999999 7999998753     23455555544444   8999999999  9888888    666666555555554

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.64  E-value=2e-15  Score=157.59  Aligned_cols=120  Identities=21%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      ...+.|...+.||+|+||.||++. ..+++.||+|++...      ..+.+.+|++++..+ +||||+++++++.+.+..
T Consensus        38 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~  116 (335)
T 2owb_A           38 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL-AHQHVVGFHGFFEDNDFV  116 (335)
T ss_dssp             TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEE
T ss_pred             ccCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEecCCeE
Confidence            334569999999999999999974 567889999998753      234788999998777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|||||+ ++|.+++....      .+.+..+..++.   .+|.|||+.+++|||||
T Consensus       117 ~lv~e~~~~~~L~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk  168 (335)
T 2owb_A          117 FVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLK  168 (335)
T ss_dssp             EEEECCCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             EEEEecCCCCCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHCCCEecCCC
Confidence            99999999 69999987642      344554444443   89999999998887776

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.64  E-value=8.4e-16  Score=161.38  Aligned_cols=89  Identities=24%  Similarity=0.346  Sum_probs=75.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-E
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-F  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~  541 (613)
                      +.|.+.+.||+|+||.||++.      ..+++.||||+++..    ..+.+.+|+++|.++.+||||+++++++...+ .
T Consensus        22 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~  101 (359)
T 3vhe_A           22 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP  101 (359)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred             cceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCc
Confidence            559999999999999999984      345678999999863    23468999999988878999999999998765 5


Q ss_pred             EEEEecCCC-ccHHHHHHHhc
Q 007199          542 VYLSLERCT-CSLNDLIYVLS  561 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~  561 (613)
                      .++|||||+ |+|.++++...
T Consensus       102 ~~iv~e~~~~g~L~~~l~~~~  122 (359)
T 3vhe_A          102 LMVIVEFCKFGNLSTYLRSKR  122 (359)
T ss_dssp             CEEEEECCTTEEHHHHHHTTT
T ss_pred             eEEEEEecCCCcHHHHHHhcc
Confidence            999999999 69999998753

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.64  E-value=3.1e-15  Score=153.38  Aligned_cols=116  Identities=20%  Similarity=0.196  Sum_probs=94.5

Q ss_pred             EEEe-eeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEEEecC
Q 007199          475 VVFN-KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYLSLER  548 (613)
Q Consensus       475 ~~~~-~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~LV~E~  548 (613)
                      |.+. +.||+|+||.||++. ..+++.||||+++.  ...+.+|++++.+..+||||+++++++..    ....+|||||
T Consensus        19 y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~   96 (299)
T 3m2w_A           19 YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC   96 (299)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECC
T ss_pred             hhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc--cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEee
Confidence            5554 889999999999974 57899999999975  45678899888777799999999999987    6789999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus        97 ~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk  144 (299)
T 3m2w_A           97 LDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK  144 (299)
T ss_dssp             CCSCBHHHHHHHCT----TCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             cCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99 59999998742    23455555555544   89999999998877765

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.63  E-value=1.7e-15  Score=153.74  Aligned_cols=117  Identities=21%  Similarity=0.190  Sum_probs=91.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|.+.+.||+|+||.||++..    ..+..||+|.+...    ..+.+.+|+.++.++ +||||+++++++ ..+..++
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~-~~~~~~l   92 (281)
T 1mp8_A           15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHPHIVKLIGVI-TENPVWI   92 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEE-CSSSCEE
T ss_pred             HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCccceEEEEE-ccCccEE
Confidence            4599999999999999999743    23567999998753    234788999999887 999999999998 4567899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||++ |+|.+++....     ..++...+..++   +.+|.|||+.+++|||||
T Consensus        93 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  143 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRK-----YSLDLASLILYAYQLSTALAYLESKRFVHRDIA  143 (281)
T ss_dssp             EEECCTTEEHHHHHHHTT-----TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEecCCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            999999 59999998642     234555544443   389999999998776655

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.63  E-value=2.5e-15  Score=153.44  Aligned_cols=119  Identities=18%  Similarity=0.187  Sum_probs=97.8

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------------hHHHHHHHHHHHhcCCCCcceeEEEEEEe
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------------HDVALKEIQNLIASDQHPNIVRWYGVESD  538 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~  538 (613)
                      .+.|...+.||+|+||.||++. ..+|+.||||++....            .+.+.+|++++.++.+||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            3559999999999999999974 5678999999997532            24678999999888569999999999999


Q ss_pred             CCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          539 QDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       539 ~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .+..++||||++ |+|.+++....      .++...+..++.   .+|.|||+.+++|||||
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  151 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEKV------TLSEKETRKIMRALLEVICALHKLNIVHRDLK  151 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             CCeEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            999999999999 69999998642      344444444443   89999999998877776

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.63  E-value=8.9e-16  Score=160.02  Aligned_cols=123  Identities=19%  Similarity=0.143  Sum_probs=97.4

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      .+++.||||+++...    .+.+.+|++++.++ +||||+++++++...+..
T Consensus        47 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  125 (343)
T 1luf_A           47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF-DNPNIVKLLGVCAVGKPM  125 (343)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSC
T ss_pred             HHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEccCCce
Confidence            5599999999999999999854      345889999998632    34788999999888 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC------------------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF------------------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~------------------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.++++......                  ....+++..+..++.   .+|.|||+.+++|||||
T Consensus       126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk  201 (343)
T 1luf_A          126 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA  201 (343)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            99999999 69999998743110                  013455555544444   89999999998777665

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.63  E-value=7.9e-16  Score=171.28  Aligned_cols=118  Identities=19%  Similarity=0.190  Sum_probs=96.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++....+..||||+++..  ..+.|.+|+++|.++ +||||+++++++.. +..|||||||.
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~-~~~~lv~e~~~  344 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVSE-EPIYIVTEYMS  344 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEEEECCCT
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhC-CCCCEeeEEEEEee-ccceEeeehhc
Confidence            458999999999999999987666678999999863  456899999999888 99999999999876 67899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.++|+...    ...+.+..+..++.   .||.|||+.+|+|||||
T Consensus       345 ~gsL~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk  390 (535)
T 2h8h_A          345 KGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR  390 (535)
T ss_dssp             TEEHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             CCcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence             69999997542    22355555554444   89999999998877766

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.63  E-value=9.9e-16  Score=161.41  Aligned_cols=118  Identities=19%  Similarity=0.070  Sum_probs=97.4

Q ss_pred             ceEEEeeeEeecCceEEEEEEe----eCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~----~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      +.|.+.+.||+|+||.||++..    .+++.||||+++..       ..+.+.+|+++|.++.+||||+++++++...+.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            4599999999999999999754    47899999998742       345677899999887679999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+||||||+ |+|.+++....      .+++..+..++   +.||.|||+.+|+|||||
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk  186 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRE------RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK  186 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEEEeecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            999999999 69999998643      34555544444   389999999999887776

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.63  E-value=8.6e-16  Score=162.82  Aligned_cols=116  Identities=23%  Similarity=0.195  Sum_probs=94.3

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-----
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-----  540 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-----  540 (613)
                      .+.|...+.||+|+||.||++. ..+++.||||++...     ..+.+.+|+.++..+ +||||+++++++...+     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-NHKNIIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSCCSTTTC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhc-CCCCccceEEeeccccccccc
Confidence            3559999999999999999974 677899999999752     234688999999887 9999999999998765     


Q ss_pred             -EEEEEecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          541 -FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 -~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                       ..|+|||||+|+|.+++..        .++...+   ...++.||.|||+.+|+|||||
T Consensus       103 ~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk  154 (371)
T 2xrw_A          103 QDVYIVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  154 (371)
T ss_dssp             CEEEEEEECCSEEHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             cceEEEEEcCCCCHHHHHhh--------ccCHHHHHHHHHHHHHHHHHHHHCCeecccCC
Confidence             7899999999999998863        1333333   3444489999999999887776

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.63  E-value=1.4e-15  Score=157.64  Aligned_cols=124  Identities=19%  Similarity=0.081  Sum_probs=99.0

Q ss_pred             ccccCceEEEeeeEeecCceEEEEEE--eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCC------cceeEEEEEE
Q 007199          468 GRRIGKLVVFNKEIAKGSNGTVVLEG--NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHP------NIVRWYGVES  537 (613)
Q Consensus       468 ~~~i~~~~~~~~~LG~G~fG~Vyk~~--~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~Hp------nIV~l~g~~~  537 (613)
                      +..+.+.|.+.+.||+|+||.||++.  ..+++.||||+++..  ..+.+.+|++++..+ +|+      +++++++++.
T Consensus         9 g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l-~~~~~~~~~~i~~~~~~~~   87 (339)
T 1z57_A            9 GDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHL-NTTDPNSTFRCVQMLEWFE   87 (339)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHH-HHHCTTCTTCBCCEEEEEE
T ss_pred             CCCccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHh-hhcCCCCceeeEeeecccc
Confidence            34556679999999999999999974  457889999999863  335788899888776 544      5999999999


Q ss_pred             eCCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          538 DQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 ~~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+..++|||||.|+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus        88 ~~~~~~lv~e~~~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk  145 (339)
T 1z57_A           88 HHGHICIVFELLGLSTYDFIKENG----FLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLK  145 (339)
T ss_dssp             ETTEEEEEEECCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cCCcEEEEEcCCCCCHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCC
Confidence            999999999999889999998642    22455555544443   89999999998877766

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=160.95  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++..        ..+..||||+++...    .+.+.+|++++.++.+||||+++++++...+
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  148 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG  148 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence            5699999999999999999752        223579999998632    2468899999988879999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..++|||||+ |+|.+++......          .....+++..+..++.   .||.|||+.+|+|||||
T Consensus       149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  218 (382)
T 3tt0_A          149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLA  218 (382)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCC
Confidence            9999999999 6999999875311          0123466666655554   89999999999877766

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.63  E-value=3.4e-16  Score=167.88  Aligned_cols=128  Identities=20%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             ccccCceEEE-eeeEeecCceEEEEEEe---eCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEe--CC
Q 007199          468 GRRIGKLVVF-NKEIAKGSNGTVVLEGN---YEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESD--QD  540 (613)
Q Consensus       468 ~~~i~~~~~~-~~~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~  540 (613)
                      ..++.+.|.+ .++||+|+||+||++..   .+++.||||++... ..+.+.+|+++|.++ +||||+++++++..  ..
T Consensus        15 ~~~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~   93 (405)
T 3rgf_A           15 RERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLREL-KHPNVISLQKVFLSHADR   93 (405)
T ss_dssp             CCCHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHC-CCTTBCCCCEEEEETTTT
T ss_pred             hhhhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhc-CCCCeeeEeeEEecCCCC
Confidence            3445556776 56899999999999853   36789999999864 345788999999888 99999999999965  66


Q ss_pred             EEEEEecCCCccHHHHHHHhcCC---CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGS---FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~---~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|||||||.|+|.+++...+..   .....+++..+..++.   .||.|||+.+|+|||||
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlk  155 (405)
T 3rgf_A           94 KVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLK  155 (405)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             eEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcC
Confidence            89999999999999998754210   0112355555555444   89999999998877665

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.63  E-value=3.4e-15  Score=154.59  Aligned_cols=122  Identities=21%  Similarity=0.230  Sum_probs=100.3

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEe------CCE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESD------QDF  541 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~------~~~  541 (613)
                      ..+.|.+.+.||+|+||.||++. ..+|+.||||++..  ...+.+.+|+.++.++.+||||+++++++..      .+.
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~  101 (326)
T 2x7f_A           22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ  101 (326)
T ss_dssp             CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence            34559999999999999999975 56899999999875  3456899999999888789999999999987      468


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .++|||||+ |+|.+++...    ....++...+..++.   .+|.|||+.+++|||||
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk  156 (326)
T 2x7f_A          102 LWLVMEFCGAGSVTDLIKNT----KGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIK  156 (326)
T ss_dssp             EEEEEECCTTEEHHHHHHHS----GGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             EEEEEEcCCCCcHHHHHHhc----ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc
Confidence            999999999 5999999864    223456655554443   89999999999887766

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.63  E-value=5.5e-16  Score=155.60  Aligned_cols=118  Identities=15%  Similarity=0.093  Sum_probs=95.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++.. +++.||||++...     ..+.+.+|++++.++ +||||+++++++...  +..++|
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~lv   87 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIF-SHPNVLPVLGACQSPPAPHPTLI   87 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCC-SCTTEECEEEEECTTTSSSCEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhc-CCCchhheEEEEccCCCCCeEee
Confidence            3489999999999999999753 5889999999853     234788999888777 999999999999887  788999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK  596 (613)
                      ||||+ |+|.++++..    ....+++..+..++.   .||.|||+.+  ++|||||
T Consensus        88 ~e~~~~~~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dik  140 (271)
T 3kmu_A           88 THWMPYGSLYNVLHEG----TNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALN  140 (271)
T ss_dssp             EECCTTCBHHHHHHSC----SSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCS
T ss_pred             ecccCCCcHHHHHhhc----ccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCc
Confidence            99999 6999999854    222456655555554   8999999988  8777766

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.63  E-value=2.4e-15  Score=153.86  Aligned_cols=121  Identities=18%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ...+.|++.+.||+|+||.||++. ..+++.||+|.+..   ...+.+.+|++++.++ +||||+++++++...+..++|
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   94 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC-DHPYIVKLLGAYYHDGKLWIM   94 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHC-CCTTBCCEEEEEECC-CEEEE
T ss_pred             CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcC-CCCCEeeeeeeeeeCCeEEEE
Confidence            344569999999999999999985 45789999999875   3456889999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++....     ..++...+..++.   .||.|||+.+++|||||
T Consensus        95 ~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  144 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLELD-----RGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLK  144 (302)
T ss_dssp             EECCTTEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             EEeCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            99999 59999987642     2355555554444   89999999998877766

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.63  E-value=2.7e-15  Score=153.98  Aligned_cols=119  Identities=21%  Similarity=0.221  Sum_probs=97.6

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.+.|.+.+.||+|+||.||++. ..+|+.||+|+++..   ..+.+.+|++++.++ +||||+++++++...+..++||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~   85 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI-KHENIVTLEDIYESTTHYYLVM   85 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhC-CCCCeeehhhhcccCCEEEEEE
Confidence            44569999999999999999974 568999999999863   334688999999888 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++....      .+++..+..++   +.+|.|||+.+++|||||
T Consensus        86 e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dik  133 (304)
T 2jam_A           86 QLVSGGELFDRILERG------VYTEKDASLVIQQVLSAVKYLHENGIVHRDLK  133 (304)
T ss_dssp             CCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred             EcCCCccHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            9999 69999997643      34454444444   389999999999887766

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.63  E-value=7.6e-16  Score=166.19  Aligned_cols=120  Identities=20%  Similarity=0.133  Sum_probs=93.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeC----C--EEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQ----D--FVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~----~--~~~LV  545 (613)
                      ..|...++||+|+||.||++. ..+|+.||||++... .....+|+++|.++ +||||++++++|...    +  .+++|
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~E~~il~~l-~hpniv~l~~~~~~~~~~~~~~~~~lv  131 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD-KRFKNRELQIMRKL-DHCNIVRLRYFFYSSGEKKDEVYLNLV  131 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-TTSCCHHHHHHHTC-CCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc-chhHHHHHHHHHHc-CCCCccceeeEEeccCCCCcceeEEee
Confidence            459999999999999999985 567999999998753 23345799999887 999999999998642    2  47799


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+|+|.+++.....  ....+++..+..++.   .||.|||+.+|+|||||
T Consensus       132 ~e~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk  183 (420)
T 1j1b_A          132 LDYVPETVYRVARHYSR--AKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIK  183 (420)
T ss_dssp             EECCCEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCS
T ss_pred             hhcccccHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            99999988887765321  234466655555444   89999999999877766

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=156.50  Aligned_cols=121  Identities=21%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~L  544 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||++...   ..+.+.+|++++..+ +||||+++++++..    ....++
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLF-NHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTC-CCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhc-CCCCeeeEEEEEEeccCCCceeEE
Confidence            559999999999999999975 578999999998753   345788999999777 99999999999873    347899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.+++.....  ....+++..+..++.   .||.|||+.+++|||||
T Consensus       108 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlk  161 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKD--KGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLK  161 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             EEEeCCCCcHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            999999 599999987432  233455555555444   89999999998877766

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.63  E-value=1.2e-15  Score=158.23  Aligned_cols=121  Identities=19%  Similarity=0.129  Sum_probs=93.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchH--HHHHHHHHHHhcCCCCcceeEEEEEEeCC----EEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD--VALKEIQNLIASDQHPNIVRWYGVESDQD----FVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~--~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----~~~LV~  546 (613)
                      +.|++.+.||+|+||+||++. ..++.||||++......  ...+|+.+|.++ +||||+++++++....    .+++||
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~-~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~~~~~lv~  101 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQDKQSWQNEYEVYSLPGM-KHENILQFIGAEKRGTSVDVDLWLIT  101 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEE-ETTEEEEEEEECGGGHHHHHHHHHHHTSTTC-CCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             hhchhhheecccCceEEEEEE-ECCCEEEEEEeecCchHHHHHHHHHHHHhcC-CCCCchhhcceeccCCCCCceEEEEE
Confidence            459999999999999999974 45899999999865443  556688777666 9999999999998754    479999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC----------CceeeccceecCCCcCcceee
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV----------MENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~----------~iiHrDlKllh~dg~PsniLl  609 (613)
                      |||+ |+|.++++..       .++...+..++.   .||.|||+.          +|+|||       ++|+|||+
T Consensus       102 e~~~~g~L~~~l~~~-------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~D-------lkp~Nill  164 (322)
T 3soc_A          102 AFHEKGSLSDFLKAN-------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRD-------IKSKNVLL  164 (322)
T ss_dssp             ECCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSC-------CSGGGEEE
T ss_pred             ecCCCCCHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCC-------CChHhEEE
Confidence            9999 6999999753       244444444443   899999998          665555       55666655

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.63  E-value=1.6e-15  Score=154.01  Aligned_cols=122  Identities=18%  Similarity=0.179  Sum_probs=93.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|+..+.||+|+||.||++. ..+|+.||||+++...    ...+..|...+.+..+||||+++++++...+..++|||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e   86 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICME   86 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEE
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEe
Confidence            459999999999999999975 5789999999997632    22344455454555699999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      ||+|+|.+++.....  ....+++..+..++.   .++.|||+. +++|||||
T Consensus        87 ~~~~~l~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlk  137 (290)
T 3fme_A           87 LMDTSLDKFYKQVID--KGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVK  137 (290)
T ss_dssp             CCSEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCS
T ss_pred             hhccchHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCC
Confidence            999999888875321  233456655555444   899999997 88877766

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.63  E-value=2.4e-15  Score=171.74  Aligned_cols=181  Identities=15%  Similarity=0.141  Sum_probs=122.4

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccc-------cccCCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQ-------ASFNSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~-------~~~~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      ..+.+.+++||+++.+|.|||||+.||+++|+++.+.+......       .......+.+|+ ++.||.||++|+.||+
T Consensus        60 ~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~dg~l~alD~~tG~  138 (668)
T 1kv9_A           60 ATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYV-GTLDGRLIALDAKTGK  138 (668)
T ss_dssp             CCCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEE-ECTTSEEEEEETTTCC
T ss_pred             cCCEEECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEE-EcCCCEEEEEECCCCC
Confidence            34456899999999999999999999999999987654321100       000011123555 4569999999999999


Q ss_pred             eeeecccHH-----HHhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCcc---
Q 007199          115 MKKLSSSAE-----EYIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHV---  180 (613)
Q Consensus       115 l~~~~~~~~-----~~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~---  180 (613)
                      + +|.+.+.     ..+.++|++. ++.||+|..      ++.++++|++||+++|++......   |....+....   
T Consensus       139 ~-~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~---p~~~~~~~~~~~~  213 (668)
T 1kv9_A          139 A-IWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD---PALPYEHPELREA  213 (668)
T ss_dssp             E-EEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC---TTSCCSSHHHHHH
T ss_pred             E-eeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC---CCccccccccccc
Confidence            9 9998874     3467799998 889999875      589999999999999999863211   1000000000   


Q ss_pred             -ccCCC--------cccccccccccccccccEEEEEeeeeE-------------------EEEEeCCCCceEEEEEec
Q 007199          181 -VPVDG--------YEELVESGVGNLKRIRQLVYIMRTDYV-------------------LQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       181 -~~~~~--------~~~~~~~~~~~~~~~~~~v~igr~d~~-------------------l~a~d~~~G~~~Wn~t~~  230 (613)
                       -...+        -.....+...++  ..++||++..+..                   |+|+|++||+++|.+...
T Consensus       214 ~~~~~g~~~w~~~~gg~~w~~~a~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~  289 (668)
T 1kv9_A          214 AKTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT  289 (668)
T ss_dssp             HTTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred             cccCCccceeeeCCCCccccceEEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence             00000        000000011111  2469999998874                   999999999999999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.62  E-value=1.8e-15  Score=153.04  Aligned_cols=118  Identities=21%  Similarity=0.179  Sum_probs=96.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++...+++.||||.+...  ..+.+.+|+++|.++ +||||+++++++. .+..++||||++
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~-~~~~~~v~e~~~   90 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL-QHQRLVRLYAVVT-QEPIYIITEYME   90 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhC-CCcCcceEEEEEc-CCCcEEEEecCC
Confidence            559999999999999999987777789999999863  456899999999888 9999999999886 456899999998


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++...    ....++...+..++.   .+|.|||+.+++|||||
T Consensus        91 ~~~L~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik  136 (279)
T 1qpc_A           91 NGSLVDFLKTP----SGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR  136 (279)
T ss_dssp             TCBHHHHTTSH----HHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             CCCHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence             6999999743    122455555544444   89999999998877766

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=155.84  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=97.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEe--------CC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESD--------QD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--------~~  540 (613)
                      ..|.+.+.||+|+||.||++. ..+++.||||++....   .+.+.+|+.++.++.+||||+++++++..        ..
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            459999999999999999985 5689999999986533   34788999999888559999999999953        34


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC--ceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~--iiHrDlK  596 (613)
                      ..+++||||.|+|.+++....   ....+++..+..++.   .+|.|||+.+  ++|||||
T Consensus       108 ~~~lv~e~~~g~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dik  165 (337)
T 3ll6_A          108 EFLLLTELCKGQLVEFLKKME---SRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLK  165 (337)
T ss_dssp             EEEEEEECCSEEHHHHHHHHH---TTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCC
T ss_pred             eEEEEEEecCCCHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCC
Confidence            689999999999999998643   233456655555544   8999999998  8877766

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.62  E-value=1.5e-15  Score=154.87  Aligned_cols=119  Identities=19%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEe----------
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESD----------  538 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----------  538 (613)
                      .+.|...+.||+|+||.||++. ..+++.||||++...  ..+.+.+|++++.++ +||||+++++++..          
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASL-NHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhcchhhhhcc
Confidence            3459999999999999999985 568999999999753  345788999998777 99999999999875          


Q ss_pred             ---CCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc
Q 007199          539 ---QDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       539 ---~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK  596 (613)
                         .+..|+|||||+ |+|.++++...     ...+...+..   .++.||.|||+.+++|||||
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlk  143 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSEN-----LNQQRDEYWRLFRQILEALSYIHSQGIIHRDLK  143 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSC-----GGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccc-----cccchHHHHHHHHHHHHHHHHHHhCCeecccCC
Confidence               357899999999 69999998632     2334444333   33489999999999877776

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.62  E-value=3.4e-15  Score=151.56  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=96.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||++...      ..+.+.+|++++.++ +||||+++++++...+..++|
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL-RHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcC-CCCCEeeEEEEEEcCCEEEEE
Confidence            349999999999999999975 567889999999752      245788999999887 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....      .+++..+..++.   .++.|||+.+++|||||
T Consensus        93 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  141 (284)
T 2vgo_A           93 LEFAPRGELYKELQKHG------RFDEQRSATFMEELADALHYCHERKVIHRDIK  141 (284)
T ss_dssp             ECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS
T ss_pred             EEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCceecCCC
Confidence            99999 59999998643      344544444443   89999999998877766

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.62  E-value=2.5e-16  Score=163.10  Aligned_cols=123  Identities=19%  Similarity=0.110  Sum_probs=99.4

Q ss_pred             cCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      ..+.|...+.||+|+||.||++...+++.||||++...   ..+.+.+|++++..+ +||||+++++++...+..++|||
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e  115 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC-RHPHLVSLIGFCDERNEMILIYK  115 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSC-CCTTBCCEEEECCCTTCCEEEEE
T ss_pred             HHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhC-CCCCEeeEEEEEcCCCeEEEEEE
Confidence            34568899999999999999987777999999998753   345789999988777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++.....  ....++......++.   .||.|||+.+++|||||
T Consensus       116 ~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlk  166 (321)
T 2qkw_B          116 YMENGNLKRHLYGSDL--PTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVK  166 (321)
T ss_dssp             CCTTCBTGGGSSSSCC--CSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             cCCCCcHHHHHhccCC--CccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCC
Confidence            999 699999865321  222355555554444   89999999998877766

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.62  E-value=2e-15  Score=169.25  Aligned_cols=182  Identities=14%  Similarity=0.133  Sum_probs=122.8

Q ss_pred             CCCCCCCCEEEEEec-CCcEEEEeC-CCCeeeEEeeCCCce--eec------cccccCCCCCeEEEecCCCCeEEEEecC
Q 007199           42 PPLPPEPDVALVAAL-DGTIHLVDT-KLGKIRWSFGTGRPI--YSS------YQASFNSNASEFYLDVDEDWELYFHSKR  111 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~-dG~l~ald~-~tG~~~W~~~~~~~i--~s~------~~~~~~~~~~~~~i~~~~DG~lY~~~~~  111 (613)
                      +.+.+.+++||+++. +|.|||||+ .||+++|+++.+.+.  ...      ...+.. ..+.+|+. +.||.||++|+.
T Consensus        56 ~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~-~~dg~l~alD~~  133 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKK-QANGHLLALDAK  133 (571)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEE-CTTSEEEEEETT
T ss_pred             cccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEE-eCCCEEEEEECC
Confidence            445568999999999 999999999 999999999876531  100      001111 12245554 559999999999


Q ss_pred             CCceeeecccHHH-----HhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCCC---CCCCCcCCCC
Q 007199          112 FGKMKKLSSSAEE-----YIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFSA---STPGFQSDEN  177 (613)
Q Consensus       112 ~G~l~~~~~~~~~-----~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~~---~~~~~~~~~~  177 (613)
                      +|++ +|.+.+..     .+.++|++. +|.||+|+.      ++.++++|++||+++|++......   ...|....+.
T Consensus       134 tG~~-~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~  211 (571)
T 2ad6_A          134 TGKI-NWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSAN  211 (571)
T ss_dssp             TCCE-EEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCE-EEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccc
Confidence            9999 99988765     577899998 889999987      789999999999999999876432   0011110000


Q ss_pred             Cc--------------cccCCCcccccccccccccccccEEEEEeee----------------eEEEEEeCCCCceEEEE
Q 007199          178 KH--------------VVPVDGYEELVESGVGNLKRIRQLVYIMRTD----------------YVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       178 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d----------------~~l~a~d~~~G~~~Wn~  227 (613)
                      ..              .....+.. .......++  ..+.||++..+                ..|+|+|++||+++|.+
T Consensus       212 ~~~G~~~~g~~~w~~~~~~~gg~~-~w~~~a~d~--~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~  288 (571)
T 2ad6_A          212 PHYGQFGLGTKTWEGDAWKIGGGT-NWGWYAYDP--KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY  288 (571)
T ss_dssp             GGGCCSSHHHHTSSTTGGGGCCCC-CCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccCcccceecCCCC-eeeeEEEcC--CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence            00              00000000 000001111  14689998753                26999999999999999


Q ss_pred             Eec
Q 007199          228 AYA  230 (613)
Q Consensus       228 t~~  230 (613)
                      ...
T Consensus       289 ~~~  291 (571)
T 2ad6_A          289 QKT  291 (571)
T ss_dssp             ESS
T ss_pred             cCC
Confidence            875

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.62  E-value=2.4e-15  Score=152.18  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=97.4

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe---------
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD---------  538 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~---------  538 (613)
                      ..+...|...+.||+|+||.||++. ..+++.||+|++.... +.+.+|++++.++ +||||+++++++..         
T Consensus         7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            7 KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-EKAEREVKALAKL-DHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-GGGHHHHHHHHHC-CCTTBCCEEEEEEEEEEC-----
T ss_pred             chhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-HHHHHHHHHHHhC-CCCCEEEEeeeEeccccCccccc
Confidence            3455669999999999999999985 4589999999998643 4678999999888 99999999999865         


Q ss_pred             -------CCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          539 -------QDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       539 -------~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                             ....++|||||+ |+|.+++....    ...++...+..++.   .+|.|||+.+++|||||
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk  149 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR----GEKLDKVLALELFEQITKGVDYIHSKKLINRDLK  149 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGG----GSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCC
Confidence                   346899999999 59999998642    23455555444443   89999999988776665

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.62  E-value=1.2e-15  Score=156.75  Aligned_cols=123  Identities=22%  Similarity=0.206  Sum_probs=97.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      .+++.||||++...    ..+.+.+|+++|.++ +||||+++++++...+..
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQV-NHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSSC
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC-CCCceeeEEEEEecCCce
Confidence            5599999999999999999742      34578999999863    234788999999777 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC------------------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF------------------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~------------------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++.......                  ....+++..+..++.   .||.|||+.+++|||||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dik  177 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLA  177 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccc
Confidence            99999999 69999998753200                  012245555544444   89999999998777665

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.62  E-value=3.1e-15  Score=153.99  Aligned_cols=119  Identities=20%  Similarity=0.317  Sum_probs=94.1

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .+.|.+.+.||+|+||.||++. ..+|+.||||.+.. ...+.+.+|++++.++ +||||+++++++...+..++||||+
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~  106 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQC-DSPHVVKYYGSYFKNTDLWIVMEYC  106 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTC-CCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhC-CCCCCccEEEEEEeCCEEEEEeecC
Confidence            3559999999999999999974 56799999999986 3456899999999887 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++....     ..++...+..++.   .++.|||+.+++|||||
T Consensus       107 ~~~~L~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~  152 (314)
T 3com_A          107 GAGSVSDIIRLRN-----KTLTEDEIATILQSTLKGLEYLHFMRKIHRDIK  152 (314)
T ss_dssp             TTEEHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcC
Confidence            9 59999997532     2345555544444   89999999998877766

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.62  E-value=3.2e-15  Score=150.84  Aligned_cols=117  Identities=24%  Similarity=0.273  Sum_probs=97.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..+|+.||||++...      ..+.+.+|++++..+ +||||+++++++...+..++|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLF-RHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcC-CCCCEeEEEEEEecCCeEEEE
Confidence            449999999999999999975 458999999999752      344788999999877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....      .++...+..++.   .++.|||+.+++|||||
T Consensus        90 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  138 (276)
T 2h6d_A           90 MEYVSGGELFDYICKHG------RVEEMEARRLFQQILSAVDYCHRHMVVHRDLK  138 (276)
T ss_dssp             EECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred             EeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence            99999 69999998643      344444444443   89999999998877766

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.62  E-value=4.5e-16  Score=161.36  Aligned_cols=122  Identities=16%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             CceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .+.|...+.||+|+||.||++...+|+.||||++....    ...+.+|++++..+ +||||+++++++...+..++|||
T Consensus        29 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e  107 (326)
T 3uim_A           29 SDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYP  107 (326)
T ss_dssp             TTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTC-CCTTBCCCCEEECCSSCCEEEEE
T ss_pred             hhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhc-cCCCccceEEEEecCCceEEEEE
Confidence            35588899999999999999877789999999998632    23789999988777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC---Cceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV---MENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~---~iiHrDlK  596 (613)
                      ||+ |+|.++++....  ....++...+..++.   .||.|||+.   +++|||||
T Consensus       108 ~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlk  161 (326)
T 3uim_A          108 YMANGSVASCLRERPE--SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK  161 (326)
T ss_dssp             CCTTCBHHHHHHCCST--TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCS
T ss_pred             eccCCCHHHHHHhccc--cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCc
Confidence            999 699999986431  223355555544444   899999999   88877766

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.62  E-value=1.9e-15  Score=153.55  Aligned_cols=119  Identities=21%  Similarity=0.158  Sum_probs=98.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      +.|.+.+.||+|+||.||++. ..++..||+|.+...  ..+.+.+|++++.++ +||||+++++++...+..++||||+
T Consensus        13 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~~   91 (288)
T 3kfa_A           13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFM   91 (288)
T ss_dssp             GGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             cceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCCEEEEEEcC
Confidence            559999999999999999975 566889999999864  345789999999888 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++....    ...++...+..++.   .++.|||+.+++|||||
T Consensus        92 ~~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dik  138 (288)
T 3kfa_A           92 TYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA  138 (288)
T ss_dssp             TTEEHHHHHHHCC----TTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCS
T ss_pred             CCCcHHHHHHhcc----cCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCC
Confidence            9 69999998642    23455555544443   89999999998776655

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.62  E-value=3.1e-15  Score=155.88  Aligned_cols=124  Identities=18%  Similarity=0.192  Sum_probs=95.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++..        .+++.||||++....    .+.+.+|++++.++.+||||+++++++...+
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  114 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  114 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCC
Confidence            5599999999999999999753        467789999998632    3468899999988778999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..++|||||+ |+|.+++...+..          .....++...+..++.   .||.|||+.+++|||||
T Consensus       115 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  184 (334)
T 2pvf_A          115 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLA  184 (334)
T ss_dssp             CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCc
Confidence            9999999999 6999999865311          0112355554444443   89999999998777766

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.62  E-value=4.4e-15  Score=160.69  Aligned_cols=124  Identities=20%  Similarity=0.115  Sum_probs=100.5

Q ss_pred             cccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc--hHHHHHHHHHHHhc-----CCCCcceeEEEEEEeCC
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH--HDVALKEIQNLIAS-----DQHPNIVRWYGVESDQD  540 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~--~~~~~~Ei~~L~~l-----~~HpnIV~l~g~~~~~~  540 (613)
                      ..+...|.+.+.||+|+||+||++ ...+++.||||+++...  .+.+.+|++++..+     ..|+||+++++++...+
T Consensus        93 ~~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  172 (429)
T 3kvw_A           93 DHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN  172 (429)
T ss_dssp             CEETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred             CcccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence            345566999999999999999998 46678999999998643  34677888887765     36789999999999999


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ..++|||||.|+|.+++....    ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       173 ~~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK  227 (429)
T 3kvw_A          173 HICMTFELLSMNLYELIKKNK----FQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLK  227 (429)
T ss_dssp             EEEEEECCCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCS
T ss_pred             eEEEEEeccCCCHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            999999999999999998752    23356555555444   89999999998887776

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.62  E-value=2.6e-15  Score=156.77  Aligned_cols=124  Identities=20%  Similarity=0.183  Sum_probs=96.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++..      .+++.||||++...    ..+.+.+|+++|.++.+||||+++++++...+..
T Consensus        45 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  124 (344)
T 1rjb_A           45 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  124 (344)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCcc
Confidence            5599999999999999999753      34568999999752    3457899999998887899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCc-----------------cccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFE-----------------EQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~-----------------~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++...+....                 ...++...+..++.   .||.|||+.+|+|||||
T Consensus       125 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  199 (344)
T 1rjb_A          125 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA  199 (344)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS
T ss_pred             EEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99999999 699999986532110                 12245544444443   89999999998877765

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.62  E-value=2.5e-15  Score=155.49  Aligned_cols=123  Identities=16%  Similarity=0.097  Sum_probs=89.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCc---EEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE-
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGR---SVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV-  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~---~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~-  542 (613)
                      +.|.+.+.||+|+||.||++. ..++.   .||||+++..     ..+.+.+|++++.++ +||||+++++++...+.. 
T Consensus        23 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~  101 (323)
T 3qup_A           23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF-DHPHVAKLVGVSLRSRAKG  101 (323)
T ss_dssp             --CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTC-CCTTBCCCCEEEECC----
T ss_pred             hHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHC-CCCceehhhceeecccccc
Confidence            559999999999999999985 33333   7999998752     345789999999877 999999999999887665 


Q ss_pred             -----EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 -----YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 -----~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                           ++|||||+ |+|.+++...........+++..+.+++.   .||.|||+.+++|||||
T Consensus       102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dik  164 (323)
T 3qup_A          102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLA  164 (323)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Confidence                 99999999 69999998654221222456665555554   89999999999877766

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.62  E-value=2e-15  Score=158.99  Aligned_cols=121  Identities=22%  Similarity=0.200  Sum_probs=97.4

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc--------------hHHHHHHHHHHHhcCCCCcceeEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--------------HDVALKEIQNLIASDQHPNIVRWYGV  535 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~--------------~~~~~~Ei~~L~~l~~HpnIV~l~g~  535 (613)
                      .+.+.|.+.+.||+|+||.||++...+|+.||||++....              .+.+.+|+++|.++ +||||++++++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~   97 (362)
T 3pg1_A           19 AMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHF-HHPNILGLRDI   97 (362)
T ss_dssp             HTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHC-CCTTBCCCSEE
T ss_pred             HhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhC-CCcCccceeee
Confidence            3446699999999999999999876779999999986421              25789999999888 99999999999


Q ss_pred             EEeC-----CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          536 ESDQ-----DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       536 ~~~~-----~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +...     ...|+|||||+|+|.+++...     ...++...+..++.   .||.|||+.+++|||||
T Consensus        98 ~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk  161 (362)
T 3pg1_A           98 FVHFEEPAMHKLYLVTELMRTDLAQVIHDQ-----RIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLH  161 (362)
T ss_dssp             EEECCTTTCCEEEEEEECCSEEHHHHHHCT-----TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEeccCCCcceEEEEEccCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCC
Confidence            8653     368999999999999999853     23455555544443   89999999998877765

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.62  E-value=9.4e-16  Score=167.67  Aligned_cols=117  Identities=24%  Similarity=0.222  Sum_probs=94.2

Q ss_pred             cCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-----  539 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----  539 (613)
                      +.+.|+..+.||+|+||+||++ ...+|+.||||++...     ..+.+.+|+.+|..+ +||||+++++++...     
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~~~  138 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-NHKNIISLLNVFTPQKTLEE  138 (464)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCCSTTT
T ss_pred             ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhC-CCCCCCcEEEEEccCCcccc
Confidence            3456999999999999999998 4678999999999752     234788999999887 999999999999754     


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcCCceeeccc
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                       ..+|||||||+|+|.+.+..        .+....+   ...++.||.|||+.+|+|||||
T Consensus       139 ~~~~~lv~E~~~~~l~~~~~~--------~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlk  191 (464)
T 3ttj_A          139 FQDVYLVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  191 (464)
T ss_dssp             CCEEEEEEECCSEEHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CCeEEEEEeCCCCCHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence             46899999999888887753        1344443   3344489999999999888776

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.62  E-value=2.4e-15  Score=157.72  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=96.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-------  539 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-------  539 (613)
                      ..|.+.+.||+|+||.||++. ..+|+.||||++...     ....+.+|+++|..+ +||||+++++++...       
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL-KHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHC-CCTTBCCEEEEEEEC-------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhc-cCCCcccHhheeeccccccccC
Confidence            349999999999999999985 578999999998652     234788999999888 999999999999873       


Q ss_pred             -CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 -DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 -~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       +..+||||||+|+|.+.+....     ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        96 ~~~~~lv~e~~~~~l~~~l~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk  151 (351)
T 3mi9_A           96 KGSIYLVFDFCEHDLAGLLSNVL-----VKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMK  151 (351)
T ss_dssp             -CEEEEEEECCSEEHHHHHHCTT-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CceEEEEEeccCCCHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC
Confidence             4689999999999998887532     3355555555544   89999999999887776

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.61  E-value=2.2e-15  Score=158.52  Aligned_cols=119  Identities=17%  Similarity=0.148  Sum_probs=97.3

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      ..+.|...+.||+|+||.||++. ..+++.||+|++...    ..+.+.+|+++|.++ +||||+++++++...+..+||
T Consensus        31 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv  109 (360)
T 3eqc_A           31 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISIC  109 (360)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGC-CCTTBCCEEEEEEETTEEEEE
T ss_pred             ccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHC-CCCCEEEEeEEEEECCEEEEE
Confidence            34569999999999999999974 567899999999863    234788999988777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      ||||+ |+|.++++...      .++...+..++.   .++.|||.. +++|||||
T Consensus       110 ~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlk  159 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK  159 (360)
T ss_dssp             ECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCS
T ss_pred             EECCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCcc
Confidence            99999 59999998643      344444444443   899999985 78777665

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.61  E-value=2e-15  Score=156.04  Aligned_cols=124  Identities=17%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             CceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      .+.|.+.+.||+|+||.||++..      .+++.||||.+...    ....+.+|++++.++ +||||+++++++...+.
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~  102 (322)
T 1p4o_A           24 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF-NCHHVVRLLGVVSQGQP  102 (322)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC-CCTTBCCEEEEECSSSS
T ss_pred             hhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhc-CCCCEeeeEEEEccCCc
Confidence            35699999999999999999742      35788999999863    233688999998777 99999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCC----CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGS----FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~----~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .++|||||+ |+|.++++..+..    .....+.+..+..++.   .||.|||+.+++|||||
T Consensus       103 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik  165 (322)
T 1p4o_A          103 TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLA  165 (322)
T ss_dssp             CEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCS
T ss_pred             cEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCc
Confidence            999999999 6999999864310    0012345555544443   89999999999887776

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.61  E-value=3.9e-15  Score=153.06  Aligned_cols=121  Identities=19%  Similarity=0.245  Sum_probs=96.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..+|+.||||++...      ..+.+.+|++++.++ +||||+++++++...+..++|
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL-NHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEcCCcEEEE
Confidence            349999999999999999975 578999999999752      234788999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++.....  ....++...+..++.   .+|.|||+.+++|||||
T Consensus       111 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~  163 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKK--QKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIK  163 (310)
T ss_dssp             EECCCSCBHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EecCCCCCHHHHHHHhcc--cccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCc
Confidence            99999 599999986421  223455555544444   89999999999887776

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.61  E-value=8.8e-16  Score=160.55  Aligned_cols=119  Identities=19%  Similarity=0.123  Sum_probs=98.2

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----------chHHHHHHHHHHHhcCCCCcceeEEEEEEe
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----------HHDVALKEIQNLIASDQHPNIVRWYGVESD  538 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~  538 (613)
                      +.+.|.+.+.||+|+||.||++. ..+++.||||++...           ..+.+.+|+++|.++ +||||+++++++..
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~Iv~~~~~~~~  100 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRV-EHANIIKVLDIFEN  100 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTC-CCTTBCCEEEEEEC
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhC-CCCCEeeEEEEEee
Confidence            33559999999999999999984 678999999999863           223677899999777 99999999999999


Q ss_pred             CCEEEEEecCCC-c-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          539 QDFVYLSLERCT-C-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       539 ~~~~~LV~E~~~-G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .+..++||||+. | +|.+++...      ..+++..+..++.   .+|.|||+.+|+|||||
T Consensus       101 ~~~~~lv~e~~~~g~~l~~~~~~~------~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk  157 (335)
T 3dls_A          101 QGFFQLVMEKHGSGLDLFAFIDRH------PRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIK  157 (335)
T ss_dssp             SSEEEEEEECCTTSCBHHHHHHTC------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             CCEEEEEEEeCCCCccHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccC
Confidence            999999999997 7 999999853      2355555554444   89999999998877766

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.61  E-value=3.6e-15  Score=153.62  Aligned_cols=123  Identities=17%  Similarity=0.112  Sum_probs=93.2

Q ss_pred             ceEEEeeeEeecCceEEEEEEee----CCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC---
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNY----EGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD---  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~----~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~---  540 (613)
                      +.|.+.+.||+|+||.||++...    +++.||||++...     ..+.+.+|++++.++ +||||+++++++...+   
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~  112 (313)
T 3brb_A           34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF-SHPNVIRLLGVCIEMSSQG  112 (313)
T ss_dssp             GGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTC-CCTTBCCCCEEEEC-----
T ss_pred             HHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcC-CCCCeeeeeEEEeeccccC
Confidence            55999999999999999997432    4558999998752     234688999999888 9999999999998765   


Q ss_pred             --EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 --FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 --~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        ..++||||++ |+|.+++...+.......+++..+..++.   .||.|||+.+++|||||
T Consensus       113 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dik  174 (313)
T 3brb_A          113 IPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLA  174 (313)
T ss_dssp             --CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred             CcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence              3599999999 69999997643222334566666665555   89999999999877766

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.61  E-value=3.2e-15  Score=155.15  Aligned_cols=123  Identities=20%  Similarity=0.076  Sum_probs=95.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++.      ..+++.||||++...    ....+.+|+.++.++ +||||+++++++...+..
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF-NHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSC
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhC-CCCCCCeEEEEEcCCCCc
Confidence            559999999999999999974      356789999999752    234788999999888 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC-ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF-EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~-~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|||||+ |+|.+++....... ....+....+..++.   .||.|||+.+++|||||
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlk  167 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIA  167 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCC
Confidence            99999998 69999998754211 113355554444443   89999999999887777

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.61  E-value=2.5e-15  Score=155.59  Aligned_cols=119  Identities=19%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----------hHHHHHHHHHHHhcCCCCcceeEEEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----------HDVALKEIQNLIASDQHPNIVRWYGVES  537 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~  537 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+++.||||++....           ...+.+|+++|.++ +||||+++++++.
T Consensus         7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~   85 (322)
T 2ycf_A            7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL-NHPCIIKIKNFFD   85 (322)
T ss_dssp             HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHC-CCTTBCCEEEEEE
T ss_pred             hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhC-CCCCCceEeeEEc
Confidence            344569999999999999999984 5678999999987521           12478999999888 9999999999987


Q ss_pred             eCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          538 DQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 ~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..+ .|+||||++ |+|.+++...      ..+++..+..++   +.||.|||+.+++|||||
T Consensus        86 ~~~-~~lv~e~~~~~~L~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk  141 (322)
T 2ycf_A           86 AED-YYIVLELMEGGELFDKVVGN------KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLK  141 (322)
T ss_dssp             SSS-EEEEEECCTTEETHHHHSTT------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCc-eEEEEecCCCCcHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence            665 899999999 5999998643      234554444433   389999999999887777

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.61  E-value=7e-15  Score=152.61  Aligned_cols=118  Identities=22%  Similarity=0.176  Sum_probs=96.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEE--eCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVES--DQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~--~~~~~  542 (613)
                      +.|++.+.||+|+||.||++.     ..+++.||||++....   .+.+.+|++++.++ +||||+++++++.  ..+..
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL-HSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhc-CCCceeEEEEEEecCCCceE
Confidence            459999999999999999975     4578899999998643   34689999999888 9999999999988  45679


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++...+     ..++...+..++.   .+|.|||+.+++|||||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dik  154 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRHR-----ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA  154 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHHG-----GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEeecCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC
Confidence            99999998 69999998642     2355555555444   89999999998776665

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.61  E-value=5.7e-15  Score=150.36  Aligned_cols=117  Identities=22%  Similarity=0.169  Sum_probs=94.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~  542 (613)
                      +.|.+.+.||+|+||.||++. ..++..||+|.+...     ..+.+.+|+.+|.++ +||||+++++++..    ....
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~~~~  104 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL-QHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEEESSSCEEE
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhC-CCCCeeeeeeeeccccCCCceE
Confidence            458999999999999999984 577889999998752     234688999998777 99999999999876    3579


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCC--ceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~--iiHrDlK  596 (613)
                      ++|||||+ |+|.+++....      .++...+..++   +.+|.|||+.+  ++|||||
T Consensus       105 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dik  158 (290)
T 1t4h_A          105 VLVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK  158 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCC
T ss_pred             EEEEEecCCCCHHHHHHHcc------CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCC
Confidence            99999998 69999998643      34444444443   38999999998  8776665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.61  E-value=3.9e-15  Score=167.20  Aligned_cols=119  Identities=16%  Similarity=0.156  Sum_probs=92.1

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecc------ccccCCCCCeEEEecCCCCeEEEEecCCCce
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSY------QASFNSNASEFYLDVDEDWELYFHSKRFGKM  115 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~------~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l  115 (613)
                      +.+.+.+++||+++.++.|||||+.||+++|+++...+.....      ..+. ...+.+|+. +.||.||++|+.||++
T Consensus        62 ~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a-~~~~~v~~~-t~dg~l~AlD~~TG~~  139 (582)
T 1flg_A           62 SQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA-IYGDKVFFG-TLDASVVALNKNTGKV  139 (582)
T ss_dssp             CCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE-EETTEEEEE-ETTTEEEEEESSSCCE
T ss_pred             eccEEECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE-EECCEEEEE-eCCCEEEEEECCCCCE
Confidence            3445789999999997779999999999999999875532110      0011 111245555 4599999999999999


Q ss_pred             eeecccHHH-----HhhhCceeecCC------cEEEEee------cceEEEEECCCCcEEEEEecC
Q 007199          116 KKLSSSAEE-----YIRRMPYISKDG------GVTLGAM------KTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       116 ~~~~~~~~~-----~v~~sP~~~~dg------~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~  164 (613)
                       +|.+.+..     .+.++|++. ++      .||+|+.      ++.++|+|++||+++|++...
T Consensus       140 -~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~  203 (582)
T 1flg_A          140 -VWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             -EEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             -EeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence             99987765     467899998 56      8999974      899999999999999998653

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.61  E-value=3e-15  Score=169.33  Aligned_cols=115  Identities=19%  Similarity=0.177  Sum_probs=91.4

Q ss_pred             EEEee-eEeecCceEEEEEEe---eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          475 VVFNK-EIAKGSNGTVVLEGN---YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       475 ~~~~~-~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.+.+ .||+|+||.||++..   .++..||||+++..    ..+.+.+|+++|.++ +|||||+++++|.. +..+|||
T Consensus       337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l-~hpniv~l~~~~~~-~~~~lv~  414 (613)
T 2ozo_A          337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNPYIVRLIGVCQA-EALMLVM  414 (613)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTC-CCTTBCCEEEEEES-SSEEEEE
T ss_pred             eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhC-CCCCEeeEEEEecc-CCeEEEE
Confidence            44444 899999999999743   35567999999862    456899999999777 99999999999976 5699999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++...     ...++...+..++.   .||.|||+.+|+|||||
T Consensus       415 E~~~~g~L~~~l~~~-----~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlk  463 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGK-----REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLA  463 (613)
T ss_dssp             ECCTTCBHHHHHTTC-----TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EeCCCCcHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCC
Confidence            9999 6999999753     23455555555544   89999999998877665

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.61  E-value=7.1e-15  Score=150.63  Aligned_cols=116  Identities=22%  Similarity=0.192  Sum_probs=96.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|...+.||+|+||.||++. ..+++.||||++...    ..+.+.+|+.++.++ +||||+++++++...+..++|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC-DSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEecCCeEEEEEE
Confidence            459999999999999999974 567899999999752    346889999999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |+|.+++...       .++...+..++.   .+|.|||+.+++|||||
T Consensus       101 ~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  146 (303)
T 3a7i_A          101 YLGGGSALDLLEPG-------PLDETQIATILREILKGLDYLHSEKKIHRDIK  146 (303)
T ss_dssp             CCTTEEHHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             eCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence            999 5999998632       344444444443   89999999999887776

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.61  E-value=4.9e-15  Score=153.82  Aligned_cols=119  Identities=22%  Similarity=0.239  Sum_probs=94.5

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhc-CCCCcceeEEEEEEeC----CEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIAS-DQHPNIVRWYGVESDQ----DFVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l-~~HpnIV~l~g~~~~~----~~~~L  544 (613)
                      .+.+.|.+.+.||+|+||.||++. ..++.||||++.......+.+|.+++... ++||||+++++++...    ...++
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~-~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGK-WRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEE-ETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred             ccccceEEEeEeecCCCeEEEEEE-ECCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence            444569999999999999999974 45899999999877666777777666443 4999999999999987    78999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC--------Cceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV--------MENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~--------~iiHrDlK  596 (613)
                      |||||+ |+|.++++..       .++...+..++.   .||.|||..        +|+|||||
T Consensus       113 v~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dik  169 (337)
T 3mdy_A          113 ITDYHENGSLYDYLKST-------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLK  169 (337)
T ss_dssp             EECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCC
T ss_pred             EEeccCCCcHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccc
Confidence            999999 6999999753       245555444443   899999998        77665555

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.61  E-value=2.1e-15  Score=157.45  Aligned_cols=88  Identities=27%  Similarity=0.374  Sum_probs=77.1

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--------HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+++.||+|++...        ..+.+.+|+++|.++ +||||+++++++.+.+
T Consensus        23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL-HHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSS
T ss_pred             hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhC-CCCCcceeehhhccCC
Confidence            344569999999999999999974 678899999998752        335789999999888 9999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHH
Q 007199          541 FVYLSLERCT-CSLNDLIY  558 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~  558 (613)
                      ..+||||||+ |+|.+++.
T Consensus       102 ~~~lv~e~~~gg~L~~~l~  120 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKLN  120 (345)
T ss_dssp             EEEEEEECCCSCBHHHHEE
T ss_pred             eEEEEEeCCCCCcHHHHHH
Confidence            9999999999 69999985

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.61  E-value=4.9e-15  Score=154.28  Aligned_cols=119  Identities=20%  Similarity=0.204  Sum_probs=96.5

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhc-CCCCcceeEEEEEEeCC----EEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIAS-DQHPNIVRWYGVESDQD----FVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l-~~HpnIV~l~g~~~~~~----~~~L  544 (613)
                      .+.+.|.+.+.||+|+||.||++.. +|+.||||++.....+.+.+|++++... ++||||+++++++...+    ..++
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~l  117 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL  117 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEE
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEE
Confidence            4446699999999999999999754 6999999999887777888999888774 59999999999999876    8999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHh--------cCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLL--------PVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh--------~~~iiHrDlK  596 (613)
                      ||||++ |+|.++++..       .++...+..++.   .+|.|||        +.+++|||||
T Consensus       118 v~e~~~~g~L~~~l~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlk  174 (342)
T 1b6c_B          118 VSDYHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK  174 (342)
T ss_dssp             EECCCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCS
T ss_pred             EEeecCCCcHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCC
Confidence            999999 5999999753       244444444443   8999999        6677666555

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.61  E-value=1.9e-15  Score=162.92  Aligned_cols=119  Identities=18%  Similarity=0.130  Sum_probs=94.8

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc-----------hHHHHHHHHHHHhcCCCCcceeEEEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH-----------HDVALKEIQNLIASDQHPNIVRWYGVES  537 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~-----------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~  537 (613)
                      .+.+.|.+.+.||+|+||+||++ ...+++.||||++....           ...+.+|+++|.++ +||||+++++++.
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL-NHPCIIKIKNFFD  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHC-CCTTBCCCCEEEE
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhC-CCCCEeeEEEEEe
Confidence            34456999999999999999998 46788999999997521           11478999999888 9999999999975


Q ss_pred             eCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          538 DQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       538 ~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       .+..|+|||||+ |+|.+++...      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus       211 -~~~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlk  266 (419)
T 3i6u_A          211 -AEDYYIVLELMEGGELFDKVVGN------KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLK  266 (419)
T ss_dssp             -SSEEEEEEECCTTCBGGGGTSSS------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             -cCceEEEEEcCCCCcHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence             556899999999 6998888642      3455555544443   89999999999887776

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.61  E-value=1.6e-15  Score=159.10  Aligned_cols=121  Identities=19%  Similarity=0.097  Sum_probs=92.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|...+.||+|+||.||++. ..+|+.||||++....        .+.+.+|++++.++ +||||+++++++...+..+
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL-SHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC-CCTTBCCEEEEECCTTCCE
T ss_pred             cccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhC-CCCCCCeEEEEEeeCCceE
Confidence            458999999999999999985 5679999999997521        23678999999888 9999999999999999999


Q ss_pred             EEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+|+|.+++.....  .........+...++.||.|||+.+++|||||
T Consensus        89 lv~e~~~~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk  139 (346)
T 1ua2_A           89 LVFDFMETDLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK  139 (346)
T ss_dssp             EEEECCSEEHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             EEEEcCCCCHHHHHHhcCc--CCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC
Confidence            9999999999999875321  11122223344444489999999999887776

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.60  E-value=9.1e-15  Score=148.73  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=98.8

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.+.|.+.+.||+|+||.||++. ..+++.||||++..     ...+.+.+|++++.++ +||||+++++++...+..++
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~l   98 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEILEDSSSFYI   98 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc-cCCCccEEEEEEeCCCeEEE
Confidence            34569999999999999999975 45789999999875     2456889999999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||++ ++|.+++....      .++...+..++.   .+|.+||+.+++|||||
T Consensus        99 v~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~  148 (287)
T 2wei_A           99 VGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMHKHNIVHRDLK  148 (287)
T ss_dssp             EECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEccCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence            999999 69999987543      345555444443   89999999999887766

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.60  E-value=2.4e-15  Score=151.57  Aligned_cols=117  Identities=23%  Similarity=0.235  Sum_probs=96.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|++.+.||+|+||.||++. ..+++.||||++...    ..+.+.+|++++..+ +||||+++++++...+..++|||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML-NHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhc-CCCCceeeeeEEEcCCEEEEEEE
Confidence            348999999999999999985 567999999999752    235788999988777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |+|.+++...      ..+++..+..++.   .+|.|||+.+++|||||
T Consensus        86 ~~~~~~L~~~l~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  132 (276)
T 2yex_A           86 YCSGGELFDRIEPD------IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK  132 (276)
T ss_dssp             CCTTEEGGGGSBTT------TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             ecCCCcHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            999 5999888632      2355555544444   89999999998877766

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.60  E-value=4.9e-15  Score=152.68  Aligned_cols=117  Identities=14%  Similarity=0.134  Sum_probs=97.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||+|++....      .+.+.+|++++.++ +||||+++++++...+..|+|
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRL-QEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhc-CCCCeeEEEEEEeeCCeEEEE
Confidence            349999999999999999985 5678999999997531      25788999988777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||++ |+|.+++....      .++...+..++.   .+|.|||+.+++|||||
T Consensus       113 ~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk  161 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQG------PLAPPRAVAIVRQIGSALDAAHAAGATHRDVK  161 (309)
T ss_dssp             EECCCCEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEecCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCC
Confidence            99999 59999998642      344544444443   89999999999887776

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.60  E-value=2.3e-15  Score=172.03  Aligned_cols=124  Identities=19%  Similarity=0.122  Sum_probs=101.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.++||+|+||+||++. ..+++.||||++++      ...+.+..|.++|..+.+||||+++++++.+.+.+|||
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV  420 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV  420 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEE
T ss_pred             cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEE
Confidence            349999999999999999974 67889999999985      23456888998887777899999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.++|+..+      .+++..+..++.   .||.|||+.+|+|||||    |++.+|
T Consensus       421 ~E~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g  479 (674)
T 3pfq_A          421 MEYVNGGDLMYHIQQVG------RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG  479 (674)
T ss_dssp             EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSS
T ss_pred             EeCcCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCC
Confidence            99999 69999998643      355555555444   89999999999887776    444444

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.60  E-value=5e-15  Score=155.04  Aligned_cols=119  Identities=18%  Similarity=0.234  Sum_probs=96.7

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQ-----  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----  539 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+|+.||||++....    ...+.+|+++|.++ +||||+++++++...     
T Consensus         8 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   86 (353)
T 2b9h_A            8 NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF-KHENIITIFNIQRPDSFENF   86 (353)
T ss_dssp             CSCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSCSTTC
T ss_pred             ccccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhC-cCCCcCCeeeeecccccCcc
Confidence            345669999999999999999985 5679999999997532    33678999999888 999999999998764     


Q ss_pred             CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ...++||||+.|+|.+++...       .++...+..++.   .||.|||+.+++|||||
T Consensus        87 ~~~~lv~e~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlk  139 (353)
T 2b9h_A           87 NEVYIIQELMQTDLHRVISTQ-------MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLK  139 (353)
T ss_dssp             CCEEEEECCCSEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             ceEEEEEeccCccHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            679999999999999999752       344544444443   89999999998877766

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.60  E-value=9.4e-15  Score=154.55  Aligned_cols=118  Identities=17%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----------HDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|.+.+.||+|+||.||++. ..+|+.||||+++...           .+.+.+|++++.++.+||||+++++++....
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  173 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS  173 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC
Confidence            559999999999999999985 4579999999987532           3467899999988768999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ..|||||||+ |+|.+++....      .++...+..++   +.||.|||+.+++|||||
T Consensus       174 ~~~lv~e~~~g~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlk  227 (365)
T 2y7j_A          174 FMFLVFDLMRKGELFDYLTEKV------ALSEKETRSIMRSLLEAVSFLHANNIVHRDLK  227 (365)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            9999999999 59999998542      34444444444   389999999998777766

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.60  E-value=2.6e-15  Score=160.56  Aligned_cols=124  Identities=19%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             cccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCC------EE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQD------FV  542 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~------~~  542 (613)
                      ......|...++||+|+||+||++....+..||+|++.... ....+|+++|..+ +||||++++++|...+      .+
T Consensus        36 ~~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~-~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           36 EQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK-RFKNRELQIMRIV-KHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             CEEEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT-TSCCHHHHHHHTC-CCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             CcccceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc-chHHHHHHHHHhC-CCCCcceEEEEEEecCCCCCceEE
Confidence            33445699999999999999999876566669999887532 2334789888777 9999999999997544      38


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+|+|.+.+.....  ....+++..+..++.   .||.|||+.+|+|||||
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk  168 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAK--LKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIK  168 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEeeccCccHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC
Confidence            89999999877766654221  233455555544443   89999999998877765

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.60  E-value=5.6e-15  Score=154.08  Aligned_cols=118  Identities=21%  Similarity=0.084  Sum_probs=94.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEee-C----CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNY-E----GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~-~----g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|...+.||+|+||+||++... +    +..||||+++..    ....+.+|++++.++ +||||+++++++...+..+
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF-SHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEecCCCcE
Confidence            45899999999999999997532 2    246999999863    233688999999887 9999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |+|.+++....     ..++...+..++.   .||.|||+.+++|||||
T Consensus       123 lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  174 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKD-----GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLA  174 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTT-----TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEeCCCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence            9999999 59999998632     3455555544444   89999999998877776

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.60  E-value=3.6e-15  Score=157.45  Aligned_cols=119  Identities=18%  Similarity=0.174  Sum_probs=96.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-----  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-----  539 (613)
                      .++..|...+.||+|+||.||++. ..+++.||||++...    ..+.+.+|+++|.++ +||||+++++++...     
T Consensus        24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~  102 (364)
T 3qyz_A           24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRF-RHENIIGINDIIRAPTIEQM  102 (364)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHC-CCTTBCCCCEEECCSSTTTC
T ss_pred             cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhc-CCCCCccceeEEecCCcccc
Confidence            344669999999999999999984 668899999999752    224788999999888 999999999999765     


Q ss_pred             CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ...|+||||+.|+|.++++..       .++...+..++   +.||.|||+.+|+|||||
T Consensus       103 ~~~~iv~e~~~~~L~~~l~~~-------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  155 (364)
T 3qyz_A          103 KDVYIVQDLMETDLYKLLKTQ-------HLSNDHICYFLYQILRGLKYIHSANVLHRDLK  155 (364)
T ss_dssp             CCEEEEEECCSEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             ceEEEEEcccCcCHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            368999999999999999753       24455444444   389999999998877776

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=153.73  Aligned_cols=119  Identities=23%  Similarity=0.215  Sum_probs=94.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESD--QDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~  542 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||+|++...       ..+.+.+|++++.++ +||||+++++++..  .+..
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL-RHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTC-CCTTBCCEEEEEECC---CE
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhc-CCCCeeEEEEEEEcCCCCeE
Confidence            448899999999999999974 567899999999752       235789999999777 99999999999854  4578


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+|+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus        84 ~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlk  136 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVP----EKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIK  136 (305)
T ss_dssp             EEEEECCSEEHHHHHHHST----TCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEehhccCCHHHHHHhCc----ccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence            9999999977888887642    33455555554444   89999999998877766

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.60  E-value=9.9e-15  Score=151.04  Aligned_cols=114  Identities=23%  Similarity=0.163  Sum_probs=92.5

Q ss_pred             EEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVY  543 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~  543 (613)
                      |...+.||+|+||+||++.     ..+++.||||++....    .+.+.+|+++|.++ +||||+++++++...  ...+
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~  111 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL-YHEHIIKYKGCCEDAGAASLQ  111 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTTTEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhC-CCcchhhEEEEEecCCCceEE
Confidence            5999999999999998753     4578899999998632    34689999999888 999999999999984  6899


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+ |+|.+++...       .+++..+..++.   .++.+||+.+++|||||
T Consensus       112 lv~e~~~~~~L~~~l~~~-------~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dik  161 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYLPRH-------SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLA  161 (318)
T ss_dssp             EEECCCTTCBHHHHGGGS-------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEecccCCcHHHHHhhC-------CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc
Confidence            9999999 6999999653       245555544443   89999999998877766

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.60  E-value=2.8e-15  Score=155.92  Aligned_cols=124  Identities=19%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             cccCceEEEe-eeEeecCceEEEEEE-eeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          469 RRIGKLVVFN-KEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       469 ~~i~~~~~~~-~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      ..+.+.|.+. +.||+|+||.||++. ..+++.||||++..     .....+.+|+.++..+..||||+++++++...+.
T Consensus        24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~  103 (327)
T 3lm5_A           24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE  103 (327)
T ss_dssp             HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe
Confidence            3444557776 899999999999984 56799999999885     2345889999999888778999999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .++|||||+ |+|.+++...    ....+++..+..++.   .+|.|||+.+++|||||
T Consensus       104 ~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dik  158 (327)
T 3lm5_A          104 IILILEYAAGGEIFSLCLPE----LAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLK  158 (327)
T ss_dssp             EEEEEECCTTEEGGGGGSSC----C-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             EEEEEEecCCCcHHHHHHHh----cccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCC
Confidence            999999999 5999988542    223455555555544   89999999998777665

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.60  E-value=1.2e-15  Score=161.60  Aligned_cols=119  Identities=17%  Similarity=0.173  Sum_probs=90.0

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC---
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD---  540 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~---  540 (613)
                      .+.+.|...+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|+++|..+ +||||+++++++...+   
T Consensus        22 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~~  100 (367)
T 1cm8_A           22 EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-RHENVIGLLDVFTPDETLD  100 (367)
T ss_dssp             CCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-CBTTBCCCSEEECSCSSTT
T ss_pred             eecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC-CCcCCCCceeeEecCCccc
Confidence            344669999999999999999984 578999999999652     234688999999888 9999999999998763   


Q ss_pred             ---EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          541 ---FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 ---~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                         .+|+|||||.++|.++++..       .+++..+..++   +.||.|||+.+|+|||||
T Consensus       101 ~~~~~~lv~e~~~~~L~~~~~~~-------~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlk  155 (367)
T 1cm8_A          101 DFTDFYLVMPFMGTDLGKLMKHE-------KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLK  155 (367)
T ss_dssp             TCCCCEEEEECCSEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cCceEEEEEecCCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCccccCcC
Confidence               46999999988999999752       24444444433   489999999999887776

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.60  E-value=4.6e-15  Score=154.33  Aligned_cols=117  Identities=22%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.|...+.||+|+||.||++. ..+|+.||||++....     .+.+.+|++++.++ +||||+++++++...+..++||
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL-RHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhC-CCCCEeeEEEEeecCCEEEEEE
Confidence            349999999999999999975 5679999999987532     23577999999888 9999999999999999999999


Q ss_pred             cCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++| +|.+++...      ..+++..+..++.   .+|.|||+.+++|||||
T Consensus       104 e~~~~~~l~~~~~~~------~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk  151 (331)
T 4aaa_A          104 EFVDHTILDDLELFP------NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIK  151 (331)
T ss_dssp             ECCSEEHHHHHHHST------TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             ecCCcchHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcC
Confidence            99995 777665532      2355555554444   89999999999877776

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.60  E-value=5.9e-15  Score=149.13  Aligned_cols=121  Identities=21%  Similarity=0.233  Sum_probs=96.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD--QDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~~L  544 (613)
                      +.|++.+.||+|+||.||++. ..+++.||+|++...     ..+.+.+|++++.++ +||||+++++++..  ....++
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL-KHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhc-CCCCCCeEEEEEecCCCceEEE
Confidence            349999999999999999974 568999999999752     234788999999888 99999999998865  568999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC-----ceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM-----ENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~-----iiHrDlK  596 (613)
                      ||||++ |+|.+++.....  ....+++..+..++.   .+|.|||+.+     ++|||||
T Consensus        85 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~  143 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTK--ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK  143 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCS
T ss_pred             EEeCCCCCCHHHHHHhhcc--cCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccc
Confidence            999999 599999986431  223356655555554   8999999988     8776665

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.60  E-value=9.2e-16  Score=162.89  Aligned_cols=125  Identities=10%  Similarity=-0.028  Sum_probs=90.5

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhc--CCCCcceeEE-------EE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIAS--DQHPNIVRWY-------GV  535 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l--~~HpnIV~l~-------g~  535 (613)
                      .+.|.+.+.||+|+||+||++. ..+|+.||||++...      ..+.+.+|+++|..+  ++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            3569999999999999999985 578999999998742      335788999544333  3899999998       77


Q ss_pred             EEeCC-----------------EEEEEecCCCccHHHHHHHhcCCCc-cccCCHHH---HHHHHHHHHHHHhcCCceeec
Q 007199          536 ESDQD-----------------FVYLSLERCTCSLNDLIYVLSGSFE-EQLNAKEQ---DSNLLNEVRIRLLPVMENTKD  594 (613)
Q Consensus       536 ~~~~~-----------------~~~LV~E~~~GsL~~~L~~~~~~~~-~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrD  594 (613)
                      +...+                 ..|||||||.|+|.+++........ ...++...   +...++.||.|||+.+|+|||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD  231 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  231 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            66553                 2899999999999999986531101 01111122   333444999999999987777


Q ss_pred             cc
Q 007199          595 IE  596 (613)
Q Consensus       595 lK  596 (613)
                      ||
T Consensus       232 ik  233 (377)
T 3byv_A          232 LR  233 (377)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.60  E-value=8.9e-15  Score=152.10  Aligned_cols=117  Identities=20%  Similarity=0.102  Sum_probs=88.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcE----EEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRS----VAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~----VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|...+.||+|+||+||++. ..+++.    ||+|.++.    ...+.+.+|++++.++ +||||++++++|...+ .+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~-~~   92 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHC-CBTTBCCEEEEEESSS-EE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEecCC-eE
Confidence            449999999999999999985 445554    68888764    3445899999999888 9999999999998765 77


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|+||++ |+|.+++....     ..++...+..++.   .||.|||+.+|+|||||
T Consensus        93 ~v~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dik  144 (327)
T 3poz_A           93 LITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA  144 (327)
T ss_dssp             EEEECCTTCBHHHHHHHST-----TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEEecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCC
Confidence            8899999 79999998742     2345555444443   89999999998776665

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.59  E-value=9.2e-15  Score=147.04  Aligned_cols=115  Identities=20%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|...+.||+|+||.||++. ..++.||||+++..       ..+.+.+|++++..+ +||||+++++++...+..++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAF-WIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAML-KHPNIIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEE-ETTEEEEEEEC----------CHHHHHHHHHHHHHC-CCTTBCCEEEEECCC--CEEE
T ss_pred             hheeeeeeeccCCCeEEEEEE-EcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhc-CCCCEeeEEEEEecCCceEEE
Confidence            348999999999999999975 45899999998752       235788999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC---ceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM---ENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~---iiHrDlK  596 (613)
                      |||++ |+|.+++..       ..+++..+..++.   .++.|||+.+   ++|||||
T Consensus        85 ~e~~~~~~L~~~~~~-------~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dik  135 (271)
T 3dtc_A           85 MEFARGGPLNRVLSG-------KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK  135 (271)
T ss_dssp             EECCTTEEHHHHHTS-------SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCS
T ss_pred             EEcCCCCCHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCc
Confidence            99999 699998853       2345555544443   8999999998   6666655

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.59  E-value=1.2e-14  Score=150.81  Aligned_cols=124  Identities=20%  Similarity=0.251  Sum_probs=97.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEE--EEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSV--AVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~V--AVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|.+.+.||+|+||.||++. ..++..+  |+|++...    ..+.+.+|+++|.++.+||||+++++++...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            448999999999999999984 5677754  99998752    3347889999887776899999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcC----------CCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSG----------SFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~----------~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++...+.          ......+++..+..++.   .||.|||+.+++|||||
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk  169 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA  169 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc
Confidence            99999 699999986420          00123456665555554   89999999998776665

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.59  E-value=6e-15  Score=154.01  Aligned_cols=129  Identities=15%  Similarity=0.060  Sum_probs=100.8

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCC-cEEEEEEeecc--chHHHHHHHHHHHhcCCCCc------ceeEEEEEEe
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEG-RSVAVKRLVKT--HHDVALKEIQNLIASDQHPN------IVRWYGVESD  538 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g-~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~Hpn------IV~l~g~~~~  538 (613)
                      ..+.+.|.+.+.||+|+||+||++. ..++ +.||||+++..  ..+.+.+|++++..+ +|++      ++.+++++..
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~~~~~~~~~~~~~~~~~   93 (355)
T 2eu9_A           15 DWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKI-KEKDKENKFLCVLMSDWFNF   93 (355)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHH-HHHCTTSCSCBCCEEEEEEE
T ss_pred             ceecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHH-hhcCCCCceeEEEeeeeeee
Confidence            3455679999999999999999975 3444 68999999863  345788899888777 6554      9999999999


Q ss_pred             CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          539 QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       539 ~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      .+..+||||||.|+|.+++....    ...+++..+..++.   .||.|||+.+|+|||||       |+|||+
T Consensus        94 ~~~~~lv~e~~~~~l~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlk-------p~NIll  156 (355)
T 2eu9_A           94 HGHMCIAFELLGKNTFEFLKENN----FQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLK-------PENILF  156 (355)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-------GGGEEE
T ss_pred             CCeEEEEEeccCCChHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-------HHHEEE
Confidence            99999999999988888887642    23455655555544   89999999998877765       555555

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.59  E-value=5e-15  Score=162.59  Aligned_cols=128  Identities=21%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .+.+.|.+.++||+|+||.||++. ..+++.||||++.. ...+.+.+|++++..+..|++|..+..++...+..+||||
T Consensus         4 ~i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             EETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CcCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            456679999999999999999985 57899999998875 3445788999999888555777788888888999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||.|+|.+++....     ..+.+..+..++.   .+|.|||+.+|+|||||       |+||||
T Consensus        84 ~~g~sL~~ll~~~~-----~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIK-------P~NILl  136 (483)
T 3sv0_A           84 LLGPSLEDLFNFCS-----RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIK-------PDNFLM  136 (483)
T ss_dssp             CCCCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-------GGGEEE
T ss_pred             CCCCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC-------cceEEE
Confidence            99889999998642     2455555555544   89999999998777665       566655

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=148.27  Aligned_cols=115  Identities=20%  Similarity=0.176  Sum_probs=92.0

Q ss_pred             eeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-cc
Q 007199          478 NKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-CS  552 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-Gs  552 (613)
                      ..+||+|+||.||++. ..+++.||||.+...   ..+.+.+|+.++..+ +||||+++++++...+..++||||++ |+
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  105 (295)
T 2clq_A           27 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHL-KHKNIVQYLGSFSENGFIKIFMEQVPGGS  105 (295)
T ss_dssp             BCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTC-CCTTBCCEEEEEEETTEEEEEEECCSEEE
T ss_pred             cEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhC-CCCCEeeEeeEEEeCCcEEEEEEeCCCCC
Confidence            4489999999999985 677899999999863   345788999988777 99999999999999999999999999 69


Q ss_pred             HHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          553 LNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       553 L~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.+++....   ......+..+.   ..++.||.|||+.+++|||||
T Consensus       106 L~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  149 (295)
T 2clq_A          106 LSALLRSKW---GPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIK  149 (295)
T ss_dssp             HHHHHHHTT---CCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             HHHHHHhhc---cCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCC
Confidence            999998753   22233444443   344489999999998777665

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.59  E-value=4.7e-15  Score=150.01  Aligned_cols=118  Identities=24%  Similarity=0.240  Sum_probs=93.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-DFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~~~LV~E~~~  550 (613)
                      +.|.+.+.||+|+||.||++. .+|+.||||+++.. ..+.+.+|++++.++ +||||+++++++... +..++||||++
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~-~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~lv~e~~~   98 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMA   98 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEE-ETTEEEEEEECCCCC--HHHHHTHHHHTTC-CCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred             hhceEEeEEecCCCceEEEEE-EcCCEEEEEEecchhHHHHHHHHHHHHHhC-CCCCEeeEEEEEEcCCCceEEEEecCC
Confidence            459999999999999999964 46899999999864 456789999999777 999999999997655 47899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++....    ...++...+..++.   .++.|||+.+++|||||
T Consensus        99 ~~~L~~~l~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  144 (278)
T 1byg_A           99 KGSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA  144 (278)
T ss_dssp             TEEHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             CCCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence             59999998642    22345554444443   89999999998877765

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.59  E-value=7.4e-15  Score=149.44  Aligned_cols=127  Identities=20%  Similarity=0.151  Sum_probs=94.0

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEE-EEEeCCEEEEEe
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYG-VESDQDFVYLSL  546 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g-~~~~~~~~~LV~  546 (613)
                      .+++.|.+.+.||+|+||.||++. ..+++.||||++.. ...+.+.+|++++..+ +|++++..+. ++...+..++||
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l-~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMM-QGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHH-TTSTTCCCEEEEEEETTEEEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHh-cCCCCCCeeeeecCCCCceEEEE
Confidence            445669999999999999999985 57899999998765 3344788999999888 6666555554 556778999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||+.|+|.+++....     ..++...+..++.   .||.|||+.+|+|||||       |+|||+
T Consensus        85 e~~~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk-------p~NIl~  138 (296)
T 4hgt_A           85 ELLGPSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK-------PDNFLM  138 (296)
T ss_dssp             ECCCCBHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-------GGGEEE
T ss_pred             EccCCCHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-------HHHeee
Confidence            999779999998632     2355555555544   89999999998776665       555555

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.59  E-value=8.3e-15  Score=155.78  Aligned_cols=130  Identities=21%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCC-----cceeEEEEEEeCC
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHP-----NIVRWYGVESDQD  540 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~Hp-----nIV~l~g~~~~~~  540 (613)
                      ..+.+.|.+.+.||+|+||+||++. ..+++.||||+++..  ..+.+.+|++++..+..|+     +|+++++++...+
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            3445669999999999999999984 667899999999863  2356778888887763455     4999999999999


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc--CCceeeccceecCCCcCcceee
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP--VMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~--~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ..+||||||+|+|.+++....    ...+++..+..++.   .||.|||.  .+|+||||       ||+||||
T Consensus       130 ~~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDl-------kp~NIll  192 (382)
T 2vx3_A          130 HLCLVFEMLSYNLYDLLRNTN----FRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDL-------KPENILL  192 (382)
T ss_dssp             EEEEEEECCCCBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCC-------SGGGEEE
T ss_pred             ceEEEEecCCCCHHHHHhhcC----cCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCC-------CcccEEE
Confidence            999999999999999998752    23355555554444   89999994  56766655       5666655

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.59  E-value=1.1e-14  Score=147.55  Aligned_cols=117  Identities=20%  Similarity=0.149  Sum_probs=92.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEee----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNY----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|.+.+.||+|+||+||++...    ++..||||.+...    ..+.+.+|++++.++ +||||+++++++.. +..++
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~-~~~~~   89 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNL-DHPHIVKLIGIIEE-EPTWI   89 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHH-CCTTBCCEEEEECS-SSCEE
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhC-CCCCcceEEEEEcC-CCCEE
Confidence            45999999999999999997532    2346999999863    345788999999888 99999999999865 45689


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||++ |+|.+++....     ..++...+..++   +.+|.|||+.+++|||||
T Consensus        90 v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  140 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNK-----NSLKVLTLVLYSLQICKAMAYLESINCVHRDIA  140 (281)
T ss_dssp             EEECCTTCBHHHHHHHHT-----TTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             EEecCCCCCHHHHHHhcc-----ccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc
Confidence            999999 69999998643     234444444443   389999999998777665

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.59  E-value=7.7e-15  Score=150.54  Aligned_cols=117  Identities=23%  Similarity=0.172  Sum_probs=94.2

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +...+.||+|+||.||++.. +++.||||++...       ..+.+.+|++++.++ +||||+++++++...+..++|||
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e  110 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC-QHENLVELLGFSSDGDDLCLVYV  110 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhc-CCCCeEEEEEEEecCCceEEEEE
Confidence            34457899999999999754 7899999998752       235789999999888 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |+|.+++....   ....++......++   +.+|.|||+.+++|||||
T Consensus       111 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlk  160 (307)
T 2nru_A          111 YMPNGSLLDRLSCLD---GTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIK  160 (307)
T ss_dssp             CCTTCBHHHHHHTGG---GCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             ecCCCcHHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCC
Confidence            998 69999998543   23345555544444   389999999998877766

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.59  E-value=9.1e-15  Score=151.92  Aligned_cols=124  Identities=21%  Similarity=0.181  Sum_probs=96.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeC-----CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYE-----GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~-----g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||.||++. ..+     +..||+|.+...    ..+.+.+|+++|.++.+||||+++++++...+..
T Consensus        46 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  125 (333)
T 2i1m_A           46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV  125 (333)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCce
Confidence            559999999999999999974 222     347999999863    3347889999998876899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC--------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF--------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~--------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++.......        ....++...+..++.   .||.|||+.+++|||||
T Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk  191 (333)
T 2i1m_A          126 LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVA  191 (333)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcc
Confidence            99999999 59999998643100        012345555554444   89999999998776654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.59  E-value=7.8e-15  Score=166.46  Aligned_cols=117  Identities=24%  Similarity=0.188  Sum_probs=91.8

Q ss_pred             eeeEeecCceEEEEEE---eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          478 NKEIAKGSNGTVVLEG---NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~---~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      .+.||+|+||.||++.   ..+++.||||+++..     ..+++.+|+++|.++ +|||||++++++.. +..+||||||
T Consensus       374 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~l~~~~~~-~~~~lv~E~~  451 (635)
T 4fl3_A          374 DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNPYIVRMIGICEA-ESWMLVMEMA  451 (635)
T ss_dssp             EEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHC-CCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEec-CCEEEEEEcc
Confidence            4589999999999973   245678999999862     246899999999888 99999999999964 5688999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      + |+|.++++..+      .+....+..++   +.||.|||+.+|+|||||       |+||||
T Consensus       452 ~~g~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLk-------p~NILl  502 (635)
T 4fl3_A          452 ELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEESNFVHRDLA-------ARNVLL  502 (635)
T ss_dssp             TTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-------GGGEEE
T ss_pred             CCCCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCC-------hHhEEE
Confidence            9 69999997532      34444444443   389999999998877665       555554

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.59  E-value=9.6e-15  Score=151.60  Aligned_cols=118  Identities=24%  Similarity=0.203  Sum_probs=94.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-----eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--EE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-----NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQD--FV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-----~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--~~  542 (613)
                      +.|.+.+.||+|+||.||++.     ..+++.||||++....   .+.+.+|++++.++ +||||+++++++...+  ..
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTC-CCTTBCCEEEEECC----CC
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEEecCCCce
Confidence            459999999999999999975     4578899999998633   34788999999888 9999999999987654  78


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ |+|.+++...+     ..++...+..++   +.+|.+||+.+++|||||
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dik  172 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHK-----ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA  172 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHST-----TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             EEEEECCCCCCHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCC
Confidence            99999999 69999998642     234554444443   389999999998776665

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.59  E-value=7.2e-15  Score=155.55  Aligned_cols=120  Identities=12%  Similarity=-0.036  Sum_probs=81.8

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcC-CCCcceeEE-------EEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASD-QHPNIVRWY-------GVESD  538 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~-~HpnIV~l~-------g~~~~  538 (613)
                      .|...+.||+|+||.||++. ..+|+.||||++....      .+.+.+|++++..+. +||||++++       +++..
T Consensus        63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~  142 (371)
T 3q60_A           63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAV  142 (371)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEE
T ss_pred             eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheec
Confidence            48999999999999999985 6689999999998733      235677865554442 699988865       44443


Q ss_pred             C-----------------CEEEEEecCCCccHHHHHHHhcCCCccccCCHH-------HHHHHHHHHHHHHhcCCceeec
Q 007199          539 Q-----------------DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKE-------QDSNLLNEVRIRLLPVMENTKD  594 (613)
Q Consensus       539 ~-----------------~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~-------~~~~~~~~~l~~Lh~~~iiHrD  594 (613)
                      .                 ...|||||||+|+|.++++....   .......       .+...++.||.|||+.+|+|||
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~---~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          143 QSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDF---VYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             TTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHH---SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             CCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhcc---ccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            3                 34899999999999999987531   1222222       3335566999999999998877


Q ss_pred             cc
Q 007199          595 IE  596 (613)
Q Consensus       595 lK  596 (613)
                      ||
T Consensus       220 ik  221 (371)
T 3q60_A          220 FT  221 (371)
T ss_dssp             CS
T ss_pred             CC
Confidence            76

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.59  E-value=4.3e-15  Score=153.04  Aligned_cols=117  Identities=20%  Similarity=0.272  Sum_probs=92.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      +.|.+.+.||+|+||+||++. ..++.||||++... ..+.+.+|+++|.++ +||||+++++++.  +..++||||++ 
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~-~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~--~~~~lv~e~~~~   83 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAK-WRAKDVAIKQIESESERKAFIVELRQLSRV-NHPNIVKLYGACL--NPVCLVMEYAEG   83 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEE-ETTEEEEEEECSSTTHHHHHHHHHHHHHHC-CCTTBCCEEEBCT--TTTEEEEECCTT
T ss_pred             hHeeeeeEeecCCCceEEEEE-ECCeeEEEEEecChhHHHHHHHHHHHHhcC-CCCCcCeEEEEEc--CCcEEEEEcCCC
Confidence            348999999999999999964 45889999999864 445789999999888 9999999999886  45789999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhc---CCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLP---VMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~---~~iiHrDlK  596 (613)
                      |+|.++++...   ....+....+..++   +.+|.|||+   .+++|||||
T Consensus        84 ~~L~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlk  132 (307)
T 2eva_A           84 GSLYNVLHGAE---PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLK  132 (307)
T ss_dssp             CBHHHHHHCSS---SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCS
T ss_pred             CCHHHHHhccC---CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCC
Confidence            69999998543   22334555544433   389999999   778776665

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.59  E-value=7.9e-15  Score=151.68  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=94.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--eCCcEEEEEEeecc-----chHHHHHHHHHHHhc--CCCCcceeEEEEEE-----e
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--YEGRSVAVKRLVKT-----HHDVALKEIQNLIAS--DQHPNIVRWYGVES-----D  538 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~-----~  538 (613)
                      +.|.+.+.||+|+||.||++..  .+|+.||||+++..     ....+.+|++++..+  ++||||+++++++.     .
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~   90 (326)
T 1blx_A           11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   90 (326)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             hceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCC
Confidence            4599999999999999999854  56889999998752     123577788777654  38999999999997     4


Q ss_pred             CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          539 QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       539 ~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ....++||||+.|+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus        91 ~~~~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlk  147 (326)
T 1blx_A           91 ETKLTLVFEHVDQDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK  147 (326)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHSC----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CceEEEEEecCCCCHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC
Confidence            56899999999999999998742    22355555554444   89999999999887776

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.58  E-value=3.9e-15  Score=153.15  Aligned_cols=124  Identities=20%  Similarity=0.226  Sum_probs=95.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE------eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-E
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG------NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-F  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~------~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~  541 (613)
                      +.|.+.+.||+|+||.||++.      ..+++.||||++...    ..+.+.+|++++.++.+||||+++++++...+ .
T Consensus        27 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  106 (316)
T 2xir_A           27 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP  106 (316)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSC
T ss_pred             hheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCc
Confidence            459999999999999999974      245688999999863    23468899999988878999999999998765 5


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCc----------cccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFE----------EQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~----------~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .++|||||+ |+|.+++........          ...+++..+..++.   .||.|||+.+++|||||
T Consensus       107 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dik  175 (316)
T 2xir_A          107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA  175 (316)
T ss_dssp             CEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             eEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence            999999999 599999986432100          11144444444433   89999999998877665

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.58  E-value=1.7e-14  Score=150.74  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=92.2

Q ss_pred             ccCceEEEe-eeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEE
Q 007199          470 RIGKLVVFN-KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVY  543 (613)
Q Consensus       470 ~i~~~~~~~-~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~  543 (613)
                      .+.+.|.+. ++||+|+||+||++. ..+|+.||||++...  ....+|+..+.+..+||||+++++++..    ....+
T Consensus        25 ~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           25 AVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS--PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS--HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc--HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            444558874 579999999999984 567999999999763  3344555555555699999999999986    45689


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |+|.+++....    ...+++..+..++.   .||.|||+.+++|||||
T Consensus       103 lv~e~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlk  155 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQERG----DQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVK  155 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC-----CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEeccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            9999999 59999998642    23455555555544   89999999998877766

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.58  E-value=2.1e-16  Score=164.90  Aligned_cols=116  Identities=15%  Similarity=0.117  Sum_probs=88.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc-----------hHHHHHHHHHHHhcC--------CCCcceeEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-----------HDVALKEIQNLIASD--------QHPNIVRWY  533 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-----------~~~~~~Ei~~L~~l~--------~HpnIV~l~  533 (613)
                      +.|.+.+.||+|+||+||++.. +|+.||||++....           .+.+.+|+++|..+.        .||||+++.
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            3488889999999999999754 88999999998642           267899999888773        488888888


Q ss_pred             EEEE------------------------------eCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---
Q 007199          534 GVES------------------------------DQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---  579 (613)
Q Consensus       534 g~~~------------------------------~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---  579 (613)
                      +.+.                              ..+..|||||||+ |+|.+.+..       ..+++..+..++.   
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-------~~~~~~~~~~i~~qi~  171 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-------KLSSLATAKSILHQLT  171 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-------TCCCHHHHHHHHHHHH
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-------cCCCHHHHHHHHHHHH
Confidence            7754                              2678999999998 666555532       2345555555544   


Q ss_pred             HHHHHHh-cCCceeeccc
Q 007199          580 EVRIRLL-PVMENTKDIE  596 (613)
Q Consensus       580 ~~l~~Lh-~~~iiHrDlK  596 (613)
                      .||.||| +.+|+|||||
T Consensus       172 ~aL~~lH~~~~ivHrDlK  189 (336)
T 2vuw_A          172 ASLAVAEASLRFEHRDLH  189 (336)
T ss_dssp             HHHHHHHHHHCCBCSCCC
T ss_pred             HHHHHHHHhCCEeECCCC
Confidence            8999999 8998877776

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=8.4e-15  Score=149.35  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=91.4

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCc---EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE-EEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGR---SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV-YLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~---~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~-~LV  545 (613)
                      |...+.||+|+||+||++. ..++.   .||+|.+...    ..+.+.+|++++.++ +||||+++++++...+.. ++|
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGL-NHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTC-CCTTBCCCCEEECCSSSCCEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEecCCCCcEEE
Confidence            7788999999999999975 33333   7999998863    234788999999888 999999999999877655 999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+. |+|.+++...     ...++...+..++   +.||.|||+.+++|||||
T Consensus       102 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dik  151 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSP-----QRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLA  151 (298)
T ss_dssp             ECCCTTCBHHHHHHCT-----TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EecccCCCHHHHHhcc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99998 7999999753     2234444444433   389999999999877776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.58  E-value=6e-15  Score=165.20  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=91.8

Q ss_pred             eeeEeecCceEEEEE-EeeCCcEEEEEEeecc-------------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          478 NKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKT-------------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~-------------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      ....+.|++|.+..+ +.+.|+.+|||.+.+.             ..++|.+|+++|.++..|+||+++++++++++..|
T Consensus       239 ~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~y  318 (569)
T 4azs_A          239 QNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGW  318 (569)
T ss_dssp             ECC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEE
T ss_pred             hhccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEE
Confidence            345778888887774 5788999999999752             12379999999999989999999999999999999


Q ss_pred             EEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          544 LSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       544 LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||||+| +|.++|...      ..++...+.+.++.||.|+|+++|||||||    |+..||
T Consensus       319 LVMEyv~G~~L~d~i~~~------~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg  376 (569)
T 4azs_A          319 LVMEKLPGRLLSDMLAAG------EEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQ  376 (569)
T ss_dssp             EEEECCCSEEHHHHHHTT------CCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTS
T ss_pred             EEEecCCCCcHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCC
Confidence            99999995 999999853      345667788888899999999999988877    555555

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=150.06  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=88.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHh-cCCCCcceeEEEEEEe-----CCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIA-SDQHPNIVRWYGVESD-----QDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~-l~~HpnIV~l~g~~~~-----~~~~~LV~  546 (613)
                      +.|.+.+.||+|+||.||++ ..+++.||||++.....+.+..|.+++.. .++||||+++++.+..     ....+|||
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~-~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~   91 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKG-SLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVM   91 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEE-EETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEE
T ss_pred             HHhheeeecccCCCeEEEEE-EECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEE
Confidence            34999999999999999997 45889999999988777777666655432 3599999999986653     23679999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHH---HHHHHHHHHHHhcC---------Cceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQD---SNLLNEVRIRLLPV---------MENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lh~~---------~iiHrDlK  596 (613)
                      |||+ |+|.++++...       .+....   ...++.||.|||+.         +|+|||||
T Consensus        92 e~~~~g~L~~~l~~~~-------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dik  147 (336)
T 3g2f_A           92 EYYPNGSLXKYLSLHT-------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLN  147 (336)
T ss_dssp             CCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCS
T ss_pred             ecCCCCcHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccc
Confidence            9998 69999997642       133333   33344899999998         88776665

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=2e-14  Score=146.12  Aligned_cols=115  Identities=20%  Similarity=0.191  Sum_probs=90.2

Q ss_pred             EEEee-eEeecCceEEEEEE---eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          475 VVFNK-EIAKGSNGTVVLEG---NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       475 ~~~~~-~LG~G~fG~Vyk~~---~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      |.+.+ .||+|+||.||++.   ..+++.||||+++..    ..+.+.+|++++.++ +||||+++++++ ..+..++||
T Consensus        11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~-~~~~~~lv~   88 (287)
T 1u59_A           11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNPYIVRLIGVC-QAEALMLVM   88 (287)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEE-ESSSEEEEE
T ss_pred             hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhC-CCCCEeEEEEEe-cCCCcEEEE
Confidence            55554 99999999999974   346788999999863    334788999999888 999999999999 556799999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||++ |+|.+++...     ...+++..+..++.   .+|.|||+.+++|||||
T Consensus        89 e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  137 (287)
T 1u59_A           89 EMAGGGPLHKFLVGK-----REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLA  137 (287)
T ss_dssp             ECCTTEEHHHHHTTC-----TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EeCCCCCHHHHHHhC-----CccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCc
Confidence            9999 5999999642     23355555555544   89999999988766654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.57  E-value=8.5e-15  Score=149.57  Aligned_cols=118  Identities=19%  Similarity=0.135  Sum_probs=91.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEee----CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNY----EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESD-QDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~----~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~~  543 (613)
                      ..|.+.+.||+|+||+||++...    ....+|+|.+...    ..+.+.+|++++.++ +||||+++++++.. .+..+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~  103 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF-SHPNVLSLLGICLRSEGSPL  103 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTC-CCTTBCCCCEEECCSSSCCE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhC-CCCCEeeeeeEEEcCCCceE
Confidence            34899999999999999997522    2336899998762    234788999999888 99999999998654 55889


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+ |+|.++++..     ...++...+..+   ++.++.|||+.+++|||||
T Consensus       104 ~v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dik  155 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNE-----THNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLA  155 (298)
T ss_dssp             EEEECCTTCBHHHHHHCT-----TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEeCCCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc
Confidence            9999999 5999999753     223444444443   3389999999998877766

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.57  E-value=1.5e-14  Score=152.65  Aligned_cols=118  Identities=10%  Similarity=0.093  Sum_probs=87.6

Q ss_pred             CceEEEeeeEeecCceEEEEEEee------CCcEEEEEEeeccchHHHH---------------HHHHHHHhcCCCCcce
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGNY------EGRSVAVKRLVKTHHDVAL---------------KEIQNLIASDQHPNIV  530 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~~------~g~~VAVK~l~~~~~~~~~---------------~Ei~~L~~l~~HpnIV  530 (613)
                      .+.|.+.+.||+|+||.||++...      .++.||||++..... .+.               .|+..+..+ +||||+
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~e~~~~~~~~~~~~~~e~~~~~~l-~h~~iv  111 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG-PLFTELKFYQRAAKPEQIQKWIRTRKL-KYLGVP  111 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH-HHHHHHHHHHHHCCHHHHHHHHHHTTC-SCCCSC
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccch-hHHHHHHHHHhhhhhHHHHHHHHHhhc-cCCCCC
Confidence            346999999999999999998533      257899999886432 233               333333333 799999


Q ss_pred             eEEEEEEeC----CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          531 RWYGVESDQ----DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       531 ~l~g~~~~~----~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++++++...    ...|||||||.|+|.+++...     ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~-----~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlk  179 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEAN-----AKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIK  179 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHT-----TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             eEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCC
Confidence            999999875    468999999966999999864     23455655555554   89999999998877765

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=152.93  Aligned_cols=118  Identities=12%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             CceEEEeeeEeecCceEEEEEEee---------CCcEEEEEEeeccchHHHHHHHHHHHhcCCCCccee-----------
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGNY---------EGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVR-----------  531 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~~---------~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~-----------  531 (613)
                      ++.|.+.+.||+|+||.||++...         .++.||||++...  +.+.+|++++.++ +||||++           
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~  117 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFNEQNFFQRA-AKPLQVNKWKKLYSTPLL  117 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHHHHHHHHHH-CCHHHHHHHHHHTTCTTC
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHHHHHHHHHh-cccchhhhhhhhccCCcc
Confidence            356999999999999999998533         4889999999864  5688999999888 9999987           


Q ss_pred             ----EEEEEEe-CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          532 ----WYGVESD-QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       532 ----l~g~~~~-~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                          +++++.. .+..|||||||.|+|.+++...    ....+++..+..++.   .||.|||+.+++|||||
T Consensus       118 ~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~----~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dik  186 (352)
T 2jii_A          118 AIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVS----PKHVLSERSVLQVACRLLDALEFLHENEYVHGNVT  186 (352)
T ss_dssp             SCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHS----GGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCC
T ss_pred             CccchhhccccCCcEEEEEecCCCcCHHHHHHhC----CcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC
Confidence                6788876 6799999999966999999864    234566666655554   89999999999877766

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=4.1e-15  Score=170.32  Aligned_cols=120  Identities=23%  Similarity=0.215  Sum_probs=93.0

Q ss_pred             ccccCceEEEeeeEeecCceEEEEEEe-e-CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          468 GRRIGKLVVFNKEIAKGSNGTVVLEGN-Y-EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       468 ~~~i~~~~~~~~~LG~G~fG~Vyk~~~-~-~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      +..+.+.|.+.+.||+|+||+||++.. . +|+.||||++...    ..+.+.+|+++|.++ +||||+++++++...+.
T Consensus        75 g~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  153 (681)
T 2pzi_A           75 GDIVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEV-VHPSIVQIFNFVEHTDR  153 (681)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGC-CCTTBCCEEEEEEEECT
T ss_pred             CCEeCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhc-CCCCcCeEeeeEeecCC
Confidence            345556799999999999999999853 3 6899999998753    233678999988777 99999999999987665


Q ss_pred             -----EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 -----VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 -----~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                           .|||||||+ |+|.+++..        .++...+..++.   .+|.|||+.+|+|||||
T Consensus       154 ~~~~~~~lv~E~~~g~~L~~~~~~--------~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlk  209 (681)
T 2pzi_A          154 HGDPVGYIVMEYVGGQSLKRSKGQ--------KLPVAEAIAYLLEILPALSYLHSIGLVYNDLK  209 (681)
T ss_dssp             TSCEEEEEEEECCCCEECC----C--------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCCceeEEEEEeCCCCcHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHCCCeecccC
Confidence                 799999999 599887652        345555554444   89999999998877765

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.57  E-value=3.7e-15  Score=154.76  Aligned_cols=117  Identities=17%  Similarity=0.062  Sum_probs=89.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcE----EEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRS----VAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~----VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|...+.||+|+||+||++. ..+++.    ||+|.+...    ..+.+.+|+.++.++ +||||+++++++. .+..+
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-~~~~~   90 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL-DHAHIVRLLGLCP-GSSLQ   90 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTC-CCTTBCCEEEEEC-BSSEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcC-CCCCcCeEEEEEc-CCccE
Confidence            449999999999999999985 555654    788877642    234677899888777 9999999999886 45688


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHH---HHHHHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDS---NLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      +|||||+ |+|.+++...+     ..++...+.   ..++.||.|||+.+|+|||||
T Consensus        91 ~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik  142 (325)
T 3kex_A           91 LVTQYLPLGSLLDHVRQHR-----GALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLA  142 (325)
T ss_dssp             EEEECCTTCBSHHHHHSSG-----GGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEeCCCCCHHHHHHHcc-----ccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            9999999 79999998632     223333333   344499999999998877766

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.57  E-value=1.3e-15  Score=161.40  Aligned_cols=157  Identities=16%  Similarity=0.131  Sum_probs=89.2

Q ss_pred             CCCCCCC-EEEEEecCCcEEEEeCCCCeeeEEeeCCCc--eeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeec
Q 007199           43 PLPPEPD-VALVAALDGTIHLVDTKLGKIRWSFGTGRP--IYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLS  119 (613)
Q Consensus        43 ~~~~~~~-~v~v~t~dG~l~ald~~tG~~~W~~~~~~~--i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~  119 (613)
                      .+.+.++ ++++++.||+|||+|+.||+.+|+++...+  +.++   +.... +..++.++.||.||++|+.+|++ +|.
T Consensus        43 ~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s---p~~~~-~~~v~~g~~dg~v~a~D~~tG~~-~w~  117 (369)
T 2hz6_A           43 VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS---PCRSS-DGILYMGKKQDIWYVIDLLTGEK-QQT  117 (369)
T ss_dssp             CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC---SCC------CCCCEEEEEEEEECCC--------
T ss_pred             cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC---ceEec-CCEEEEEeCCCEEEEEECCCCcE-EEE
Confidence            3345566 455558999999999999999999865422  2222   11111 23444556699999999999999 999


Q ss_pred             ccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          120 SSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       120 ~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                      +.....+..+|   .++.||+|+.+++++++|++||+++|++.....  +.|....+.                     .
T Consensus       118 ~~~~~~~~~~p---~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~--~~~~~~~~~---------------------~  171 (369)
T 2hz6_A          118 LSSAFADSLSP---STSLLYLGRTEYTITMYDTKTRELRWNATYFDY--AASLPEDDV---------------------D  171 (369)
T ss_dssp             ------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--CCBCCCCCT---------------------T
T ss_pred             ecCCCcccccc---cCCEEEEEecCCEEEEEECCCCCEEEeEecccc--cCccccCCc---------------------c
Confidence            99888777788   488999999999999999999999999875431  122211100                     0


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      .++.||++..|+.|+|+|+++|+++|+..++
T Consensus       172 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          172 YKMSHFVSNGDGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             CCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred             ccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            2358999999999999999999999998854

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.57  E-value=2.8e-15  Score=156.65  Aligned_cols=118  Identities=13%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccch--------------------HHHHHHHHHHHhcCCCCcceeE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHH--------------------DVALKEIQNLIASDQHPNIVRW  532 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~--------------------~~~~~Ei~~L~~l~~HpnIV~l  532 (613)
                      +.|.+.+.||+|+||.||++.. +|+.||||++.....                    +.+.+|++++.++ +||||+++
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~  108 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDI-KNEYCLTC  108 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTC-CCTTBCCC
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhC-CCCCcceE
Confidence            4599999999999999999866 999999999985211                    7899999999877 99999999


Q ss_pred             EEEEEeCCEEEEEecCCC-ccHHHH------HHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          533 YGVESDQDFVYLSLERCT-CSLNDL------IYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       533 ~g~~~~~~~~~LV~E~~~-GsL~~~------L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      ++++...+..++|||||+ |+|.++      +...    ....++...+..++.   .||.|||+ .+++|||||
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~----~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~  179 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN----YTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVK  179 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSS----SCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCC
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc----cccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCC
Confidence            999999999999999999 599988      4321    134456655555544   89999998 898887766

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.57  E-value=2.1e-14  Score=161.37  Aligned_cols=163  Identities=12%  Similarity=0.100  Sum_probs=114.2

Q ss_pred             CCCE----EEEEecCCcEEEEeCCCCeeeEEeeCCC-----ceeeccccccCCCCCeEEEecC-----CCCeEEEEecCC
Q 007199           47 EPDV----ALVAALDGTIHLVDTKLGKIRWSFGTGR-----PIYSSYQASFNSNASEFYLDVD-----EDWELYFHSKRF  112 (613)
Q Consensus        47 ~~~~----v~v~t~dG~l~ald~~tG~~~W~~~~~~-----~i~s~~~~~~~~~~~~~~i~~~-----~DG~lY~~~~~~  112 (613)
                      .++.    ||+++.||.|||||+.||+++|+++.+.     .+.++   +...+ +.+|+..+     .||.||++|++|
T Consensus       116 ~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss---P~v~~-g~V~vg~~g~e~g~~g~v~A~D~~T  191 (599)
T 1w6s_A          116 GDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA---PYVVK-DKVIIGSSGAELGVRGYLTAYDVKT  191 (599)
T ss_dssp             CCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC---CEEET-TEEEECCBCGGGTCCCEEEEEETTT
T ss_pred             cCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC---CEEEC-CEEEEEecccccCCCCeEEEEECCC
Confidence            6777    9999999999999999999999998765     33333   11111 24565543     489999999999


Q ss_pred             CceeeecccHHHHh--------------------------------------hhCceee-cCCcEEEEeec---------
Q 007199          113 GKMKKLSSSAEEYI--------------------------------------RRMPYIS-KDGGVTLGAMK---------  144 (613)
Q Consensus       113 G~l~~~~~~~~~~v--------------------------------------~~sP~~~-~dg~v~~Gs~~---------  144 (613)
                      |++ +|.+.+....                                      ..+|.+. ++|.||+|+.+         
T Consensus       192 G~~-~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r  270 (599)
T 1w6s_A          192 GEQ-VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR  270 (599)
T ss_dssp             CCE-EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             CcE-EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence            999 9988765322                                      1234442 47889999875         


Q ss_pred             -------ceEEEEECCCCcEEEEEecCCCC------CCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeee
Q 007199          145 -------TSVFLVDVKSGRVVDNYVLDFSA------STPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDY  211 (613)
Q Consensus       145 -------~~~~~vD~~tG~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~  211 (613)
                             ++++|||++||+++|.|......      .++|..                .+....+. ..-..|+.+..++
T Consensus       271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l----------------~d~~~~~G-~~~~~v~~~~~~G  333 (599)
T 1w6s_A          271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML----------------SEQKDKDG-KARKLLTHPDRNG  333 (599)
T ss_dssp             CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE----------------EEEECTTS-CEEEEEEEECTTS
T ss_pred             CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE----------------EeccccCC-cEEEEEEEECCCc
Confidence                   48999999999999999875320      111111                11000000 0002567788999


Q ss_pred             EEEEEeCCCCceEEEEEece
Q 007199          212 VLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       212 ~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .||++|++||+++|...+..
T Consensus       334 ~l~~lD~~tG~~lw~~~~~~  353 (599)
T 1w6s_A          334 IVYTLDRTDGALVSANKLDD  353 (599)
T ss_dssp             EEEEEETTTCCEEEEEESST
T ss_pred             EEEEEECCCCCEeecccccC
Confidence            99999999999999988653

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.56  E-value=2.6e-14  Score=147.20  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCC-CCcceeEEEEEEeCCEEEEEe
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQ-HPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~-HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      +.|.+.+.||+|+||.||++...+++.||||++...     ..+.+.+|++++.++.. ||||+++++++...+..++||
T Consensus        28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  107 (313)
T 3cek_A           28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  107 (313)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEE
T ss_pred             ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEE
Confidence            569999999999999999987677999999999752     23578899999988832 699999999999999999999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |++.|+|.+++....      .++...+..+   ++.||.|||+.+++|||||
T Consensus       108 e~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk  154 (313)
T 3cek_A          108 ECGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK  154 (313)
T ss_dssp             CCCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             ecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCceecCCC
Confidence            966689999998642      3444444333   3389999999998776655

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.56  E-value=4.3e-15  Score=151.75  Aligned_cols=123  Identities=23%  Similarity=0.247  Sum_probs=84.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||.||++. ..+++.||||++...    ..+.+.+|++++.++ +||||+++++++...+..++|||
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   93 (303)
T 2vwi_A           15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQC-HHPNIVSYYTSFVVKDELWLVMK   93 (303)
T ss_dssp             CCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCC-CCTTBCCEEEEEESSSCEEEEEE
T ss_pred             hhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhc-CCCCEeeEEEEEeecCCcEEEeh
Confidence            459999999999999999984 568899999998753    344788999888776 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCC--CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGS--FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~--~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |++ |+|.+++......  .....++...+..++.   .||.|||+.+++|||||
T Consensus        94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~  148 (303)
T 2vwi_A           94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVK  148 (303)
T ss_dssp             CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            998 6999999753211  0123455555555544   89999999999887776

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.56  E-value=2.3e-14  Score=146.00  Aligned_cols=116  Identities=23%  Similarity=0.203  Sum_probs=91.2

Q ss_pred             ceEEEee-eEeecCceEEEEEE---eeCCcEEEEEEeeccc-----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNK-EIAKGSNGTVVLEG---NYEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~-~LG~G~fG~Vyk~~---~~~g~~VAVK~l~~~~-----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|.+.+ .||+|+||.||++.   ..+++.||||+++...     .+.+.+|++++..+ +||||+++++++ ..+..+
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC-CCTTBCCEEEEE-ESSSEE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEE-CCCCcE
Confidence            3488877 99999999999973   3456789999998532     45789999999888 999999999999 567889


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +||||++ |+|.+++...+      .++...+..++.   .+|.|||+.+++|||||
T Consensus        94 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dik  144 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEESNFVHRDLA  144 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEeCCCCCHHHHHHhCc------CCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCC
Confidence            9999999 69999998642      344544444443   89999999988776655

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.56  E-value=2.2e-14  Score=160.73  Aligned_cols=161  Identities=13%  Similarity=0.147  Sum_probs=114.6

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-----ceeeccccccCCCCCeEEEecCC-----CCeEEEEecCCC
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-----PIYSSYQASFNSNASEFYLDVDE-----DWELYFHSKRFG  113 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-----~i~s~~~~~~~~~~~~~~i~~~~-----DG~lY~~~~~~G  113 (613)
                      +++.++.||+++.||.|||||+.||+++|+++.+.     .+.++   +...+ +.+|+....     ||.||++|+.||
T Consensus       111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA---PFVAK-DTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC---CEEET-TEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC---CEEEC-CEEEEEecCCccCCCCEEEEEECCCC
Confidence            44678999999999999999999999999998765     33333   11111 346665543     899999999999


Q ss_pred             ceeeecccHHHHh-h-------------------------------------hCceee-cCCcEEEEeec----------
Q 007199          114 KMKKLSSSAEEYI-R-------------------------------------RMPYIS-KDGGVTLGAMK----------  144 (613)
Q Consensus       114 ~l~~~~~~~~~~v-~-------------------------------------~sP~~~-~dg~v~~Gs~~----------  144 (613)
                      ++ +|.+.+.... .                                     .++.+. +++.||+|+..          
T Consensus       187 ~~-~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~  265 (571)
T 2ad6_A          187 EL-KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRP  265 (571)
T ss_dssp             CE-EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSC
T ss_pred             cE-EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccC
Confidence            99 9987654321 0                                     123443 35789998842          


Q ss_pred             ------ceEEEEECCCCcEEEEEecCCC------CCCCCCcCCCCCccccCCCccccccccccccccccc----EEEEEe
Q 007199          145 ------TSVFLVDVKSGRVVDNYVLDFS------ASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ----LVYIMR  208 (613)
Q Consensus       145 ------~~~~~vD~~tG~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~igr  208 (613)
                            ++++|||++||+++|++.....      ..++|+..+                     . ..++    .++++.
T Consensus       266 gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~---------------------~-~~~G~~~~~v~~~~  323 (571)
T 2ad6_A          266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTD---------------------Q-PVNGKMTPLLSHID  323 (571)
T ss_dssp             SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEE---------------------E-EETTEEEEEEEEEC
T ss_pred             CCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEe---------------------c-ccCCcEEEEEEEeC
Confidence                  3699999999999999986521      011221110                     0 0122    477888


Q ss_pred             eeeEEEEEeCCCCceEEEEEece
Q 007199          209 TDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       209 ~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .++.|+++|+++|+++|.+.+..
T Consensus       324 ~~G~l~~lD~~tG~~~w~~~~~~  346 (571)
T 2ad6_A          324 RNGILYTLNRENGNLIVAEKVDP  346 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEESST
T ss_pred             CCcEEEEEECCCCCEEeeecccC
Confidence            89999999999999999988754

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.56  E-value=6e-15  Score=156.27  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=95.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE-
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV-  542 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~-  542 (613)
                      .+.+.|...+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|+.++..+ +||||+++++++...+.. 
T Consensus        39 ~l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~  117 (371)
T 4exu_A           39 ELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM-QHENVIGLLDVFTPASSLR  117 (371)
T ss_dssp             EEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSST
T ss_pred             cccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhc-CCCCchhhhhheeccCCcc
Confidence            345669999999999999999984 678999999999862     234788999999888 999999999999877654 


Q ss_pred             -----EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 -----YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 -----~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                           |+||||+.|+|.+++..        .+++..+..++.   .||.|||+.+|+|||||
T Consensus       118 ~~~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  171 (371)
T 4exu_A          118 NFYDFYLVMPFMQTDLQKIMGM--------EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLK  171 (371)
T ss_dssp             TCCCCEEEEECCCEEHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             cceeEEEEEccccccHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcC
Confidence                 99999999999888742        245555544443   89999999999887776

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.56  E-value=7e-15  Score=156.15  Aligned_cols=117  Identities=20%  Similarity=0.156  Sum_probs=90.5

Q ss_pred             eEEEeeeEeecCceEEEEEEe-eC-C--cEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-YE-G--RSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESD-QDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-~~-g--~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~~L  544 (613)
                      .|.+.+.||+|+||+||++.. .+ +  ..||||.++..    ..+.+.+|+.+|.++ +||||+++++++.. .+..++
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~~l  168 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF-SHPNVLSLLGICLRSEGSPLV  168 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTC-CCTTBCCCCEEECCCSSCCEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEEcCCCCeEE
Confidence            378899999999999999753 22 2  36899998752    335788999888777 99999999998765 458899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.++++...     ..+....+..+   ++.||.|||+.+|+|||||
T Consensus       169 v~e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  219 (373)
T 3c1x_A          169 VLPYMKHGDLRNFIRNET-----HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA  219 (373)
T ss_dssp             EEECCTTCBHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEECCCCCCHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccc
Confidence            999999 69999997532     23344444433   3489999999999877766

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.56  E-value=1.5e-14  Score=149.99  Aligned_cols=123  Identities=20%  Similarity=0.221  Sum_probs=94.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|...+.||+|+||.||++. ..+|+.||||++....    ...+..|+..+.+..+||||+++++++...+..++|||
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e  101 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME  101 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence            448899999999999999975 5679999999998632    23566777656666699999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      |++|+|.+++...... ....++...+..++.   .++.|||+. +++|||||
T Consensus       102 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlk  153 (327)
T 3aln_A          102 LMSTSFDKFYKYVYSV-LDDVIPEEILGKITLATVKALNHLKENLKIIHRDIK  153 (327)
T ss_dssp             CCSEEHHHHHHHHHHT-TCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCC
T ss_pred             ecCCChHHHHHHHHhh-hcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCC
Confidence            9999998888742110 123455555544444   899999998 88776665

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.56  E-value=1.1e-14  Score=148.42  Aligned_cols=118  Identities=20%  Similarity=0.147  Sum_probs=90.7

Q ss_pred             ccCceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .....|.+.+.||+|+||+||++..  ...||||+++..     ..+.+.+|+++|.++ +||||+++++++ ..+..++
T Consensus        21 i~~~~y~~~~~lG~G~~g~Vy~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~-~~~~~~l   96 (289)
T 3og7_A           21 IPDGQITVGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT-RHVNILLFMGYS-TAPQLAI   96 (289)
T ss_dssp             CCTTSCEEEEEEEECSSEEEEEEES--SSEEEEEEESCSSCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEE-CSSSCEE
T ss_pred             cCccceeeeeEecCCCCeEEEEEEE--cCceEEEEEeccCCCHHHHHHHHHHHHHHHhC-CCCcEEEEEeec-cCCccEE
Confidence            3345699999999999999999742  346999998752     234788999999777 999999999965 5567899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.+++...     ...++...+..++.   .+|.|||+.+++|||||
T Consensus        97 v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlk  147 (289)
T 3og7_A           97 VTQWCEGSSLYHHLHAS-----ETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLK  147 (289)
T ss_dssp             EEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEecCCCcHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence            999999 6999999643     23355554444443   89999999998877766

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.56  E-value=5e-14  Score=143.41  Aligned_cols=121  Identities=20%  Similarity=0.125  Sum_probs=94.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEE-EEEeCCEEEEEe
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYG-VESDQDFVYLSL  546 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g-~~~~~~~~~LV~  546 (613)
                      .+.+.|.+.+.||+|+||.||++. ..+|+.||||++.. ...+.+.+|++++..+ +|++++..+. ++...+..++||
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l-~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMM-QGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHH-TTSTTCCCEEEEEEETTEEEEEE
T ss_pred             eeccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHh-hcCCCCCccccccCCCCceEEEE
Confidence            455669999999999999999985 58899999999875 3445789999999888 7766555544 556778899999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+.|+|.+++...+     ..+++..+..++.   .||.|||+.+++|||||
T Consensus        85 e~~~~~L~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk  132 (296)
T 3uzp_A           85 ELLGPSLEDLFNFCS-----RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK  132 (296)
T ss_dssp             ECCCCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             EecCCCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            999779999998532     2355555555444   89999999998777665

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.55  E-value=3.1e-14  Score=148.15  Aligned_cols=117  Identities=20%  Similarity=0.102  Sum_probs=92.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcE----EEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRS----VAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~----VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      +.|...+.||+|+||.||++. ..+++.    ||+|.+..    ...+.+.+|++++.++ +||||+++++++.... .+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~-~~   92 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTC-CBTTBCCCCEEEESSS-EE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhC-CCCCeeEEEEEEecCC-ce
Confidence            449999999999999999985 556654    57777754    3456899999999777 9999999999998765 77


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +|+||+. |+|.+++....     ..++...+..++.   .||.|||+.+|+|||||
T Consensus        93 ~v~~~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  144 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHK-----DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA  144 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEEecCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCC
Confidence            8899999 79999998743     2355555544443   89999999998776655

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.55  E-value=4.4e-15  Score=157.35  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=88.4

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ----  539 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~----  539 (613)
                      .+.+.|...+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|+++|..+ +||||+++++++...    
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~  104 (367)
T 2fst_X           26 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM-KHENVIGLLDVFTPARSLE  104 (367)
T ss_dssp             EEETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSGG
T ss_pred             CCCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEecCCccc
Confidence            344669999999999999999984 678999999999752     234788999999888 999999999999764    


Q ss_pred             --CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          540 --DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 --~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                        ...|+||||+.++|.++++..       .++...+..++   +.||.|||+.+|+|||||
T Consensus       105 ~~~~~~lv~e~~~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlk  159 (367)
T 2fst_X          105 EFNDVYLVTHLMGADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIHSADIIHRDLK  159 (367)
T ss_dssp             GCCCCEEEEECCCEECC-----C-------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCeEEEEecccCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence              568999999988999988642       34554444444   389999999999887766

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.55  E-value=2.6e-14  Score=150.01  Aligned_cols=121  Identities=21%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE-------E
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF-------V  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~-------~  542 (613)
                      +.|.+.+.||+|+||.||++. ..+|+.||||++...  ......+|++.+..+ +||||+++++++...+.       .
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~~  101 (360)
T 3e3p_A           23 DRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVL-HHPNIVQLQSYFYTLGERDRRDIYL  101 (360)
T ss_dssp             TTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHH-CCTTBCCEEEEEEEECSSCTTCEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhc-CCCCcccHHHhhhccccccccceeE
Confidence            349999999999999999985 577999999998753  334677788778777 99999999999976443       8


Q ss_pred             EEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHh--cCCceeeccc
Q 007199          543 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLL--PVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh--~~~iiHrDlK  596 (613)
                      ++|||||+|+|.+.+.....  ....++...+..++   +.++.|||  +.+|+|||||
T Consensus       102 ~lv~e~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlk  158 (360)
T 3e3p_A          102 NVVMEYVPDTLHRCCRNYYR--RQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIK  158 (360)
T ss_dssp             EEEEECCSCBHHHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCC
T ss_pred             EEEeecccccHHHHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCC
Confidence            99999999988777664321  23344555444443   38999999  8888777665

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.54  E-value=1.3e-14  Score=150.49  Aligned_cols=124  Identities=18%  Similarity=0.097  Sum_probs=97.6

Q ss_pred             cccccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---------hHHHHHHHHHHHhcC-CCCcceeEEEE
Q 007199          467 DGRRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---------HDVALKEIQNLIASD-QHPNIVRWYGV  535 (613)
Q Consensus       467 ~~~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---------~~~~~~Ei~~L~~l~-~HpnIV~l~g~  535 (613)
                      ....+.+.|.+.+.||+|+||.||++. ..+++.||||++....         .+.+.+|+.++.++. .||||++++++
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~  116 (320)
T 3a99_A           37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW  116 (320)
T ss_dssp             ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred             ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence            334455669999999999999999984 6788999999998631         235678998898873 36999999999


Q ss_pred             EEeCCEEEEEecCCC--ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          536 ESDQDFVYLSLERCT--CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       536 ~~~~~~~~LV~E~~~--GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +...+..++|||++.  ++|.+++....      .+++..+..++   +.||.|||+.+|+|||||
T Consensus       117 ~~~~~~~~lv~e~~~~~~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk  176 (320)
T 3a99_A          117 FERPDSFVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCHNCGVLHRDIK  176 (320)
T ss_dssp             EECSSEEEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EecCCcEEEEEEcCCCCccHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCC
Confidence            999999999999997  59999998642      34455544443   389999999998777665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.54  E-value=3.4e-14  Score=159.49  Aligned_cols=170  Identities=12%  Similarity=0.068  Sum_probs=114.7

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc-----eeeccccccC-CCCC-eEEEecC-----CCCeEEEEecC
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP-----IYSSYQASFN-SNAS-EFYLDVD-----EDWELYFHSKR  111 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~-----i~s~~~~~~~-~~~~-~~~i~~~-----~DG~lY~~~~~  111 (613)
                      +++.++.||+++.||.|||||+.||+++|+++.+.+     +.+++...-. .+.. .+|+..+     .+|.||++|+.
T Consensus       113 ~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~  192 (582)
T 1flg_A          113 AAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD  192 (582)
T ss_dssp             CEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence            345789999999999999999999999999987652     3222111000 0111 3555442     48999999999


Q ss_pred             CCceeeecccHHHH-----------------------------------------hhhCceee-cCCcEEEEee------
Q 007199          112 FGKMKKLSSSAEEY-----------------------------------------IRRMPYIS-KDGGVTLGAM------  143 (613)
Q Consensus       112 ~G~l~~~~~~~~~~-----------------------------------------v~~sP~~~-~dg~v~~Gs~------  143 (613)
                      ||++ +|.+...+.                                         +.++|.+. ++|.||+|+.      
T Consensus       193 tG~~-~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~  271 (582)
T 1flg_A          193 TGEE-IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWN  271 (582)
T ss_dssp             TCCE-EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSC
T ss_pred             CCCE-EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCccc
Confidence            9999 887654210                                         12345554 3589999884      


Q ss_pred             --------------c----ceEEEEECCCCcEEEEEecCCC--C----CCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          144 --------------K----TSVFLVDVKSGRVVDNYVLDFS--A----STPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       144 --------------~----~~~~~vD~~tG~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                                    +    ++++|||++||+++|.|.....  +    .++|..                .+....+. .
T Consensus       272 ~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l----------------~~~~~~~G-~  334 (582)
T 1flg_A          272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL----------------FDYKAKDG-K  334 (582)
T ss_dssp             GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE----------------EEEECSSS-C
T ss_pred             CcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE----------------EeeecCCC-C
Confidence                          2    6899999999999999986421  0    111111                11000000 0


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .-..|+++..++.||++|++||+++|.+.+..
T Consensus       335 ~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~  366 (582)
T 1flg_A          335 IVKATAHADRNGFFYVVDRSNGKLQNAFPFVD  366 (582)
T ss_dssp             EEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEEEEECCCceEEEEECCCCCEeccccccc
Confidence            01368889999999999999999999988865

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.54  E-value=1.9e-14  Score=151.70  Aligned_cols=120  Identities=16%  Similarity=0.032  Sum_probs=95.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhcC----------CCCcceeEEEEEEeC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIASD----------QHPNIVRWYGVESDQ  539 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~----------~HpnIV~l~g~~~~~  539 (613)
                      +.|.+.+.||+|+||+||++. ..+++.||||++...  ..+.+.+|++++.++.          .||||+++++++...
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~   98 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   98 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence            459999999999999999985 578999999999864  3457888998887761          289999999999865


Q ss_pred             C----EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          540 D----FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       540 ~----~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      +    ..++||||+.|+|.+++....    ...+++..+..++.   .||.|||+. +|+|||||
T Consensus        99 ~~~~~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dik  159 (373)
T 1q8y_A           99 GPNGVHVVMVFEVLGENLLALIKKYE----HRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIK  159 (373)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCS
T ss_pred             CCCCceEEEEEecCCCCHHHHHHHhh----ccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCC
Confidence            4    899999999889999998742    23355555555444   899999998 88777665

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.53  E-value=4.8e-15  Score=155.64  Aligned_cols=117  Identities=20%  Similarity=0.225  Sum_probs=94.3

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE---
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDF---  541 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~---  541 (613)
                      +.+.|...+.||+|+||.||++. ..+|+.||||++...     ..+.+.+|+.++.++ +||||+++++++...+.   
T Consensus        22 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~  100 (353)
T 3coi_A           22 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM-QHENVIGLLDVFTPASSLRN  100 (353)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSGGG
T ss_pred             cCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhc-CCCCcccHhheEeccccccc
Confidence            44569999999999999999984 578999999999752     234688999999888 99999999999987654   


Q ss_pred             ---EEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 ---VYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ---~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                         .|+||||+.|+|.+++..        .+++..+..++.   .||.|||+.+++|||||
T Consensus       101 ~~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlk  153 (353)
T 3coi_A          101 FYDFYLVMPFMQTDLQKIMGL--------KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLK  153 (353)
T ss_dssp             CCCCEEEEECCSEEGGGTTTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             ceeEEEEeccccCCHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence               599999999998877642        245555444443   89999999999887776

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.53  E-value=2.5e-14  Score=149.87  Aligned_cols=118  Identities=18%  Similarity=0.124  Sum_probs=87.8

Q ss_pred             CceEEEeeeEeecCceEEEEEEe-e---CCcEEEEEEeeccc--------------hHHHHHHHHHHHhcCCCCcceeEE
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEGN-Y---EGRSVAVKRLVKTH--------------HDVALKEIQNLIASDQHPNIVRWY  533 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~~-~---~g~~VAVK~l~~~~--------------~~~~~~Ei~~L~~l~~HpnIV~l~  533 (613)
                      .+.|.+.+.||+|+||.||++.. .   ++..+|||++....              ...+.+|+..+..+ +||||++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l-~h~ni~~~~  114 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQL-DYLGIPLFY  114 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTC-SCCCCCCEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccc-cccCcceee
Confidence            35699999999999999999853 3   67889999987632              12356777777666 999999999


Q ss_pred             EEEEe----CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          534 GVESD----QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       534 g~~~~----~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++..    ....|||||||.|+|.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  178 (345)
T 2v62_A          115 GSGLTEFKGRSYRFMVMERLGIDLQKISGQNG------TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIK  178 (345)
T ss_dssp             EEEEEESSSCEEEEEEEECEEEEHHHHCBGGG------BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             cccccccCCCcEEEEEEeccCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcC
Confidence            99998    77899999999669999997532      455555555544   89999999998877776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.52  E-value=4.9e-14  Score=161.12  Aligned_cols=166  Identities=12%  Similarity=0.051  Sum_probs=116.7

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-C-----ceeeccccccCCCCCeEEEecC-----CCCeEEEEecC
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTG-R-----PIYSSYQASFNSNASEFYLDVD-----EDWELYFHSKR  111 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~-----~i~s~~~~~~~~~~~~~~i~~~-----~DG~lY~~~~~  111 (613)
                      .+++.++.||+++.||+|||||+.||+++|+++.+ .     .+.++   +... .+.+|+..+     .||.||++|..
T Consensus       123 ~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~---p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~  198 (677)
T 1kb0_A          123 GVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA---PRVF-KGKVIIGNGGAEYGVRGYITAYDAE  198 (677)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC---CEEE-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             CceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC---cEEE-CCEEEEEecccccCCCCEEEEEECC
Confidence            34457899999999999999999999999999976 2     33332   1111 234666554     27999999999


Q ss_pred             CCceeeecccHHHHh------------------------h--------hCceee-cCCcEEEEeecc-------------
Q 007199          112 FGKMKKLSSSAEEYI------------------------R--------RMPYIS-KDGGVTLGAMKT-------------  145 (613)
Q Consensus       112 ~G~l~~~~~~~~~~v------------------------~--------~sP~~~-~dg~v~~Gs~~~-------------  145 (613)
                      ||++ +|.+.+....                        .        .++.++ +++.||+|+.++             
T Consensus       199 tG~~-~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~g  277 (677)
T 1kb0_A          199 TGER-KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG  277 (677)
T ss_dssp             TCCE-EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred             CCcE-EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCC
Confidence            9999 9988652211                        0        234443 367899998764             


Q ss_pred             ------eEEEEECCCCcEEEEEecCCCC------CCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEE
Q 007199          146 ------SVFLVDVKSGRVVDNYVLDFSA------STPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVL  213 (613)
Q Consensus       146 ------~~~~vD~~tG~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l  213 (613)
                            +++|||++||+++|+|......      .++|..                .+.. .+. .....|+++..++.|
T Consensus       278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l----------------~~~~-~dG-~~~~~l~~~~~~G~l  339 (677)
T 1kb0_A          278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL----------------ADIK-IAG-KPRKVILHAPKNGFF  339 (677)
T ss_dssp             CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE----------------EEEE-ETT-EEEEEEEECCTTSEE
T ss_pred             CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE----------------Eecc-cCC-cEeeEEEEECCCCEE
Confidence                  6999999999999999864310      111110                1000 000 001478999999999


Q ss_pred             EEEeCCCCceEEEEEece
Q 007199          214 QSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       214 ~a~d~~~G~~~Wn~t~~~  231 (613)
                      |++|++||+++|.+.+..
T Consensus       340 ~~lD~~tG~~l~~~~~~~  357 (677)
T 1kb0_A          340 FVLDRTNGKFISAKNFVP  357 (677)
T ss_dssp             EEEETTTCCEEEEEESSC
T ss_pred             EEEECCCCCEeccccccc
Confidence            999999999999998764

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.52  E-value=7.1e-14  Score=143.81  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccch----HHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHH----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~----~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|...+.||+|+||.||++. ..+|+.||||++.....    ..+..|+..+.+..+||||+++++++...+..++|||
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e  104 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAME  104 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEe
Confidence            348999999999999999985 56899999999986322    2344454444455599999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcC-Cceeeccc
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPV-MENTKDIE  596 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~-~iiHrDlK  596 (613)
                      |+.+.+..+....     ...+++..+..++.   .+|.|||.. +++|||||
T Consensus       105 ~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlk  152 (318)
T 2dyl_A          105 LMGTCAEKLKKRM-----QGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVK  152 (318)
T ss_dssp             CCSEEHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ccCCcHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCC
Confidence            9966666666542     23455555544444   899999985 88877766

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.51  E-value=5.8e-14  Score=142.57  Aligned_cols=117  Identities=24%  Similarity=0.159  Sum_probs=86.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--eCCc--EEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--YEGR--SVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--~~g~--~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|++.+.||+|+||+||++..  .+++  .||||+++..      ..+.+.+|++++.++ +||||+++++++...+ .
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL-DHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSS-C
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhC-CCCCcccEEEEEccCC-c
Confidence            4599999999999999999753  2333  6899988752      235788999999888 9999999999998765 8


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++||||++ |+|.+++....     ..+++..+..++.   .+|.|||+.+++|||||
T Consensus        96 ~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik  148 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKHQ-----GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA  148 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHHG-----GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             eeeEecccCCCHHHHHHhcc-----CCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCc
Confidence            89999999 69999998642     2355555555444   89999999988776655

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.51  E-value=2.2e-14  Score=147.62  Aligned_cols=122  Identities=19%  Similarity=0.131  Sum_probs=88.5

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---------hHHHHHHHHHHHhcC---CCCcceeEEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---------HDVALKEIQNLIASD---QHPNIVRWYGV  535 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---------~~~~~~Ei~~L~~l~---~HpnIV~l~g~  535 (613)
                      ..+.+.|.+.+.||+|+||.||++. ..+++.||||++....         ...+.+|++++.++.   +||||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            3445669999999999999999984 5788999999997532         124557888776663   79999999999


Q ss_pred             EEeCCEEEEEecC-CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          536 ESDQDFVYLSLER-CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       536 ~~~~~~~~LV~E~-~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +...+..++|||+ +. |+|.+++....      .+.+..+..++.   .+|.|||+.+++|||||
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  166 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEKG------PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIK  166 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHHTEECCCCS
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence            9999999999999 66 69999998643      345555544443   89999999998777766

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.51  E-value=6.8e-14  Score=160.30  Aligned_cols=172  Identities=15%  Similarity=0.078  Sum_probs=115.5

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-C-----ceeeccccccCCCCCeEEEecC-----CCCeEEEEecC
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTG-R-----PIYSSYQASFNSNASEFYLDVD-----EDWELYFHSKR  111 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~-----~i~s~~~~~~~~~~~~~~i~~~-----~DG~lY~~~~~  111 (613)
                      .+++.++.||+++.||+|||+|+.||+++|++... .     .+.++   +... .+.+|+..+     .||.||++|+.
T Consensus       116 ~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~s---P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~  191 (689)
T 1yiq_A          116 GVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGA---PRVV-NGKVVIGNGGAEFGVRGYVTAYDAE  191 (689)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSC---CEEE-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             ccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCC---cEEE-CCEEEEEeCCCccCCCCEEEEEECC
Confidence            34568899999999999999999999999999875 2     12222   1111 134666543     38999999999


Q ss_pred             CCceeeecccHH-----------HH--------------------hhhCceee-cCCcEEEEeecc--------------
Q 007199          112 FGKMKKLSSSAE-----------EY--------------------IRRMPYIS-KDGGVTLGAMKT--------------  145 (613)
Q Consensus       112 ~G~l~~~~~~~~-----------~~--------------------v~~sP~~~-~dg~v~~Gs~~~--------------  145 (613)
                      ||++ +|.+.+.           .+                    +..++.++ +++.||+|+.++              
T Consensus       192 tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd  270 (689)
T 1yiq_A          192 TGKE-AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD  270 (689)
T ss_dssp             TCCE-EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred             CCcE-EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence            9999 8987531           11                    11245554 368899999876              


Q ss_pred             -----eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCC
Q 007199          146 -----SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDS  220 (613)
Q Consensus       146 -----~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~  220 (613)
                           +++|+|++||+++|+|.......    ++-    .++  ....+.+.. .+. .....|+++..++.||++|++|
T Consensus       271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~----wd~----~~~--~~~~l~d~~-~~G-~~~~~v~~~~~~G~l~~lD~~t  338 (689)
T 1yiq_A          271 NLFLSSIVAVNADTGEYVWHYQTTPGDA----WDY----TAT--QHMILAELP-IDG-KPRKVLMQAPKNGFFYVIDRAT  338 (689)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCC----SCC----CCC--SCEEEEEEE-ETT-EEEEEEEECCTTSEEEEEETTT
T ss_pred             ceeeeeEEEEEccCCceeEeeecCCccc----ccc----cCC--CCcEEEeec-cCC-cEEEEEEEECCCCeEEEEECCC
Confidence                 49999999999999998642100    000    000  000000000 000 0113688999999999999999


Q ss_pred             CceEEEEEece
Q 007199          221 GEVLWNVAYAD  231 (613)
Q Consensus       221 G~~~Wn~t~~~  231 (613)
                      |+++|...+.+
T Consensus       339 G~~l~~~~~~~  349 (689)
T 1yiq_A          339 GELLSAKGIVP  349 (689)
T ss_dssp             CCEEEEEESSC
T ss_pred             CCEeccccccc
Confidence            99999988776

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.49  E-value=1.6e-13  Score=156.34  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=92.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-e---CCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-Y---EGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~---~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|.+.+.||+|+||.||++.. .   .+..||||.++..    ..+.+.+|+.+|.++ +||||+++++++. .+..++
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~~~~~-~~~~~l  467 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHPHIVKLIGVIT-ENPVWI  467 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEC-SSSCEE
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEe-cCceEE
Confidence            5599999999999999999753 2   3467999998753    235788999999888 9999999999984 567899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.++++...     ..++...+..+   ++.||.|||+.+|+|||||
T Consensus       468 v~E~~~~g~L~~~l~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~givHrDik  518 (656)
T 2j0j_A          468 IMELCTLGELRSFLQVRK-----FSLDLASLILYAYQLSTALAYLESKRFVHRDIA  518 (656)
T ss_dssp             EEECCTTCBHHHHHHHTT-----TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEcCCCCcHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            999999 79999998632     23455544443   3489999999998776655

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=8.5e-14  Score=158.97  Aligned_cols=171  Identities=15%  Similarity=0.130  Sum_probs=115.1

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc-----eeeccccccCCCCCeEEEecCC-----CCeEEEEecCCC
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP-----IYSSYQASFNSNASEFYLDVDE-----DWELYFHSKRFG  113 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~-----i~s~~~~~~~~~~~~~~i~~~~-----DG~lY~~~~~~G  113 (613)
                      +++.++.||+++.||.|||+|+.||+++|+++...+     +.++   +... .+.+|+..+.     ||.||++|+.||
T Consensus       113 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG  188 (668)
T 1kv9_A          113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA---PRVV-KGKVIIGNGGAEYGVRGFVSAYDADTG  188 (668)
T ss_dssp             CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC---CEEE-TTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             eEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC---CEEE-CCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence            446789999999999999999999999999987532     2222   1111 2346665442     699999999999


Q ss_pred             ceeeecccHH-----------HH--------------------hhhCceee-cCCcEEEEeecc----------------
Q 007199          114 KMKKLSSSAE-----------EY--------------------IRRMPYIS-KDGGVTLGAMKT----------------  145 (613)
Q Consensus       114 ~l~~~~~~~~-----------~~--------------------v~~sP~~~-~dg~v~~Gs~~~----------------  145 (613)
                      ++ +|.+.+.           .+                    +.++|++. +++.||+|+.++                
T Consensus       189 ~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l  267 (668)
T 1kv9_A          189 KL-AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNL  267 (668)
T ss_dssp             CE-EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cE-EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence            99 9988641           01                    11234554 357899998776                


Q ss_pred             ---eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          146 ---SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       146 ---~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                         +++|||++||+++|++.......    ++-    .++.  ...+.+.. .+. .....|+++..++.||++|++||+
T Consensus       268 ~~~~v~AlD~~tG~~~W~~~~~~~~~----wd~----~~~~--~~~~~d~~-~~G-~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          268 YLSSILAIRPDTGKLAWHYQVTPGDS----WDF----TATQ--QITLAELN-IDG-KPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             TTTEEEEECTTTCCEEEEEESSTTCC----SCC----CCCS--CEEEEEEE-ETT-EEEEEEEECCTTSEEEEEETTTCC
T ss_pred             eeeeEEEEcCCCCceeeEeecCCCcc----ccc----cCCC--CcEEEEec-cCC-cEEEEEEEECCCCEEEEEECCCCC
Confidence               49999999999999998642100    000    0000  00000000 000 001258999999999999999999


Q ss_pred             eEEEEEece
Q 007199          223 VLWNVAYAD  231 (613)
Q Consensus       223 ~~Wn~t~~~  231 (613)
                      ++|...+..
T Consensus       336 ~l~~~~~~~  344 (668)
T 1kv9_A          336 LISAEKFGK  344 (668)
T ss_dssp             EEEEEESSC
T ss_pred             Eeccccccc
Confidence            999988876

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.45  E-value=1.7e-14  Score=163.04  Aligned_cols=120  Identities=18%  Similarity=0.148  Sum_probs=93.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEe------CCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESD------QDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~------~~~  541 (613)
                      ..|.+.+.||+|+||.||++. ..+|+.||||+++..    ..+.+.+|+++|.++ +||||+++++++..      .+.
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L-~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL-NHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHC-CBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhC-CCCCCCceeeeecccccccCCCe
Confidence            348999999999999999974 577999999998753    234788999999888 99999999999765      667


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHH---HHHHHHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQ---DSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .++|||||+ |+|.+++.....   ...+++..   +...++.||.|||+.+++|||||
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~---~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLK  148 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFEN---CCGLKEGPIRTLLSDISSALRYLHENRIIHRDLK  148 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSC---TTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCC
T ss_pred             EEEEEEeCCCCCHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence            899999998 699999986431   11233333   33344489999999999887776

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.44  E-value=3.7e-14  Score=146.11  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||.||++...  ..+|+|.+...     ..+.+.+|+.++.++ +||||+++++++...+..++|||
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~~~--~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~iv~e  109 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGRWH--GEVAIRLIDIERDNEDQLKAFKREVMAYRQT-RHENVVLFMGACMSPPHLAIITS  109 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEEES--SSEEEEECCCCSCCCCCCCCCCTTGGGGTTC-CCTTBCCCCEEEECSSCEEEECB
T ss_pred             HHeEEeeEeccCCceEEEEEEEc--CeEEEEEeecCCCCHHHHHHHHHHHHHHhcC-CCCCEeEEEEEEecCCceEEEee
Confidence            45899999999999999997532  34999998752     234678899888777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++...+     ..+++..+..+   ++.||.|||+.+++|||||
T Consensus       110 ~~~~~~L~~~l~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlk  157 (319)
T 2y4i_B          110 LCKGRTLYSVVRDAK-----IVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLK  157 (319)
T ss_dssp             CCCSEEHHHHTTSSC-----CCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             cccCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence            999 69999997532     23444444443   3389999999998777665

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.44  E-value=8.6e-14  Score=154.87  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             EEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc-----------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          476 VFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH-----------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~-----------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      ...++||+|+||+||++ ...++.+|+|+.....           .+.+.+|+++|.++ +||||+++..++...+..||
T Consensus       339 ~~~~~LG~G~fg~Vy~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRD-SYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALV-KDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             ---------CCEEEEEE-ECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHG-GGGTCCCCCEEEEETTTTEE
T ss_pred             CCCCEEeeCCCEEEEEE-EECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhc-CCCCcCceEEEEEeCCccEE
Confidence            34678999999999997 6678899999865311           23578999999888 99999977777777888899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      |||||+ |+|.++++.          . ..+...+..+|.|||+.+|+||||       ||+|||+.
T Consensus       417 VmE~~~ggsL~~~l~~----------~-~~i~~qi~~aL~~LH~~gIiHrDi-------Kp~NILl~  465 (540)
T 3en9_A          417 MMSYINGKLAKDVIED----------N-LDIAYKIGEIVGKLHKNDVIHNDL-------TTSNFIFD  465 (540)
T ss_dssp             EEECCCSEEHHHHSTT----------C-THHHHHHHHHHHHHHHTTEECTTC-------CTTSEEES
T ss_pred             EEECCCCCCHHHHHHH----------H-HHHHHHHHHHHHHHHHCcCccCCC-------CHHHEEEC
Confidence            999999 699999863          1 134555558999999999876665       67777763

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.39  E-value=5.9e-13  Score=135.79  Aligned_cols=114  Identities=14%  Similarity=-0.007  Sum_probs=84.1

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc---------------------chHHHHHHHHHHHhcCCCCcceeE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT---------------------HHDVALKEIQNLIASDQHPNIVRW  532 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~---------------------~~~~~~~Ei~~L~~l~~HpnIV~l  532 (613)
                      .|.+.+.||+|+||.||++...+|+.||||.++..                     ....+.+|+++|.++ +|   +++
T Consensus        91 ~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l-~~---~~v  166 (282)
T 1zar_A           91 VDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL-QG---LAV  166 (282)
T ss_dssp             CSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT-TT---SSS
T ss_pred             EEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc-cC---CCc
Confidence            36778999999999999986677999999999642                     134688999999888 54   455


Q ss_pred             EEEEEeCCEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          533 YGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       533 ~g~~~~~~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      .+++.. +..|+|||||+ |+|.+ +..         .....+...++.+|.+||+.+|+|||||       |+|||+
T Consensus       167 ~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~giiHrDlk-------p~NILl  226 (282)
T 1zar_A          167 PKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHRGIVHGDLS-------QYNVLV  226 (282)
T ss_dssp             CCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHTTEECSCCS-------TTSEEE
T ss_pred             CeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHCCCEeCCCC-------HHHEEE
Confidence            554433 45699999999 49987 421         1223456666699999999998776665       666665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.33  E-value=7.4e-12  Score=128.33  Aligned_cols=149  Identities=21%  Similarity=0.370  Sum_probs=113.3

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      +.++.+++++.+|.|+++|.. |+.+|++..+.++..+..  .+.+ ..+++ ++.++.||++|+. |+. .|.+..+..
T Consensus       105 ~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~--~~~~-g~l~v-gt~~~~l~~~d~~-g~~-~~~~~~~~~  177 (330)
T 3hxj_A          105 IFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPI--VSED-GTIYV-GSNDNYLYAINPD-GTE-KWRFKTNDA  177 (330)
T ss_dssp             EETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE--ECTT-SCEEE-ECTTSEEEEECTT-SCE-EEEEECSSC
T ss_pred             EECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeE--EcCC-CEEEE-EcCCCEEEEECCC-CCE-eEEEecCCC
Confidence            358999999999999999999 999999987766544411  1212 23555 5558999999999 888 888887776


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      ...+|++..||.+|+|+  +.++++| .+|+.+|++........+++                 .+        .++.||
T Consensus       178 ~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~-----------------~~--------~~g~l~  229 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA-----------------IS--------EDGTIY  229 (330)
T ss_dssp             CCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCE-----------------EC--------TTSCEE
T ss_pred             ceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceE-----------------EC--------CCCeEE
Confidence            77788887789999999  8999999 89999999875542221111                 00        245899


Q ss_pred             EEeeeeEEEEEeCCCCceEEEEEec
Q 007199          206 IMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      +|..++.|+++|+ +|+..|.++..
T Consensus       230 v~t~~~gl~~~~~-~g~~~~~~~~~  253 (330)
T 3hxj_A          230 VTSLDGHLYAINP-DGTEKWRFKTG  253 (330)
T ss_dssp             EEETTTEEEEECT-TSCEEEEEECS
T ss_pred             EEcCCCeEEEECC-CCCEeEEeeCC
Confidence            9999999999985 78999988754

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.33  E-value=3.4e-12  Score=128.25  Aligned_cols=118  Identities=19%  Similarity=0.101  Sum_probs=83.5

Q ss_pred             eEEEeeeEeecCceEEEEEEe-eCCcE--EEEEEeeccc---------------------------hHHHHHHHHHHHhc
Q 007199          474 LVVFNKEIAKGSNGTVVLEGN-YEGRS--VAVKRLVKTH---------------------------HDVALKEIQNLIAS  523 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~-~~g~~--VAVK~l~~~~---------------------------~~~~~~Ei~~L~~l  523 (613)
                      .|.+.+.||+|+||.||++.. .+|+.  ||||+++...                           ...+.+|+++|.++
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            378889999999999999864 78999  9999875421                           12578999999888


Q ss_pred             CCCCcc--eeEEEEEEeCCEEEEEecCCC--c----cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHh-cCCceeec
Q 007199          524 DQHPNI--VRWYGVESDQDFVYLSLERCT--C----SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLL-PVMENTKD  594 (613)
Q Consensus       524 ~~HpnI--V~l~g~~~~~~~~~LV~E~~~--G----sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh-~~~iiHrD  594 (613)
                       .|+++  +.++.+    +..+|||||++  |    +|.+++..      ........+...++.++.+|| ..+|+|||
T Consensus       128 -~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~givHrD  196 (258)
T 1zth_A          128 -KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEAELVHAD  196 (258)
T ss_dssp             -HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTSCEECSS
T ss_pred             -HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHCCEEeCC
Confidence             77653  444432    35689999995  3    67666432      112234455566669999999 88886655


Q ss_pred             cceecCCCcCcceee
Q 007199          595 IELWKANGHPSAQLL  609 (613)
Q Consensus       595 lKllh~dg~PsniLl  609 (613)
                      |       +|+|||+
T Consensus       197 l-------kp~NILl  204 (258)
T 1zth_A          197 L-------SEYNIMY  204 (258)
T ss_dssp             C-------STTSEEE
T ss_pred             C-------CHHHEEE
Confidence            4       5777776

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.32  E-value=1.8e-11  Score=125.39  Aligned_cols=148  Identities=18%  Similarity=0.262  Sum_probs=115.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .++.+++||.+|.|+++|.. |+.+|++..+.+...+..  .+.+ ..+|+..   +.||++| .+|+. .|.+......
T Consensus       146 ~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~--~d~~-g~l~v~t---~~l~~~d-~~g~~-~~~~~~~~~~  216 (330)
T 3hxj_A          146 EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS--IGKD-GTIYFGS---DKVYAIN-PDGTE-KWNFYAGYWT  216 (330)
T ss_dssp             TTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE--ECTT-CCEEEES---SSEEEEC-TTSCE-EEEECCSSCC
T ss_pred             CCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE--EcCC-CEEEEEe---CEEEEEC-CCCcE-EEEEccCCcc
Confidence            47889999999999999999 999999987655444311  1222 2466655   9999999 78888 8888877656


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEE
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYI  206 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  206 (613)
                      ..+|++..||.+|+|+.++.++++|+ +|+.+|.+.......+.++.+                         .++.||+
T Consensus       217 ~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~-------------------------~~g~l~v  270 (330)
T 3hxj_A          217 VTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG-------------------------NTDTIYF  270 (330)
T ss_dssp             CSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC-------------------------TTSCEEE
T ss_pred             eeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc-------------------------CCCeEEE
Confidence            67888888899999999999999985 799999998654432222110                         1468999


Q ss_pred             EeeeeEEEEEeCCCCceEEEEEec
Q 007199          207 MRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       207 gr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      |..++.|+++|+ +|+..|.+...
T Consensus       271 ~t~~ggl~~~d~-~g~~~~~~~~~  293 (330)
T 3hxj_A          271 GSYDGHLYAINP-DGTEKWNFETG  293 (330)
T ss_dssp             ECTTCEEEEECT-TSCEEEEEECS
T ss_pred             ecCCCCEEEECC-CCcEEEEEEcC
Confidence            999999999997 79999998764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.8e-12  Score=134.83  Aligned_cols=161  Identities=11%  Similarity=-0.011  Sum_probs=105.1

Q ss_pred             CCCEEEEE--ecCCcEEEEeCCCCeeeEEeeCCCceeeccc----cccCC-----CCCeEEEecCCCCeEEEEecCCCce
Q 007199           47 EPDVALVA--ALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQ----ASFNS-----NASEFYLDVDEDWELYFHSKRFGKM  115 (613)
Q Consensus        47 ~~~~v~v~--t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~----~~~~~-----~~~~~~i~~~~DG~lY~~~~~~G~l  115 (613)
                      .++.++++  +.||.|||+|+.+|..+|.+.....+.+++.    .+.-.     ..+..++.++.||.||++|..+|++
T Consensus        54 ~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           54 ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            35567766  7899999999999999999986543322210    11110     0235666677799999999999999


Q ss_pred             eeecccHHHHh-------hhCcee------ecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCcccc
Q 007199          116 KKLSSSAEEYI-------RRMPYI------SKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVP  182 (613)
Q Consensus       116 ~~~~~~~~~~v-------~~sP~~------~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (613)
                       +|.+++....       ..+|..      ..++.||+|+.+..+++.+ +||+ +|++.......  .....       
T Consensus       134 -~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~--~~~~~-------  201 (339)
T 2be1_A          134 -ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQ--NVLDV-------  201 (339)
T ss_dssp             -EEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEEC--CTTTH-------
T ss_pred             -EEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccc--ccccc-------
Confidence             9999987431       123432      2257899999999999999 7898 89886432211  00000       


Q ss_pred             CCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEE-EE
Q 007199          183 VDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLW-NV  227 (613)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~W-n~  227 (613)
                          +......    ...++.+|++..|+.|+|+|+++|.++| +.
T Consensus       202 ----~~~~~~~----~s~Dg~~~~~~~dg~v~A~d~~~G~~~W~~~  239 (339)
T 2be1_A          202 ----PLALQNT----FSKDGMCIAPFRDKSLLASDLDFRIARWVSP  239 (339)
T ss_dssp             ----HHHTTCS----SCSSSCCEEEETTTEEEEECSTTCCEEEECC
T ss_pred             ----ccccccc----cccCCcEEEECCCCEEEEEECCCCcEEEEee
Confidence                0000000    0024577899999999999999999999 53

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.26  E-value=1.3e-11  Score=132.72  Aligned_cols=123  Identities=11%  Similarity=-0.031  Sum_probs=79.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCC-Ccc---------------
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQH-PNI---------------  529 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~H-pnI---------------  529 (613)
                      ..|...++||+|+||+||++. ..+|+.||||++..      ...+.+.+|+.++..+ +| +|.               
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l-~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLL-RGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGS-TTCCSHHHHHHHTCBCCCCEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhh-ccCCCHHHHHHhcccccchhh
Confidence            348889999999999999985 77899999999883      2245788999877655 66 211               


Q ss_pred             ------eeEEEEEEe-----CCEEEEEecCCCccHHHHHHHhcCC-CccccCCHHHHH---HHHHHHHHHHhcCCceeec
Q 007199          530 ------VRWYGVESD-----QDFVYLSLERCTCSLNDLIYVLSGS-FEEQLNAKEQDS---NLLNEVRIRLLPVMENTKD  594 (613)
Q Consensus       530 ------V~l~g~~~~-----~~~~~LV~E~~~GsL~~~L~~~~~~-~~~~~~~~~~~~---~~~~~~l~~Lh~~~iiHrD  594 (613)
                            ..+..++..     ....+++|+++.|+|.++++..... .....++.....   ..++.||.|||+.+|+|||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrD  236 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  236 (413)
T ss_dssp             EECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             cccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                  111111121     2357889999889999998643100 011222222222   3333899999999988777


Q ss_pred             cc
Q 007199          595 IE  596 (613)
Q Consensus       595 lK  596 (613)
                      ||
T Consensus       237 iK  238 (413)
T 3dzo_A          237 LR  238 (413)
T ss_dssp             CC
T ss_pred             cc
Confidence            66

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.24  E-value=3.4e-11  Score=122.17  Aligned_cols=155  Identities=12%  Similarity=0.143  Sum_probs=106.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc--eeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP--IYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~--i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .++++++++.|++|+++|++||+++|++..+..  ..+.   ....+. .+++ . .++.+|++|+ +|++ .|.++.+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~---~~~pdG-~ilv-s-~~~~V~~~d~-~G~~-~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV---AATKAG-EILF-S-YSKGAKMITR-DGRE-LWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE---EECTTS-CEEE-E-CBSEEEEECT-TSCE-EEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe---EECCCC-CEEE-e-CCCCEEEECC-CCCE-EEEEcCCC
Confidence            468899999999999999999999999998652  2222   112222 3555 4 4889999999 8999 99998852


Q ss_pred             --HhhhCceeecCCcEEEEe-e-cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          125 --YIRRMPYISKDGGVTLGA-M-KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       125 --~v~~sP~~~~dg~v~~Gs-~-~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                        .+.+ ..+..||.++++. . ...++++|+ +|+++|++...........                  .+..+.....
T Consensus        76 ~~~~~~-~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~------------------~~~~v~~~~~  135 (276)
T 3no2_A           76 GCEMQT-ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHA------------------QFRQINKNKK  135 (276)
T ss_dssp             TCEEEE-EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGG------------------SCSCCEECTT
T ss_pred             Cccccc-cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccc------------------cccCceECCC
Confidence              2333 3344488777764 4 688999997 8999999986543210000                  0000000001


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      .+.|+....++.|+++|++ |+++|++...
T Consensus       136 G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~  164 (276)
T 3no2_A          136 GNYLVPLFATSEVREIAPN-GQLLNSVKLS  164 (276)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEEECS
T ss_pred             CCEEEEecCCCEEEEECCC-CCEEEEEECC
Confidence            3356666778999999998 9999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.23  E-value=4.6e-11  Score=121.23  Aligned_cols=151  Identities=11%  Similarity=0.084  Sum_probs=101.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC--ceeeccccccCCCCCeEEEecCC-CCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR--PIYSSYQASFNSNASEFYLDVDE-DWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~--~i~s~~~~~~~~~~~~~~i~~~~-DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .++.+|+ +.++.|+++|+ +|+++|+++++.  .+.+.  .... +. .+++..+. ++.++++|+ +|++ .|.+.+.
T Consensus        46 pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~--~~~~-dG-~~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~  117 (276)
T 3no2_A           46 KAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA--RILP-DG-NALVAWCGHPSTILEVNM-KGEV-LSKTEFE  117 (276)
T ss_dssp             TTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE--EECT-TS-CEEEEEESTTEEEEEECT-TSCE-EEEEEEC
T ss_pred             CCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc--EECC-CC-CEEEEecCCCCEEEEEeC-CCCE-EEEEecc
Confidence            4566676 67899999999 999999999853  44433  1122 22 35555554 899999997 6888 7777653


Q ss_pred             HHhhh---Cc---eeecCCcEE-EEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          124 EYIRR---MP---YISKDGGVT-LGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       124 ~~v~~---sP---~~~~dg~v~-~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .-+..   .|   ....||.++ +.+.++.++++|++ |+++|++.......+.++                        
T Consensus       118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~------------------------  172 (276)
T 3no2_A          118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAF------------------------  172 (276)
T ss_dssp             CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEE------------------------
T ss_pred             CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeE------------------------
Confidence            22111   11   233466555 56778999999998 999999987532211110                        


Q ss_pred             cccccc-EEEEEeeeeEEEEEeCCCCceEEEEEecee
Q 007199          197 LKRIRQ-LVYIMRTDYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       197 ~~~~~~-~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                        ..++ .++.+..+++|+++|++||+++|.+.-.+.
T Consensus       173 --~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~  207 (276)
T 3no2_A          173 --LDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI  207 (276)
T ss_dssp             --CTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred             --cCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence              0133 444455566899999999999999986544

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.14  E-value=9.9e-12  Score=131.44  Aligned_cols=118  Identities=11%  Similarity=0.069  Sum_probs=79.1

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----------------chH--------HHHHHHHHHHhcCCCCcc
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----------------HHD--------VALKEIQNLIASDQHPNI  529 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----------------~~~--------~~~~Ei~~L~~l~~HpnI  529 (613)
                      |.+...||+|+||.||+|...+|+.||||+++..                 ...        ...+|...|.++ .+.++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL-~~~gv  175 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKAL-YEEGF  175 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            8899999999999999987788999999987631                 000        124566666666 44333


Q ss_pred             eeEEEEEEeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc----eecCCCcC
Q 007199          530 VRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE----LWKANGHP  604 (613)
Q Consensus       530 V~l~g~~~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK----llh~dg~P  604 (613)
                      ....-+....  .+|||||++| +|.++..         ......+...++.+|.+||+.++||||||    |++.+|.+
T Consensus       176 ~vp~p~~~~~--~~LVME~i~G~~L~~l~~---------~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          176 PVPEPIAQSR--HTIVMSLVDALPMRQVSS---------VPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             SCCCEEEEET--TEEEEECCSCEEGGGCCC---------CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECS
T ss_pred             CCCeeeeccC--ceEEEEecCCccHhhhcc---------cHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCc
Confidence            2221112222  2699999996 7754321         11223445556689999999999998888    77777643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.79  E-value=2.4e-08  Score=102.51  Aligned_cols=158  Identities=12%  Similarity=0.113  Sum_probs=111.8

Q ss_pred             CCCCEEEEEec-------CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee
Q 007199           46 PEPDVALVAAL-------DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL  118 (613)
Q Consensus        46 ~~~~~v~v~t~-------dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~  118 (613)
                      ..++.+|+++.       +|.|+.+|..+|+.+|++..+....+-   ....++..+|+....|+.|+.+|..+|++ .+
T Consensus        50 ~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~  125 (353)
T 3vgz_A           50 QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGA---TINNTTQTLWFGNTVNSAVTAIDAKTGEV-KG  125 (353)
T ss_dssp             TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSE---EEETTTTEEEEEETTTTEEEEEETTTCCE-EE
T ss_pred             CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceE---EECCCCCEEEEEecCCCEEEEEeCCCCee-EE
Confidence            36678998885       568999999999999999876543221   12333345888888899999999999988 55


Q ss_pred             cccHHHHhh---------hCceeecCCc-EEEEe--ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCc
Q 007199          119 SSSAEEYIR---------RMPYISKDGG-VTLGA--MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGY  186 (613)
Q Consensus       119 ~~~~~~~v~---------~sP~~~~dg~-v~~Gs--~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (613)
                      .+..+....         ....++.||. +|++.  .++.++.+|+.+|++++.+...+......               
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~---------------  190 (353)
T 3vgz_A          126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL---------------  190 (353)
T ss_dssp             EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC---------------
T ss_pred             EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE---------------
Confidence            555532110         1234665664 88877  37889999999999999987322111000               


Q ss_pred             ccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          187 EELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       187 ~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                        .++|       ....+|++..++.|+.+|..+|+..|.+....
T Consensus       191 --~~s~-------dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          191 --ALDS-------EGKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             --EEET-------TTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             --EECC-------CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence              1111       13479999999999999999999999988743

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.52  E-value=1.3e-06  Score=88.55  Aligned_cols=151  Identities=13%  Similarity=0.056  Sum_probs=106.8

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCC---ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGR---PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~---~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      +.+++++.||+|+.+|..+|+.++++..+.   ....-   ....+...+|+....++.|+.+|..+|+. ...+..+. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVP---MVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCE---EECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccce---EEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCc
Confidence            468889999999999999999999998655   22221   12333346788888899999999999987 44343321 


Q ss_pred             -----HhhhCceeecCC-cEEEEe------------ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCc
Q 007199          125 -----YIRRMPYISKDG-GVTLGA------------MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGY  186 (613)
Q Consensus       125 -----~v~~sP~~~~dg-~v~~Gs------------~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (613)
                           .+ ....++.|| .+|+++            .++.++.+|+.+|+.++.+..+.... .         .      
T Consensus        78 ~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~---------~------  140 (337)
T 1pby_B           78 EERVKSL-FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT-M---------L------  140 (337)
T ss_dssp             TEEEECT-TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC-C---------E------
T ss_pred             ccccccc-cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc-e---------e------
Confidence                 22 245567677 688886            46999999999999999887643211 0         0      


Q ss_pred             ccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          187 EELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       187 ~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                        .++|.       ...+|++  +..|+.+|..+|+..+.+....
T Consensus       141 --~~s~d-------g~~l~~~--~~~i~~~d~~~~~~~~~~~~~~  174 (337)
T 1pby_B          141 --AWARD-------GSKLYGL--GRDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             --EECTT-------SSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred             --EECCC-------CCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence              11111       2357777  6889999999999887776554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.47  E-value=3.7e-06  Score=85.98  Aligned_cols=163  Identities=10%  Similarity=0.131  Sum_probs=109.6

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCcee-------eccccccCCCCCeEEEec-CCCCeEEEEecCCCceee
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIY-------SSYQASFNSNASEFYLDV-DEDWELYFHSKRFGKMKK  117 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~-------s~~~~~~~~~~~~~~i~~-~~DG~lY~~~~~~G~l~~  117 (613)
                      .++.+|+++. +|.|+.+|..+|+++|++..+....       .........+...+|+.. ..|+.+|.+|..+|+. .
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~  177 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-K  177 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-E
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-E
Confidence            4566777655 6999999999999999998754221       000011233334577776 5689999999999888 5


Q ss_pred             eccc-HHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccc
Q 007199          118 LSSS-AEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVG  195 (613)
Q Consensus       118 ~~~~-~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (613)
                      +.+. ....+ ....++.|| .+|+++.++.++.+|..+|++++.+..+.... ....     ..       -.++|   
T Consensus       178 ~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~-----~~-------~~~s~---  240 (353)
T 3vgz_A          178 TAIQNTGKMS-TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK-EHFF-----IN-------ISLDT---  240 (353)
T ss_dssp             EEECCCCTTC-CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS-CCCE-----EE-------EEEET---
T ss_pred             EEecCCCCcc-ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC-Cccc-----ce-------EEECC---
Confidence            5554 22222 345566676 48999999999999999999999987643210 0000     00       01111   


Q ss_pred             cccccccEEEEEeee-eEEEEEeCCCCceEEEEEece
Q 007199          196 NLKRIRQLVYIMRTD-YVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       196 ~~~~~~~~v~igr~d-~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                          ..+.+|++..+ ..|+.+|..+|+..+.+...+
T Consensus       241 ----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          241 ----ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             ----TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             ----CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence                13468887765 899999999999999888643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.43  E-value=4.3e-06  Score=86.25  Aligned_cols=182  Identities=11%  Similarity=-0.023  Sum_probs=114.1

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCce---eeccccccCCCCCeEEEecC-CCCeEEEEecCCCceeeeccc
Q 007199           47 EPDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRPI---YSSYQASFNSNASEFYLDVD-EDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~i---~s~~~~~~~~~~~~~~i~~~-~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      .++.+||++ .++.|+.+|..|+++.++++.+...   ..+.....  +...+|+... .++.++.+|..+|++ ...+.
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~  169 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VDELT  169 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EEEEE
Confidence            467999999 8999999999999999999876510   01100111  2346788776 589999999999987 44444


Q ss_pred             HHHHhhhCceeecCCcEEEEeec-----------ceEEEEECCCCcEEEEEecCCC-CCCCCCcC-CCCCccccC-----
Q 007199          122 AEEYIRRMPYISKDGGVTLGAMK-----------TSVFLVDVKSGRVVDNYVLDFS-ASTPGFQS-DENKHVVPV-----  183 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~v~~Gs~~-----------~~~~~vD~~tG~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~-----  183 (613)
                      .+... ..-+++.||.+|+++..           +.++.||++||+++..+..... .+..-... ++....+.+     
T Consensus       170 ~g~~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~  248 (328)
T 3dsm_A          170 IGIQP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWR  248 (328)
T ss_dssp             CSSCB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEE
T ss_pred             cCCCc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEE
Confidence            33211 23345668999998764           5899999999999988875321 11000111 111100100     


Q ss_pred             ----CCcc---cccc-----cc--cccccccccEEEEEe-----eeeEEEEEeCCCCceEEEEEeceeeee
Q 007199          184 ----DGYE---ELVE-----SG--VGNLKRIRQLVYIMR-----TDYVLQSTSQDSGEVLWNVAYADFKAE  235 (613)
Q Consensus       184 ----~~~~---~~~~-----~~--~~~~~~~~~~v~igr-----~d~~l~a~d~~~G~~~Wn~t~~~~~a~  235 (613)
                          .+..   ..+.     |.  ..+|  .++.||+..     .++.|+.+|++ |+.+|++.++..-..
T Consensus       249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp--~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~  316 (328)
T 3dsm_A          249 MPVEADRVPVRPFLEFRDTKYYGLTVNP--NNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGA  316 (328)
T ss_dssp             EETTCSSCCSSCSBCCCSSCEEEEEECT--TTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEE
T ss_pred             EECCCCceeeeeeecCCCCceEEEEEcC--CCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcce
Confidence                1100   0000     10  0111  256899985     67899999998 999999998876444

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.42  E-value=1.6e-06  Score=86.26  Aligned_cols=104  Identities=11%  Similarity=-0.052  Sum_probs=79.3

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCc
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~G  551 (613)
                      |.....++.|+.+.||+.. ..++.+++|+...   .....+.+|+++|..+-.|..+.++++++...+..|+||||++|
T Consensus        16 ~~~~~~~~g~s~~~v~~~~-~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G   94 (263)
T 3tm0_A           16 YRCVKDTEGMSPAKVYKLV-GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADG   94 (263)
T ss_dssp             SEEEECCSCCSSSEEEEEE-CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSS
T ss_pred             ceeEeeccCCCCCeEEEEE-CCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCC
Confidence            6777888889999999864 3468999999875   33457899999998885578889999999999999999999998


Q ss_pred             -cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhc
Q 007199          552 -SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLP  587 (613)
Q Consensus       552 -sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~  587 (613)
                       +|.+.+..        ......+...+..++..||+
T Consensus        95 ~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           95 VLCSEEYED--------EQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEHHHHCCT--------TTCHHHHHHHHHHHHHHHHH
T ss_pred             eehhhccCC--------cccHHHHHHHHHHHHHHHhC
Confidence             88765311        11223445555578888887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.40  E-value=4.7e-06  Score=85.95  Aligned_cols=150  Identities=9%  Similarity=0.088  Sum_probs=105.2

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .++.+|+++. +|.|+.+|..||++++++..+.....-   ....+. .+|+....++.|+.+|..++++ ...+.++. 
T Consensus        52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i---~~~~~g-~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~  126 (328)
T 3dsm_A           52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYI---HFLSDE-KAYVTQIWDYRIFIINPKTYEI-TGYIECPDM  126 (328)
T ss_dssp             ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEE---EEEETT-EEEEEEBSCSEEEEEETTTTEE-EEEEECTTC
T ss_pred             ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEE---EEeCCC-eEEEEECCCCeEEEEECCCCeE-EEEEEcCCc
Confidence            5678888877 589999999999999999643322111   121222 5788776799999999999988 44444443 


Q ss_pred             -----HhhhCceeecCCcEEEEee--cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccc
Q 007199          125 -----YIRRMPYISKDGGVTLGAM--KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNL  197 (613)
Q Consensus       125 -----~v~~sP~~~~dg~v~~Gs~--~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (613)
                           .. ..-++ .++.+|++..  +++++.+|++||+++++...+....  .        .        .++      
T Consensus       127 ~~~~~~p-~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~--~--------i--------~~~------  180 (328)
T 3dsm_A          127 DMESGST-EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT--S--------L--------VMD------  180 (328)
T ss_dssp             CTTTCBC-CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC--C--------C--------EEC------
T ss_pred             cccCCCc-ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc--c--------e--------EEc------
Confidence                 11 12234 4889999874  7899999999999999987643211  0        0        111      


Q ss_pred             cccccEEEEEeee-----------eEEEEEeCCCCceEEEEEe
Q 007199          198 KRIRQLVYIMRTD-----------YVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       198 ~~~~~~v~igr~d-----------~~l~a~d~~~G~~~Wn~t~  229 (613)
                        .++.+|++...           ..|+.+|++++++...+.+
T Consensus       181 --~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          181 --KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF  221 (328)
T ss_dssp             --TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred             --CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence              24578887764           5899999999998877765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.29  E-value=8.1e-06  Score=85.07  Aligned_cols=155  Identities=12%  Similarity=0.079  Sum_probs=109.3

Q ss_pred             CCCEEEE-EecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALV-AALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v-~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..+|+ ++.||+|+.+|..+|+.++++..+..+.+-   ....+...+++.+..|+.++.+|..+|+. ...+.....
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~---~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~  117 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV---AVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKTGKS  117 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE---EECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSS
T ss_pred             CCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce---EECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeCCCC
Confidence            4556654 458999999999999999999887765443   22334445778888899999999999887 444444333


Q ss_pred             hhhCceeecCCc-E-EEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          126 IRRMPYISKDGG-V-TLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       126 v~~sP~~~~dg~-v-~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      + .+..++.||. + ++++.++.++.+|..+|+.++.+..+....           .       -.++|       .+..
T Consensus       118 ~-~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----------~-------~~~~~-------dg~~  171 (391)
T 1l0q_A          118 P-LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK-----------G-------IAVTP-------DGTK  171 (391)
T ss_dssp             E-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE-----------E-------EEECT-------TSSE
T ss_pred             c-ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcc-----------e-------EEECC-------CCCE
Confidence            3 3345666775 5 468889999999999999999987543211           0       01111       1235


Q ss_pred             EE-EEeeeeEEEEEeCCCCceEEEEEece
Q 007199          204 VY-IMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       204 v~-igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      +| .+..|+.|+.+|.++++....+....
T Consensus       172 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  200 (391)
T 1l0q_A          172 VYVANFDSMSISVIDTVTNSVIDTVKVEA  200 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence            65 46778999999999998887776543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.26  E-value=7.3e-06  Score=85.41  Aligned_cols=151  Identities=11%  Similarity=0.111  Sum_probs=107.3

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhC
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRM  129 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~s  129 (613)
                      +++.++.||+|+..|..+|+.++.+..+..+.+-   ....+...+|+.++.||.|+.+|..+|++ ...+..+..+ .+
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~v-~~   78 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGA---VISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGSSP-QG   78 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE---EECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSE-EE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCCcceE---EECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCCCc-cc
Confidence            4566778999999999999999999876655432   22333345677887899999999999988 6666555533 23


Q ss_pred             ceeecCCc-EEE-EeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE-EE
Q 007199          130 PYISKDGG-VTL-GAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV-YI  206 (613)
Q Consensus       130 P~~~~dg~-v~~-Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~i  206 (613)
                      .+++.||. +|+ |+.+++++.+|+.+|+.++.+.......           .+       .+++       ....+ +.
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-----------~~-------~~s~-------dg~~l~~~  133 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL-----------GL-------ALSP-------DGKKLYVT  133 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-----------EE-------EECT-------TSSEEEEE
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc-----------eE-------EECC-------CCCEEEEE
Confidence            44565665 655 5567999999999999999887543211           00       1111       12356 45


Q ss_pred             EeeeeEEEEEeCCCCceEEEEEec
Q 007199          207 MRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       207 gr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      +..|+.|+.+|..+|+..+.+...
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC
Confidence            667999999999999998887764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.22  E-value=1.5e-05  Score=79.40  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=113.5

Q ss_pred             CCCEEEEEecC-C--cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAALD-G--TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~d-G--~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .++.+|++|-+ |  .|+.+|..||+++=++..++..+..-   ...+++.+|+..-.++.++.+|+.++++ .-.+..+
T Consensus        51 ~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeG---it~~g~~ly~ltw~~~~v~v~D~~t~~~-~~ti~~~  126 (262)
T 3nol_A           51 RNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEG---ISDWKDKIVGLTWKNGLGFVWNIRNLRQ-VRSFNYD  126 (262)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEE---EEEETTEEEEEESSSSEEEEEETTTCCE-EEEEECS
T ss_pred             ECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeE---EEEeCCEEEEEEeeCCEEEEEECccCcE-EEEEECC
Confidence            46899999865 4  89999999999999998776554321   1112347888888899999999999887 4444433


Q ss_pred             HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          124 EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       124 ~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .  +.--+..+++.+|+...++.++.+|+.|++++.+...+..-  .|+           ...+|+        .+.++.
T Consensus       127 ~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g--~~~-----------~~lNEL--------e~~~G~  183 (262)
T 3nol_A          127 G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG--EEL-----------PELNEL--------EWVDGE  183 (262)
T ss_dssp             S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT--EEC-----------CCEEEE--------EEETTE
T ss_pred             C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC--ccc-----------ccccee--------EEECCE
Confidence            2  33333443557888777788999999999999988764210  010           111111        123568


Q ss_pred             EEEEee-eeEEEEEeCCCCceEEEEEeceee
Q 007199          204 VYIMRT-DYVLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       204 v~igr~-d~~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                      ||+..+ +..|+.+|++||++.=.+.++.-.
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~  214 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGIL  214 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGG
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCc
Confidence            999886 678999999999999999887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.20  E-value=1.7e-05  Score=79.03  Aligned_cols=159  Identities=10%  Similarity=0.054  Sum_probs=112.5

Q ss_pred             CCCEEEEEecC-CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALD-GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~d-G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.+|++|-+ |.|+.+|..||+++-++ .++..+..   ....+++.+|+..-.++.++.+|++++++ .-.++.+. 
T Consensus        63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fge---Git~~g~~Ly~ltw~~~~v~V~D~~Tl~~-~~ti~~~~-  136 (268)
T 3nok_A           63 HQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAE---GLASDGERLYQLTWTEGLLFTWSGMPPQR-ERTTRYSG-  136 (268)
T ss_dssp             ETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEE---EEEECSSCEEEEESSSCEEEEEETTTTEE-EEEEECSS-
T ss_pred             ECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCccee---EEEEeCCEEEEEEccCCEEEEEECCcCcE-EEEEeCCC-
Confidence            56899998866 78999999999999999 76654432   11222346888888999999999999887 33333321 


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                       +..-+..+++.+|+...++.++.||++|++++.+...+..-  .|+           ...+|+        .+.++.||
T Consensus       137 -eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g--~~v-----------~~lNeL--------e~~dG~ly  194 (268)
T 3nok_A          137 -EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG--QPV-----------ELINEL--------ECANGVIY  194 (268)
T ss_dssp             -CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETT--EEC-----------CCEEEE--------EEETTEEE
T ss_pred             -ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC--ccc-----------cccccc--------EEeCCEEE
Confidence             12222333557888888999999999999999998764310  000           000111        12366899


Q ss_pred             EEee-eeEEEEEeCCCCceEEEEEeceee
Q 007199          206 IMRT-DYVLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       206 igr~-d~~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                      +..+ +..|..+|+++|++.=.+.++.-.
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~  223 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALT  223 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHH
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCc
Confidence            9886 578999999999999999888654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.16  E-value=2.5e-05  Score=79.52  Aligned_cols=155  Identities=11%  Similarity=0.084  Sum_probs=100.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC--ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR--PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~--~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .+.++++++.||+|+.+|..+|+.++++..+.  .....   ....+...+|+....++.||.+|..+|+. ...+..+.
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~---~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~~~~   85 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA---MMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLSS   85 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEE---EECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESCC
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCcee---EECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEEccc
Confidence            34455667789999999999999999998654  22221   12333345777778899999999999887 44444321


Q ss_pred             H------hhhCceeecCC-cEEEEeec------------ceEEEEECCCCcEEE---EEecCCCCCCCCCcCCCCCcccc
Q 007199          125 Y------IRRMPYISKDG-GVTLGAMK------------TSVFLVDVKSGRVVD---NYVLDFSASTPGFQSDENKHVVP  182 (613)
Q Consensus       125 ~------v~~sP~~~~dg-~v~~Gs~~------------~~~~~vD~~tG~~~~---~~~~~~~~~~~~~~~~~~~~~~~  182 (613)
                      .      .-....++.|| .+|+++.+            ++++.+|+.||+...   .+.......           .+ 
T Consensus        86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----------~~-  153 (349)
T 1jmx_B           86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY-----------LM-  153 (349)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCC-----------CE-
T ss_pred             ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccc-----------ce-
Confidence            1      01334566677 58888866            899999999976543   332211100           00 


Q ss_pred             CCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEeceee
Q 007199          183 VDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                            .++        .++.+|++..+  |+.+|.++|+..+.+....+.
T Consensus       154 ------~~s--------~dg~l~~~~~~--i~~~d~~~~~~~~~~~~~~~~  188 (349)
T 1jmx_B          154 ------RAA--------DDGSLYVAGPD--IYKMDVKTGKYTVALPLRNWN  188 (349)
T ss_dssp             ------EEC--------TTSCEEEESSS--EEEECTTTCCEEEEECSTTCC
T ss_pred             ------eEC--------CCCcEEEccCc--EEEEeCCCCceeccccccccC
Confidence                  011        13457886544  999999999999877665543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.16  E-value=5.8e-05  Score=76.19  Aligned_cols=151  Identities=13%  Similarity=0.032  Sum_probs=96.6

Q ss_pred             CCCEEEEEe------------cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           47 EPDVALVAA------------LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        47 ~~~~v~v~t------------~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      .+..+|+++            .|+.|+.+|..+|+.++.+..+..+..-   ....+...+|+.   ++.+|.+|..+|+
T Consensus        92 dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~---~~~i~~~d~~~~~  165 (337)
T 1pby_B           92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITML---AWARDGSKLYGL---GRDLHVMDPEAGT  165 (337)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCE---EECTTSSCEEEE---SSSEEEEETTTTE
T ss_pred             CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCccee---EECCCCCEEEEe---CCeEEEEECCCCc
Confidence            556888886            6899999999999999999876543322   122233235544   6788888888776


Q ss_pred             eeeecccHHH---Hhh------------------------------------------------------------h---
Q 007199          115 MKKLSSSAEE---YIR------------------------------------------------------------R---  128 (613)
Q Consensus       115 l~~~~~~~~~---~v~------------------------------------------------------------~---  128 (613)
                      + ...+....   .+.                                                            .   
T Consensus       166 ~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          166 L-VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             E-EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             E-eeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            6 32222221   000                                                            0   


Q ss_pred             CceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEE
Q 007199          129 MPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIM  207 (613)
Q Consensus       129 sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ig  207 (613)
                      +..++.|| .+|++  ++.++.+|.++|++++.+..+....           .+       .++|       ....+|++
T Consensus       245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~-----------~~-------~~s~-------dg~~l~~~  297 (337)
T 1pby_B          245 STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYY-----------SV-------NVST-------DGSTVWLG  297 (337)
T ss_dssp             EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCC-----------EE-------EECT-------TSCEEEEE
T ss_pred             eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCcee-----------eE-------EECC-------CCCEEEEE
Confidence            01334455 35555  6788888888888887776442211           00       1111       13478999


Q ss_pred             eeeeEEEEEeCCCCceEEEEEece
Q 007199          208 RTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       208 r~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      ..|+.|+.+|.++|+.++.+...+
T Consensus       298 ~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          298 GALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEEEECGG
T ss_pred             cCCCcEEEEECcCCcEEEEEEcCC
Confidence            999999999999999999887763

>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}

Probab=98.13  E-value=1.2e-05  Score=87.61  Aligned_cols=159  Identities=17%  Similarity=0.205  Sum_probs=98.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc------eeec-cc---c-------cc----CCCCC-eEEEecC---C
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP------IYSS-YQ---A-------SF----NSNAS-EFYLDVD---E  101 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~------i~s~-~~---~-------~~----~~~~~-~~~i~~~---~  101 (613)
                      ...+||||+-||.|||+|.. |+++|.|=...-      +... +.   .       +.    ..+.. ..++.++   -
T Consensus        84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G  162 (570)
T 3hx6_A           84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG  162 (570)
T ss_dssp             CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred             CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence            45899999999999999998 999999953321      1110 00   0       00    00010 1223222   2


Q ss_pred             CCeEEEEecCC---CceeeecccHHH-----HhhhCceeec--CC--cEEEEee------cceEEEEECCCCcEEEEEec
Q 007199          102 DWELYFHSKRF---GKMKKLSSSAEE-----YIRRMPYISK--DG--GVTLGAM------KTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       102 DG~lY~~~~~~---G~l~~~~~~~~~-----~v~~sP~~~~--dg--~v~~Gs~------~~~~~~vD~~tG~~~~~~~~  163 (613)
                      ...+|++|..+   .++ .|.++...     +..+.|.+..  +|  .+++|+-      ...+|.||++||+++|++..
T Consensus       163 G~~~yALDVT~P~~p~~-LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~  241 (570)
T 3hx6_A          163 GKGLFALDVTDPANIKL-LWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEV  241 (570)
T ss_dssp             CSEEEEEECSSGGGCEE-EEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEE
T ss_pred             CcEEEEEECCCCCCCce-eEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEec
Confidence            34799999743   566 89988322     3668898764  33  5677774      56899999999999999987


Q ss_pred             CCCCCCCCCcCCCCCccccCCCcccccccccccc--cccccEEEEEeeeeEEEEEeCCCCce
Q 007199          164 DFSASTPGFQSDENKHVVPVDGYEELVESGVGNL--KRIRQLVYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~igr~d~~l~a~d~~~G~~  223 (613)
                      .+... .+            +   .+.++...+.  .-.-+.+|+|-..++|+-+|-.+...
T Consensus       242 ~~~~~-~~------------~---Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~  287 (570)
T 3hx6_A          242 TGRTG-VP------------N---GLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV  287 (570)
T ss_dssp             CCSTT-SC------------C---CEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred             CCCCc-cC------------C---ccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence            53211 00            0   0111111110  00234899999999999999877664

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.08  E-value=1.1e-05  Score=79.56  Aligned_cols=80  Identities=13%  Similarity=-0.016  Sum_probs=59.2

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCC-cceeEEEEEEeCCEEEEEecCCCc-c
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHP-NIVRWYGVESDQDFVYLSLERCTC-S  552 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~Hp-nIV~l~g~~~~~~~~~LV~E~~~G-s  552 (613)
                      +....+.+.|..+.||+....+|+.+++|.........+.+|+++|..+-.|. .+.++++++...+..++||||++| +
T Consensus        22 ~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~  101 (264)
T 1nd4_A           22 YDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD  101 (264)
T ss_dssp             CEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             CceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcc
Confidence            34433334666799999766667889999987654456889998888773342 256789988888889999999997 7


Q ss_pred             HH
Q 007199          553 LN  554 (613)
Q Consensus       553 L~  554 (613)
                      |.
T Consensus       102 l~  103 (264)
T 1nd4_A          102 LL  103 (264)
T ss_dssp             TT
T ss_pred             cC
Confidence            63

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.07  E-value=6.3e-05  Score=74.10  Aligned_cols=160  Identities=10%  Similarity=0.014  Sum_probs=113.8

Q ss_pred             CCCEEEEEecC---CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAALD---GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~d---G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .++.+|+||-+   ..|+.+|..||+++=++..++..++.-   ....++.+|+..-.++.++.+|++++++ .-.++.+
T Consensus        29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeG---i~~~~~~ly~ltw~~~~v~v~D~~tl~~-~~ti~~~  104 (243)
T 3mbr_X           29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAG---IVAWRDRLIQLTWRNHEGFVYDLATLTP-RARFRYP  104 (243)
T ss_dssp             ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEE---EEEETTEEEEEESSSSEEEEEETTTTEE-EEEEECS
T ss_pred             ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeE---EEEeCCEEEEEEeeCCEEEEEECCcCcE-EEEEeCC
Confidence            45899999876   489999999999999888766554431   1112357888888999999999999887 3334333


Q ss_pred             HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          124 EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       124 ~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .  ..--+..+++.+|+...++.++.+|++|.+++.+...+..-  .|+           ...+|+.        +.++.
T Consensus       105 ~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g--~~~-----------~~lNeLe--------~~~G~  161 (243)
T 3mbr_X          105 G--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG--RPL-----------DNLNELE--------WVNGE  161 (243)
T ss_dssp             S--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT--EEC-----------CCEEEEE--------EETTE
T ss_pred             C--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC--ccc-----------ccceeeE--------EeCCE
Confidence            1  22222343557999888899999999999999998765310  010           0111111        23678


Q ss_pred             EEEEee-eeEEEEEeCCCCceEEEEEeceee
Q 007199          204 VYIMRT-DYVLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       204 v~igr~-d~~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                      ||+.-+ +..|..+|+++|++.=.+..+...
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~  192 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALV  192 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGS
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCc
Confidence            999886 578999999999999888888654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.04  E-value=1.8e-05  Score=83.59  Aligned_cols=153  Identities=8%  Similarity=0.014  Sum_probs=104.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+.+++.++.||.|+..|..+|+.++++.... .+..-   ....+...+|+.++.||.++.+|..+|+. ...+.....
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~  255 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL---LYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDKIGL  255 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE---EEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCCCSE
T ss_pred             CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE---EEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecCCCC
Confidence            34556667788999999999999999997433 33221   12233345778887899999999999887 555554433


Q ss_pred             hhhCceeecCC-cEEEEee--------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          126 IRRMPYISKDG-GVTLGAM--------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       126 v~~sP~~~~dg-~v~~Gs~--------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      + .+.+++.|| .+++++.        ++.++..|+.+|++++.........           .+       .++|    
T Consensus       256 ~-~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----------~~-------~~~~----  312 (433)
T 3bws_A          256 P-RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKR-----------HI-------VSGN----  312 (433)
T ss_dssp             E-EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEE-----------EE-------EECS----
T ss_pred             c-eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcc-----------eE-------EECC----
Confidence            3 223455466 6778874        7899999999999998875432110           00       1111    


Q ss_pred             ccccccEEEE-EeeeeEEEEEeCCCCceEEEEEe
Q 007199          197 LKRIRQLVYI-MRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       197 ~~~~~~~v~i-gr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                         ....+|+ +..|+.|+.+|.++|+..+.+..
T Consensus       313 ---~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  343 (433)
T 3bws_A          313 ---TENKIYVSDMCCSKIEVYDLKEKKVQKSIPV  343 (433)
T ss_dssp             ---STTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ---CCCEEEEEecCCCEEEEEECCCCcEEEEecC
Confidence               1225555 48899999999999998887764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.02  E-value=4.1e-05  Score=81.62  Aligned_cols=151  Identities=13%  Similarity=0.134  Sum_probs=100.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.+++|+.||.|+..|..+|+.++++... .++.+-   ..  + ...++.++.||.++.+|..+|+. ...+.....
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~---~~--~-~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~  320 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL---QF--D-GIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQS  320 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE---EE--C-SSEEEEEETTSCEEEEETTTCCE-EEEECCCCS
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE---EE--C-CCEEEEEeCCCeEEEEECCCCCE-EEEEcCCcc
Confidence            4566777777788877777777777777632 233332   11  1 24566677799999999999887 444443221


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      ...+-... +..+++|+.|++++..|..+|+.++.+....... .++               .++..       .++.++
T Consensus       321 ~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v---------------~~~~~-------~~~~l~  376 (445)
T 2ovr_B          321 LTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ-SAV---------------TCLQF-------NKNFVI  376 (445)
T ss_dssp             CEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS-SCE---------------EEEEE-------CSSEEE
T ss_pred             cEEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCC-CCE---------------EEEEE-------CCCEEE
Confidence            11122233 5678889999999999999999999886432111 000               01111       134889


Q ss_pred             EEeeeeEEEEEeCCCCceEEEEE
Q 007199          206 IMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      .|..|+.|+.+|..+|+....+.
T Consensus       377 s~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          377 TSSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCceeeeee
Confidence            99999999999999999887764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.00  E-value=8.3e-05  Score=76.07  Aligned_cols=151  Identities=16%  Similarity=0.166  Sum_probs=103.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc-eeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP-IYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~-i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      ...+++.|+.||+|+..|..+|+.+.++..+.. +..-   ....+. .+++.++.||.++.++..+|+. ...+.....
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~---~~spdg-~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~  165 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL---AFSPDS-QYLATGTHVGKVNIFGVESGKK-EYSLDTRGK  165 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCE---EECTTS-SEEEEECTTSEEEEEETTTCSE-EEEEECSSS
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEE---EECCCC-CEEEEEcCCCcEEEEEcCCCce-eEEecCCCc
Confidence            456788899999999999999999999976542 2221   112222 4677778899999999998887 554443322


Q ss_pred             hhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      .-.+..++.||. +.+|+.|+++...|..+|+.+..+.......    .      .+       .++|       ....+
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v----~------~l-------~~sp-------d~~~l  221 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI----R------SL-------TFSP-------DSQLL  221 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC----C------EE-------EECT-------TSCEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce----e------EE-------EEcC-------CCCEE
Confidence            112334555664 5679999999999999999998885322110    0      00       1111       13478


Q ss_pred             EEEeeeeEEEEEeCCCCceEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      +.|..|+.|+.+|..+++..-.
T Consensus       222 ~s~s~dg~i~iwd~~~~~~~~~  243 (321)
T 3ow8_A          222 VTASDDGYIKIYDVQHANLAGT  243 (321)
T ss_dssp             EEECTTSCEEEEETTTCCEEEE
T ss_pred             EEEcCCCeEEEEECCCcceeEE
Confidence            8899999999999988876544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.99  E-value=5.1e-05  Score=76.44  Aligned_cols=150  Identities=11%  Similarity=0.050  Sum_probs=102.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..+++++.||.|+..|..+++...++.. ..++..-   ....+ ...++.++.||.++.+|..+++. ...+.....
T Consensus       152 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~---~~~~~-~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~  226 (337)
T 1gxr_A          152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI---DISND-GTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQ  226 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSEEEEEETTTTEE-EEEEECSSC
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEE---EECCC-CCEEEEEecCCcEEEEECCCCce-EeeecCCCc
Confidence            567899999999999999999999999975 3344432   11222 24666677799999999998877 444444333


Q ss_pred             hhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      +. +..++.|| .+++|+.++.++..|..+++..........+.           .+       .++|       ....+
T Consensus       227 v~-~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~-----------~~-------~~~~-------~~~~l  280 (337)
T 1gxr_A          227 IF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-----------SL-------KFAY-------CGKWF  280 (337)
T ss_dssp             EE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE-----------EE-------EECT-------TSSEE
T ss_pred             eE-EEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcccee-----------EE-------EECC-------CCCEE
Confidence            32 23344455 56679999999999999998764322111110           00       1111       13478


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      +.+..|+.|+.+|..+|+..+..
T Consensus       281 ~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          281 VSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEecCCCcEEEEECCCCeEEEEe
Confidence            88999999999999999988554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.98  E-value=5.5e-05  Score=77.45  Aligned_cols=151  Identities=12%  Similarity=0.083  Sum_probs=104.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      ....+++|+.||.|+..|..+|+..+++.... .+.+-   ....+. .+++.++.||.++.+|..+|+. ...+.... 
T Consensus       133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~---~~spdg-~~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~  207 (321)
T 3ow8_A          133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI---AYSPDG-KYLASGAIDGIINIFDIATGKL-LHTLEGHAM  207 (321)
T ss_dssp             TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE---EECTTS-SEEEEEETTSCEEEEETTTTEE-EEEECCCSS
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE---EECCCC-CEEEEEcCCCeEEEEECCCCcE-EEEEcccCC
Confidence            66789999999999999999999999998644 34332   112222 4666777899999999999887 43343221 


Q ss_pred             HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .| .+..++.||. +++|+.|+++..-|..+|+...++.......           .+      -.+.|       .+..
T Consensus       208 ~v-~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-----------~~------~~~sp-------~~~~  262 (321)
T 3ow8_A          208 PI-RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV-----------LN------VAFCP-------DDTH  262 (321)
T ss_dssp             CC-CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE-----------EE------EEECT-------TSSE
T ss_pred             ce-eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce-----------EE------EEECC-------CCCE
Confidence            12 2234555664 6679999999999999999988775322110           00      01111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ++.|..|++|+.+|..+|+...++
T Consensus       263 l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCEEEEEE
Confidence            888999999999999998876554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.98  E-value=5e-05  Score=81.16  Aligned_cols=148  Identities=11%  Similarity=0.091  Sum_probs=102.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.+++|+.||+|+..|..+|+.+.++.. ..++.+-   ....+. ..++.++.||.++.+|..+|+. ...+.....
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~---~~~~~~-~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~  353 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST---IYDHER-KRCISASMDTTIRIWDLENGEL-MYTLQGHTA  353 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EEETTT-TEEEEEETTSCEEEEETTTTEE-EEEECCCSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEE---EEcCCC-CEEEEEeCCCcEEEEECCCCcE-EEEEeCCCC
Confidence            568899999999999999999999999974 3345443   111122 3666777799999999999887 555543321


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      .-.+-..+ +..+++|+.|+++...|..+++..+.+.......           .+       .+.+       .+..+.
T Consensus       354 ~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-----------~~-------~~~~-------~~~~l~  407 (464)
T 3v7d_B          354 LVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA-----------IT-------TFYV-------SDNILV  407 (464)
T ss_dssp             CEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCC-----------EE-------EEEE-------CSSEEE
T ss_pred             cEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeecCCCCcc-----------EE-------EEEe-------CCCEEE
Confidence            11222234 6678899999999999999999998886443221           00       1111       122445


Q ss_pred             EEeeeeEEEEEeCCCCceEEE
Q 007199          206 IMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      .|. |+.|+.+|.++|+.+..
T Consensus       408 ~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          408 SGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEE-TTEEEEEETTTCCEEES
T ss_pred             Eec-CCeEEEEECCCCcEEeh
Confidence            554 99999999999987754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.97  E-value=5.8e-05  Score=79.66  Aligned_cols=153  Identities=10%  Similarity=-0.015  Sum_probs=102.6

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecC-------CCCeEEEEecCCCceeee
Q 007199           47 EPDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD-------EDWELYFHSKRFGKMKKL  118 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~-------~DG~lY~~~~~~G~l~~~  118 (613)
                      .+..+|+++ .||.|+.+|..+|+.++++..+..+..-   ....+...+++.+.       .||.||.+|..+|++ ..
T Consensus       222 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~  297 (433)
T 3bws_A          222 IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL---LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-ID  297 (433)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE---EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-EE
T ss_pred             CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE---EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-Ee
Confidence            456776666 7999999999999999999876654432   12223334555542       589999999998877 33


Q ss_pred             cccHHHHhhhCceeecCC-cEEE-EeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          119 SSSAEEYIRRMPYISKDG-GVTL-GAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       119 ~~~~~~~v~~sP~~~~dg-~v~~-Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .+.....+ ...+++.|| .+|+ ++.+++++..|..+|++++.+.......+          .        .++|    
T Consensus       298 ~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~----------~--------~~s~----  354 (433)
T 3bws_A          298 TIGPPGNK-RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNT----------I--------ALSP----  354 (433)
T ss_dssp             EEEEEECE-EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE----------E--------EECT----
T ss_pred             eccCCCCc-ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCe----------E--------EEcC----
Confidence            33222222 234455577 4655 68999999999999999998874432110          0        1111    


Q ss_pred             ccccccEEEEEee---------------eeEEEEEeCCCCceEEEEEe
Q 007199          197 LKRIRQLVYIMRT---------------DYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       197 ~~~~~~~v~igr~---------------d~~l~a~d~~~G~~~Wn~t~  229 (613)
                         ....+|++..               |+.|+.+|..+|+....+..
T Consensus       355 ---dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          355 ---DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             ---TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             ---CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence               1235677665               57999999999998887754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.94  E-value=6.5e-05  Score=74.90  Aligned_cols=153  Identities=14%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.+++++.||.|+..|  +++..+.+... .++..-.-  .+.+ ...++.++.||.++.+|... ..+.+.......
T Consensus       113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~--~~~~-~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~  186 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV--VSFS-ENKFLTASADKTIKLWQNDK-VIKTFSGIHNDV  186 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE--EETT-TTEEEEEETTSCEEEEETTE-EEEEECSSCSSC
T ss_pred             cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE--ccCC-CCEEEEEECCCCEEEEecCc-eEEEEeccCccc
Confidence            567899999999999999  88999988753 34443311  1111 23666777799999999432 221333222333


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      + .+..++.++.+++|+.++.++..|..+|+.+..+.......    .      .+       .++        .++.++
T Consensus       187 i-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i----~------~~-------~~~--------~~~~l~  240 (313)
T 3odt_A          187 V-RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFV----Y------CI-------KLL--------PNGDIV  240 (313)
T ss_dssp             E-EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE----E------EE-------EEC--------TTSCEE
T ss_pred             E-EEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceE----E------EE-------EEe--------cCCCEE
Confidence            3 23345568889999999999999999999999986432110    0      00       011        133688


Q ss_pred             EEeeeeEEEEEeCCCCceEEEEEece
Q 007199          206 IMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      .|..|+.|+.+|.++|+..+.+....
T Consensus       241 ~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          241 SCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             EEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             EEecCCEEEEEECCCCceeEEEeccC
Confidence            99999999999999999888876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.93  E-value=3.8e-05  Score=81.90  Aligned_cols=147  Identities=13%  Similarity=0.137  Sum_probs=106.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .++.++.|+.||+|+..|..+|+.++++... ++|.+-   ...   +.+++.++.||.++.+|..+|+. ...+.... 
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~---~~~---~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~~  200 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS---QMR---DNIIISGSTDRTLKVWNAETGEC-IHTLYGHTS  200 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEE---EEE---TTEEEEEETTSCEEEEETTTTEE-EEEECCCSS
T ss_pred             cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEE---Eec---CCEEEEEeCCCeEEEEECCcCcE-EEEECCCCC
Confidence            5678999999999999999999999999743 345443   111   23677777799999999999877 44444221 


Q ss_pred             HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          125 YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      .| .+-... +..+++|+.|++++..|..+|+.++.+.......           .        ++..       .+..+
T Consensus       201 ~v-~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v-----------~--------~~~~-------~~~~l  252 (445)
T 2ovr_B          201 TV-RCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV-----------R--------CVQY-------DGRRV  252 (445)
T ss_dssp             CE-EEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE-----------E--------EEEE-------CSSCE
T ss_pred             cE-EEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE-----------E--------EEEE-------CCCEE
Confidence            12 122233 6678899999999999999999999886432110           0        1111       13478


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +.|..|+.|+.+|.++++..+.+.
T Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~  276 (445)
T 2ovr_B          253 VSGAYDFMVKVWDPETETCLHTLQ  276 (445)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEeEEec
Confidence            999999999999999998877664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.92  E-value=0.00013  Score=76.57  Aligned_cols=170  Identities=13%  Similarity=0.069  Sum_probs=107.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+..+++|+.||.|+..|..+|+.+..+.. ..+|..-   ....+ ..+++.++.||.++.+|..+|+. ...+... .
T Consensus       108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~---~~~~~-~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~  182 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL---KFFPS-GEALISSSQDMQLKIWSVKDGSN-PRTLIGHRA  182 (420)
T ss_dssp             SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE---EECTT-SSEEEEEETTSEEEEEETTTCCC-CEEEECCSS
T ss_pred             CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE---EECCC-CCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCC
Confidence            667899999999999999999999988743 3455443   11222 24667777899999999998877 3333322 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCc------ccccccccccc
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGY------EELVESGVGNL  197 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  197 (613)
                      .| .+..++.|| .+++|+.|+++...|..+|+.++.+....... .+....   ...+....      ...+..-...+
T Consensus       183 ~v-~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~---~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          183 TV-TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH-DGVNSI---ALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             CE-EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTT-CCEEEE---EEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cE-EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCC-CCccEE---EEecCCcceeeecccCcccceEEcC
Confidence            22 223445465 47789999999999999999999997532111 000000   00000000      00000000001


Q ss_pred             cccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          198 KRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       198 ~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                        ....|+.|..|+.|+.+|.++++....+.
T Consensus       258 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          258 --YGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             --TTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             --CCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence              13488889999999999999998776653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.91  E-value=0.00018  Score=72.10  Aligned_cols=157  Identities=10%  Similarity=0.034  Sum_probs=108.5

Q ss_pred             CEEEEEec---CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           49 DVALVAAL---DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        49 ~~v~v~t~---dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      +.+|+++-   ++.|+.+|..||+++-++..++.....   ....+.+.+|+..-.++.++.+|..++++ .-.+..+..
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge---Gi~~~g~~lyv~t~~~~~v~viD~~t~~v-~~~i~~g~~  107 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE---GLTLLNEKLYQVVWLKNIGFIYDRRTLSN-IKNFTHQMK  107 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE---EEEEETTEEEEEETTCSEEEEEETTTTEE-EEEEECCSS
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE---EEEEeCCEEEEEEecCCEEEEEECCCCcE-EEEEECCCC
Confidence            79999985   589999999999999999876532221   01111246898888999999999999877 333433311


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                       ...-+-.+++.+|+...+++++.||++|.+++.+...+..-  .|+           ...+++.        +.++.+|
T Consensus       108 -~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~--~p~-----------~~~nele--------~~dg~ly  165 (266)
T 2iwa_A          108 -DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG--HRV-----------IRLNELE--------YINGEVW  165 (266)
T ss_dssp             -SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT--EEC-----------CCEEEEE--------EETTEEE
T ss_pred             -CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC--ccc-----------ccceeEE--------EECCEEE
Confidence             11112233457999888899999999999999988765310  010           0000110        1245899


Q ss_pred             EEee-eeEEEEEeCCCCceEEEEEece
Q 007199          206 IMRT-DYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       206 igr~-d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      +..+ +..|..+|+++|++.=.+.++.
T Consensus       166 vn~~~~~~V~vID~~tg~V~~~I~~~g  192 (266)
T 2iwa_A          166 ANIWQTDCIARISAKDGTLLGWILLPN  192 (266)
T ss_dssp             EEETTSSEEEEEETTTCCEEEEEECHH
T ss_pred             EecCCCCeEEEEECCCCcEEEEEECCC
Confidence            8886 5899999999999998888863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.89  E-value=8.7e-05  Score=77.30  Aligned_cols=152  Identities=13%  Similarity=0.097  Sum_probs=106.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..+++|+.||.|+..| .+|+..+++... .+|.+-   ....+. ..++.++.||.++.+|..+|+. ...+.....
T Consensus       119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~---~~~~~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~  192 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSV---KWNKDG-THIISMDVENVTILWNVISGTV-MQHFELKET  192 (425)
T ss_dssp             TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEE---EECTTS-SEEEEEETTCCEEEEETTTTEE-EEEECCC--
T ss_pred             CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEE---EECCCC-CEEEEEecCCeEEEEECCCCcE-EEEeecccc
Confidence            567899999999999999 889999999753 445443   112222 3566667799999999998887 555544433


Q ss_pred             h---------------hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccc
Q 007199          126 I---------------RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       126 v---------------~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                      -               ..+.....++.+++|+.++.++..|..+|+.+..+.......           .+      -.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i-----------~~------~~~  255 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI-----------SV------LEF  255 (425)
T ss_dssp             -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE-----------EE------EEE
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce-----------EE------EEE
Confidence            2               234455668889999999999999999999988875322100           00      011


Q ss_pred             ccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +|       ....++.+..|+.|+.+|..+++....+.
T Consensus       256 ~~-------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  286 (425)
T 1r5m_A          256 ND-------TNKLLLSASDDGTLRIWHGGNGNSQNCFY  286 (425)
T ss_dssp             ET-------TTTEEEEEETTSCEEEECSSSBSCSEEEC
T ss_pred             CC-------CCCEEEEEcCCCEEEEEECCCCccceEec
Confidence            11       13478889999999999999887766653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.85  E-value=9.4e-05  Score=78.71  Aligned_cols=150  Identities=10%  Similarity=0.065  Sum_probs=103.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .++.+++|+.||+|+..|..+|+..+++... ++|..-  . .  + ..+++.++.||.++.+|..+|+. ...+.... 
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~-~--~-~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~  214 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--Q-Y--D-ERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCE  214 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE--E-C--C-SSEEEEEETTSCEEEEESSSCCE-EEEECCCCS
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEE--E-E--C-CCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCC
Confidence            6778999999999999999999999999743 345432  1 1  2 24667777799999999999987 44443221 


Q ss_pred             HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          125 YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      .| .+-... ++.+++|+.|++++..|..+++.......-.... .+        .       ..+..       .++.+
T Consensus       215 ~v-~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~--------v-------~~~~~-------~~~~l  269 (435)
T 1p22_A          215 AV-LHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-AA--------V-------NVVDF-------DDKYI  269 (435)
T ss_dssp             CE-EEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-SC--------E-------EEEEE-------ETTEE
T ss_pred             cE-EEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-Cc--------E-------EEEEe-------CCCEE
Confidence            11 112233 6778899999999999999998663222111100 00        0       01111       24588


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +.|..|+.|+.+|.++|+....+.
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~  293 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLN  293 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEc
Confidence            999999999999999999887765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.85  E-value=0.00023  Score=71.65  Aligned_cols=153  Identities=16%  Similarity=0.178  Sum_probs=103.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+..++.|+.||.|+..|..+|+.+-++... .++..-   ....+ ..+++.++.||.++.+|..+|+. ...+... .
T Consensus        76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~---~~~~~-~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~  150 (312)
T 4ery_A           76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQ-SNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSD  150 (312)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE---EECSS-SSEEEEEETTSCEEEEETTTCCE-EEEECCCSS
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE---EEcCC-CCEEEEEeCCCcEEEEECCCCEE-EEEecCCCC
Confidence            5678999999999999999999999988753 344432   11112 24677777899999999998876 3333322 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .| .+-.++.|| .+++|+.|+++...|..+|+.+..+......   +..      .+       .++|       ....
T Consensus       151 ~v-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~~------~~-------~~~~-------~~~~  206 (312)
T 4ery_A          151 PV-SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVS------FV-------KFSP-------NGKY  206 (312)
T ss_dssp             CE-EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---CEE------EE-------EECT-------TSSE
T ss_pred             cE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---ceE------EE-------EECC-------CCCE
Confidence            12 122344455 4668999999999999999998877432210   000      00       1111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ++.|..|+.|+.+|..+|+....+.
T Consensus       207 l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          207 ILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEE
Confidence            8889999999999999998776553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.85  E-value=0.00013  Score=77.54  Aligned_cols=148  Identities=11%  Similarity=0.078  Sum_probs=104.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee--ccc-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL--SSS-A  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~--~~~-~  122 (613)
                      .++.+++|+.||+|+..|..+|+...++.... +|.+-   ...   ...++.++.||.++.+|..++.....  .+. -
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l---~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL---RFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE---ECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE---EEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            67899999999999999999999999997533 34332   111   23677778899999999988765221  111 1


Q ss_pred             HHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          123 EEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       123 ~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      ...|.. -.. ++..+++|+.|+++...|..+|+.+..+.......           .        ++..       .++
T Consensus       256 ~~~v~~-~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----------~--------~~~~-------~~~  307 (435)
T 1p22_A          256 RAAVNV-VDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-----------A--------CLQY-------RDR  307 (435)
T ss_dssp             SSCEEE-EEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-----------E--------EEEE-------ETT
T ss_pred             CCcEEE-EEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE-----------E--------EEEe-------CCC
Confidence            111211 112 35678899999999999999999999986432110           0        1111       145


Q ss_pred             EEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      .++.|..|+.|+.+|.++|+....+.
T Consensus       308 ~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          308 LVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEe
Confidence            88999999999999999999887664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.84  E-value=4.6e-05  Score=76.04  Aligned_cols=146  Identities=12%  Similarity=0.103  Sum_probs=99.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC--CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT--GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~--~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-  123 (613)
                      .++.+++++.||.|+..|  +++....+..  ..++..-   ....+. . ++.++.||.++.+|..+|+. ...+... 
T Consensus       154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~---~~~~~~-~-~~~~~~dg~i~i~d~~~~~~-~~~~~~~~  225 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHL---AVVDDG-H-FISCSNDGLIKLVDMHTGDV-LRTYEGHE  225 (313)
T ss_dssp             TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEE---EEEETT-E-EEEEETTSEEEEEETTTCCE-EEEEECCS
T ss_pred             CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEE---EEcCCC-e-EEEccCCCeEEEEECCchhh-hhhhhcCC
Confidence            578999999999999999  6666666653  3344332   111222 2 66677799999999999887 4444322 


Q ss_pred             HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          124 EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       124 ~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      ..| .+-.++.||.+++|+.++.++..|..+|+.++.+.......    .      .+       ...        .++.
T Consensus       226 ~~i-~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i----~------~~-------~~~--------~~~~  279 (313)
T 3odt_A          226 SFV-YCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI----W------SV-------DCM--------SNGD  279 (313)
T ss_dssp             SCE-EEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCE----E------EE-------EEC--------TTSC
T ss_pred             ceE-EEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceE----E------EE-------EEc--------cCCC
Confidence            122 22345568889999999999999999999999987543110    0      00       011        1345


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      ++.+..|+.|+.+|.++++....
T Consensus       280 ~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          280 IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEEeCCCcEEEEeCCCCceeeh
Confidence            77899999999999887765443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.82  E-value=0.00013  Score=75.59  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .+..++.|+.||+|+..|..+|+.+-++.. ..+|..-   ....+...+++-++.||.++.+|.++|+. .-.+.... 
T Consensus       138 dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~---~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~  213 (344)
T 4gqb_B          138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV---AASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAP  213 (344)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE---EecCCCCCceeeeccccccccccccccce-eeeeeccee
Confidence            567899999999999999999999999974 3455443   12222234778888899999999999877 33333221 


Q ss_pred             -HhhhCceee-cCCcE-EEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          125 -YIRRMPYIS-KDGGV-TLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       125 -~v~~sP~~~-~dg~v-~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                       ....+-.+. .++.+ .+|+.|+++...|.++|+.+.++..-....    .     ..        .++|.      ..
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v----~-----~v--------~fsp~------g~  270 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV----T-----GL--------VFSPH------SV  270 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCE----E-----EE--------EECSS------SS
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCE----E-----EE--------EEccC------CC
Confidence             111112222 24544 569999999999999999999886432110    0     00        11111      01


Q ss_pred             cEEEEEeeeeEEEEEeCCCCce
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~  223 (613)
                      ..|.-|..|++|+.+|..+|+.
T Consensus       271 ~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          271 PFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             CCEEEEETTSCEEEECTTCCEE
T ss_pred             eEEEEEeCCCeEEEEECCCCcE
Confidence            2466789999999999988864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.77  E-value=0.00011  Score=76.43  Aligned_cols=107  Identities=13%  Similarity=0.170  Sum_probs=79.5

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeC-------CCceeeccccccCCCCCeEEEecCCC---CeEEEEecCCCceeeec
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGT-------GRPIYSSYQASFNSNASEFYLDVDED---WELYFHSKRFGKMKKLS  119 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~-------~~~i~s~~~~~~~~~~~~~~i~~~~D---G~lY~~~~~~G~l~~~~  119 (613)
                      .+++|+.||.|+..|..+++.++++..       ..++.+-   ....+ ..+++.++.|   |.++.+|..+++. ...
T Consensus       199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i---~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~  273 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV---KFSPQ-GSLLAIAHDSNSFGCITLYETEFGER-IGS  273 (397)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE---EECSS-TTEEEEEEEETTEEEEEEEETTTCCE-EEE
T ss_pred             eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE---EECCC-CCEEEEEecCCCCceEEEEECCCCcc-cce
Confidence            899999999999999999999999987       5666543   11222 2466667779   9999999998877 444


Q ss_pred             ccH--------------HHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEe
Q 007199          120 SSA--------------EEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       120 ~~~--------------~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      +..              ...|. +..++.|| .+++|+.+++++..|..+|+.+..+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          274 LSVPTHSSQASLGEFAHSSWVM-SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             ECBC--------CCBSBSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eccCcccccccccccccCCcEE-EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            443              11221 22334344 56789999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.76  E-value=7.3e-05  Score=77.86  Aligned_cols=146  Identities=15%  Similarity=0.056  Sum_probs=102.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .++.+++++.||.|+..|..+++.+.++... .+|..-   ....+. .+++.++.||.++.+|..+++. ...+... .
T Consensus       216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~---~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~  290 (425)
T 1r5m_A          216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL---EFNDTN-KLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQ  290 (425)
T ss_dssp             ETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE---EEETTT-TEEEEEETTSCEEEECSSSBSC-SEEECCCSS
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE---EECCCC-CEEEEEcCCCEEEEEECCCCcc-ceEecCCCc
Confidence            4688999999999999999999999998643 344432   111122 3666677799999999988876 4444322 2


Q ss_pred             HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          125 YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      .| .+..++.||.+++|+.++.++..|..+|+.+..+.......    .      .+       .++|       ....|
T Consensus       291 ~i-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i----~------~~-------~~s~-------~~~~l  345 (425)
T 1r5m_A          291 SI-VSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPI----F------AG-------RISQ-------DGQKY  345 (425)
T ss_dssp             CE-EEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCE----E------EE-------EECT-------TSSEE
T ss_pred             cE-EEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccE----E------EE-------EEcC-------CCCEE
Confidence            22 23345557788899999999999999999999887532110    0      00       1111       13478


Q ss_pred             EEEeeeeEEEEEeCCCCc
Q 007199          205 YIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~  222 (613)
                      +.|..|+.|+.+|..++.
T Consensus       346 ~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          346 AVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEETTSCEEEEECHHHH
T ss_pred             EEEECCCeEEEEECCCCc
Confidence            889999999999988777

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.76  E-value=0.0004  Score=70.35  Aligned_cols=115  Identities=19%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCc----eeeccccccCCCCCeEEEecCC-----------CCeEEEEec
Q 007199           47 EPDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRP----IYSSYQASFNSNASEFYLDVDE-----------DWELYFHSK  110 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~----i~s~~~~~~~~~~~~~~i~~~~-----------DG~lY~~~~  110 (613)
                      .+..+|+++ .+|.|+.+|..+|+.++++..+..    -..........++..+|+....           ++.++.+|.
T Consensus        53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            455677665 689999999999999999976431    1111111123333346655542           489999999


Q ss_pred             CCCceee--ecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          111 RFGKMKK--LSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       111 ~~G~l~~--~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      .+|+..+  ..+..+..+ .+..++.||.+|+++.+  ++.+|+.+|++++.+..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~s~dg~l~~~~~~--i~~~d~~~~~~~~~~~~~  185 (349)
T 1jmx_B          133 ADGLEAKPVRTFPMPRQV-YLMRAADDGSLYVAGPD--IYKMDVKTGKYTVALPLR  185 (349)
T ss_dssp             GGGGGBCCSEEEECCSSC-CCEEECTTSCEEEESSS--EEEECTTTCCEEEEECST
T ss_pred             CCccccceeeeccCCCcc-cceeECCCCcEEEccCc--EEEEeCCCCceecccccc
Confidence            8865422  112222111 12236778889997554  999999999999988654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.74  E-value=0.00029  Score=70.86  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=101.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+..++.|+.||.|+..|..+|+....+... .+|..-   ....+ ..+++.++.||.++.+|..+|+. ...+... .
T Consensus        34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~---~~~~~-~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~  108 (312)
T 4ery_A           34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---AWSSD-SNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSN  108 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSEEEEEETTTCCE-EEEEECCSS
T ss_pred             CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEE---EEcCC-CCEEEEECCCCEEEEEECCCCcE-EEEEcCCCC
Confidence            5678999999999999999999999888643 344332   11222 24677777899999999998876 3333221 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .|. +..+..|+ .+++|+.|++++..|..+|+.+..+.......    .      .+       .+++       ....
T Consensus       109 ~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v----~------~~-------~~~~-------~~~~  163 (312)
T 4ery_A          109 YVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV----S------AV-------HFNR-------DGSL  163 (312)
T ss_dssp             CEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----E------EE-------EECT-------TSSE
T ss_pred             CEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE----E------EE-------EEcC-------CCCE
Confidence            121 12233344 57789999999999999999998875432110    0      00       0111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ++.|..|+.|+.+|..+++....+
T Consensus       164 l~~~~~d~~i~~wd~~~~~~~~~~  187 (312)
T 4ery_A          164 IVSSSYDGLCRIWDTASGQCLKTL  187 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCceeeEE
Confidence            888999999999999988766543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.74  E-value=0.0005  Score=70.55  Aligned_cols=153  Identities=15%  Similarity=0.147  Sum_probs=103.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .++.++.++.||+|+..|..+|+.+-++... .+|.+-   ....+ ..+++.++.||.++.+|..+|.. ...+.... 
T Consensus       153 ~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~---~~~~~-~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~  227 (340)
T 1got_B          153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL---SLAPD-TRLFVSGACDASAKLWDVREGMC-RQTFTGHES  227 (340)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSCEEEEETTTCSE-EEEECCCSS
T ss_pred             CCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE---EECCC-CCEEEEEeCCCcEEEEECCCCee-EEEEcCCcC
Confidence            3567899999999999999999999988642 344432   11112 24777788899999999998877 44443221 


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .| .+-+++.|| .+++|+.|+++...|..+++.+..+.......  +..      .+       .++|       ....
T Consensus       228 ~v-~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~--~v~------~~-------~~s~-------~g~~  284 (340)
T 1got_B          228 DI-NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GIT------SV-------SFSK-------SGRL  284 (340)
T ss_dssp             CE-EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS--CEE------EE-------EECT-------TSSE
T ss_pred             CE-EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCccc--ceE------EE-------EECC-------CCCE
Confidence            12 122333355 46679999999999999999998875432110  000      00       1111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      +..|..|+.|+.+|..+++..-.+
T Consensus       285 l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          285 LLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCeEEEEEcccCcEeeEe
Confidence            888999999999999988876544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.72  E-value=0.0005  Score=72.17  Aligned_cols=153  Identities=12%  Similarity=0.017  Sum_probs=101.8

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+..+++|+.||.|+..|..+|+.+.++... .++..-   ..+   ...++.++.||.++.+|..++......+... .
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~---~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  218 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL---SWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS  218 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE---EEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence            5678999999999999999999999999743 344332   111   2466777789999999998543323333322 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .|. +..++.|| .+++|+.|++++..|..+|+.++.+.........         .        ...|.      ....
T Consensus       219 ~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~---------~--------~~~p~------~~~l  274 (401)
T 4aez_A          219 EVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA---------V--------AWCPW------QSNL  274 (401)
T ss_dssp             CEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE---------E--------EECTT------STTE
T ss_pred             Cee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE---------E--------EECCC------CCCE
Confidence            221 22233354 5778999999999999999999988543221100         0        01110      1235


Q ss_pred             EEEEe--eeeEEEEEeCCCCceEEEEEe
Q 007199          204 VYIMR--TDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       204 v~igr--~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      +..|.  .|+.|+.+|..+|+....+..
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~  302 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVDA  302 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            55544  799999999999999888754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00029  Score=74.55  Aligned_cols=174  Identities=9%  Similarity=0.005  Sum_probs=108.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC---CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeecccH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT---GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~---~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~  122 (613)
                      .+..+++|+.||+|+..|..+++.++++..   ..+|.+-   ....+ ..+++.++.||.++.+|.++|+. +.+.+.-
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~---~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  256 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI---CIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGD  256 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE---EECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTT
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE---EECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCC
Confidence            467899999999999999999999999975   2455443   11222 24677777899999999998876 2222222


Q ss_pred             HHH---hhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCC-CcCCCCC----ccccCCCcccccccc
Q 007199          123 EEY---IRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPG-FQSDENK----HVVPVDGYEELVESG  193 (613)
Q Consensus       123 ~~~---v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~  193 (613)
                      ...   +.-+|.++.|| .+++|+.|+++...|..+|+.+..+.......... +..++..    ..+... ....+..-
T Consensus       257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~v~~l  335 (437)
T 3gre_A          257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR-SLNALSTI  335 (437)
T ss_dssp             CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC-SGGGGCCE
T ss_pred             CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc-cCCceEEE
Confidence            222   22344555566 56679999999999999999999998543221100 0000000    000000 00000000


Q ss_pred             cccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          194 VGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       194 ~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ..  . .+..|+.|..|+.|+.+|..+|+..-.+.
T Consensus       336 ~~--~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          336 SV--S-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             EE--E-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             EE--C-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            00  0 12478889999999999999998776554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.70  E-value=0.00025  Score=73.54  Aligned_cols=156  Identities=10%  Similarity=-0.052  Sum_probs=99.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-----CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-----GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-----~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      .++.+++|+.||+|+.-|..+|+....+..     ..+|.+-   ....+ ..+++.++.||.+..+|..+|+. ...+.
T Consensus        92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v---~~spd-g~~l~sgs~d~~i~iwd~~~~~~-~~~~~  166 (344)
T 4gqb_B           92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTV---SVLSS-GTQAVSGSKDICIKVWDLAQQVV-LSSYR  166 (344)
T ss_dssp             TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEE---EECTT-SSEEEEEETTSCEEEEETTTTEE-EEEEC
T ss_pred             CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEE---EECCC-CCEEEEEeCCCeEEEEECCCCcE-EEEEc
Confidence            457899999999999999999988776542     2345432   11222 24677778899999999999987 44443


Q ss_pred             HH-HHhhhCceeecCC--cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          122 AE-EYIRRMPYISKDG--GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       122 ~~-~~v~~sP~~~~dg--~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                      .. ..|.. -.++.|+  .+..|+.|+++..-|..+|+...++....... ..        .+      -...|.     
T Consensus       167 ~h~~~V~~-~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~--------~~------~~~~p~-----  225 (344)
T 4gqb_B          167 AHAAQVTC-VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY-LP--------TS------LAWHPQ-----  225 (344)
T ss_dssp             CCSSCEEE-EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC-CE--------EE------EEECSS-----
T ss_pred             CcCCceEE-EEecCCCCCceeeeccccccccccccccceeeeeecceeec-cc--------ee------eeecCC-----
Confidence            32 22222 2233344  35679999999999999999988775332110 00        00      001110     


Q ss_pred             ccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          199 RIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       199 ~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                       ....+..|..|++|+.+|.++|+.+..+..
T Consensus       226 -~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          226 -QSEVFVFGDENGTVSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             -CTTEEEEEETTSEEEEEESCC--CCEEEEC
T ss_pred             -CCcceEEeccCCcEEEEECCCCcEEEEEcC
Confidence             123567799999999999999998877664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.69  E-value=0.00016  Score=74.97  Aligned_cols=161  Identities=8%  Similarity=-0.030  Sum_probs=102.7

Q ss_pred             CCCE-EEEEecCCcEEEEeCCC------CeeeE-----EeeC--------CCceeeccccccCCCCCeEEEecCCCCeEE
Q 007199           47 EPDV-ALVAALDGTIHLVDTKL------GKIRW-----SFGT--------GRPIYSSYQASFNSNASEFYLDVDEDWELY  106 (613)
Q Consensus        47 ~~~~-v~v~t~dG~l~ald~~t------G~~~W-----~~~~--------~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY  106 (613)
                      .+.. +++++.||.|+..|..+      ++.+.     ++..        ..++.+-   ....+.  +++.++.||.++
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~--~l~~~~~dg~i~  210 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV---DISERG--LIATGFNNGTVQ  210 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE---EECTTS--EEEEECTTSEEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEE---EECCCc--eEEEEeCCCcEE
Confidence            5677 89999999999999988      77766     6632        2333322   122222  777788899999


Q ss_pred             EEecCCCceeeecccH-------HHHhhhCceeecCC-cEEEEeec---ceEEEEECCCCcEEEEEecCCCCCCCCCc--
Q 007199          107 FHSKRFGKMKKLSSSA-------EEYIRRMPYISKDG-GVTLGAMK---TSVFLVDVKSGRVVDNYVLDFSASTPGFQ--  173 (613)
Q Consensus       107 ~~~~~~G~l~~~~~~~-------~~~v~~sP~~~~dg-~v~~Gs~~---~~~~~vD~~tG~~~~~~~~~~~~~~~~~~--  173 (613)
                      .+|..+++. ...+..       ...|. +..++.|| .+++|+.+   +.++..|..+|+.+..+............  
T Consensus       211 i~d~~~~~~-~~~~~~~~~h~~~~~~i~-~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          211 ISELSTLRP-LYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             EEETTTTEE-EEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred             EEECCCCce-eEEEeccccccccCCccc-eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence            999998877 555554       22332 23344455 46679999   99999999999999998642100000000  


Q ss_pred             -CCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          174 -SDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       174 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                       ..... .+      -.++|       ....|+.|..|+.|+.+|..+++....+.
T Consensus       289 ~~~~~v-~~------~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          289 AHSSWV-MS------LSFND-------SGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SBSSCE-EE------EEECS-------SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccCCcE-EE------EEECC-------CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence             00000 00      01111       13478889999999999999999888776

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.69  E-value=0.00013  Score=75.83  Aligned_cols=153  Identities=12%  Similarity=0.085  Sum_probs=100.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH--H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA--E  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~--~  123 (613)
                      .+..++.|+.||+|+..|..+|+.+.++... .+|.+-   ....+.+.+++.++.||.++.+|..+|+. ...+..  .
T Consensus       150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v---~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-~~~~~~~~~  225 (357)
T 4g56_B          150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV---AACPGKDTIFLSCGEDGRILLWDTRKPKP-ATRIDFCAS  225 (357)
T ss_dssp             SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTTCSSCEEEEETTSCEEECCTTSSSC-BCBCCCTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE---EEccCCCceeeeeccCCceEEEECCCCce-eeeeeeccc
Confidence            5678899999999999999999999999753 344432   12222334677778899999999998876 222221  1


Q ss_pred             HHhhhCceeec-CC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          124 EYIRRMPYISK-DG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       124 ~~v~~sP~~~~-dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      ...-.+-.++. ++ .+.+|+.+++++..|..+|+.+..+.......           .+      -.++|.      ..
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v-----------~~------l~~sp~------~~  282 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI-----------TG------LAYSYH------SS  282 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE-----------EE------EEECSS------SS
T ss_pred             cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE-----------EE------EEEcCC------CC
Confidence            11111122222 23 45579999999999999999998885332110           00      011111      01


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceEEE
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      ..|.-|..|++|+.+|.++|+....
T Consensus       283 ~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          283 PFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEeEE
Confidence            2466789999999999999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.69  E-value=0.00027  Score=71.43  Aligned_cols=155  Identities=10%  Similarity=0.058  Sum_probs=101.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..++.++.||+|+..|..+++.+.++.. ..+|.+-   ....+ ..+++.++.||.++.+|..+++. ...+.....
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~---~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~  258 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV---TVSPD-GSLCASGGKDGQAMLWDLNEGKH-LYTLDGGDI  258 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTT-SSEEEEEETTCEEEEEETTTTEE-EEEEECSSC
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE---EECCC-CCEEEEEeCCCeEEEEEeccCce-eeeecCCce
Confidence            445677889999999999999999998864 3355432   11222 24677778899999999998877 555554444


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      |.. -+++.++.+++|+.+++++..|..++..++.+..............    .+.    .-.++|       ....|+
T Consensus       259 v~~-~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~----~v~----~l~~s~-------dg~~l~  322 (340)
T 4aow_A          259 INA-LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP----QCT----SLAWSA-------DGQTLF  322 (340)
T ss_dssp             EEE-EEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCC----CEE----EEEECT-------TSSEEE
T ss_pred             EEe-eecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC----CEE----EEEECC-------CCCEEE
Confidence            432 3445578899999999999999999999998864322110000000    000    000111       134788


Q ss_pred             EEeeeeEEEEEeCCCCc
Q 007199          206 IMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~  222 (613)
                      .|..|+.|+.+|.++|.
T Consensus       323 sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          323 AGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTSCEEEEEEEC--
T ss_pred             EEeCCCEEEEEeCCCcC
Confidence            89999999999988885

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.68  E-value=0.00056  Score=68.70  Aligned_cols=112  Identities=12%  Similarity=0.004  Sum_probs=81.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .+..+++++.||.|+..|..+|+.+..+....++.+-   ....+. ..++.++.||.++.+|..+++...+. .-...|
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~---~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~v  268 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL---GYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLH-LHESCV  268 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE---EECTTS-SEEEEEETTSCEEEEETTSSCEEEEC-CCSSCE
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEE---EECCCC-CEEEEEcCCCcEEEEECCCCCeEEEc-CCccce
Confidence            5678999999999999999999999999877777654   112222 45666677999999999988763332 222222


Q ss_pred             hhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecC
Q 007199          127 RRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       127 ~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                       .+..++.||. +++|+.++.++..|..+|+.++.....
T Consensus       269 -~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  306 (337)
T 1gxr_A          269 -LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES  306 (337)
T ss_dssp             -EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             -eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCC
Confidence             2233444554 667999999999999999999776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0003  Score=71.64  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=102.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCC-----CeEEEEecCCCcee-eecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDED-----WELYFHSKRFGKMK-KLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~D-----G~lY~~~~~~G~l~-~~~~  120 (613)
                      .+..+++++.||.|+..|..+|+.+.++....++.+-.   ...+. ..++.++.|     |.++.+|..++... .+..
T Consensus        85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~  160 (369)
T 3zwl_B           85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE---FSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTK  160 (369)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE---ECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE---EccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence            56789999999999999999999999998777766541   12222 355555557     99999998665430 0000


Q ss_pred             cHHH------------HhhhCceeecCC-cEEEEeecceEEEEECCC-CcEEEEEecCCCCCCCCCcCCCCCccccCCCc
Q 007199          121 SAEE------------YIRRMPYISKDG-GVTLGAMKTSVFLVDVKS-GRVVDNYVLDFSASTPGFQSDENKHVVPVDGY  186 (613)
Q Consensus       121 ~~~~------------~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~t-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (613)
                      ....            .+ .+..++.|| .+++|+.++.++..|..+ ++.+..+.......    .      .+     
T Consensus       161 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v----~------~~-----  224 (369)
T 3zwl_B          161 VSEEPIHKIITHEGLDAA-TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI----S------DM-----  224 (369)
T ss_dssp             ECSSCSEEEECCTTCCCE-EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE----E------EE-----
T ss_pred             cccceeeeccCCcCccce-eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce----e------EE-----
Confidence            0000            11 112233344 577899999999999999 78888886432110    0      00     


Q ss_pred             ccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          187 EELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       187 ~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                        .++|       ....++.+..|+.|+.+|.++++....+.
T Consensus       225 --~~~~-------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          225 --QFSP-------DLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             --EECT-------TSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --EECC-------CCCEEEEecCCceEEEEECCCCceeeeec
Confidence              1111       13478889999999999999999988876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.64  E-value=0.00035  Score=74.54  Aligned_cols=155  Identities=11%  Similarity=0.090  Sum_probs=101.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .++.++.|+.||+|+..|..+|+.+.++.. ..+|..-.-  .......+++.++.||.++.+|..++.. ........ 
T Consensus       172 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~  248 (464)
T 3v7d_B          172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEHD  248 (464)
T ss_dssp             STTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--EESSSCEEEEEEETTSCEEEEECCCCCC-C------CC
T ss_pred             CCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEE--ecCCCCCEEEEEcCCCcEEEeeCCCCcc-cccccccCC
Confidence            356999999999999999999999999974 344543211  1111235777788899999999987654 11110000 


Q ss_pred             -----------------Hh-hhCc--ee-ecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccC
Q 007199          125 -----------------YI-RRMP--YI-SKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPV  183 (613)
Q Consensus       125 -----------------~v-~~sP--~~-~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (613)
                                       +. ...+  ++ .++..+++|+.|++++..|..+|+.+..+.......           .+  
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~--  315 (464)
T 3v7d_B          249 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI-----------YS--  315 (464)
T ss_dssp             SSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-----------EE--
T ss_pred             cceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE-----------EE--
Confidence                             00 0011  11 224467889999999999999999999885322100           00  


Q ss_pred             CCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          184 DGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                          -..++       ....++.|..|+.|+.+|.++|+....+.
T Consensus       316 ----~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          316 ----TIYDH-------ERKRCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             ----EEEET-------TTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ----EEEcC-------CCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence                01111       13488999999999999999998887664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.63  E-value=0.0003  Score=73.83  Aligned_cols=154  Identities=8%  Similarity=0.020  Sum_probs=97.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEec--CCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDV--DEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~--~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .+..+++|+.||.|+..|..+++..+++... .++.+-   ....+...+++.+  +.||.++.+|..+|+. ...+...
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~---~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~~~~  303 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV---AWCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVDAG  303 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEE---EECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEEECS
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEE---EECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEEeCC
Confidence            5678999999999999999999999998643 344332   1122222455554  3799999999999887 5555544


Q ss_pred             HHhhhCceeecCCc-EEE--EeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          124 EYIRRMPYISKDGG-VTL--GAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       124 ~~v~~sP~~~~dg~-v~~--Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                      ..|. +..++.||. +++  |+.++.++..|..+|+....+...+...  ++.      .+       .++|       .
T Consensus       304 ~~v~-~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~--~v~------~~-------~~s~-------d  360 (401)
T 4aez_A          304 SQVT-SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT--RVL------YS-------ALSP-------D  360 (401)
T ss_dssp             SCEE-EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS--CCC------EE-------EECT-------T
T ss_pred             CcEE-EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC--CEE------EE-------EECC-------C
Confidence            3332 234444664 444  6689999999999998877665322110  000      00       1111       1


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ...|+.+..|+.|+.+|..+|+..+..
T Consensus       361 g~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          361 GRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             SSEEEEECTTSEEEEEECCC-------
T ss_pred             CCEEEEEeCCCcEEEEECCCCcccccc
Confidence            347888999999999999998877653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.63  E-value=0.00044  Score=72.43  Aligned_cols=150  Identities=13%  Similarity=0.078  Sum_probs=96.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCC-------eeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee
Q 007199           47 EPDVALVAALDGTIHLVDTKLG-------KIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL  118 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG-------~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~  118 (613)
                      .+.++++|+.||+|+..|..++       +...++.. ..+|..-   ....+...+++.++.||.++.+|..+|+. ..
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~---~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~  168 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV---AWHPTAQNVLLSAGCDNVILVWDVGTGAA-VL  168 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE---EECSSBTTEEEEEETTSCEEEEETTTTEE-EE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE---EECcCCCCEEEEEcCCCEEEEEECCCCCc-cE
Confidence            5678999999999999999998       45566653 2333332   11222224677777899999999998877 44


Q ss_pred             cc--cH-HHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccc
Q 007199          119 SS--SA-EEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGV  194 (613)
Q Consensus       119 ~~--~~-~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (613)
                      .+  .. ...| .+..++.|| .+++|+.|++++..|..+|+.+..+.......        ....+       ...+  
T Consensus       169 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~-------~~~~--  230 (402)
T 2aq5_A          169 TLGPDVHPDTI-YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--------RPVHA-------VFVS--  230 (402)
T ss_dssp             EECTTTCCSCE-EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS--------SCCEE-------EECS--
T ss_pred             EEecCCCCCce-EEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC--------cceEE-------EEcC--
Confidence            44  21 1122 122334354 57789999999999999999999884222100        00000       1111  


Q ss_pred             ccccccccEEEEE---eeeeEEEEEeCCCCce
Q 007199          195 GNLKRIRQLVYIM---RTDYVLQSTSQDSGEV  223 (613)
Q Consensus       195 ~~~~~~~~~v~ig---r~d~~l~a~d~~~G~~  223 (613)
                           .+..++.|   ..|+.|+.+|.++++.
T Consensus       231 -----~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          231 -----EGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             -----TTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             -----CCcEEEEeccCCCCceEEEEcCccccC
Confidence                 12366667   6899999999988765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.62  E-value=0.0005  Score=72.74  Aligned_cols=153  Identities=14%  Similarity=0.082  Sum_probs=100.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .++.++.|+.||+|+..|..+|+.+-+|.... .+..-   ....+ ..+++.++.||.+..+|..++.. .-.+.... 
T Consensus       203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~---~~~~~-g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~  277 (410)
T 1vyh_C          203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV---RPNQD-GTLIASCSNDQTVRVWVVATKEC-KAELREHRH  277 (410)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE---EECTT-SSEEEEEETTSCEEEEETTTCCE-EEEECCCSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE---EECCC-CCEEEEEcCCCeEEEEECCCCce-eeEecCCCc
Confidence            56789999999999999999999988886433 33322   11222 24677788899999999988766 32222111 


Q ss_pred             Hhh---hCce----------------e-ecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCC
Q 007199          125 YIR---RMPY----------------I-SKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVD  184 (613)
Q Consensus       125 ~v~---~sP~----------------~-~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (613)
                      .|.   -+|-                . .....+++|+.|+++...|..+|+.+..+.......    .      .+   
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v----~------~v---  344 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV----R------GV---  344 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----E------EE---
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE----E------EE---
Confidence            110   0110                0 002347789999999999999999998886432110    0      00   


Q ss_pred             CcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          185 GYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                          .++|       ....|+-|..|++|+.+|.++++....+.
T Consensus       345 ----~~~~-------~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          345 ----LFHS-------GGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             ----EECS-------SSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             ----EEcC-------CCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence                1111       13478889999999999999887765543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.59  E-value=0.00086  Score=69.37  Aligned_cols=153  Identities=18%  Similarity=0.129  Sum_probs=101.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+..++.|+.||+|+..|..+|+.+-++... .++..-.-.  +.....+++.++.||.++.+|.++|+. ...+... .
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~  241 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA--PSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHES  241 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC--CCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSS
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE--eCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCC
Confidence            4568999999999999999999999888643 344332111  111124777788899999999999887 3334322 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .|. +-.++.|| .+++|+.|+++...|..+++.+..+.......  +.       .+      -.++|       ....
T Consensus       242 ~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~--~~-------~~------~~~s~-------~g~~  298 (354)
T 2pbi_B          242 DVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF--GA-------SS------VDFSL-------SGRL  298 (354)
T ss_dssp             CEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS--CE-------EE------EEECT-------TSSE
T ss_pred             CeE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc--ce-------eE------EEEeC-------CCCE
Confidence            121 12233344 56689999999999999999887775332110  00       00      01111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~W  225 (613)
                      ++.|..|++|+.+|..+|+..-
T Consensus       299 l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          299 LFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             EEEEETTSCEEEEETTTCSEEE
T ss_pred             EEEEECCCcEEEEECCCCceEE
Confidence            8889999999999998887653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.56  E-value=0.00069  Score=69.49  Aligned_cols=152  Identities=11%  Similarity=0.059  Sum_probs=101.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeecccH--
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSSA--  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~--  122 (613)
                      .+..++.|+.||+|+..|..+|+...++.... ++.+-   ....+ ..+++.++.||.++.++..++.. .+.....  
T Consensus        66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~---~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~  141 (340)
T 1got_B           66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC---AYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAG  141 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEE---EECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEE---EECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence            56789999999999999999999999887543 34332   11122 24666677799999999876532 0111111  


Q ss_pred             -HHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          123 -EEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       123 -~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                       ...|.. -.+..|+.+++|+.|+++..-|..+|+.+..+.......    .      .+       .+.|       ..
T Consensus       142 h~~~v~~-~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v----~------~~-------~~~~-------~~  196 (340)
T 1got_B          142 HTGYLSC-CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV----M------SL-------SLAP-------DT  196 (340)
T ss_dssp             CSSCEEE-EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE----E------EE-------EECT-------TS
T ss_pred             CCccEEE-EEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce----E------EE-------EECC-------CC
Confidence             111211 123458889999999999999999999998885322100    0      00       1111       13


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ..++.|..|+.|+.+|.++|.....+
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~  222 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTF  222 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEE
Confidence            47888999999999999998876654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00017  Score=73.39  Aligned_cols=148  Identities=9%  Similarity=0.022  Sum_probs=98.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCC-CeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKL-GKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~t-G~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .+..+++|+.||.|+..|..+ ++.+.++.. ..+|.+-   ....+ ..+++.++.||.++.+|..+++. ...+....
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~---~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~  260 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM---QFSPD-LTYFITSSRDTNSFLVDVSTLQV-LKKYETDC  260 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE---EECTT-SSEEEEEETTSEEEEEETTTCCE-EEEEECSS
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE---EECCC-CCEEEEecCCceEEEEECCCCce-eeeecCCC
Confidence            557899999999999999999 899988875 3445433   11222 24666677799999999999888 55555333


Q ss_pred             HhhhCceeecCC-cEEEEeecc--------------eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccc
Q 007199          125 YIRRMPYISKDG-GVTLGAMKT--------------SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEEL  189 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~--------------~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (613)
                      .+.. .+++.++ .+++|+.++              .++..|..+|+.+..+........          .+       .
T Consensus       261 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~----------~~-------~  322 (369)
T 3zwl_B          261 PLNT-AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN----------TV-------A  322 (369)
T ss_dssp             CEEE-EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE----------EE-------E
T ss_pred             Ccee-EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE----------EE-------E
Confidence            3322 2333344 466787777              899999999999988864322100          00       0


Q ss_pred             cccccccccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          190 VESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       190 ~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      ++|       ....++.|..|+.|+.+|.+++...
T Consensus       323 ~s~-------~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          323 ISP-------QGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             ECT-------TSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             ECC-------CCCEEEEEcCCCeEEEEECccccch
Confidence            111       1337788888999988887665543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.54  E-value=0.00011  Score=76.97  Aligned_cols=153  Identities=10%  Similarity=-0.007  Sum_probs=104.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc-HHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS-AEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~-~~~~  125 (613)
                      .+..+++|+.||.|+..|..+++....+.....+...   ....+ ...++.++.||.++.+|..++.. ...+. -...
T Consensus        67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~---~~~~~-~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~  141 (420)
T 3vl1_A           67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVD---TAKLQ-MRRFILGTTEGDIKVLDSNFNLQ-REIDQAHVSE  141 (420)
T ss_dssp             EETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEE---EECSS-SCEEEEEETTSCEEEECTTSCEE-EEETTSSSSC
T ss_pred             cCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEE---EEecC-CCEEEEEECCCCEEEEeCCCcce-eeecccccCc
Confidence            5677899999999999999999988777654332221   11122 24666777799999999998877 33332 2222


Q ss_pred             hhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      | .+..++.|| .+++|+.|++++..|..+|+.+..+.......           .+      -.+.|       ....+
T Consensus       142 v-~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v-----------~~------~~~~~-------~~~~l  196 (420)
T 3vl1_A          142 I-TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV-----------TD------IAIID-------RGRNV  196 (420)
T ss_dssp             E-EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE-----------EE------EEEET-------TTTEE
T ss_pred             c-EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE-----------EE------EEEcC-------CCCEE
Confidence            3 223344455 57789999999999999999998886322110           00      01111       13478


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      +.|..|+.|+.+|.++|+..+.+..
T Consensus       197 ~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          197 LSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECB
T ss_pred             EEEcCCCcEEEeECCCCceeEEeec
Confidence            8999999999999999998887764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.52  E-value=0.00064  Score=68.53  Aligned_cols=155  Identities=10%  Similarity=0.023  Sum_probs=99.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeee-EEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIR-WSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~-W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-  123 (613)
                      .+..++.|+.||+|+.-|..++... =.+.. ..+|.+-   .........++.++.||.+..+|..++.. ...+... 
T Consensus       108 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v---~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~  183 (304)
T 2ynn_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV---AFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQ  183 (304)
T ss_dssp             SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE---EECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCC
T ss_pred             CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE---EECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCC
Confidence            5678999999999999998888443 33432 2334332   11111124677788899999999877655 2222211 


Q ss_pred             -HHh---hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          124 -EYI---RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       124 -~~v---~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                       ..+   .-+|. .++..+++|+.|+++..-|..+|+.+.++..-....    .      .+       .+.|       
T Consensus       184 ~~~v~~~~~~~~-~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v----~------~~-------~~~p-------  238 (304)
T 2ynn_A          184 ERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV----S------FA-------VFHP-------  238 (304)
T ss_dssp             TTCEEEEEECCS-TTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----E------EE-------EECS-------
T ss_pred             cCcEEEEEEEEc-CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE----E------EE-------EECC-------
Confidence             111   11111 113357789999999999999999998886432110    0      00       1111       


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      ....|+-|..|++|+.+|..+++...++...
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            1337888999999999999999988877543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.51  E-value=0.00073  Score=71.43  Aligned_cols=149  Identities=13%  Similarity=0.105  Sum_probs=101.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      ....++.|+.||+|+..|..+|+..-++... .+|..-   ....+ ..+++.++.||.+..+|..++.. ...+... .
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v---~~~~~-~~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~  193 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI---SFDHS-GKLLASCSADMTIKLWDFQGFEC-IRTMHGHDH  193 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEE---EECTT-SSEEEEEETTSCCCEEETTSSCE-EECCCCCSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEE---EEcCC-CCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCC
Confidence            4678999999999999999999999888742 344432   11222 24777788899999999988776 3333322 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .|. +-.++.|| .+++|+.|+++..-|..+|+.+..+.......           .        .+...   +  ....
T Consensus       194 ~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v-----------~--------~~~~~---~--~g~~  248 (410)
T 1vyh_C          194 NVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV-----------R--------MVRPN---Q--DGTL  248 (410)
T ss_dssp             CEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-----------E--------EEEEC---T--TSSE
T ss_pred             CEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE-----------E--------EEEEC---C--CCCE
Confidence            221 22233344 57789999999999999999998886432110           0        00000   0  1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~W  225 (613)
                      +..|..|+.|+.+|..++...-
T Consensus       249 l~s~s~D~~v~vwd~~~~~~~~  270 (410)
T 1vyh_C          249 IASCSNDQTVRVWVVATKECKA  270 (410)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEcCCCeEEEEECCCCceee
Confidence            8889999999999998887553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.51  E-value=0.0011  Score=66.78  Aligned_cols=156  Identities=10%  Similarity=0.042  Sum_probs=101.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .++.++.|+.||+|+..|..+|+.+.++... .+|.+-   ....+ ..+++-++.||.+..+|..++....-.+... .
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~---~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE---EECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE---EEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            5678999999999999999999999999753 344432   11112 2467778889999999988774322222221 1


Q ss_pred             HhhhCceee-cCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          125 YIRRMPYIS-KDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       125 ~v~~sP~~~-~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      .|. +-.++ .|+ .+.+|+.|+++..-|..+++....+..+....   .     . .+       ...+.   +  ...
T Consensus       142 ~v~-~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~---v-----~-~~-------~~~~~---~--~~~  199 (304)
T 2ynn_A          142 FVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG---V-----N-YV-------DYYPL---P--DKP  199 (304)
T ss_dssp             CEE-EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC---E-----E-EE-------EECCS---T--TCC
T ss_pred             cEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc---E-----E-EE-------EEEEc---C--CCC
Confidence            121 11222 244 47789999999999999988777665432110   0     0 00       00000   0  123


Q ss_pred             EEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      .++.|..|++|+.+|.++|+....+.
T Consensus       200 ~l~s~s~D~~i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          200 YMITASDDLTIKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCeEEEEeCCCCccceeeC
Confidence            78889999999999999998776654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.50  E-value=0.00075  Score=69.75  Aligned_cols=159  Identities=11%  Similarity=0.042  Sum_probs=101.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc----
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS----  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~----  121 (613)
                      ....+++|+.||.|+..|..+|+...++.. ..+|..-   ....+...+++.++.||.++.+|.+++......+.    
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~---~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  231 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV---SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG  231 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE---EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE---EECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence            445899999999999999999999999974 3444432   12222223677778899999999977652122211    


Q ss_pred             ------------HHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccc
Q 007199          122 ------------AEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEE  188 (613)
Q Consensus       122 ------------~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (613)
                                  -...| .+..++.|| .+++|+.++.++..|..+|+....+.......  .  ..... .        
T Consensus       232 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~--~~~~~-~--------  297 (408)
T 4a11_B          232 KKSQAVESANTAHNGKV-NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN--S--KKGLK-F--------  297 (408)
T ss_dssp             CSCCCTTTSSCSCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC--C--SSCCC-C--------
T ss_pred             ccceeeccccccccCce-eEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccc--c--cccce-e--------
Confidence                        01111 112344455 47789999999999999998765543221110  0  00000 0        


Q ss_pred             ccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          189 LVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       189 ~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ....      .....++++..|+.|+.+|..+|+....+.
T Consensus       298 ~~~~------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          298 TVSC------GCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECC------SSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEec------CCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            0000      024478888999999999999999887664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.46  E-value=0.0012  Score=68.11  Aligned_cols=166  Identities=12%  Similarity=0.037  Sum_probs=101.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-HH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-EY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~~  125 (613)
                      ....++.++.||.|+..|..+|+....+....++....-.+... ...+++.++.||.++.+|..+|+. ...+... ..
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~  188 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST-KHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQE  188 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCS-SCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCC-CCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCc
Confidence            44588899999999999999999999998777765542221111 124667777799999999998876 3344322 12


Q ss_pred             hhhCceeecCCc--EEEEeecceEEEEECCCCc-EEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          126 IRRMPYISKDGG--VTLGAMKTSVFLVDVKSGR-VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       126 v~~sP~~~~dg~--v~~Gs~~~~~~~vD~~tG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      | .+..++.|+.  +++|+.+++++..|..+++ ....+.................    ..+....+.   ..+  ...
T Consensus       189 v-~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~---~~~--~~~  258 (408)
T 4a11_B          189 I-LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA----HNGKVNGLC---FTS--DGL  258 (408)
T ss_dssp             E-EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS----CSSCEEEEE---ECT--TSS
T ss_pred             E-EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc----ccCceeEEE---EcC--CCC
Confidence            2 2233444654  6789999999999999887 4443322111100000000000    000000000   001  134


Q ss_pred             EEEEEeeeeEEEEEeCCCCceE
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      .++.|..|+.|+.+|..+|+..
T Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          259 HLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             EEEEEETTSCEEEEETTTCCBC
T ss_pred             EEEEecCCCeEEEEECCCCccc
Confidence            7888999999999999988753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.45  E-value=0.0015  Score=68.17  Aligned_cols=158  Identities=16%  Similarity=0.135  Sum_probs=100.2

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCC------ceeeccccccCCCCCeEEEecCCCCeEEEEecCCC-ceeeecc
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGR------PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFG-KMKKLSS  120 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~------~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G-~l~~~~~  120 (613)
                      +..++.|+.||+|+.-|..+|+.+..+....      .+.+-   ........+++-++.||.+..+|.+.+ .. ...+
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~---~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-~~~~  245 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL---SINSLNANMFISGSCDTTVRLWDLRITSRA-VRTY  245 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE---EECSSSCCEEEEEETTSCEEEEETTTTCCC-CEEE
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE---EeecCCCCEEEEEECCCeEEEEECCCCCcc-eEEE
Confidence            4568999999999999999999998874321      23221   111112357788888999999998643 33 2222


Q ss_pred             cHH-HHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          121 SAE-EYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       121 ~~~-~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                      ... ..|. +-.++.|| .+.+|+.|+++..-|..+|+.+..+........     .... .+.    .-.++|      
T Consensus       246 ~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-----~~~~-~v~----~~~~s~------  308 (380)
T 3iz6_a          246 HGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND-----NELP-IVT----SVAFSI------  308 (380)
T ss_dssp             CCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC-----CSSC-SCS----EEEECS------
T ss_pred             CCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc-----cccC-ceE----EEEECC------
Confidence            211 1221 22334455 466799999999999999999988864322100     0000 000    001111      


Q ss_pred             ccccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          199 RIRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       199 ~~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                       ....++.|..|+.|+.+|..+++...++
T Consensus       309 -~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          309 -SGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             -SSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             -CCCEEEEEECCCCEEEEECCCCceEEEE
Confidence             1448889999999999999988877655

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00095  Score=69.48  Aligned_cols=148  Identities=9%  Similarity=-0.021  Sum_probs=98.3

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCC-------CceeeccccccCCCCCeEEEecCCCC---eEEEEecCCCceee
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTG-------RPIYSSYQASFNSNASEFYLDVDEDW---ELYFHSKRFGKMKK  117 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-------~~i~s~~~~~~~~~~~~~~i~~~~DG---~lY~~~~~~G~l~~  117 (613)
                      ..++++++.||.|+..|..+++.+.++...       .++.+-   ....+...+++.++.||   .++.+|.+++....
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~  254 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV---EWHPKNSTRVATATGSDNDPSILIWDLRNANTPL  254 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE---EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE---EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc
Confidence            578899999999999999999999999863       344332   12222224677777798   99999998874313


Q ss_pred             eccc-H-HHHhhhCceeec-C-CcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccc
Q 007199          118 LSSS-A-EEYIRRMPYISK-D-GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESG  193 (613)
Q Consensus       118 ~~~~-~-~~~v~~sP~~~~-d-g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (613)
                      ..+. . ...| .+..++. | ..+++|+.|++++..|..+|+.+..+.........         .        .+.|.
T Consensus       255 ~~~~~~~~~~v-~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~---------~--------~~s~~  316 (416)
T 2pm9_A          255 QTLNQGHQKGI-LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK---------T--------KFAPE  316 (416)
T ss_dssp             BCCCSCCSSCE-EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC---------E--------EECTT
T ss_pred             EEeecCccCce-eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE---------E--------EECCC
Confidence            3332 1 1122 2223332 4 45778999999999999999999988743221100         0        11110


Q ss_pred             cccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          194 VGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       194 ~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                            ....++.+..|+.|+.+|..++.
T Consensus       317 ------~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          317 ------APDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             ------CTTEEEECCSSSEEEEEESCCCC
T ss_pred             ------CCCEEEEEecCCcEEEEEccCCC
Confidence                  01478889999999998887665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.45  E-value=0.0017  Score=68.01  Aligned_cols=165  Identities=13%  Similarity=0.128  Sum_probs=95.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH--
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE--  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~--  124 (613)
                      .+..++.|+.||+|+..|..+|+...++.....+..-  ...+.+ ..+++.++.||.++.+|..+|.+ .-.+....  
T Consensus       176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~  251 (393)
T 1erj_A          176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV--AVSPGD-GKYIAAGSLDRAVRVWDSETGFL-VERLDSENES  251 (393)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE--EECSTT-CCEEEEEETTSCEEEEETTTCCE-EEEEC-----
T ss_pred             CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEE--EEECCC-CCEEEEEcCCCcEEEEECCCCcE-EEeecccccC
Confidence            5678999999999999999999999999876665543  111212 24677788899999999998876 32332111  


Q ss_pred             ------HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccc
Q 007199          125 ------YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNL  197 (613)
Q Consensus       125 ------~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (613)
                            .| .+-.++.|| .+++|+.|+++..-|..+++............   . .   .......+.  ...-+ ..+
T Consensus       252 ~~~h~~~v-~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~---~-~---~~~~~h~~~--v~~~~-~~~  320 (393)
T 1erj_A          252 GTGHKDSV-YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT---C-E---VTYIGHKDF--VLSVA-TTQ  320 (393)
T ss_dssp             -CCCSSCE-EEEEECTTSSEEEEEETTSEEEEEEC---------------C---E-E---EEEECCSSC--EEEEE-ECG
T ss_pred             CCCCCCCE-EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc---c-e---EEEecccCc--EEEEE-ECC
Confidence                  11 122344465 46789999999999998766543221110000   0 0   000000000  00000 001


Q ss_pred             cccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          198 KRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       198 ~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                        .+..|+-|..|+.|+.+|..+|+....+.
T Consensus       321 --~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          321 --NDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             --GGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence              13478889999999999999998876544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.44  E-value=0.00055  Score=69.44  Aligned_cols=159  Identities=7%  Similarity=-0.054  Sum_probs=100.7

Q ss_pred             CCEEEEEecCCcEEEEeCCCCe-eeEEeeCC-Cceeecccc---ccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           48 PDVALVAALDGTIHLVDTKLGK-IRWSFGTG-RPIYSSYQA---SFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~-~~W~~~~~-~~i~s~~~~---~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      +..+++|+.||.|+..|..+++ .+.++... .+|..-.-.   ....+ ...++.++.||.++.+|..++......+..
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence            5889999999999999999998 88888643 344332100   11222 246667777999999999887621333322


Q ss_pred             HH-----Hhhh---CceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccc
Q 007199          123 EE-----YIRR---MPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESG  193 (613)
Q Consensus       123 ~~-----~v~~---sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (613)
                      ..     .+.+   +|.++.|+ .+++|+.++.++..|..+|+..+.......+.+           +       .++|.
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~-----------~-------~~~~~  220 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCS-----------L-------EFDRK  220 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE-----------E-------EESCS
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEE-----------E-------EcCCC
Confidence            11     1111   11133344 566799999999999999999887654433210           0       11110


Q ss_pred             cccccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          194 VGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       194 ~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      ..    ..+.++.|..|+.|+.+|.++++....+.+
T Consensus       221 ~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          221 DI----SMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             SS----SCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             CC----CCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence            00    134889999999999999877766555543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.39  E-value=0.0011  Score=72.89  Aligned_cols=153  Identities=16%  Similarity=0.139  Sum_probs=104.2

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeCC-C---ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc-----
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGTG-R---PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS-----  120 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~~-~---~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~-----  120 (613)
                      .++.++.||.|+..|..+++.+.++... .   +|.+-   ....+...+++.++.||.++.+|..+|+. ...+     
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~  250 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV---EFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQE  250 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE---EECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTB
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE---EECCCCCCEEEEEeCCCeEEEEECCCCCE-eEEeccccc
Confidence            8999999999999999999999999753 2   45433   12222124666667799999999999887 4444     


Q ss_pred             cHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          121 SAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       121 ~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                      .-...|.. -.+++...+++|+.++++...|..+|+.+..+.......      ...  .+      .+.-+       .
T Consensus       251 ~~~~~v~~-~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~------~~~--~~------~~~~~-------~  308 (615)
T 1pgu_A          251 PVQGGIFA-LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL------GNQ--QV------GVVAT-------G  308 (615)
T ss_dssp             CCCSCEEE-EEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG------GGC--EE------EEEEE-------E
T ss_pred             ccCCceEE-EEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc------cCc--ee------EEEeC-------C
Confidence            22222322 233423457789999999999999999999997653110      000  00      00100       2


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ++.++.|..|+.|+.+|..+++....+.
T Consensus       309 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~  336 (615)
T 1pgu_A          309 NGRIISLSLDGTLNFYELGHDEVLKTIS  336 (615)
T ss_dssp             TTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred             CCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence            4588999999999999998877766553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.34  E-value=0.0018  Score=65.25  Aligned_cols=152  Identities=11%  Similarity=0.002  Sum_probs=100.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC--CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG--RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~--~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-  123 (613)
                      .+..++.|+.||.++..|...+...-....+  ..+...  .........+++.++.|+.++.+|..+++. ...+... 
T Consensus       139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~  215 (340)
T 4aow_A          139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV--RFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHT  215 (340)
T ss_dssp             TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE--EECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCS
T ss_pred             cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce--EEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCC
Confidence            5678889999999999998766554333222  222221  111222234667778899999999998887 4443321 


Q ss_pred             HHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          124 EYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       124 ~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      ..|. +-+++.|| .+++|+.|+++...|..+++.+..+.....+..          .        ...        .++
T Consensus       216 ~~v~-~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~----------~--------~~~--------~~~  268 (340)
T 4aow_A          216 GYLN-TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA----------L--------CFS--------PNR  268 (340)
T ss_dssp             SCEE-EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE----------E--------EEC--------SSS
T ss_pred             CcEE-EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe----------e--------ecC--------CCC
Confidence            1221 22344455 466799999999999999999998875543210          0        111        134


Q ss_pred             EEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      .++.+..|+.|+.+|.+++...+.+.
T Consensus       269 ~~~~~~~d~~i~iwd~~~~~~~~~~~  294 (340)
T 4aow_A          269 YWLCAATGPSIKIWDLEGKIIVDELK  294 (340)
T ss_dssp             SEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             ceeeccCCCEEEEEECCCCeEEEecc
Confidence            67888999999999999988887765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.33  E-value=0.0015  Score=68.52  Aligned_cols=154  Identities=18%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..++.|+.||+|+..|..+|+.+-.+.. ..+|.+-   ....+. ..++.++.||.++.+|..+|+. ...+.....
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~---~~~p~~-~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~  208 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL---DYFPSG-DKLVSGSGDRTVRIWDLRTGQC-SLTLSIEDG  208 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTTS-SEEEEEETTSEEEEEETTTTEE-EEEEECSSC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEE---EEcCCC-CEEEEecCCCcEEEEECCCCee-EEEEEcCCC
Confidence            567899999999999999999999888864 3345443   111222 3666777899999999999887 555544433


Q ss_pred             hhhCceeec-CC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          126 IRRMPYISK-DG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       126 v~~sP~~~~-dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      +.. -.++. || .+.+|+.|+++...|..+|+.+..+.......  ..... ....+       .++|       ....
T Consensus       209 v~~-~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~--~~h~~-~v~~v-------~~~~-------~g~~  270 (393)
T 1erj_A          209 VTT-VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKD-SVYSV-------VFTR-------DGQS  270 (393)
T ss_dssp             EEE-EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSS-CEEEE-------EECT-------TSSE
T ss_pred             cEE-EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCC--CCCCC-CEEEE-------EECC-------CCCE
Confidence            322 22222 55 46679999999999999999998875322100  00000 00000       1111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCce
Q 007199          204 VYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~  223 (613)
                      |+.|..|+.|+.+|..++..
T Consensus       271 l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             EEEEETTSEEEEEEC-----
T ss_pred             EEEEeCCCEEEEEECCCCCC
Confidence            88899999999999876554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.32  E-value=0.0021  Score=68.13  Aligned_cols=148  Identities=13%  Similarity=0.206  Sum_probs=90.8

Q ss_pred             CCCCEEEEEecCC---cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCe--EEEEecCCCceeeecc
Q 007199           46 PEPDVALVAALDG---TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWE--LYFHSKRFGKMKKLSS  120 (613)
Q Consensus        46 ~~~~~v~v~t~dG---~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~--lY~~~~~~G~l~~~~~  120 (613)
                      +.+..+++++.|+   .|+..|..+|+.+.-......+.+.   ....++..+++..+.||.  ||.+|..+|+.+++.-
T Consensus       188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~---~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~  264 (415)
T 2hqs_A          188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAP---AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD  264 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEE---EECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCE---EEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC
Confidence            3667788888875   9999999999987433333333332   123333345555655665  9999999888744332


Q ss_pred             cHHHHhhhCceeecCCc-EEEEeecc---eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          121 SAEEYIRRMPYISKDGG-VTLGAMKT---SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       121 ~~~~~v~~sP~~~~dg~-v~~Gs~~~---~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                        ......+|.++.||. +++++.++   .+|.+|..+|+... +.........                 ..++|.   
T Consensus       265 --~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~-----------------~~~spd---  321 (415)
T 2hqs_A          265 --GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD-----------------ADVSSD---  321 (415)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE-----------------EEECTT---
T ss_pred             --CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCcccC-----------------eEECCC---
Confidence              222335677887886 66676543   79999999998643 2111110000                 011111   


Q ss_pred             ccccccEEEEEeee---eEEEEEeCCCCce
Q 007199          197 LKRIRQLVYIMRTD---YVLQSTSQDSGEV  223 (613)
Q Consensus       197 ~~~~~~~v~igr~d---~~l~a~d~~~G~~  223 (613)
                          ...|++++.+   +.|+.+|.++|+.
T Consensus       322 ----G~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          322 ----GKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             ----SSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ----CCEEEEEECcCCceEEEEEECCCCCE
Confidence                2366777664   7999999998876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.30  E-value=0.0022  Score=64.65  Aligned_cols=114  Identities=11%  Similarity=0.015  Sum_probs=77.2

Q ss_pred             CCEEEE-EecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALV-AALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v-~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .+.+|+ +..+|+|+.+|..+|+.+..+..+..-. .  .....+...+|+.+..|+.||.+|..+|++....+......
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~--~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~   85 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-D--TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS   85 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-E--EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-e--EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC
Confidence            355555 4567899999999999999887643211 1  12333444578888889999999999988622223333222


Q ss_pred             hhCceeecCCc-EEEEeecc---eEEEEECCCCcEEEEEecC
Q 007199          127 RRMPYISKDGG-VTLGAMKT---SVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       127 ~~sP~~~~dg~-v~~Gs~~~---~~~~vD~~tG~~~~~~~~~  164 (613)
                      .....++.||. +|++..++   +++.+|..+|+++..+..+
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  127 (331)
T 3u4y_A           86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP  127 (331)
T ss_dssp             CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred             ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC
Confidence            22255666776 66555553   8999999999999887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.27  E-value=0.00059  Score=69.25  Aligned_cols=110  Identities=10%  Similarity=-0.005  Sum_probs=74.3

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc----
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS----  121 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~----  121 (613)
                      ..+..+++|+.||.|+..|..+++.++......++.+-.-.+...+ ...++.++.||.++.+|..+++. ...+.    
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~  255 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDMRTQHP-TKGFASVSE  255 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEEEEEET-TTEEEEEEE
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeCcCCCc-ccceeeecc
Confidence            4678899999999999999999999998877777765411110002 24666677799999999877654 21111    


Q ss_pred             --HHHHhhhCceeecCCc--EEEEeecceEEEEECCCCcEE
Q 007199          122 --AEEYIRRMPYISKDGG--VTLGAMKTSVFLVDVKSGRVV  158 (613)
Q Consensus       122 --~~~~v~~sP~~~~dg~--v~~Gs~~~~~~~vD~~tG~~~  158 (613)
                        -...| .+..++.||.  +++|+.|+.++..|..++...
T Consensus       256 ~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          256 KAHKSTV-WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             ECCSSCE-EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCCcCCE-EEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence              11122 2233455664  778999999999998877544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.25  E-value=0.00094  Score=67.88  Aligned_cols=155  Identities=6%  Similarity=-0.063  Sum_probs=98.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC------CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT------GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~------~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~  120 (613)
                      .+..+++++.||.|+..|..+|+.+..+..      +..+.+-.-.+.......+++.++.||.++.+|..+|+. ...+
T Consensus        33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~  111 (366)
T 3k26_A           33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-IKHY  111 (366)
T ss_dssp             TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-EEEE
T ss_pred             CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-eeee
Confidence            357799999999999999999998887762      133433210101111124677777899999999998887 4444


Q ss_pred             cH-HHHhhhCceeec-CC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccc
Q 007199          121 SA-EEYIRRMPYISK-DG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNL  197 (613)
Q Consensus       121 ~~-~~~v~~sP~~~~-dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (613)
                      .. ...|. +-.++. |+ .+++|+.|++++..|..+|+.+..+..-.... .+.       .+      -..+|     
T Consensus       112 ~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v-------~~------~~~~~-----  171 (366)
T 3k26_A          112 VGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-DEV-------LS------ADYDL-----  171 (366)
T ss_dssp             ESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS-SCE-------EE------EEECT-----
T ss_pred             cCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc-Cce-------eE------EEECC-----
Confidence            32 22222 222332 44 57789999999999999999999884211110 000       00      00111     


Q ss_pred             cccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          198 KRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       198 ~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                        ....++.|..|+.|+.+|.++++..
T Consensus       172 --~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          172 --LGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             --TSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             --CCCEEEEecCCCCEEEEECCCCccc
Confidence              1347888999999999998876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.24  E-value=0.0012  Score=75.64  Aligned_cols=155  Identities=11%  Similarity=0.073  Sum_probs=105.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+..+++|+.||.|+..|..+|+.+.++.. ..+|..-  . ...+ ..+++.++.||.++.+|..+|+. ...+... .
T Consensus        24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~--~-~s~~-~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~   98 (814)
T 3mkq_A           24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAG--K-FIAR-KNWIIVGSDDFRIRVFNYNTGEK-VVDFEAHPD   98 (814)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--E-EEGG-GTEEEEEETTSEEEEEETTTCCE-EEEEECCSS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEE--E-EeCC-CCEEEEEeCCCeEEEEECCCCcE-EEEEecCCC
Confidence            568899999999999999999999999984 3455443  1 1111 13566667799999999999887 4444322 2


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCC-cEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSG-RVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      .| .+..++.|| .+++|+.++++...|..+| .....+.......           .+      -..+|.      ...
T Consensus        99 ~v-~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v-----------~~------~~~~p~------~~~  154 (814)
T 3mkq_A           99 YI-RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV-----------MC------VAFNPK------DPS  154 (814)
T ss_dssp             CE-EEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE-----------EE------EEEETT------EEE
T ss_pred             CE-EEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE-----------EE------EEEEcC------CCC
Confidence            22 234455566 5778999999999999998 5555554221100           00      011110      134


Q ss_pred             EEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      .++.|..|+.|+.+|..++...+.+...
T Consensus       155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~  182 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (814)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             EEEEEeCCCeEEEEECCCCcceeEEecC
Confidence            7888999999999999988888877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.24  E-value=0.0019  Score=77.98  Aligned_cols=157  Identities=10%  Similarity=0.068  Sum_probs=108.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..+++|+.||+|+..|..+|+.+.++.. ..+|.+-   ....++ .+++.++.||.++.+|..+|+. ...+.....
T Consensus       626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~---~~s~~~-~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~  700 (1249)
T 3sfz_A          626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC---AFSSDD-SYIATCSADKKVKIWDSATGKL-VHTYDEHSE  700 (1249)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EECTTS-SEEEEEETTSEEEEEETTTCCE-EEEEECCSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEE---EEecCC-CEEEEEeCCCeEEEEECCCCce-EEEEcCCCC
Confidence            567888999999999999999999999974 3344432   112222 4666677799999999999987 444433211


Q ss_pred             hhhCceeec--C-CcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          126 IRRMPYISK--D-GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       126 v~~sP~~~~--d-g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      -..+-.++.  + ..+++|+.|+++...|..+|+.+..+.......    .      .+       .++|       ...
T Consensus       701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v----~------~~-------~~sp-------~~~  756 (1249)
T 3sfz_A          701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV----N------HC-------RFSP-------DDE  756 (1249)
T ss_dssp             CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE----E------EE-------EECS-------STT
T ss_pred             cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE----E------EE-------EEec-------CCC
Confidence            111122332  2 246689999999999999999998875322110    0      00       1111       134


Q ss_pred             EEEEEeeeeEEEEEeCCCCceEEEEEecee
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                      .++.|..|+.|+.+|..+|.....+....+
T Consensus       757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  786 (1249)
T 3sfz_A          757 LLASCSADGTLRLWDVRSANERKSINVKRF  786 (1249)
T ss_dssp             EEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred             EEEEEECCCeEEEEeCCCCcccceeccccc
Confidence            889999999999999999999888876654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.23  E-value=0.0037  Score=63.37  Aligned_cols=154  Identities=12%  Similarity=0.134  Sum_probs=100.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..++.|+.||+|+.-|..+|+.+-++.. ..+|.+-   ....+ ...++.++.||.+..+|.+...+..+.- -...
T Consensus        76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~---~~~~~-~~~l~s~s~D~~i~vwd~~~~~~~~~~~-h~~~  150 (319)
T 3frx_A           76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKK-ASMIISGSRDKTIKVWTIKGQCLATLLG-HNDW  150 (319)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE---EECTT-SCEEEEEETTSCEEEEETTSCEEEEECC-CSSC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE---EEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEec-cCCc
Confidence            567899999999999999999999988864 3345442   11122 2467778889999999987544322211 1111


Q ss_pred             ---hhhCcee--ecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          126 ---IRRMPYI--SKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       126 ---v~~sP~~--~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                         +.-+|..  ..|+ .++.|+.|+++..-|..+++....+..-....    .      .+       .++|       
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v----~------~~-------~~sp-------  206 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI----N------TL-------TASP-------  206 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE----E------EE-------EECT-------
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE----E------EE-------EEcC-------
Confidence               1122221  1133 57789999999999999999988775322100    0      00       1111       


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      ....|..|..|+.|+.+|..+++....+..
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            134788899999999999999998887754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.21  E-value=0.0019  Score=64.18  Aligned_cols=113  Identities=13%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             CCCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeecccHH
Q 007199           46 PEPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSSAE  123 (613)
Q Consensus        46 ~~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~~  123 (613)
                      +.++.+|+.|. ++.++.+|+.|++++=+|+.++  .+-   .+..+...+|+... ++.|+.+|+.+.++ ..++....
T Consensus        94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--eG~---glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~  167 (262)
T 3nol_A           94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--EGW---GLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAH  167 (262)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC---CEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEET
T ss_pred             EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--Cce---EEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccC
Confidence            36789999986 7899999999999999998754  111   11122345777665 78899999998877 22333211


Q ss_pred             -HHhhh--CceeecCCcEEEEee-cceEEEEECCCCcEEEEEecCC
Q 007199          124 -EYIRR--MPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       124 -~~v~~--sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                       ..+..  --... ||.||+..+ ++.++.||++||+++.+.+..+
T Consensus       168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~  212 (262)
T 3nol_A          168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG  212 (262)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred             CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence             12211  00133 899999985 7889999999999999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.21  E-value=0.0055  Score=60.58  Aligned_cols=153  Identities=8%  Similarity=0.096  Sum_probs=94.4

Q ss_pred             CCCEEEEEec--CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAAL--DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~--dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .++.+|+++.  ++.|+.+| .+|+.++++.... ...+.....+.+. .+|+....++.|+.+|.. |+. ...+....
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~-~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~  161 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI-LQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNV-LHKFGCSK  161 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT-CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE-EEEEECTT
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc-CCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCE-EEEeCCCC
Confidence            4688888885  89999999 7899999886432 1111111122222 488888878999999965 555 33332211


Q ss_pred             Hh--hhCceeecCCcEEEEe-ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          125 YI--RRMPYISKDGGVTLGA-MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       125 ~v--~~sP~~~~dg~v~~Gs-~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      ..  -..-+++.||.+|++. .++.++.+|+ +|+.++.+...+... .|.      ..        +++        .+
T Consensus       162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~-~p~------~i--------~~d--------~~  217 (286)
T 1q7f_A          162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN-YPI------GV--------GIN--------SN  217 (286)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSC-SEE------EE--------EEC--------TT
T ss_pred             ccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccC-CCc------EE--------EEC--------CC
Confidence            11  1223456688899875 5789999997 688888875432110 010      00        111        14


Q ss_pred             cEEEEEeee-e-EEEEEeCCCCceEEEEEe
Q 007199          202 QLVYIMRTD-Y-VLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       202 ~~v~igr~d-~-~l~a~d~~~G~~~Wn~t~  229 (613)
                      +.+|++... . .|+.+|+ +|+.++.+..
T Consensus       218 G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~  246 (286)
T 1q7f_A          218 GEILIADNHNNFNLTIFTQ-DGQLISALES  246 (286)
T ss_dssp             CCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEECC-CCCEEEEEcc
Confidence            577887654 4 8999996 5887777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.18  E-value=0.00074  Score=70.04  Aligned_cols=143  Identities=14%  Similarity=-0.011  Sum_probs=90.5

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCC---CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTG---RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~---~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      .+++.++.||+|+..|..+|+..-.+...   .++.+-   ....+...+++.++.||.++.+|..+|+. ...+... .
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v---~~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~  270 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV---TWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQ  270 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE---EECTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSS
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccch---hhhhcccceEEEeecccceeEEECCCCcE-eEEEeccce
Confidence            47788999999999999999877655432   223221   11222234677778899999999998877 3333322 1


Q ss_pred             HhhhCceeecCC--cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          125 YIRRMPYISKDG--GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       125 ~v~~sP~~~~dg--~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      .|. +-+++-||  .+..|+.|++++.-|..+|+++....-.+.+.           .+       .++|.      .+.
T Consensus       271 ~v~-~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~-----------~v-------afsP~------d~~  325 (357)
T 4g56_B          271 NIT-GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVT-----------GV-------AWSPL------DHS  325 (357)
T ss_dssp             CEE-EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEE-----------EE-------EECSS------STT
T ss_pred             eEE-EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEE-----------EE-------EEeCC------CCC
Confidence            221 22344354  36679999999999999999987763222111           00       11111      123


Q ss_pred             EEEEEeeeeEEEEEeCCC
Q 007199          203 LVYIMRTDYVLQSTSQDS  220 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~  220 (613)
                      .+.-+..|++|+.+|..+
T Consensus       326 ~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          326 KFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEEEEETTSCEEEEECC-
T ss_pred             EEEEEcCCCeEEEEECCC
Confidence            667788999999988654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.16  E-value=0.0026  Score=64.83  Aligned_cols=154  Identities=7%  Similarity=-0.051  Sum_probs=97.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC---CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce----eeec
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT---GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM----KKLS  119 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~---~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l----~~~~  119 (613)
                      .+..+++++.||.|+..|..+++..-.+..   ..++..-   ....+. ..++.++.||.++.+|..++..    +...
T Consensus        63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  138 (372)
T 1k8k_C           63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV---RWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK  138 (372)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE---EECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEE---EECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence            567899999999999999999987666542   2344332   112222 4666667799999998877662    1111


Q ss_pred             ccHHHHhhhCceeecCC-cEEEEeecceEEEEEC------------------CCCcEEEEEecCCCCCCCCCcCCCCCcc
Q 007199          120 SSAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDV------------------KSGRVVDNYVLDFSASTPGFQSDENKHV  180 (613)
Q Consensus       120 ~~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~------------------~tG~~~~~~~~~~~~~~~~~~~~~~~~~  180 (613)
                      ..-...|. +..++.|+ .+++|+.++.++..|.                  .+|+.+..+.......           .
T Consensus       139 ~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----------~  206 (372)
T 1k8k_C          139 KPIRSTVL-SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV-----------H  206 (372)
T ss_dssp             TTCCSCEE-EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE-----------E
T ss_pred             cccCCCee-EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE-----------E
Confidence            11111221 22233355 5778999999999994                  4777777765221100           0


Q ss_pred             ccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          181 VPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      +      -.++|       ....++.+..|+.|+.+|.++|+....+..
T Consensus       207 ~------~~~~~-------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          207 G------VCFSA-------NGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             E------EEECS-------SSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             E------EEECC-------CCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            0      01111       134889999999999999999998877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.15  E-value=0.00048  Score=83.29  Aligned_cols=151  Identities=13%  Similarity=0.117  Sum_probs=104.3

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      +....+++|+.||.|+..|..+|+...++... .+|.+-   ....++ .+++.++.||.++.+|..+|.. .....-..
T Consensus       971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l---~~s~dg-~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~ 1045 (1249)
T 3sfz_A          971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---QFTADG-KTLISSSEDSVIQVWNWQTGDY-VFLQAHQE 1045 (1249)
T ss_dssp             TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE---EECSSS-SCEEEECSSSBEEEEETTTTEE-ECCBCCSS
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE---EECCCC-CEEEEEcCCCEEEEEECCCCce-EEEecCCC
Confidence            36789999999999999999999999887643 233322   111222 3566677899999999999887 33322222


Q ss_pred             HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          125 YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      .|. +..++.|+.+++|+.+++++..|..+|+....+.........         .        .++|       ....+
T Consensus      1046 ~v~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~---------~--------~~s~-------d~~~l 1100 (1249)
T 3sfz_A         1046 TVK-DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS---------C--------AISS-------DATKF 1100 (1249)
T ss_dssp             CEE-EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCC---------E--------EECS-------SSSSC
T ss_pred             cEE-EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEE---------E--------EECC-------CCCEE
Confidence            232 223455888999999999999999999999988643321100         0        1111       12367


Q ss_pred             EEEeeeeEEEEEeCCCCceEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      +.|..|++|+.+|..+|+....
T Consensus      1101 ~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A         1101 SSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp             EEECCSSCCCEECSSSSSCSBC
T ss_pred             EEEcCCCcEEEEECCCcceeee
Confidence            8899999999999888775543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.002  Score=68.68  Aligned_cols=156  Identities=10%  Similarity=0.006  Sum_probs=101.0

Q ss_pred             CCCEE-EEEecCCcEEEEeCC--CCeeeEEeeC---CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceee-e-
Q 007199           47 EPDVA-LVAALDGTIHLVDTK--LGKIRWSFGT---GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKK-L-  118 (613)
Q Consensus        47 ~~~~v-~v~t~dG~l~ald~~--tG~~~W~~~~---~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~-~-  118 (613)
                      .+..+ ++|+.||+|+..|..  +|+.+-.+..   +..+.+-   ....+. ..++.++.||.+|.++..++.... . 
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~---~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~  188 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI---SIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQ  188 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE---EECTTS-SEEEEEETTSEEEEEETTSCCCSSCCC
T ss_pred             CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE---EEcCCC-CEEEEEeCCCcEEEEecCCcccccccc
Confidence            45564 678899999999988  8888877742   2333332   112222 355566679999999998776522 1 


Q ss_pred             -cccHH-HHhhhCceeecC---C-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccc
Q 007199          119 -SSSAE-EYIRRMPYISKD---G-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVES  192 (613)
Q Consensus       119 -~~~~~-~~v~~sP~~~~d---g-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (613)
                       .+... ..| .+-.++.|   + .+++|+.|++++..|..+|+.+..+-.+...   ++       .+.      .++ 
T Consensus       189 ~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~---~v-------~~~------~~s-  250 (450)
T 2vdu_B          189 EPILGHVSML-TDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH---FV-------SSI------CCG-  250 (450)
T ss_dssp             CCSEECSSCE-EEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS---CE-------EEE------EEC-
T ss_pred             eeeecccCce-EEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC---ce-------EEE------EEC-
Confidence             11111 112 12234556   6 5778999999999999999998875433210   00       000      010 


Q ss_pred             ccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          193 GVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       193 ~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                             ....++.|..|+.|+.+|..+|+.+..+...+
T Consensus       251 -------d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  282 (450)
T 2vdu_B          251 -------KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS  282 (450)
T ss_dssp             -------STTEEEEEESSSEEEEEETTTCCEEEEEECHH
T ss_pred             -------CCCEEEEEeCCCeEEEEECCCCcEeeeecchh
Confidence                   13488899999999999999999888887654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0023  Score=67.49  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=100.5

Q ss_pred             CCCEEEEEecCCcEEEEeCC---CCeeeEEeeCCCceeeccc------------cccCCCCCeEEEecCCCCeEEEEecC
Q 007199           47 EPDVALVAALDGTIHLVDTK---LGKIRWSFGTGRPIYSSYQ------------ASFNSNASEFYLDVDEDWELYFHSKR  111 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~---tG~~~W~~~~~~~i~s~~~------------~~~~~~~~~~~i~~~~DG~lY~~~~~  111 (613)
                      .++.+++|+.||+|+..|..   +|+..-.+... ++..-.-            .........+++.++.||.++.+|..
T Consensus       122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  200 (437)
T 3gre_A          122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR  200 (437)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            56789999999999999874   66655544311 2211100            00011113567777889999999999


Q ss_pred             CCceeeecccH---HHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcc
Q 007199          112 FGKMKKLSSSA---EEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYE  187 (613)
Q Consensus       112 ~G~l~~~~~~~---~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (613)
                      +++. ...+..   ...|. +-+++.|| .+++|+.|+++...|..+|+.+..+......   ++..     .       
T Consensus       201 ~~~~-~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~-----~-------  263 (437)
T 3gre_A          201 TLER-LQIIENSPRHGAVS-SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA---PITH-----V-------  263 (437)
T ss_dssp             TCCE-EEEEECCGGGCCEE-EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE---EEEE-----E-------
T ss_pred             CCee-eEEEccCCCCCceE-EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC---ceEE-----E-------
Confidence            9887 555543   22222 22344455 4667999999999999999999988643210   0000     0       


Q ss_pred             cccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          188 ELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                       ...|... +  ....++.|..|+.|+.+|..+|+....+.-
T Consensus       264 -~~~~~~s-~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (437)
T 3gre_A          264 -EVCQFYG-K--NSVIVVGGSSKTFLTIWNFVKGHCQYAFIN  301 (437)
T ss_dssp             -EECTTTC-T--TEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred             -EeccccC-C--CccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence             0011100 0  123788899999999999999987776653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.14  E-value=0.0022  Score=65.09  Aligned_cols=148  Identities=9%  Similarity=0.052  Sum_probs=94.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee----CCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG----TGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~----~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      ....+++|+.||.|+..|..+|+.+..+.    ...+|.+-   ....+ ...++.++.||.++.+|..+++. .  ..+
T Consensus       127 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~---~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~--~~~  199 (366)
T 3k26_A          127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA---DYDLL-GEKIMSCGMDHSLKLWRINSKRM-M--NAI  199 (366)
T ss_dssp             CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE---EECTT-SSEEEEEETTSCEEEEESCSHHH-H--HHH
T ss_pred             CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE---EECCC-CCEEEEecCCCCEEEEECCCCcc-c--ccc
Confidence            45789999999999999999999999983    23445443   11122 24666677799999999987765 2  112


Q ss_pred             HHHhh--------------------------hC----ceeecCCcEEEEeecceEEEEECCCCcE--------------E
Q 007199          123 EEYIR--------------------------RM----PYISKDGGVTLGAMKTSVFLVDVKSGRV--------------V  158 (613)
Q Consensus       123 ~~~v~--------------------------~s----P~~~~dg~v~~Gs~~~~~~~vD~~tG~~--------------~  158 (613)
                      ...+.                          ..    -.++ +..+++|+.++.+...|..+++.              +
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence            21111                          11    1123 45678899999999999988864              4


Q ss_pred             EEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          159 DNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      ..+.......    ..     .        .++|..     ....|+.|..|+.|+.+|..+|+..
T Consensus       279 ~~~~~~~~~v----~~-----~--------~~s~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          279 GRFDYSQCDI----WY-----M--------RFSMDF-----WQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             EEEECSSCCS----SC-----C--------CCEECT-----TSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             ccccccCCcE----EE-----E--------EEcCCC-----CCcEEEEEecCCcEEEEECCCCCCc
Confidence            4443221100    00     0        011100     0347888999999999999887643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.11  E-value=0.002  Score=73.68  Aligned_cols=156  Identities=10%  Similarity=0.004  Sum_probs=102.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCC-eeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLG-KIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG-~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-  123 (613)
                      .+..+++|+.||+|+..|..++ ...-.+.. ..++.+-   .........++.++.||.++.+|..++.. ...+... 
T Consensus       108 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~  183 (814)
T 3mkq_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV---AFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQ  183 (814)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE---EEETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE---EEEcCCCCEEEEEeCCCeEEEEECCCCcc-eeEEecCC
Confidence            5568999999999999998887 44445543 2344432   11111124677777899999999987766 3333222 


Q ss_pred             -HHhhhCceee---cCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          124 -EYIRRMPYIS---KDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       124 -~~v~~sP~~~---~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                       ..+. ....+   ++..+++|+.++++...|..+|+.+..+.......           .+      -...|       
T Consensus       184 ~~~v~-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v-----------~~------~~~~~-------  238 (814)
T 3mkq_A          184 ERGVN-YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-----------SF------AVFHP-------  238 (814)
T ss_dssp             TTCCC-EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE-----------EE------EEECS-------
T ss_pred             CCCEE-EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE-----------EE------EEEcC-------
Confidence             2221 12222   24467789999999999999999999886432110           00      01111       


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      ....++.|..|+.|+.+|..+|+..+.+....
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence            13478889999999999999999988876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.11  E-value=0.0024  Score=70.06  Aligned_cols=153  Identities=15%  Similarity=0.059  Sum_probs=102.1

Q ss_pred             CCCEEEEEecC----CcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc
Q 007199           47 EPDVALVAALD----GTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        47 ~~~~v~v~t~d----G~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      .+..+++++.|    |.|+..|  +|+.+.++.... +|..-   ....+....++.++.||.++.+|..+++. ...+.
T Consensus       127 ~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~  200 (615)
T 1pgu_A          127 EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC---HLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDR  200 (615)
T ss_dssp             TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE---EECSSSSCEEEEEETTTEEEEEETTTBEE-EEEEC
T ss_pred             CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE---EECCCCCcEEEEEeCCCcEEEEeCCCcce-eeeec
Confidence            56678888877    7888888  788888886432 34332   12222223677778899999999998877 44443


Q ss_pred             HHH----HhhhCceeecC-C-cEEEEeecceEEEEECCCCcEEEEEec---CCCCCCCCCcCCCCCccccCCCccccccc
Q 007199          122 AEE----YIRRMPYISKD-G-GVTLGAMKTSVFLVDVKSGRVVDNYVL---DFSASTPGFQSDENKHVVPVDGYEELVES  192 (613)
Q Consensus       122 ~~~----~v~~sP~~~~d-g-~v~~Gs~~~~~~~vD~~tG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (613)
                      ...    .| .+..++.| | .+++|+.+++++..|..+|+.+..+..   ...   .+.       .        .+. 
T Consensus       201 ~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v-------~--------~~~-  260 (615)
T 1pgu_A          201 THHKQGSFV-RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ---GGI-------F--------ALS-  260 (615)
T ss_dssp             SSSCTTCCE-EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC---SCE-------E--------EEE-
T ss_pred             ccCCCCceE-EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC---Cce-------E--------EEE-
Confidence            321    12 22334445 5 467799999999999999999998832   110   000       0        000 


Q ss_pred             ccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          193 GVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       193 ~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                       ..    ....++.+..|+.|+.+|..+|+....+...
T Consensus       261 -~~----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          261 -WL----DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             -ES----SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             -Ec----CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence             00    1347888999999999999999998888765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.09  E-value=0.0043  Score=64.09  Aligned_cols=165  Identities=10%  Similarity=0.103  Sum_probs=100.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCC----Cceeeeccc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF----GKMKKLSSS  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~----G~l~~~~~~  121 (613)
                      .+..+++|+.||.|+..|. +|+.++++.. ..+|.+-   ....+...+++.++.||.++.+|..+    +.. ...+.
T Consensus       174 ~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~---~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~  248 (383)
T 3ei3_B          174 SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA---EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY-IAEMP  248 (383)
T ss_dssp             TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE---EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EEEEE
T ss_pred             CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE---EECCCCCCEEEEEeCCCEEEEEeCCCCCcccce-EEEec
Confidence            5688999999999999998 7999999875 3344432   12222223777788899999999987    444 22222


Q ss_pred             HHHHhhhCceeec-CC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCC---CCCcCCCCCccccCCCccccccccccc
Q 007199          122 AEEYIRRMPYISK-DG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSAST---PGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       122 ~~~~v~~sP~~~~-dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      -...| .+..++. || .+++|+.|++++..|..+|+....+........   .+...    ...+...   .+..+.  
T Consensus       249 ~~~~v-~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~---~~~~~~--  318 (383)
T 3ei3_B          249 HEKPV-NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA----TWHPMYD---LIVAGR--  318 (383)
T ss_dssp             CSSCE-EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC----EECSSSS---EEEEEC--
T ss_pred             CCCce-EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEE----eccCCCC---ceEEEe--
Confidence            22222 2233444 55 566799999999999999998877764321100   00000    0000000   000000  


Q ss_pred             ccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          197 LKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       197 ~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                        ..++.+ .|..|+.|+.+|..+|+.+..+..
T Consensus       319 --s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          319 --YPDDQL-LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             --BCCTTT-CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             --cCCccc-ccCCCCeEEEEecCCCceeeeecC
Confidence              012222 566899999999999998776653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.08  E-value=0.0022  Score=63.80  Aligned_cols=110  Identities=11%  Similarity=0.027  Sum_probs=79.4

Q ss_pred             CCCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           46 PEPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        46 ~~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      +.++.+|+.|. ++.++.+|+.|++++=+|+.++.=.+     +..+...+|+..+ ++.|+.+|+.+.++ .-...+..
T Consensus       103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwG-----Lt~Dg~~L~vSdG-s~~l~~iDp~T~~v-~~~I~V~~  175 (268)
T 3nok_A          103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWG-----LCYWNGKLVRSDG-GTMLTFHEPDGFAL-VGAVQVKL  175 (268)
T ss_dssp             ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCC-----EEEETTEEEEECS-SSEEEEECTTTCCE-EEEEECEE
T ss_pred             EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeE-----EecCCCEEEEECC-CCEEEEEcCCCCeE-EEEEEeCC
Confidence            46788999874 57899999999999999987432111     1122345777765 99999999999877 33333321


Q ss_pred             HhhhCce-------eecCCcEEEEee-cceEEEEECCCCcEEEEEecCC
Q 007199          125 YIRRMPY-------ISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       125 ~v~~sP~-------~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                        ...|+       .. ||.+|+..+ ++.+..||++||+++.+++..+
T Consensus       176 --~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~  221 (268)
T 3nok_A          176 --RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASA  221 (268)
T ss_dssp             --TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred             --CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence              11121       23 899999985 7789999999999999998753

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.08  E-value=0.00038  Score=72.51  Aligned_cols=76  Identities=12%  Similarity=0.141  Sum_probs=54.3

Q ss_pred             EeeeEeecCceEEEEEEeeCCcEEEEEEee--cc----chHHHHHHHHHHHhcCC-CCcceeEEEEEEeC---CEEEEEe
Q 007199          477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLV--KT----HHDVALKEIQNLIASDQ-HPNIVRWYGVESDQ---DFVYLSL  546 (613)
Q Consensus       477 ~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~--~~----~~~~~~~Ei~~L~~l~~-HpnIV~l~g~~~~~---~~~~LV~  546 (613)
                      ..+.|+.|.++.||+... .+..+++|+..  ..    ....+.+|.++|..+-. +..+++++.++.+.   +..|+||
T Consensus        42 ~~~~l~~G~sn~~y~v~~-~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVT-PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEEECCC-CCSCEEEEEC-SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             eEEEcCCcccceEEEEEE-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            456789999999998644 34678888876  32    23467889998887722 45688999988776   3589999


Q ss_pred             cCCCc-cH
Q 007199          547 ERCTC-SL  553 (613)
Q Consensus       547 E~~~G-sL  553 (613)
                      ||++| .+
T Consensus       121 e~v~G~~l  128 (359)
T 3dxp_A          121 EFVSGRVL  128 (359)
T ss_dssp             ECCCCBCC
T ss_pred             EecCCeec
Confidence            99997 55

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0022  Score=65.54  Aligned_cols=146  Identities=10%  Similarity=0.040  Sum_probs=89.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecC---------CCce-e
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKR---------FGKM-K  116 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~---------~G~l-~  116 (613)
                      .+.+++.|+.||+|+..|..+|+.+.++.. +++.+-     .... . ++-++.||.+..++..         ++.+ +
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~-----~~~~-~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTG-----GEHP-A-IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTT-----CCCC-S-EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceee-----eeCC-c-eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            567899999999999999999999999973 223221     0000 1 5667778888877654         4442 1


Q ss_pred             eecccHHHHh---hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccc
Q 007199          117 KLSSSAEEYI---RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESG  193 (613)
Q Consensus       117 ~~~~~~~~~v---~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (613)
                      .....-.+.|   .-+|... +..+.+|+.|+++...|..+|+....+......   +.       .+      -.+.| 
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~---~i-------~~------~~~~p-  180 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDV---EY-------SS------GVLHK-  180 (343)
T ss_dssp             EEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSC---CC-------CE------EEECT-
T ss_pred             EeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCC---ce-------EE------EEECC-
Confidence            1111111111   1122222 334566999999999999999997666332110   00       00      01111 


Q ss_pred             cccccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          194 VGNLKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       194 ~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                            ....+..|..|+.|+.+|.++|+..
T Consensus       181 ------dg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          181 ------DSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             ------TSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             ------CCCEEEEEcCCCEEEEEECCCCCCC
Confidence                  1336777999999999999988755

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.06  E-value=0.0066  Score=60.02  Aligned_cols=79  Identities=10%  Similarity=-0.045  Sum_probs=60.0

Q ss_pred             eEeecCce-EEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCc-cHHHH
Q 007199          480 EIAKGSNG-TVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC-SLNDL  556 (613)
Q Consensus       480 ~LG~G~fG-~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~G-sL~~~  556 (613)
                      .+..|..| .||+.. ..++..+.||+-.......+.+|...|..+-.+--+.++++++.+.+..++|||+++| ++.+.
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~  110 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQV  110 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHH
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcccccc
Confidence            34445555 688743 4456789999887766668889999998775555578899999999999999999998 77665


Q ss_pred             HH
Q 007199          557 IY  558 (613)
Q Consensus       557 L~  558 (613)
                      ..
T Consensus       111 ~~  112 (272)
T 4gkh_A          111 LE  112 (272)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.05  E-value=0.0041  Score=64.19  Aligned_cols=111  Identities=16%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.++.|+.||+|+..|..+|+.+-++.. ..+|.+-  . ...+ ...++.++.||.+..+|.++++. ...+.....
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v--~-~~p~-~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~  283 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV--R-YYPS-GDAFASGSDDATCRLYDLRADRE-VAIYSKESI  283 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--E-ECTT-SSEEEEEETTSCEEEEETTTTEE-EEEECCTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE--E-EeCC-CCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCc
Confidence            347899999999999999999999988864 3345432  1 1112 24677788899999999987765 333322211


Q ss_pred             hh--hCceeecCC-cEEEEeecceEEEEECCCCcEEEEEe
Q 007199          126 IR--RMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       126 v~--~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      ..  .+-.++.|| .+++|+.|++++.-|..+|+.+..+.
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~  323 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF  323 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence            11  122344455 46679999999999999999887764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.03  E-value=0.0018  Score=65.61  Aligned_cols=147  Identities=7%  Similarity=0.046  Sum_probs=99.4

Q ss_pred             CCEEEEEecCCcEEEEeCCC-Ceee-EEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           48 PDVALVAALDGTIHLVDTKL-GKIR-WSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~t-G~~~-W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      ...+++|+.||.|+..|..+ |+.. -.+.. ..+|.+-   ....+ ..+++.++.||.++.+|..+++.... ..-..
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~---~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~  128 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV---CWSDD-GSKVFTASCDKTAKMWDLSSNQAIQI-AQHDA  128 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEE---EECTT-SSEEEEEETTSEEEEEETTTTEEEEE-EECSS
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEE---EECcC-CCEEEEEcCCCcEEEEEcCCCCceee-ccccC
Confidence            37899999999999999887 6655 44442 3445443   11222 24666777799999999998887432 22222


Q ss_pred             HhhhCcee--ecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          125 YIRRMPYI--SKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       125 ~v~~sP~~--~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      .|.. -.+  +.|+. +++|+.|++++..|..+|+.+..+.......                    +.+       ...
T Consensus       129 ~v~~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------------------~~~-------~~~  180 (368)
T 3mmy_A          129 PVKT-IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY--------------------CAD-------VIY  180 (368)
T ss_dssp             CEEE-EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE--------------------EEE-------EET
T ss_pred             ceEE-EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce--------------------EEE-------ecC
Confidence            2322 222  44554 7789999999999999999999887543211                    011       123


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      +.++++..|+.++.+|.+++...+..
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~  206 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRR  206 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEE
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhh
Confidence            47899999999999999887766654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.02  E-value=0.0056  Score=67.57  Aligned_cols=156  Identities=12%  Similarity=-0.053  Sum_probs=100.0

Q ss_pred             CCCCEEEEEecCCcEEEEeC--CCCeeeEEeeCCCceeeccccccCC----CCCeEEEecCCCCeEEEEecCCCceeeec
Q 007199           46 PEPDVALVAALDGTIHLVDT--KLGKIRWSFGTGRPIYSSYQASFNS----NASEFYLDVDEDWELYFHSKRFGKMKKLS  119 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~--~tG~~~W~~~~~~~i~s~~~~~~~~----~~~~~~i~~~~DG~lY~~~~~~G~l~~~~  119 (613)
                      ..+..+|+++.||+|+.+|.  .||+.+-++..+....+-   .+..    +...+|+....|+++..+|..+++. ...
T Consensus       188 pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~v---a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~  263 (543)
T 1nir_A          188 ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV---ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQI  263 (543)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE---EECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEE
T ss_pred             CCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceE---EeCCCcCCCCCEEEEEEccCCeEEEEecccccc-cee
Confidence            36789999999999999999  899999999876544332   1233    4446777777799999999999887 333


Q ss_pred             ccHHHH-hh----------hCceeecCC-cEE-EEeecceEEEEECCCCcEEE--EEecCCCCCCCCCcCCCCCccccCC
Q 007199          120 SSAEEY-IR----------RMPYISKDG-GVT-LGAMKTSVFLVDVKSGRVVD--NYVLDFSASTPGFQSDENKHVVPVD  184 (613)
Q Consensus       120 ~~~~~~-v~----------~sP~~~~dg-~v~-~Gs~~~~~~~vD~~tG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  184 (613)
                      +.+... +.          .+-+++.|+ .+| ..+.++++..+|..+++.+.  ....+....      +         
T Consensus       264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~------~---------  328 (543)
T 1nir_A          264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLH------D---------  328 (543)
T ss_dssp             EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCC------C---------
T ss_pred             ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCcc------C---------
Confidence            333110 00          111223333 333 35567889999988877554  332211100      0         


Q ss_pred             CcccccccccccccccccEEEEEe-eeeEEEEEeCCCCceEEEEEec
Q 007199          185 GYEELVESGVGNLKRIRQLVYIMR-TDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~v~igr-~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                         ..++|.       ...+|++. .+.+|..+|.++|++..++..+
T Consensus       329 ---~~~spd-------g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          329 ---GGWDSS-------HRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             ---EEECTT-------SCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             ---ceECCC-------CCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence               012221       22466654 5789999999999998888764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.01  E-value=0.0033  Score=67.19  Aligned_cols=151  Identities=11%  Similarity=0.016  Sum_probs=100.0

Q ss_pred             CCCCEEEEEecC-----CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecC---------CCCeEEEEecC
Q 007199           46 PEPDVALVAALD-----GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD---------EDWELYFHSKR  111 (613)
Q Consensus        46 ~~~~~v~v~t~d-----G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~---------~DG~lY~~~~~  111 (613)
                      .....+||.+..     |+|+.+|..|+++++++++|..= .   ..+..|...+|+...         .++.+..+|..
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-g---ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-H---PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-E---EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-c---eEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            466889999875     69999999999999999987521 1   123344446777753         47899999999


Q ss_pred             CCceeeecccHH--H-H-hh---hCceeecCC-cEEEEee--cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccc
Q 007199          112 FGKMKKLSSSAE--E-Y-IR---RMPYISKDG-GVTLGAM--KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVV  181 (613)
Q Consensus       112 ~G~l~~~~~~~~--~-~-v~---~sP~~~~dg-~v~~Gs~--~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (613)
                      ++++ .-...++  . . +.   ..-.++.|| .+|+...  .+++..||..|++++.++..++..              
T Consensus       158 t~~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~--------------  222 (426)
T 3c75_H          158 TFLP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY--------------  222 (426)
T ss_dssp             TCCE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE--------------
T ss_pred             CCcE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce--------------
Confidence            9988 3222222  0 0 00   122456576 6999875  578999999999999998764321              


Q ss_pred             cCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          182 PVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                             .+.|.      .....+.-..|+.+..+|..+|++.|..+
T Consensus       223 -------~~~p~------g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          223 -------HIFPA------SPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             -------EEEEE------ETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             -------eeccC------CCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence                   00000      01133334557777778888888887543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0071  Score=61.73  Aligned_cols=156  Identities=11%  Similarity=-0.018  Sum_probs=96.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC--CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH--
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG--RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA--  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~--~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~--  122 (613)
                      .+..++.|+.||+|+..|..+|+....+...  .++.+-   ....+ ..+++.++.||.++.+|.++|+.....+..  
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~---~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h  213 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG---VLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFPVDE  213 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEE---EECTT-SCEEEEECTTSCEEEEESSCTTSCCEECCCCT
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEE---EECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEeccC
Confidence            5678888999999999999999997766432  234332   11222 246777788999999999998873244444  


Q ss_pred             HHHhhhCceeecCCcEE-EEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          123 EEYIRRMPYISKDGGVT-LGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       123 ~~~v~~sP~~~~dg~v~-~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      ...|. +-.++.||..+ +|+ ++++..-|..+++....+..-.... .+.           ...--.++|.       .
T Consensus       214 ~~~v~-~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~-------g  272 (343)
T 3lrv_A          214 EAKIK-EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE-FKT-----------GTVTYDIDDS-------G  272 (343)
T ss_dssp             TSCEE-EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----------------CCEEEEECTT-------S
T ss_pred             CCCEE-EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc-ccc-----------cceEEEECCC-------C
Confidence            22222 22345566544 566 6699999999988765443210000 000           0000011111       2


Q ss_pred             cEEEEEee-eeEEEEEeCCCCceEEEE
Q 007199          202 QLVYIMRT-DYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       202 ~~v~igr~-d~~l~a~d~~~G~~~Wn~  227 (613)
                      ..+..+.. |+.++.++-+++...|..
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             CEEEEecCCCCcEEEEEEcccccceEe
Confidence            36666666 999999998888888987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.00  E-value=0.0044  Score=61.09  Aligned_cols=145  Identities=4%  Similarity=-0.022  Sum_probs=82.2

Q ss_pred             CCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ++.+|+++. ++.|+.+|. +|+.... ..............+.+ ..+|+....++.|+.++. +|....+.......-
T Consensus       151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  226 (299)
T 2z2n_A          151 DNALWFTENQNNAIGRITE-SGDITEF-KIPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITEFKIPTPNAR  226 (299)
T ss_dssp             TSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred             CCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEEEECCCCCCC
Confidence            467777765 588999998 8887642 11111111101112222 247888777899999999 788754433311100


Q ss_pred             hhCceeecCCcEEEEe-ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          127 RRMPYISKDGGVTLGA-MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs-~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      -.+-+++.||.+|++. ..+.++.+|+ +|++. .+....... .|.       .        +.      .  .++.+|
T Consensus       227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~-~~~-------~--------i~------~--~~g~l~  280 (299)
T 2z2n_A          227 PHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQIKSA-EPH-------G--------IC------F--DGETIW  280 (299)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECSSSSC-CEE-------E--------EE------E--CSSCEE
T ss_pred             ceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCCCCCC-ccc-------e--------EE------e--cCCCEE
Confidence            0122355688999998 5689999999 67654 443221100 000       0        00      0  145888


Q ss_pred             EEeeeeEEEEEeCCCCc
Q 007199          206 IMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~  222 (613)
                      ++...+.|..+|+++++
T Consensus       281 v~~~~~~l~~~~~~~~~  297 (299)
T 2z2n_A          281 FAMECDKIGKLTLIKDN  297 (299)
T ss_dssp             EEETTTEEEEEEEC---
T ss_pred             EEecCCcEEEEEcCccc
Confidence            88767788888887764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00098  Score=69.38  Aligned_cols=154  Identities=12%  Similarity=0.072  Sum_probs=97.1

Q ss_pred             CCEEEEEecCCcEEEEeCCCCe------eeEEee----CCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceee
Q 007199           48 PDVALVAALDGTIHLVDTKLGK------IRWSFG----TGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKK  117 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~------~~W~~~----~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~  117 (613)
                      +.+++.++.||+|+..|..+++      ....+.    ...++.+-   ....+...+++.++.||.++.+|..+++. .
T Consensus       126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~  201 (416)
T 2pm9_A          126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL---AWNQSLAHVFASAGSSNFASIWDLKAKKE-V  201 (416)
T ss_dssp             TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE---EECSSCTTEEEEESSSSCEEEEETTTTEE-E
T ss_pred             CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE---EeCCCCCcEEEEEcCCCCEEEEECCCCCc-c
Confidence            6789999999999999999988      544441    12233322   12222235777788899999999998877 4


Q ss_pred             ecccHH-------HHhhhCceeecCC--cEEEEeecc---eEEEEECCCC-cEEEEEecCCCCCCCCCcCCCCCccccCC
Q 007199          118 LSSSAE-------EYIRRMPYISKDG--GVTLGAMKT---SVFLVDVKSG-RVVDNYVLDFSASTPGFQSDENKHVVPVD  184 (613)
Q Consensus       118 ~~~~~~-------~~v~~sP~~~~dg--~v~~Gs~~~---~~~~vD~~tG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (613)
                      ..+...       ..| .+..++.||  .+++|+.++   +++..|..++ +.+..+..+..   .+.       .+   
T Consensus       202 ~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~---~~v-------~~---  267 (416)
T 2pm9_A          202 IHLSYTSPNSGIKQQL-SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ---KGI-------LS---  267 (416)
T ss_dssp             EEECCCCCSSCCCCCE-EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS---SCE-------EE---
T ss_pred             eEEeccccccccCCce-EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc---Cce-------eE---
Confidence            444432       222 223344454  577899888   9999999987 44443320110   000       00   


Q ss_pred             CcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          185 GYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                         -.++|.      ....++.|..|+.|+.+|.++|+.+..+.
T Consensus       268 ---~~~s~~------~~~~l~s~~~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          268 ---LDWCHQ------DEHLLLSSGRDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             ---EEECSS------CSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred             ---EEeCCC------CCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence               011110      13478889999999999999998877665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.00  E-value=0.0032  Score=66.30  Aligned_cols=147  Identities=10%  Similarity=0.036  Sum_probs=98.7

Q ss_pred             CCCCCEEEEEec-----CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecC---------CCCeEEEEec
Q 007199           45 PPEPDVALVAAL-----DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD---------EDWELYFHSK  110 (613)
Q Consensus        45 ~~~~~~v~v~t~-----dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~---------~DG~lY~~~~  110 (613)
                      ++....+||.+.     +++|+.+|..|+++++++++|..-.    ..+..+...+|+..+         .++.+..+|.
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~----va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN----PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE----EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc----EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            357899999987     6899999999999999999864311    112334445777653         4678999999


Q ss_pred             CCCceeeecccHHH----HhhhCc---eeecCC-cEEEEee--cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCcc
Q 007199          111 RFGKMKKLSSSAEE----YIRRMP---YISKDG-GVTLGAM--KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHV  180 (613)
Q Consensus       111 ~~G~l~~~~~~~~~----~v~~sP---~~~~dg-~v~~Gs~--~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~  180 (613)
                      .++++ .-...++.    .+...|   .++.|| .+|+...  ++++..||..|++++.+....+...            
T Consensus       117 ~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~------------  183 (386)
T 3sjl_D          117 VTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH------------  183 (386)
T ss_dssp             TTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE------------
T ss_pred             CCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce------------
Confidence            99887 33232221    011123   355577 5898874  6899999999999999997643210            


Q ss_pred             ccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCC-Cce
Q 007199          181 VPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDS-GEV  223 (613)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~-G~~  223 (613)
                               +.|.      ....++....|+.+..++..+ |++
T Consensus       184 ---------~~P~------g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          184 ---------IFPT------APDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             ---------EEEE------ETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             ---------eecC------CCceeEEECCCCCEEEEECCCCCeE
Confidence                     0010      122455667788888888865 666

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.99  E-value=0.0055  Score=60.40  Aligned_cols=146  Identities=7%  Similarity=0.054  Sum_probs=83.4

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCeeeE-EeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKIRW-SFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~~W-~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .++.+|+++. ++.|+.+|.. |+... .+..  ..........+.+. .+|+....++.||.++. +|+...+......
T Consensus       113 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~--~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  187 (300)
T 2qc5_A          113 LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN--KGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNA  187 (300)
T ss_dssp             STTCEEEEETTTTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             CCCCEEEEccCCCeEEEECCC-CCEEEccCCC--CCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCC
Confidence            3567888876 7899999988 77762 2221  11111111122222 47888777899999998 6777444332111


Q ss_pred             HhhhCceeecCCcEEEEeec-ceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDGGVTLGAMK-TSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~Gs~~-~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .--..-++..||.+|++... +.++.+|+ +|+....... .... .|.      ..        .++        .++.
T Consensus       188 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-~~~~-~~~------~i--------~~d--------~~g~  242 (300)
T 2qc5_A          188 AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP-TPNA-RPH------AI--------TAG--------KNSE  242 (300)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS-STTC-CEE------EE--------EEC--------STTC
T ss_pred             CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC-CCCC-Cce------EE--------EEC--------CCCC
Confidence            00112234558899998764 57999998 7887653211 1000 000      00        111        1457


Q ss_pred             EEEEee-eeEEEEEeCCCCce
Q 007199          204 VYIMRT-DYVLQSTSQDSGEV  223 (613)
Q Consensus       204 v~igr~-d~~l~a~d~~~G~~  223 (613)
                      ||++.. +..|+.+|+ +|..
T Consensus       243 l~v~~~~~~~i~~~~~-~g~~  262 (300)
T 2qc5_A          243 IWFTEWGANQIGRITN-DNTI  262 (300)
T ss_dssp             EEEEETTTTEEEEECT-TSCE
T ss_pred             EEEeccCCCeEEEECC-CCcE
Confidence            888875 488999998 5643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.98  E-value=0.00075  Score=68.19  Aligned_cols=160  Identities=13%  Similarity=0.053  Sum_probs=100.7

Q ss_pred             CCEEEEEecCCcEEEEeCCC---------CeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC-Cce--
Q 007199           48 PDVALVAALDGTIHLVDTKL---------GKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF-GKM--  115 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~t---------G~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~-G~l--  115 (613)
                      ++.+++++.||.|+..|..+         ++.++++.....+.+-   ....  +. ++.++.||.++.+|..+ +..  
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~--~~-l~~~~~d~~i~i~d~~~~~~~~~  185 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM---DTNS--SR-LIVGMNNSQVQWFRLPLCEDDNG  185 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE---EECS--SE-EEEEESTTEEEEEESSCCTTCCC
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEE---EecC--Cc-EEEEeCCCeEEEEECCccccccc
Confidence            68999999999999999998         8888888766666543   1111  23 55667799999999987 553  


Q ss_pred             eeecccHHHHhhhCceeec-C-CcEEEEeecceEEEEECCCC------cEEEEEecCCCCCCCCCcCCCCCccccCCCcc
Q 007199          116 KKLSSSAEEYIRRMPYISK-D-GGVTLGAMKTSVFLVDVKSG------RVVDNYVLDFSASTPGFQSDENKHVVPVDGYE  187 (613)
Q Consensus       116 ~~~~~~~~~~v~~sP~~~~-d-g~v~~Gs~~~~~~~vD~~tG------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (613)
                      ..........+ .+..++. | ..+++|+.++.++..|..++      +..+.+.........    .+....+.    .
T Consensus       186 ~~~~~~~~~~i-~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~----~  256 (342)
T 1yfq_A          186 TIEESGLKYQI-RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD----TNLAYPVN----S  256 (342)
T ss_dssp             EEEECSCSSCE-EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC----CSSCCCEE----E
T ss_pred             eeeecCCCCce-eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc----cccceeEE----E
Confidence            11222222222 1223343 3 45778999999999888776      777777643221000    00000000    0


Q ss_pred             cccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          188 ELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      -.++|       ....|+.|..|+.|+.+|..+|+....+..
T Consensus       257 ~~~s~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          257 IEFSP-------RHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EEECT-------TTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             EEEcC-------CCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence            01111       134788899999999999999998777543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.96  E-value=0.0082  Score=60.65  Aligned_cols=109  Identities=10%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             CCEEE-EEecCCcEEEEeCCCCeeeEEe-eCCCceeeccccccCCCCCeEEEecCCC----CeEEEEecCCCceeeeccc
Q 007199           48 PDVAL-VAALDGTIHLVDTKLGKIRWSF-GTGRPIYSSYQASFNSNASEFYLDVDED----WELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        48 ~~~v~-v~t~dG~l~ald~~tG~~~W~~-~~~~~i~s~~~~~~~~~~~~~~i~~~~D----G~lY~~~~~~G~l~~~~~~  121 (613)
                      ++.+| +++.+|.|+.+|..+|+..-.+ ..+..+.+-   ..+.+ ..+|+....+    +.||.+|..++.++.+-..
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i---~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~  130 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI---KIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIED  130 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEE---EECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceE---EECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence            34455 5678899999999999876433 222333322   11222 2477777656    7999999998877422111


Q ss_pred             HH-HHhhhCceeecCCcEEEEee-------cceEEEEECCCCcEEEE
Q 007199          122 AE-EYIRRMPYISKDGGVTLGAM-------KTSVFLVDVKSGRVVDN  160 (613)
Q Consensus       122 ~~-~~v~~sP~~~~dg~v~~Gs~-------~~~~~~vD~~tG~~~~~  160 (613)
                      .. ..--...+++.||.+|+++.       .+.+|.+|+++|++...
T Consensus       131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence            11 00001234566899999876       37899999998877643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.96  E-value=0.0043  Score=64.06  Aligned_cols=149  Identities=8%  Similarity=0.027  Sum_probs=95.2

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCC----CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTG----RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~----~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      ...+++++.||.|+..|..+ +..-.+...    .++.+-   ....+. .+++.++.||.++.+|.. |+. ...+...
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~---~~~~~~-~~l~~~~~d~~i~i~d~~-~~~-~~~~~~h  203 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCV---DVSVSR-QMLATGDSTGRLLLLGLD-GHE-IFKEKLH  203 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEE---EEETTT-TEEEEEETTSEEEEEETT-SCE-EEEEECS
T ss_pred             CCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEE---EECCCC-CEEEEECCCCCEEEEECC-CCE-EEEeccC
Confidence            36888899999999999885 444455432    223332   111222 366677779999999984 554 3333322


Q ss_pred             -HHhhhCceeecCC--cEEEEeecceEEEEECCC----CcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          124 -EYIRRMPYISKDG--GVTLGAMKTSVFLVDVKS----GRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       124 -~~v~~sP~~~~dg--~v~~Gs~~~~~~~vD~~t----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                       ..| .+..++.|+  .+++|+.|+++...|..+    ++.+..+.....+.           .+       .++|.   
T Consensus       204 ~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-----------~~-------~~s~~---  261 (383)
T 3ei3_B          204 KAKV-THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN-----------AA-------YFNPT---  261 (383)
T ss_dssp             SSCE-EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEE-----------EE-------EECTT---
T ss_pred             CCcE-EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceE-----------EE-------EEcCC---
Confidence             122 223345566  477899999999999999    77877775332211           00       11110   


Q ss_pred             ccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          197 LKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       197 ~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                         ....++.+..|+.|+.+|.++++....+.
T Consensus       262 ---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          262 ---DSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             ---TSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             ---CCCEEEEEcCCCcEEEEECCCCccccccc
Confidence               13478889999999999999988765554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.94  E-value=0.02  Score=59.95  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=27.5

Q ss_pred             CCCCCEEEEEec--CCcEEEEeCCCCeeeEE-eeCCCc
Q 007199           45 PPEPDVALVAAL--DGTIHLVDTKLGKIRWS-FGTGRP   79 (613)
Q Consensus        45 ~~~~~~v~v~t~--dG~l~ald~~tG~~~W~-~~~~~~   79 (613)
                      ++.+..+|+++.  ++.|+.+| .+|+++-+ +..++.
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~  169 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC  169 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce
Confidence            347789999985  47899999 99999998 776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.93  E-value=0.011  Score=62.42  Aligned_cols=151  Identities=15%  Similarity=0.174  Sum_probs=88.6

Q ss_pred             CCCEEE-EEecCCc--EEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCC--eEEEEecCCCceeeecc
Q 007199           47 EPDVAL-VAALDGT--IHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDW--ELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~-v~t~dG~--l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG--~lY~~~~~~G~l~~~~~  120 (613)
                      .+..++ .++.||.  ||.+|..+|+.. ++... ..+.+.   ....+...+++....||  .||.+|..+|+.+++..
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~---~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~  308 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEP---TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW  308 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEE---EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccce---EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec
Confidence            445444 5666665  999999999874 34332 233222   12233334555555455  89999999888755444


Q ss_pred             cHHHHhhhCceeecCCc-EEEEeec---ceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          121 SAEEYIRRMPYISKDGG-VTLGAMK---TSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       121 ~~~~~v~~sP~~~~dg~-v~~Gs~~---~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .. ..+ .+|.++.||. +++++.+   .+++.+|..+|++.. ..... ....+                 ..+|    
T Consensus       309 ~~-~~~-~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~-~~~~~-----------------~~sp----  363 (415)
T 2hqs_A          309 EG-SQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTF-LDETP-----------------SLAP----  363 (415)
T ss_dssp             SS-SEE-EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSS-SCEEE-----------------EECT----
T ss_pred             CC-Ccc-cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCC-CcCCe-----------------EEcC----
Confidence            32 222 3577777885 5556553   589999999998853 32111 10000                 1111    


Q ss_pred             ccccccEEEEEeeee---EEEEEeCCCCceEEEEEec
Q 007199          197 LKRIRQLVYIMRTDY---VLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       197 ~~~~~~~v~igr~d~---~l~a~d~~~G~~~Wn~t~~  230 (613)
                         ....|++++.|.   .|+.+|.+ |.....++-.
T Consensus       364 ---dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~  396 (415)
T 2hqs_A          364 ---NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT  396 (415)
T ss_dssp             ---TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS
T ss_pred             ---CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC
Confidence               123678888776   89999976 5555555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.91  E-value=0.0044  Score=60.88  Aligned_cols=112  Identities=14%  Similarity=0.035  Sum_probs=80.3

Q ss_pred             CCCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           46 PEPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        46 ~~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      +.++.+|+.|. ++.++.+|+.|++++=+|+.++.  . +-  +..+...+|+..+ ++.|+.+|+.+.++ .-..++..
T Consensus        72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~--G-wg--lt~dg~~L~vSdg-s~~l~~iDp~t~~~-~~~I~V~~  144 (243)
T 3mbr_X           72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE--G-WA--LTSDDSHLYMSDG-TAVIRKLDPDTLQQ-VGSIKVTA  144 (243)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC--C-CE--EEECSSCEEEECS-SSEEEEECTTTCCE-EEEEECEE
T ss_pred             EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC--c-eE--EeeCCCEEEEECC-CCeEEEEeCCCCeE-EEEEEEcc
Confidence            36788999874 67899999999999999987541  1 11  1122345787776 99999999999877 33333321


Q ss_pred             HhhhCcee------ecCCcEEEEee-cceEEEEECCCCcEEEEEecCCC
Q 007199          125 YIRRMPYI------SKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLDFS  166 (613)
Q Consensus       125 ~v~~sP~~------~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~~~  166 (613)
                        ...|+.      ..||.||+..+ ++.+..||++||+++-++...+-
T Consensus       145 --~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l  191 (243)
T 3mbr_X          145 --GGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQAL  191 (243)
T ss_dssp             --TTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGG
T ss_pred             --CCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcC
Confidence              112211      12899999985 78899999999999999987653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.90  E-value=0.018  Score=57.83  Aligned_cols=151  Identities=11%  Similarity=0.055  Sum_probs=91.7

Q ss_pred             CCCCEEEEEecCC---cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCe-EEEEecCC-Cceeeec-
Q 007199           46 PEPDVALVAALDG---TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWE-LYFHSKRF-GKMKKLS-  119 (613)
Q Consensus        46 ~~~~~v~v~t~dG---~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~-lY~~~~~~-G~l~~~~-  119 (613)
                      ..+..++++..+|   .|+.+|..+|+.+..+..+.....-   ....++..+|+.+..++. ++.++... |.+.... 
T Consensus        93 ~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~  169 (331)
T 3u4y_A           93 PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGI---AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ  169 (331)
T ss_dssp             TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEE---EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred             CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccce---EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence            3566777555553   8999999999999998775543322   123333347777776677 66666543 3331110 


Q ss_pred             --ccHHHHhhhCceeecCCc-EEEEe-ecceEEEEECCCCcE---EEEEecCCCCCCCCCcCCCCCccccCCCccccccc
Q 007199          120 --SSAEEYIRRMPYISKDGG-VTLGA-MKTSVFLVDVKSGRV---VDNYVLDFSASTPGFQSDENKHVVPVDGYEELVES  192 (613)
Q Consensus       120 --~~~~~~v~~sP~~~~dg~-v~~Gs-~~~~~~~vD~~tG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (613)
                        +..... .....++.||. +|+.. .++.++.+|..+|++   +..+..+.... .                 -.++|
T Consensus       170 ~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~-~-----------------~~~sp  230 (331)
T 3u4y_A          170 EFISGGTR-PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPG-T-----------------IVVSR  230 (331)
T ss_dssp             EEECSSSS-EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCC-C-----------------EEECT
T ss_pred             ccccCCCC-ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCc-e-----------------EEECC
Confidence              011111 12334666886 77755 688999999999998   77776442211 0                 01111


Q ss_pred             ccccccccccEEEEEe-eeeEEEEEeCCCCceEE
Q 007199          193 GVGNLKRIRQLVYIMR-TDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       193 ~~~~~~~~~~~v~igr-~d~~l~a~d~~~G~~~W  225 (613)
                      .       ...+|+.. .+..|+.+|..+|+...
T Consensus       231 d-------g~~l~v~~~~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          231 D-------GSTVYVLTESTVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             T-------SSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred             C-------CCEEEEEEcCCCEEEEEECCCCceee
Confidence            1       23577765 57889999999998744

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.89  E-value=0.0047  Score=64.49  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=91.4

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEee--C-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc-cHHH
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFG--T-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS-SAEE  124 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~--~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~-~~~~  124 (613)
                      .+++.|+.||+|+..|..+|+.+.++.  . ..+|.+-   ....+. ..++.++.||.++.+|.++|+. ...+ ....
T Consensus       145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~  219 (402)
T 2aq5_A          145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV---DWSRDG-ALICTSCRDKRVRVIEPRKGTV-VAEKDRPHE  219 (402)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE---EECTTS-SCEEEEETTSEEEEEETTTTEE-EEEEECSSC
T ss_pred             CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE---EECCCC-CEEEEEecCCcEEEEeCCCCce-eeeeccCCC
Confidence            689999999999999999999999993  2 3344433   112222 3566667799999999998877 3333 2211


Q ss_pred             -HhhhCceeecCCcEE-EE---eecceEEEEECCCCcE-EEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          125 -YIRRMPYISKDGGVT-LG---AMKTSVFLVDVKSGRV-VDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       125 -~v~~sP~~~~dg~v~-~G---s~~~~~~~vD~~tG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                       ....+..++.||.++ +|   +.++.++..|..+++. +.....+...   +.       .+      -..+|      
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~v-------~~------~~~s~------  277 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS---GV-------LL------PFFDP------  277 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS---SC-------EE------EEEET------
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCC---ce-------eE------EEEcC------
Confidence             111223344566544 56   6899999999999875 2222211110   00       00      01111      


Q ss_pred             ccccEEEE-EeeeeEEEEEeCCCCce
Q 007199          199 RIRQLVYI-MRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       199 ~~~~~v~i-gr~d~~l~a~d~~~G~~  223 (613)
                       ....+++ |..|+.|+.+|..+++.
T Consensus       278 -~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          278 -DTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             -TTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             -CCCEEEEEEcCCCeEEEEEecCCCc
Confidence             1235654 66799999999988874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.88  E-value=0.009  Score=58.80  Aligned_cols=145  Identities=11%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCee-eEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKI-RWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~-~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .++.+|+++. +|.|+.+|.. |+. .+.... +..+.+   ...+.+ ..+|+....++.||.+|+ +|+...+.....
T Consensus        66 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~---i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           66 SDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYG---ITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE---EEECTT-SCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             CCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCcee---eEECCC-CCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            4567777776 6889999876 553 233221 111111   111222 357887777899999999 777755543321


Q ss_pred             HHhhhCceeecCCcEEEEee-cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          124 EYIRRMPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       124 ~~v~~sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      ...-..-++..||.+|++.. .+.++.+|+ +|++... ....... .|.      ..        .++        .++
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~-~~~------~i--------~~~--------~~g  194 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTPAS-GPV------GI--------TKG--------NDD  194 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTC-CEE------EE--------EEC--------TTS
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCCCC-cce------eE--------EEC--------CCC
Confidence            11112223556889999775 578999999 8988753 2111100 000      00        111        134


Q ss_pred             EEEEEee-eeEEEEEeCCCCce
Q 007199          203 LVYIMRT-DYVLQSTSQDSGEV  223 (613)
Q Consensus       203 ~v~igr~-d~~l~a~d~~~G~~  223 (613)
                      .+|++.. ++.|+.+|+ +|..
T Consensus       195 ~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          195 ALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             SEEEEETTTTEEEEECT-TCCE
T ss_pred             CEEEEccCCceEEEECC-CCcE
Confidence            6888765 678999998 7763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.86  E-value=0.0077  Score=59.32  Aligned_cols=108  Identities=12%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.+|+++. +|.|+.+|.. |+... +..............+.+ ..+|+....++.|+.+|+. |+...+.......
T Consensus        29 ~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~  104 (300)
T 2qc5_A           29 EDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDS  104 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred             CCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-CCeEEecCCCCCC
Confidence            3577888884 7899999988 77653 322211111101112222 3577777778999999988 8775554432110


Q ss_pred             hhhCceeecCCcEEEEee-cceEEEEECCCCcEEE
Q 007199          126 IRRMPYISKDGGVTLGAM-KTSVFLVDVKSGRVVD  159 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~  159 (613)
                      --.+-++..+|.+|++.. .+.++.+|+. |++..
T Consensus       105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A          105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCccceECCCCCEEEEccCCCeEEEECCC-CCEEE
Confidence            011223455789999876 6789999998 88773

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.85  E-value=0.009  Score=58.99  Aligned_cols=112  Identities=11%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             CCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ++.+|+++ .++.|+.+|. +|+.++++........+.....+.+ ..+|+....++.|+.+|.. |+. ...+......
T Consensus       131 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~g~~  206 (286)
T 1q7f_A          131 KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYE-GQY-LRQIGGEGIT  206 (286)
T ss_dssp             TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETT-CCE-EEEESCTTTS
T ss_pred             CCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCC-CCE-EEEEccCCcc
Confidence            45577765 4688999995 6888888864332221111112222 2578887779999999975 554 3333322111


Q ss_pred             --hhCceeecCCcEEEEeecc--eEEEEECCCCcEEEEEecC
Q 007199          127 --RRMPYISKDGGVTLGAMKT--SVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       127 --~~sP~~~~dg~v~~Gs~~~--~~~~vD~~tG~~~~~~~~~  164 (613)
                        -..-+++.||.+|++....  .++.+|+ +|+.++.+...
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence              1123466689999987643  8999995 68888888754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0078  Score=64.02  Aligned_cols=114  Identities=9%  Similarity=0.061  Sum_probs=77.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeE----EeeC-CCceeeccccccCC-CCCeEEEecCCCCeEEEEecCCCceeeecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRW----SFGT-GRPIYSSYQASFNS-NASEFYLDVDEDWELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W----~~~~-~~~i~s~~~~~~~~-~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~  120 (613)
                      .+..+++|+.||.|+.+|..+++..-    .+.. ..+|.+-  ...++ +...+++.++.||.++.+|..+|+....-+
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV--HLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE--EEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEE--EEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence            56789999999999999998887653    3332 2333322  10111 113477777889999999999887622212


Q ss_pred             -cHHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          121 -SAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       121 -~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                       .-...| .+.+++ || .+++|+.|++++..|..+|+.+..+...
T Consensus       238 ~~h~~~v-~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  281 (450)
T 2vdu_B          238 FGHKHFV-SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYN  281 (450)
T ss_dssp             CCCSSCE-EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred             cCCCCce-EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence             112223 334566 55 5668999999999999999999988743

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.84  E-value=0.0082  Score=66.22  Aligned_cols=109  Identities=16%  Similarity=0.027  Sum_probs=75.9

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEec--CCCceeeecccHHHHhh
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSK--RFGKMKKLSSSAEEYIR  127 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~--~~G~l~~~~~~~~~~v~  127 (613)
                      +++.+..||+|..+|..||+++.++.++..+.+.   .+..+...+|+.+ .|+.++.+|.  .+++. .-.+..+... 
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v---~~spdg~~l~v~~-~d~~V~v~D~~~~t~~~-~~~i~~g~~p-  224 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHIS---RMSASGRYLLVIG-RDARIDMIDLWAKEPTK-VAEIKIGIEA-  224 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEE---EECTTSCEEEEEE-TTSEEEEEETTSSSCEE-EEEEECCSEE-
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcccceE---EECCCCCEEEEEC-CCCeEEEEECcCCCCcE-EEEEecCCCc-
Confidence            4444567899999999999999999987664322   2233333456555 4899999999  77766 3333332211 


Q ss_pred             hCceeec----CC-cEEEEe-ecceEEEEECCCCcEEEEEecC
Q 007199          128 RMPYISK----DG-GVTLGA-MKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       128 ~sP~~~~----dg-~v~~Gs-~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      .+-+++.    || .+|+++ .++++..+|..||+++.++...
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence            1223454    55 688888 5899999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.84  E-value=0.0074  Score=59.93  Aligned_cols=146  Identities=13%  Similarity=0.001  Sum_probs=89.1

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCC---ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGR---PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~---~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      ++++-+ ..|++|+.-|..||+.+-.+...+   .|.+-   ....+ ..+++.++.||.+..++..+|+. ...+....
T Consensus        36 ~~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v---~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~-~~~~~~h~  109 (318)
T 4ggc_A           36 GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSV---AWIKE-GNYLAVGTSSAEVQLWDVQQQKR-LRNMTSHS  109 (318)
T ss_dssp             TSEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEE---EECTT-SSEEEEEETTSEEEEEETTTTEE-EEEEECCS
T ss_pred             CCEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEE---EECCC-CCEEEEEECCCcEEEeecCCcee-EEEecCcc
Confidence            465554 569999999999999998886432   34332   11222 24667778899999999999987 44443322


Q ss_pred             HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          125 YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      ....+.... ...+..|+.++.+...+..++...-..-.+....   .       .+      ....       ..+..+
T Consensus       110 ~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~------~~~~-------~~~~~l  165 (318)
T 4ggc_A          110 ARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---V-------CG------LRWA-------PDGRHL  165 (318)
T ss_dssp             SCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC---E-------EE------EEEC-------TTSSEE
T ss_pred             ceEEEeecC-CCEEEEEecCCceEeeecCCCceeEEEEcCccCc---e-------EE------EEEc-------CCCCEE
Confidence            111111122 3456678899888888888775443322221100   0       00      0000       023478


Q ss_pred             EEEeeeeEEEEEeCCCCce
Q 007199          205 YIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~  223 (613)
                      +.+..|+.|+.+|..+|+.
T Consensus       166 ~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          166 ASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             EEEETTSCEEEEESSCBTT
T ss_pred             EEEecCcceeEEECCCCcc
Confidence            8899999999999887754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.81  E-value=0.015  Score=58.81  Aligned_cols=159  Identities=6%  Similarity=-0.067  Sum_probs=102.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .+..+++++.||+|+..|..+++.+..+....+|.+-.-  .......+++.++.||.++.+|..+++. ...+.....+
T Consensus        97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~  173 (368)
T 3mmy_A           97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHW--IKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERC  173 (368)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE--EECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCE
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEE--EeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCc
Confidence            567899999999999999999999987776677665411  0011135677777899999999998877 4455444322


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEE
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYI  206 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  206 (613)
                      .. .... ...+++++.++.++..|..++...+.........        .. .+.      .+.+..   ......++.
T Consensus       174 ~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------~~-~~~------~~~~~~---~~~~~~~~~  233 (368)
T 3mmy_A          174 YC-ADVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------QH-RCV------AIFKDK---QNKPTGFAL  233 (368)
T ss_dssp             EE-EEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------CE-EEE------EEEECT---TSCEEEEEE
T ss_pred             eE-EEec-CCeeEEEeCCCcEEEEEeccccchhhhccccccC--------CC-ceE------EEcccC---CCCCCeEEE
Confidence            22 2233 4568899999999999999887776553221100        00 000      000000   001224899


Q ss_pred             EeeeeEEEEEeCCCC---ceEEEEE
Q 007199          207 MRTDYVLQSTSQDSG---EVLWNVA  228 (613)
Q Consensus       207 gr~d~~l~a~d~~~G---~~~Wn~t  228 (613)
                      |..|+.|+.+|.+++   ...+.+.
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             ecCCCcEEEEecCCCCccccceeee
Confidence            999999999998877   3444444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.77  E-value=0.0011  Score=67.02  Aligned_cols=146  Identities=11%  Similarity=0.058  Sum_probs=95.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCe----eeEEeeCCCceeeccccccCCCCCe-EEEecCCCCeEEEEec-CCCceeeecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGK----IRWSFGTGRPIYSSYQASFNSNASE-FYLDVDEDWELYFHSK-RFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~----~~W~~~~~~~i~s~~~~~~~~~~~~-~~i~~~~DG~lY~~~~-~~G~l~~~~~  120 (613)
                      .+..+++|+.||.|+..|..+++    .+..+....+|.+-   ....+ .. .++.++.||.++.+|. .++....+.-
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~   97 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC---NFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEE---EEEES-SSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEE---EECCC-CCcEEEEEcCCCeEEEEEeccCCceEeccc
Confidence            45789999999999999998888    77666556666543   11112 24 5666677999999999 8887744432


Q ss_pred             c-HHHHhhhCceeecCCcEEEEeecceEEEEECCC---------CcEEEEEecCCCCCCCCCcCCCCCccccCCCccccc
Q 007199          121 S-AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKS---------GRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       121 ~-~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~t---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                      . -...|.. ..++.+..+++|+.+++++..|..+         ++.++.+.....+.                    .+
T Consensus        98 ~~~~~~v~~-l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~--------------------~~  156 (342)
T 1yfq_A           98 NEANLGICR-ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF--------------------TM  156 (342)
T ss_dssp             CCCCSCEEE-EEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE--------------------EE
T ss_pred             cCCCCceEE-EEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE--------------------EE
Confidence            0 1222221 2222256688899999999999987         66655543221110                    01


Q ss_pred             ccccccccccccEEEEEeeeeEEEEEeCCC-CceE
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYVLQSTSQDS-GEVL  224 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~l~a~d~~~-G~~~  224 (613)
                      .       +..+.++++..|+.|+.+|.++ +...
T Consensus       157 ~-------~~~~~l~~~~~d~~i~i~d~~~~~~~~  184 (342)
T 1yfq_A          157 D-------TNSSRLIVGMNNSQVQWFRLPLCEDDN  184 (342)
T ss_dssp             E-------ECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred             E-------ecCCcEEEEeCCCeEEEEECCcccccc
Confidence            0       1123489999999999999987 6543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.77  E-value=0.009  Score=62.09  Aligned_cols=150  Identities=14%  Similarity=0.036  Sum_probs=94.4

Q ss_pred             CCCEEEEEecCCcEEEEeCC-CCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTK-LGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~-tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      ..++++.|+.||+|+..|.+ +++.+-++.. ..+|.+-   ....+ ...++-++.||.+..+|..+|.. ...+....
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v---~~~p~-~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~  291 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV---KFFPD-GQRFGTGSDDGTCRLFDMRTGHQ-LQVYNREP  291 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE---EECTT-SSEEEEECSSSCEEEEETTTTEE-EEEECCCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE---EEecC-CCeEEEEcCCCeEEEEECCCCcE-EEEecccc
Confidence            56789999999999999976 5676666653 2344332   11112 24778888999999999998876 32222211


Q ss_pred             H-------hhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          125 Y-------IRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       125 ~-------v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .       ...+-+++.|| .+++|+.+++++.-|..+|+....+..-......+.       .|      -.++|    
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-------~~------l~~s~----  354 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI-------SC------LGLSS----  354 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC-------CE------EEECS----
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce-------EE------EEECC----
Confidence            0       01223344455 466799999999999999999988743211000000       00      01111    


Q ss_pred             ccccccEEEEEeeeeEEEEEeCCCC
Q 007199          197 LKRIRQLVYIMRTDYVLQSTSQDSG  221 (613)
Q Consensus       197 ~~~~~~~v~igr~d~~l~a~d~~~G  221 (613)
                         ....|+-|..|++|+.+|...+
T Consensus       355 ---dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          355 ---DGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             ---SSSEEEEECTTSCEEEEECCSS
T ss_pred             ---CCCEEEEeeCCCCEEEEecCCC
Confidence               1347888999999999887654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.0051  Score=62.66  Aligned_cols=161  Identities=10%  Similarity=0.027  Sum_probs=96.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCe--eeEEeeC-CCceeeccccccCCC-CCeEEEecCCCCeEEEEecCCCce-eeecccH
Q 007199           48 PDVALVAALDGTIHLVDTKLGK--IRWSFGT-GRPIYSSYQASFNSN-ASEFYLDVDEDWELYFHSKRFGKM-KKLSSSA  122 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~--~~W~~~~-~~~i~s~~~~~~~~~-~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~  122 (613)
                      +..++.|+.||.|+..|..+|+  ....+.. ..+|..-   ....+ ...+++.++.||.++.+|..++.. ....+..
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV---QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE---EECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEE---EeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC
Confidence            6899999999999999999997  6676653 3445433   11111 024666777799999999987743 1222211


Q ss_pred             H-HHhhhCceeec--------------CCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcc
Q 007199          123 E-EYIRRMPYISK--------------DGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYE  187 (613)
Q Consensus       123 ~-~~v~~sP~~~~--------------dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (613)
                      . ..| .+..++.              ...+++|+.+++++..|..+++..+.....-.....++       .+      
T Consensus       146 ~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v-------~~------  211 (379)
T 3jrp_A          146 HAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV-------RD------  211 (379)
T ss_dssp             CTTCE-EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE-------EE------
T ss_pred             CCCce-EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE-------eE------
Confidence            1 111 1222222              34577899999999999999876654432100000000       00      


Q ss_pred             cccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          188 ELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      -.++|...    ....++.+..|+.|+.+|.+++...|....
T Consensus       212 ~~~sp~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  249 (379)
T 3jrp_A          212 VAWSPTVL----LRSYLASVSQDRTCIIWTQDNEQGPWKKTL  249 (379)
T ss_dssp             EEECCCCS----SSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred             EEECCCCC----CCCeEEEEeCCCEEEEEeCCCCCccceeee
Confidence            01111100    034788899999999999988875555443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.72  E-value=0.03  Score=55.55  Aligned_cols=101  Identities=9%  Similarity=-0.001  Sum_probs=62.2

Q ss_pred             eEEEecCCCCeEEEEecC-CCce---eeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCC
Q 007199           94 EFYLDVDEDWELYFHSKR-FGKM---KKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSAST  169 (613)
Q Consensus        94 ~~~i~~~~DG~lY~~~~~-~G~l---~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~  169 (613)
                      .+ +..+.++.||.++.. +|++   .+.- ....-.-...+++.||.+|++. .+.++.+|+. |+.+..+..... ++
T Consensus       185 ~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~  259 (296)
T 3e5z_A          185 LL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TS  259 (296)
T ss_dssp             EE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CC
T ss_pred             EE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ce
Confidence            34 667778999999875 5665   1111 1111111234567799999999 8999999997 999888875442 10


Q ss_pred             CCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCce
Q 007199          170 PGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~  223 (613)
                      .          +       .++.    +  ....||++..+ .|+.++.++++.
T Consensus       260 ~----------~-------~f~~----~--d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          260 N----------L-------CFGG----P--EGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             E----------E-------EEES----T--TSCEEEEEETT-EEEEEECSCCBC
T ss_pred             e----------E-------EEEC----C--CCCEEEEEcCC-eEEEEEcccccc
Confidence            0          0       0100    0  12378887665 577788776653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.70  E-value=0.026  Score=58.98  Aligned_cols=150  Identities=13%  Similarity=0.054  Sum_probs=94.9

Q ss_pred             CCCCEEEEEec--CC---cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecC---------CCCeEEEEecC
Q 007199           46 PEPDVALVAAL--DG---TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD---------EDWELYFHSKR  111 (613)
Q Consensus        46 ~~~~~v~v~t~--dG---~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~---------~DG~lY~~~~~  111 (613)
                      .....+|+.+.  .+   +|+.+|..||+++=+++++..- .   ..+..|...+|+...         .|+.++.+|..
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~---i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-N---PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-C---eEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            45588999875  23   8899999999999888876321 1   112334446777653         47889999998


Q ss_pred             CCcee-eeccc-HHHH----hhhCceeecCC-cEEEEee--cceEEEEECCCCcEEEE-EecCCCCCCCCCcCCCCCccc
Q 007199          112 FGKMK-KLSSS-AEEY----IRRMPYISKDG-GVTLGAM--KTSVFLVDVKSGRVVDN-YVLDFSASTPGFQSDENKHVV  181 (613)
Q Consensus       112 ~G~l~-~~~~~-~~~~----v~~sP~~~~dg-~v~~Gs~--~~~~~~vD~~tG~~~~~-~~~~~~~~~~~~~~~~~~~~~  181 (613)
                      ++++. .++.. -+..    --....++-|| .+|+.+.  ++++..|| +||+++.. ...++...             
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~-------------  171 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYH-------------  171 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEE-------------
Confidence            87762 22221 0110    01234566676 5888874  47899999 99999987 65433210             


Q ss_pred             cCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          182 PVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                              +.+.      .....+....|+.+..+|. +|+..+...
T Consensus       172 --------~~~~------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          172 --------IHPG------APSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             --------EEeC------CCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence                    0000      0123344556788999999 898887644

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.0049  Score=62.75  Aligned_cols=164  Identities=9%  Similarity=0.050  Sum_probs=95.4

Q ss_pred             CCCEEEEEecCCcEEEEeCC--CCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee-eecccH
Q 007199           47 EPDVALVAALDGTIHLVDTK--LGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK-KLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~--tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~-~~~~~~  122 (613)
                      .+..+++|+.||.|+..|..  +++...++.. ..+|.+-  .........+++.++.||.++.+|..+|+.. ...+..
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~   99 (379)
T 3jrp_A           22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV   99 (379)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEE--EeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC
Confidence            56789999999999998877  7777777764 3455433  1011111246777778999999999988621 222221


Q ss_pred             -HHHhhhCceeecC---CcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc--
Q 007199          123 -EEYIRRMPYISKD---GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN--  196 (613)
Q Consensus       123 -~~~v~~sP~~~~d---g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  196 (613)
                       ...|. +..++.+   ..+++|+.++++...|..+++...........  .+..      .+       ...|....  
T Consensus       100 ~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~v~------~~-------~~~~~~~~~~  163 (379)
T 3jrp_A          100 HSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVN------SA-------SWAPATIEED  163 (379)
T ss_dssp             CSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT--TCEE------EE-------EECCCC----
T ss_pred             CCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC--CceE------EE-------EEcCcccccc
Confidence             11221 2223333   35778999999999999988433222211100  0000      00       01110000  


Q ss_pred             ----ccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          197 ----LKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       197 ----~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                          .......++.|..|+.|+.+|.+++...|...
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  199 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  199 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence                00013478889999999999998888776643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.66  E-value=0.023  Score=57.68  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-----CCceeeccccccCCCCCeEEEecCCCCeEEEEec-----------
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-----GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSK-----------  110 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-----~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~-----------  110 (613)
                      .+..+++|+.||.|+..|..+++..|....     ..+|.+-   ....+ ..+++.++.||.++.+|.           
T Consensus       107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL---DWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE---EECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE---EEcCC-CCEEEEEcCCCCEEEEEcccccccccccc
Confidence            567899999999999988888876553321     2233322   11112 246677777999999994           


Q ss_pred             -------CCCceeeecccHHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          111 -------RFGKMKKLSSSAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       111 -------~~G~l~~~~~~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                             .+|+. ...+.....--.+..++.|| .+++|+.+++++..|..+|+.+..+...
T Consensus       183 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          183 TPWGSKMPFGEL-MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             BTTBSCCCTTCE-EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             cccccccchhhh-eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence                   35555 33333221111223344455 6778999999999999999999998743

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.62  E-value=0.0088  Score=59.66  Aligned_cols=110  Identities=11%  Similarity=0.026  Sum_probs=77.8

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .++.+|+++. ++.++.+|..|++++-+++.+ +.=..     +..+...+|+.. .++.|+.+|+.+.++ .-...+..
T Consensus        74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g-----lt~Dg~~l~vs~-gs~~l~viD~~t~~v-~~~I~Vg~  146 (266)
T 2iwa_A           74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG-----LATDGKILYGSD-GTSILYEIDPHTFKL-IKKHNVKY  146 (266)
T ss_dssp             ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE-----EEECSSSEEEEC-SSSEEEEECTTTCCE-EEEEECEE
T ss_pred             eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE-----EEECCCEEEEEC-CCCeEEEEECCCCcE-EEEEEECC
Confidence            4678999886 579999999999999999876 21111     111234577766 489999999998776 33333321


Q ss_pred             ---Hhhh--CceeecCCcEEEEee-cceEEEEECCCCcEEEEEecC
Q 007199          125 ---YIRR--MPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       125 ---~v~~--sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~  164 (613)
                         .+..  --... ||.+|+..+ ++.+..||++||+++.++..+
T Consensus       147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLP  191 (266)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred             CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence               1100  00134 889999885 689999999999999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.60  E-value=0.014  Score=58.38  Aligned_cols=146  Identities=11%  Similarity=0.092  Sum_probs=85.1

Q ss_pred             CEEEEE-ecCCcEEEEeCC-CC--eeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecC--CCceeee-ccc
Q 007199           49 DVALVA-ALDGTIHLVDTK-LG--KIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKR--FGKMKKL-SSS  121 (613)
Q Consensus        49 ~~v~v~-t~dG~l~ald~~-tG--~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~--~G~l~~~-~~~  121 (613)
                      ..+|++ ..||.|+..|.. +|  +.+..+..+..+..-   ....+...+|+.+..+|.++.++..  +|+++.+ .+.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPM---VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCE---EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceE---EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence            567777 679999999874 56  455555544332221   1223334577777766999887765  7776322 222


Q ss_pred             HHHHhhhCceeecCCc-EEEEee-cceEEEEEC---CCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          122 AEEYIRRMPYISKDGG-VTLGAM-KTSVFLVDV---KSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~-v~~Gs~-~~~~~~vD~---~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      ....+ ...+++.||. +|+++. ++.++.+|.   .+++.+..+.......           .+       .++|    
T Consensus        82 ~~~~~-~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----------~~-------~~s~----  138 (343)
T 1ri6_A           82 LPGSL-THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-----------SA-------NISP----  138 (343)
T ss_dssp             CSSCC-SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-----------CC-------EECT----
T ss_pred             cCCCC-cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-----------EE-------EECC----
Confidence            22211 2233566775 777665 778999998   4555655554322111           00       1111    


Q ss_pred             ccccccEEEEEe-eeeEEEEEeCCC-Cce
Q 007199          197 LKRIRQLVYIMR-TDYVLQSTSQDS-GEV  223 (613)
Q Consensus       197 ~~~~~~~v~igr-~d~~l~a~d~~~-G~~  223 (613)
                         ....+|++. .|..|+.+|..+ |+.
T Consensus       139 ---dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A          139 ---DNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             ---TSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             ---CCCEEEEecCCCCEEEEEEecCCCce
Confidence               123678877 889999999876 654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.59  E-value=0.048  Score=60.44  Aligned_cols=109  Identities=14%  Similarity=0.050  Sum_probs=76.4

Q ss_pred             CCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecC--CCceeeecccHHH
Q 007199           48 PDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKR--FGKMKKLSSSAEE  124 (613)
Q Consensus        48 ~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~--~G~l~~~~~~~~~  124 (613)
                      .+++||+. .+|+|+.+|..||++++++.++......   .+..+...+|+. +.||.++.+|..  ++++ .....++ 
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v---~~SpDGr~lyv~-~~dg~V~viD~~~~t~~~-v~~i~~G-  239 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS---RLSASGRYLFVI-GRDGKVNMIDLWMKEPTT-VAEIKIG-  239 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEE---EECTTSCEEEEE-ETTSEEEEEETTSSSCCE-EEEEECC-
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccce---EECCCCCEEEEE-cCCCeEEEEECCCCCCcE-eEEEecC-
Confidence            35666665 5689999999999999999988654432   123333346655 469999999995  6766 3333332 


Q ss_pred             HhhhCc---eeec----CC-cEEEEee-cceEEEEECCCCcEEEEEecCC
Q 007199          125 YIRRMP---YISK----DG-GVTLGAM-KTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       125 ~v~~sP---~~~~----dg-~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                         ..|   .++.    || .+|+++. .+++..+|..|++++....+++
T Consensus       240 ---~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          240 ---SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             ---SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             ---CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence               223   3452    55 6888774 4889999999999999988654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.57  E-value=0.02  Score=58.31  Aligned_cols=114  Identities=12%  Similarity=0.209  Sum_probs=72.3

Q ss_pred             CCEEEEEe--cCCcEEEEeCCCCeeeEEeeCCC--------ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceee
Q 007199           48 PDVALVAA--LDGTIHLVDTKLGKIRWSFGTGR--------PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKK  117 (613)
Q Consensus        48 ~~~v~v~t--~dG~l~ald~~tG~~~W~~~~~~--------~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~  117 (613)
                      ++.+||+.  .+++|+.+| .+|+.++++...+        .+..+.-...+.+...+|+....++.+..++..+|++ .
T Consensus       154 ~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~  231 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-V  231 (329)
T ss_dssp             TCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E
T ss_pred             CCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-E
Confidence            67888887  389999999 7899999886422        1111211123333346888888899999999888877 3


Q ss_pred             ecccHHHH------hhhCc--eeecCCcEEEE-eecceEEEEECCCCcEEEEEec
Q 007199          118 LSSSAEEY------IRRMP--YISKDGGVTLG-AMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       118 ~~~~~~~~------v~~sP--~~~~dg~v~~G-s~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      ..+.....      +.-+|  ++..||.+|++ +...+++.+|..+|+++..+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~  286 (329)
T 3fvz_A          232 REIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP  286 (329)
T ss_dssp             EEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred             EEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence            33322211      00112  12225555543 3445899999999999998864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.54  E-value=0.047  Score=54.55  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCC-Ceee------EEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEec--CCCcee
Q 007199           47 EPDVALVAA-LDGTIHLVDTKL-GKIR------WSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSK--RFGKMK  116 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~t-G~~~------W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~--~~G~l~  116 (613)
                      .+..+|+++ .||.|+.+|..+ |++.      +....+..+..-   ....+...+|+.+..|+.++.++.  .+|.++
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM---VFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE---EECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE---EECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            556788888 899999999887 8763      333333322221   123333357777777999999988  456552


Q ss_pred             eecc--cHHHHh-----hhCceeecCC-cEEEEe-ecceEEEEECC--CCcE
Q 007199          117 KLSS--SAEEYI-----RRMPYISKDG-GVTLGA-MKTSVFLVDVK--SGRV  157 (613)
Q Consensus       117 ~~~~--~~~~~v-----~~sP~~~~dg-~v~~Gs-~~~~~~~vD~~--tG~~  157 (613)
                      ....  .++.-.     ....+++.|| .+|+.. .++.++..|..  +|+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            1111  111100     0124466677 466544 67888888887  5543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.53  E-value=0.023  Score=57.39  Aligned_cols=110  Identities=14%  Similarity=0.062  Sum_probs=78.6

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ...++.++.||+|+..|..+++..-++.. ..+|.+-   ....+ ..+++.++.||.++.+|..+++. ...+...+.|
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~---~~sp~-g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~v  240 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL---TASPD-GTLIASAGKDGEIMLWNLAAKKA-MYTLSAQDEV  240 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE---EECTT-SSEEEEEETTCEEEEEETTTTEE-EEEEECCSCE
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE---EEcCC-CCEEEEEeCCCeEEEEECCCCcE-EEEecCCCcE
Confidence            34789999999999999999998887754 2344432   11112 24677778899999999998877 5555444333


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEec
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      . +-+++.||..++.+.++.+...+..++.++..+..
T Consensus       241 ~-~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~  276 (319)
T 3frx_A          241 F-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP  276 (319)
T ss_dssp             E-EEEECSSSSEEEEEETTEEEEEEETTEEEEEEECC
T ss_pred             E-EEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCc
Confidence            2 23456688888777778888888888888877753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.50  E-value=0.043  Score=55.75  Aligned_cols=152  Identities=16%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeecccH-------HHHhhhCc
Q 007199           59 TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSSA-------EEYIRRMP  130 (613)
Q Consensus        59 ~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~-------~~~v~~sP  130 (613)
                      +|+.+|..+|+++..+..+ .+..+.-...+.+. .+|+.+..++.++.++.. |+. ....+..       ...+ ..|
T Consensus        70 ~i~~~d~~~g~~~~~~~~~-~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~-~~P  145 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKN-LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHF-CQP  145 (329)
T ss_dssp             CEEEECTTTCCEEEEECTT-TCSSEEEEEECTTS-CEEEEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCC-SSE
T ss_pred             cEEEEECCCCeEEeccCCC-ccCCceEEEECCCC-CEEEEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCcccc-CCC
Confidence            7999999999998766432 22222111122222 478888878889998875 331 0222210       0000 123


Q ss_pred             ---eeec-CCcEEEEe--ecceEEEEECCCCcEEEEEecCCCCCC-CCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          131 ---YISK-DGGVTLGA--MKTSVFLVDVKSGRVVDNYVLDFSAST-PGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       131 ---~~~~-dg~v~~Gs--~~~~~~~vD~~tG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                         +++. +|.+|+..  .+..++.+| .+|+.++.+...+.... .+....     .|   ..-.+++       ..+.
T Consensus       146 ~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~-----~p---~gia~d~-------~~g~  209 (329)
T 3fvz_A          146 TDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFS-----VP---HSLALVP-------HLDQ  209 (329)
T ss_dssp             EEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEES-----CE---EEEEEET-------TTTE
T ss_pred             cEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccC-----CC---cEEEEEC-------CCCE
Confidence               3554 78899866  488999999 67999998865432100 000000     00   0001111       1257


Q ss_pred             EEEEe-eeeEEEEEeCCCCceEEEEEec
Q 007199          204 VYIMR-TDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       204 v~igr-~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      ||+.. .+..|+.+|+++|+.+..+...
T Consensus       210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          210 LCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            78765 4578999999889888776544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.48  E-value=0.049  Score=57.20  Aligned_cols=164  Identities=12%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             CCCCEEEEEec--CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC-Cceee---ec
Q 007199           46 PEPDVALVAAL--DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF-GKMKK---LS  119 (613)
Q Consensus        46 ~~~~~v~v~t~--dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~-G~l~~---~~  119 (613)
                      ..+..+||++.  ++.|..+|..|++++-+++..+.. .-+    +.+...++..+. ||.+..++..+ |++..   -.
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~-~~~----P~g~~~~~~~~~-DG~~~~v~~~~~g~v~~~~~~~  219 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIF----PTAPDTFFMHCR-DGSLAKVAFGTEGTPEITHTEV  219 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEE----EEETTEEEEEET-TSCEEEEECCSSSCCEEEECCC
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc-eee----cCCCceeEEECC-CCCEEEEECCCCCeEEEeecce
Confidence            47789999985  689999999999999999876531 110    111113444455 99999999876 77621   11


Q ss_pred             ccHH-HHhhhCcee-ecCCcEEEEeecceEEEEECCCCcE--EEEEecCCC--CCCCCCcCCCCCccccCCCcccccccc
Q 007199          120 SSAE-EYIRRMPYI-SKDGGVTLGAMKTSVFLVDVKSGRV--VDNYVLDFS--ASTPGFQSDENKHVVPVDGYEELVESG  193 (613)
Q Consensus       120 ~~~~-~~v~~sP~~-~~dg~v~~Gs~~~~~~~vD~~tG~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (613)
                      +... ..+...|.+ ..||.+++-+.++++|.+|..++.+  ..++.....  ....-.+...+.         -.+++ 
T Consensus       220 ~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~---------~a~~~-  289 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ---------VAYHR-  289 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC---------EEEET-
T ss_pred             eccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce---------eeECC-
Confidence            2111 122222332 2488777778889999999988763  322221000  000000000000         01111 


Q ss_pred             cccccccccEEEEEee----------eeEEEEEeCCCCceEEEEEece
Q 007199          194 VGNLKRIRQLVYIMRT----------DYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       194 ~~~~~~~~~~v~igr~----------d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                            ..+++|+...          ..+|..+|.++++++=++.++.
T Consensus       290 ------~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~  331 (386)
T 3sjl_D          290 ------ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH  331 (386)
T ss_dssp             ------TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             ------CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence                  2458999754          3789999999999999998876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.46  E-value=0.0031  Score=72.58  Aligned_cols=149  Identities=13%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC----CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT----GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS-  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~----~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~-  121 (613)
                      .++.+++||.+|.|+.+|..+++..+-...    ...|++-   ..+. .+.++++ +.++.||.+++.+|+.+.++.. 
T Consensus       372 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i---~~d~-~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~  446 (781)
T 3v9f_A          372 GQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS---LKDS-EGNLWFG-TYLGNISYYNTRLKKFQIIELEK  446 (781)
T ss_dssp             TTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE---EECT-TSCEEEE-ETTEEEEEECSSSCEEEECCSTT
T ss_pred             CCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE---EECC-CCCEEEE-eccCCEEEEcCCCCcEEEeccCC
Confidence            458899999999999999998876653211    1123222   0111 2346664 4478899999998887555432 


Q ss_pred             HH-HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          122 AE-EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       122 ~~-~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                      .. ..| .+-+...+|.+++|+. .-++.+|+.+|+..........    +...+.         . ..+   ..   ..
T Consensus       447 ~~~~~v-~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~----~~~~~~---------i-~~i---~~---d~  504 (781)
T 3v9f_A          447 NELLDV-RVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNS----QLLENF---------V-RSI---AQ---DS  504 (781)
T ss_dssp             TCCCCE-EEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTS----SCSCSC---------E-EEE---EE---CT
T ss_pred             CCCCeE-EEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCccc----ccccce---------e-EEE---EE---cC
Confidence            11 111 1223345789999998 7899999999987654322110    000000         0 000   00   12


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCc
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~  222 (613)
                      ++.|+||..+.-|+.+|+++++
T Consensus       505 ~g~lWigt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          505 EGRFWIGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             TCCEEEEESSSCEEEECTTCCE
T ss_pred             CCCEEEEEcCCCEEEEeCCCCe
Confidence            5689999886568889988764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.43  E-value=0.014  Score=65.86  Aligned_cols=152  Identities=14%  Similarity=0.146  Sum_probs=99.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH--
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE--  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~--  123 (613)
                      .+..++.|+.||+|+..|..+|+...++.. ..+|.+-   ....+. ..++.++.||.+..+|...+....+.....  
T Consensus       441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~---~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  516 (694)
T 3dm0_A          441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV---AFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGH  516 (694)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE---EECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE---EEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence            567899999999999999999999998864 3345433   111222 356677789999999976433312211111  


Q ss_pred             -HHhhhCceeecCC---cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          124 -EYIRRMPYISKDG---GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       124 -~~v~~sP~~~~dg---~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                       ..|. +-.++.++   .++.|+.|+++..-|..+++....+.......    .      .+       .++|       
T Consensus       517 ~~~v~-~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v----~------~v-------~~sp-------  571 (694)
T 3dm0_A          517 RDWVS-CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV----S------TV-------AVSP-------  571 (694)
T ss_dssp             SSCEE-EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----E------EE-------EECT-------
T ss_pred             CCcEE-EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE----E------EE-------EEeC-------
Confidence             0111 11222233   58889999999999999999988775322110    0      00       1111       


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ....+..|..|++|+.+|..+|+.+..+
T Consensus       572 dg~~l~sg~~Dg~i~iwd~~~~~~~~~~  599 (694)
T 3dm0_A          572 DGSLCASGGKDGVVLLWDLAEGKKLYSL  599 (694)
T ss_dssp             TSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence            1347888999999999999999877654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.40  E-value=0.025  Score=59.49  Aligned_cols=162  Identities=15%  Similarity=0.039  Sum_probs=96.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .+..+++|+.||+|+..|..+|+.+.++.....-..+  ...+   ..+++.++.|+.++.+|..........+....-.
T Consensus       158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~--~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS--LSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE--EEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE--EeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence            6688999999999999999999999998753322222  1111   2366777889999999987654422222221111


Q ss_pred             hhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          127 RRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       127 ~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      ........+| .+..|+.|+.++..|..+|+..+..-........++...   ..++                .....+.
T Consensus       233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~p----------------~~~~~la  293 (420)
T 4gga_A          233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV---AWCP----------------WQSNVLA  293 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEE---EECT----------------TCTTEEE
T ss_pred             eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeee---eeCC----------------CcccEEE
Confidence            1111222244 466799999999999988874321110000000000000   0111                0123444


Q ss_pred             E--EeeeeEEEEEeCCCCceEEEEEecee
Q 007199          206 I--MRTDYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       206 i--gr~d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                      +  |..|++|+.+|..+|.....+.....
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~  322 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQ  322 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEECSSC
T ss_pred             EEeecCCCEEEEEeCCccccceeeccccc
Confidence            4  45799999999999999888765543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.39  E-value=0.018  Score=57.30  Aligned_cols=167  Identities=7%  Similarity=-0.011  Sum_probs=93.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEe----eC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce------
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSF----GT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM------  115 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~----~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l------  115 (613)
                      .+..+++|+.||+|+..|..++...|++    .. ..+|.+-  ...+.....+++.++.||.++.+|..+|..      
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   99 (351)
T 3f3f_A           22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI--DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRR   99 (351)
T ss_dssp             SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEE--EECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS
T ss_pred             CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEE--EEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccC
Confidence            5678999999999999999988655544    22 3344432  111110124677777799999999987742      


Q ss_pred             --eeecccH-HHHhhhCceeecC--C-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccc
Q 007199          116 --KKLSSSA-EEYIRRMPYISKD--G-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEEL  189 (613)
Q Consensus       116 --~~~~~~~-~~~v~~sP~~~~d--g-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (613)
                        ....+.. ...|. +-.+..+  + .+++|+.+++++..|..+++.+..+...................+    ..-.
T Consensus       100 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  174 (351)
T 3f3f_A          100 WNKLCTLNDSKGSLY-SVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD----FCLS  174 (351)
T ss_dssp             EEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC----EEEE
T ss_pred             cceeeeecccCCcee-EEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce----eEEE
Confidence              0112211 11221 1223333  4 477899999999999999987665543221110000000000000    0000


Q ss_pred             cccccccccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          190 VESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       190 ~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      ..|...    ....+.++..|+.+...+..++...
T Consensus       175 ~~p~~~----~~~~l~~~~~~~~~~~~~~~~~~~~  205 (351)
T 3f3f_A          175 WCPSRF----SPEKLAVSALEQAIIYQRGKDGKLH  205 (351)
T ss_dssp             ECCCSS----SCCEEEEEETTEEEEEEECTTSCEE
T ss_pred             eccCCC----CCcEEEEecCCCcEEEEccCCCcee
Confidence            111100    1458888999999987777777653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.39  E-value=0.0096  Score=68.64  Aligned_cols=148  Identities=9%  Similarity=0.101  Sum_probs=89.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-------CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeec
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-------RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLS  119 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-------~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~  119 (613)
                      .++.+++||.+|.|+.+|..+++..+-....       ..|.+-   ..+. ...++| ++.+|.|+.+++.++..+...
T Consensus       319 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i---~~d~-~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~  393 (795)
T 4a2l_A          319 SQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI---VEDK-DKNLWI-GTNDGGLNLYNPITQRFTSYT  393 (795)
T ss_dssp             TTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE---EECT-TSCEEE-EESSSCEEEECTTTCCEEEEC
T ss_pred             CCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE---EECC-CCCEEE-EECCCCeEEEcCCCCcEEEEe
Confidence            5688999999999999999888765432211       112221   0111 124555 455889999999988775554


Q ss_pred             ccHH--------HHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccc
Q 007199          120 SSAE--------EYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       120 ~~~~--------~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                      ....        ..| .+-+...+|. +++|+.++-++.+|++||+.. .+....+    .....         ..-.+.
T Consensus       394 ~~~~~~~~~l~~~~v-~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~----~l~~~---------~v~~i~  458 (795)
T 4a2l_A          394 LQEDESARGIGSNNI-KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNS----QLVNE---------NVYAIL  458 (795)
T ss_dssp             CC------CCSCSCE-EEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTS----CCSCS---------CEEEEE
T ss_pred             cCCCCcccCCCCccE-EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCC----CcCCC---------eeEEEE
Confidence            3321        111 1233455899 999999889999999999865 3432111    00000         000000


Q ss_pred             ccccccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                          .   ..++.|+||.. .-|+.+|+++++
T Consensus       459 ----~---d~~g~lwigt~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          459 ----P---DGEGNLWLGTL-SALVRFNPEQRS  482 (795)
T ss_dssp             ----E---CSSSCEEEEES-SCEEEEETTTTE
T ss_pred             ----E---CCCCCEEEEec-CceeEEeCCCCe
Confidence                0   02568999987 458889988774

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.35  E-value=0.043  Score=58.48  Aligned_cols=166  Identities=12%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             CCCCEEEEEec--CCcEEEEeCCCCeeeEEeeCCCc--ee-------ecccc--------------------ccCCC---
Q 007199           46 PEPDVALVAAL--DGTIHLVDTKLGKIRWSFGTGRP--IY-------SSYQA--------------------SFNSN---   91 (613)
Q Consensus        46 ~~~~~v~v~t~--dG~l~ald~~tG~~~W~~~~~~~--i~-------s~~~~--------------------~~~~~---   91 (613)
                      .....+||++.  +++|..+|..|++++.++..++.  +.       .....                    ..+.+   
T Consensus       186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence            46789999985  57999999999999999987542  10       00000                    00000   


Q ss_pred             ----------CCeEEEecCCCCeEEEEecCCCce---eeecccHHHH--hhhCc------eeecC-CcEEEEee------
Q 007199           92 ----------ASEFYLDVDEDWELYFHSKRFGKM---KKLSSSAEEY--IRRMP------YISKD-GGVTLGAM------  143 (613)
Q Consensus        92 ----------~~~~~i~~~~DG~lY~~~~~~G~l---~~~~~~~~~~--v~~sP------~~~~d-g~v~~Gs~------  143 (613)
                                ...+++. +..|.+|.+|...+..   ..|+......  +...|      .++.| +.+|+...      
T Consensus       266 ~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          266 LINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             BCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             eeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence                      0122333 3367778877765543   1222211111  11111      23434 57888653      


Q ss_pred             ----cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc-EEEEEee-eeEEEEEe
Q 007199          144 ----KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ-LVYIMRT-DYVLQSTS  217 (613)
Q Consensus       144 ----~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~igr~-d~~l~a~d  217 (613)
                          .+++..||.+|++++.++..+....           .+       .+++       ... .+|+..+ +..|..+|
T Consensus       345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~-----------gi-------a~sp-------Dg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          345 HKAASRFVVVLNAETGERINKIELGHEID-----------SI-------NVSQ-------DAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEEC-----------EE-------EECC-------SSSCEEEEEETTTTEEEEEE
T ss_pred             ccCCCCEEEEEECCCCeEEEEEECCCCcC-----------eE-------EEcc-------CCCEEEEEEcCCCCeEEEEE
Confidence                4589999999999999987654110           00       1111       123 7899885 89999999


Q ss_pred             CCCCceEEEE-Eeceeeeeec
Q 007199          218 QDSGEVLWNV-AYADFKAEFR  237 (613)
Q Consensus       218 ~~~G~~~Wn~-t~~~~~a~~~  237 (613)
                      ..+++++=++ .++..--.++
T Consensus       400 ~~t~kvv~tI~~vG~~P~~i~  420 (426)
T 3c75_H          400 AATGEELRSVDQLGRGPQIIT  420 (426)
T ss_dssp             TTTCCEEEEECCCSSSCCEEE
T ss_pred             CCCCCEEEEecCCCCCCcEEE
Confidence            9999998776 5665443333

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.35  E-value=0.0082  Score=69.04  Aligned_cols=149  Identities=8%  Similarity=-0.038  Sum_probs=84.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee-------C---C-----CceeeccccccCCCCCeEEEecCCCCeEEEEecC
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG-------T---G-----RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKR  111 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~-------~---~-----~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~  111 (613)
                      .++.+++||..+.|+.+|..+++..+-..       .   .     ..|.+-   ..+.+ ..++|+ +.++.|+.++..
T Consensus       267 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i---~~D~~-g~lWig-t~~~Gl~~~~~~  341 (781)
T 3v9f_A          267 KDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI---FQDSF-NNIWIG-TWGGGINFISNA  341 (781)
T ss_dssp             TTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE---EECSS-CCEEEE-EBSSCEEEECSS
T ss_pred             CCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE---EEeCC-CCEEEE-ecCCeEEEeCCC
Confidence            57899999998889999999988654322       1   0     112211   01111 235554 458889999998


Q ss_pred             CCceeeecccH--------HHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccC
Q 007199          112 FGKMKKLSSSA--------EEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPV  183 (613)
Q Consensus       112 ~G~l~~~~~~~--------~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (613)
                      ++..+.+....        ..-.-.+-+...+|.+++|+..+-++.+|+.+++..+-. ......     .+.--+.+  
T Consensus       342 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~-----~~~v~~i~--  413 (781)
T 3v9f_A          342 PPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK-ENRELL-----SNSVLCSL--  413 (781)
T ss_dssp             CCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC------CC-----CSBEEEEE--
T ss_pred             CCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc-CCCCCC-----CcceEEEE--
Confidence            77765554321        111112233455789999999889999999988765421 111000     00000000  


Q ss_pred             CCcccccccccccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          184 DGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                            .+        .++.|+||..+.-|+.+|+++|+
T Consensus       414 ------~d--------~~g~lWigt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          414 ------KD--------SEGNLWFGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             ------EC--------TTSCEEEEETTEEEEEECSSSCE
T ss_pred             ------EC--------CCCCEEEEeccCCEEEEcCCCCc
Confidence                  00        25689999877778889987774

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.029  Score=65.84  Aligned_cols=163  Identities=10%  Similarity=0.035  Sum_probs=99.7

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh-
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI-  126 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v-  126 (613)
                      +..++.++.||+|+.-|..+|+.+.++.....|.+-   ....+. .+++.++.||.++.+|..++.+.  ++.++..- 
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v---~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~--~~~i~~~~~  142 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSI---DTDASL-DWMLIGLQNGSMIVYDIDRDQLS--SFKLDNLQK  142 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEE---ECCTTC-SEEEEEETTSCEEEEETTTTEEE--EEEECCHHH
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEE---EECCCC-CEEEEEcCCCcEEEEECCCCccc--cceeccccc
Confidence            457888999999999999999999988755555443   122222 35566677999999999988763  22221100 


Q ss_pred             -------hhCce----eecC--CcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccC-CCccc--cc
Q 007199          127 -------RRMPY----ISKD--GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPV-DGYEE--LV  190 (613)
Q Consensus       127 -------~~sP~----~~~d--g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~  190 (613)
                             +..|+    ++-+  +.+.+|+.++++ .-|.++|+.+..+...... ..+....... .... .+...  .+
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-g~~~~~~~~~-~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-FAPGGDFSEK-TNEKRTPKVIQSLY  219 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-TCCCSTTCCC-TTSCBCCCEEEEEE
T ss_pred             cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC-cCCCcccccc-cccccCCCeEEEEE
Confidence                   11222    2222  468889999999 9999999999888643110 0010000000 0000 00000  11


Q ss_pred             ccccccccccccEEEEEeeeeEEEEEeCCCCceEEE
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      +|       ....+..|..|+.|+.+|.++|+.+-.
T Consensus       220 sp-------dg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          220 HP-------NSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             CT-------TSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             cC-------CCCEEEEEECCCeEEEEECCCCcEEEE
Confidence            11       134788899999999999999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.33  E-value=0.019  Score=57.08  Aligned_cols=108  Identities=11%  Similarity=0.009  Sum_probs=66.6

Q ss_pred             CCC-EEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPD-VALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~-~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++ ++++++.+|.|+.+|..+|...|....+. +.+-   ..+.+. .+|+....++.|+.+|+.+|+.+.+.-.....
T Consensus        38 ~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~l---~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~  112 (296)
T 3e5z_A           38 ARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHH-QNGH---CLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGK  112 (296)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTSCEEEEESSCSS-EEEE---EECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEECCCCC-ccee---eECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCC
Confidence            445 67778889999999999884444432222 2211   112222 47777777899999999899874442211111


Q ss_pred             hh---hCceeecCCcEEE-----Ee-------------ecceEEEEECCCCcEEEE
Q 007199          126 IR---RMPYISKDGGVTL-----GA-------------MKTSVFLVDVKSGRVVDN  160 (613)
Q Consensus       126 v~---~sP~~~~dg~v~~-----Gs-------------~~~~~~~vD~~tG~~~~~  160 (613)
                      -.   ...+++.||.+|+     |+             ..+.+|.+|+. |++...
T Consensus       113 ~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (296)
T 3e5z_A          113 KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP  167 (296)
T ss_dssp             ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred             CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence            11   1234666889998     55             24588999988 776543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.31  E-value=0.038  Score=62.28  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=83.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ...++.|+.||+|+..|..+++.+-++... ++|.+-   ....+ ..+++.++.||.++.+|..+|+. ...+.....|
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v---~~spd-g~~l~sg~~Dg~i~iwd~~~~~~-~~~~~~~~~v  605 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV---AVSPD-GSLCASGGKDGVVLLWDLAEGKK-LYSLEANSVI  605 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSBCEEEETTTTEE-EECCBCSSCE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE---EEeCC-CCEEEEEeCCCeEEEEECCCCce-EEEecCCCcE
Confidence            357899999999999999999999888643 344432   11222 24677778899999999999887 5555544333


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      . +-+++.|+.+++++.++.+..-|..+|+++..+...
T Consensus       606 ~-~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          606 H-ALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             E-EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred             E-EEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccc
Confidence            2 334566888888888999999999999999888643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.23  E-value=0.013  Score=62.13  Aligned_cols=155  Identities=8%  Similarity=0.049  Sum_probs=89.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc-eeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP-IYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~-i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      ..+.++.|+.||+|...|..++........... +... ......+ ..+++.++.||.++.+|.....+  ..+... .
T Consensus       176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~~--~~~~~h~~  251 (435)
T 4e54_B          176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSAS-SRMVVTGDNVGNVILLNMDGKEL--WNLRMHKK  251 (435)
T ss_dssp             CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETT-TTEEEEECSSSBEEEEESSSCBC--CCSBCCSS
T ss_pred             CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCC-CCEEEEEeCCCcEeeeccCccee--EEEecccc
Confidence            356899999999999999988776655543321 1111 0111112 24677788899999999864333  223221 1


Q ss_pred             HhhhCceeecCC--cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccccc
Q 007199          125 YIRRMPYISKDG--GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQ  202 (613)
Q Consensus       125 ~v~~sP~~~~dg--~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (613)
                      .|. +-.++.++  .+.+|+.|+++..-|..+++....+....... .++.     ..        .++|       .+.
T Consensus       252 ~v~-~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~-~~v~-----~~--------~~sp-------dg~  309 (435)
T 4e54_B          252 KVT-HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR-HPVN-----AA--------CFSP-------DGA  309 (435)
T ss_dssp             CEE-EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS-SCEE-----EC--------CBCT-------TSS
T ss_pred             eEE-eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc-cccc-----ce--------eECC-------CCC
Confidence            121 12222233  45679999999988888776443332111000 0000     00        1111       134


Q ss_pred             EEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          203 LVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       203 ~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      .|+.|..|+.|+.+|..+|...-.+
T Consensus       310 ~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          310 RLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             EEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             eeEEEcCCCEEEEEECCCCccceEE
Confidence            7888999999999999888766554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.22  E-value=0.034  Score=54.98  Aligned_cols=148  Identities=9%  Similarity=-0.051  Sum_probs=88.8

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee-----CCCceeeccccccCCCCCeE-EEecCCCCeEEEEecCCCceeeecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG-----TGRPIYSSYQASFNSNASEF-YLDVDEDWELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~-----~~~~i~s~~~~~~~~~~~~~-~i~~~~DG~lY~~~~~~G~l~~~~~  120 (613)
                      .+..++.++.||+|+..|..+|+......     ..+++...  ...+.....+ ...++.|+.+..+|..++.. ....
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-~~~~  237 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV--AWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAV  237 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE--EECTTSTTEEEEEECTTTCEEEEEETTTCCE-EEEE
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE--EecCCCCcEEEEEecCCCCEEEEEecccccc-cccc
Confidence            56789999999999999999987554321     12233332  1112222222 34567799999999988777 3333


Q ss_pred             cHHHHhhhCceeecCCcEEEE--eecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          121 SAEEYIRRMPYISKDGGVTLG--AMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       121 ~~~~~v~~sP~~~~dg~v~~G--s~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                      .....+...-+...++.++++  +.|++++..|..||+.+.++..-..    ++.      .+       .++|      
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~----~V~------~l-------~~sp------  294 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS----RVL------SL-------TMSP------  294 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS----CEE------EE-------EECT------
T ss_pred             cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC----CEE------EE-------EEcC------
Confidence            333333332223323445554  4899999999999999999863211    000      00       1111      


Q ss_pred             ccccEEEEEeeeeEEEEEeCCCC
Q 007199          199 RIRQLVYIMRTDYVLQSTSQDSG  221 (613)
Q Consensus       199 ~~~~~v~igr~d~~l~a~d~~~G  221 (613)
                       ....|+-|..|++|+.+|-...
T Consensus       295 -dg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          295 -DGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             -TSSCEEEEETTTEEEEECCSCC
T ss_pred             -CCCEEEEEecCCeEEEEECCCC
Confidence             1236777999999998876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.12  E-value=0.079  Score=53.84  Aligned_cols=142  Identities=15%  Similarity=0.111  Sum_probs=87.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH---
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA---  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~---  122 (613)
                      .+..++.|+.||+|+.-|..+|+.+.++.. ..+|.+-   ....+. ..++.++.||.++.+|... .. ......   
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v---~~sp~~-~~l~s~~~d~~i~~wd~~~-~~-~~~~~~~~~  160 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV---AFSPDN-RQILSAGAEREIKLWNILG-EC-KFSSAEKEN  160 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEE---EECSST-TEEEEEETTSCEEEEESSS-CE-EEECCTTTS
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEE---EECCCC-CEEEEEcCCCEEEEEeccC-Cc-eeeeecccC
Confidence            567888999999999999999999998864 3455443   112222 3566677799999999873 33 222111   


Q ss_pred             -HHHh---hhCceee-------cCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccc
Q 007199          123 -EEYI---RRMPYIS-------KDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVE  191 (613)
Q Consensus       123 -~~~v---~~sP~~~-------~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (613)
                       ...|   .-+|...       ....+.+|+.|+++...| .+++....+.......    .      .+       .++
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v----~------~~-------~~s  222 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNV----N------HL-------SIS  222 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCE----E------EE-------EEC
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccc----e------EE-------EEC
Confidence             0111   1112110       013477899999999999 5677777765322110    0      00       111


Q ss_pred             cccccccccccEEEEEeeeeEEEEEeCC
Q 007199          192 SGVGNLKRIRQLVYIMRTDYVLQSTSQD  219 (613)
Q Consensus       192 ~~~~~~~~~~~~v~igr~d~~l~a~d~~  219 (613)
                      |       ....|..|..|+.|+.+|..
T Consensus       223 ~-------~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          223 P-------NGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             T-------TSSEEEEEETTCEEEEEESS
T ss_pred             C-------CCCEEEEEcCCCeEEEEECC
Confidence            1       13378889999999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.11  E-value=0.036  Score=58.23  Aligned_cols=146  Identities=10%  Similarity=-0.001  Sum_probs=90.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeE----EeeC-CCceeeccccccCCCCCeEEE-ecCCCCeEEEEecCCCceeeecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRW----SFGT-GRPIYSSYQASFNSNASEFYL-DVDEDWELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W----~~~~-~~~i~s~~~~~~~~~~~~~~i-~~~~DG~lY~~~~~~G~l~~~~~  120 (613)
                      .+..++.++.||.++..|..+|+..+    .+.. ..+|..-  ...+.+...+.+ .++.||.+..+|..+|+. ...+
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~  317 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV--AWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAV  317 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEE--EECTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEE
T ss_pred             CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeee--eeCCCcccEEEEEeecCCCEEEEEeCCcccc-ceee
Confidence            56788999999999999999887543    2221 2333332  111222222333 467899999999999988 5555


Q ss_pred             cHHHHhhhCceeecCC-cEEEEe--ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccc
Q 007199          121 SAEEYIRRMPYISKDG-GVTLGA--MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNL  197 (613)
Q Consensus       121 ~~~~~v~~sP~~~~dg-~v~~Gs--~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (613)
                      .....+.+ .+...++ .+++++  .|++++..|..||+.+.++..-..    ++       .+      -.++|.    
T Consensus       318 ~~~~~v~~-~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~----~V-------~~------l~~spd----  375 (420)
T 4gga_A          318 DAHSQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS----RV-------LS------LTMSPD----  375 (420)
T ss_dssp             ECSSCEEE-EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS----CE-------EE------EEECTT----
T ss_pred             ccccceee-eeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC----CE-------EE------EEEcCC----
Confidence            55444433 2233343 455544  789999999999999999853111    00       00      011111    


Q ss_pred             cccccEEEEEeeeeEEEEEeCCC
Q 007199          198 KRIRQLVYIMRTDYVLQSTSQDS  220 (613)
Q Consensus       198 ~~~~~~v~igr~d~~l~a~d~~~  220 (613)
                         ...|+-|..|++|+.+|-..
T Consensus       376 ---g~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          376 ---GATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             ---SSCEEEEETTTEEEEECCSC
T ss_pred             ---CCEEEEEecCCeEEEEECCC
Confidence               23677789999999877543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.11  E-value=0.056  Score=54.38  Aligned_cols=113  Identities=7%  Similarity=0.036  Sum_probs=66.2

Q ss_pred             CCEEEEEecC-------CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC-Cce-eee
Q 007199           48 PDVALVAALD-------GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF-GKM-KKL  118 (613)
Q Consensus        48 ~~~v~v~t~d-------G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~-G~l-~~~  118 (613)
                      ++.+|+++.+       +.||.+|..+|+..--........+   .....+...+|+....++.||.++..+ |.. ..+
T Consensus       145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~  221 (333)
T 2dg1_A          145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG---IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF  221 (333)
T ss_dssp             TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE---EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE
T ss_pred             CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccc---eEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc
Confidence            4667777763       6788888877765432211111111   112333335777777789999999863 442 111


Q ss_pred             ----cccHHH-HhhhCceeecCCcEEEEee-cceEEEEECCCCcEEEEEecC
Q 007199          119 ----SSSAEE-YIRRMPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       119 ----~~~~~~-~v~~sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~  164 (613)
                          ...... ..-...+++.||.+|++.. ++.++.+|+ +|+.+..+...
T Consensus       222 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          222 GATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             EEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             cceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence                111110 0112235667899999885 478999999 68888888644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.11  E-value=0.16  Score=52.37  Aligned_cols=154  Identities=12%  Similarity=0.098  Sum_probs=92.3

Q ss_pred             CCCCEEEEEec--CCcEEEEeCCCCeeeEE-eeCCCc--ee-ec-------------------c----c--------ccc
Q 007199           46 PEPDVALVAAL--DGTIHLVDTKLGKIRWS-FGTGRP--IY-SS-------------------Y----Q--------ASF   88 (613)
Q Consensus        46 ~~~~~v~v~t~--dG~l~ald~~tG~~~W~-~~~~~~--i~-s~-------------------~----~--------~~~   88 (613)
                      ..+..+|+++.  +++|..+|..+++++-+ +..++.  +. .+                   .    .        ...
T Consensus       117 pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~  196 (361)
T 2oiz_A          117 TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF  196 (361)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred             CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence            36789999985  57999999999999877 554321  00 00                   0    0        000


Q ss_pred             C-----------CCCCeEEEecCCCCeEEEEecCCCcee---eecccHHHH--hhhCc------eeecC-CcEEEEee--
Q 007199           89 N-----------SNASEFYLDVDEDWELYFHSKRFGKMK---KLSSSAEEY--IRRMP------YISKD-GGVTLGAM--  143 (613)
Q Consensus        89 ~-----------~~~~~~~i~~~~DG~lY~~~~~~G~l~---~~~~~~~~~--v~~sP------~~~~d-g~v~~Gs~--  143 (613)
                      +           .+...+++.. .+|.+|.+|...+...   .|+......  +.-.|      +++.| +.+|+...  
T Consensus       197 ~~~~~~~~~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~  275 (361)
T 2oiz_A          197 SVKDDPIFIAPALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD  275 (361)
T ss_dssp             CTTTSCBCSCCEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred             cCCCCceEEEecccCCEEEEEe-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence            0           0011233333 4788888888665542   233322211  11112      34545 67888653  


Q ss_pred             ---------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEE
Q 007199          144 ---------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQ  214 (613)
Q Consensus       144 ---------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~  214 (613)
                               ..+++.+|++|++++.++..+. ..           .+       .++|.       ...+|++.. ..|+
T Consensus       276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~-----------~i-------a~spd-------g~~l~v~n~-~~v~  328 (361)
T 2oiz_A          276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-AL-----------SM-------TIDQQ-------RNLMLTLDG-GNVN  328 (361)
T ss_dssp             CCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CC-----------EE-------EEETT-------TTEEEEECS-SCEE
T ss_pred             CCcccccCCCceEEEEECCCCcEEEEEecCC-ee-----------EE-------EECCC-------CCEEEEeCC-CeEE
Confidence                     4589999999999999987664 11           00       12221       337888876 9999


Q ss_pred             EEeCCCC--ceEEEE
Q 007199          215 STSQDSG--EVLWNV  227 (613)
Q Consensus       215 a~d~~~G--~~~Wn~  227 (613)
                      .+|..+|  +++=++
T Consensus       329 v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          329 VYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEECSSSSCEEEEEE
T ss_pred             EEECCCCcceeeEEe
Confidence            9999999  776554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.10  E-value=0.027  Score=55.98  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=89.3

Q ss_pred             CCEEEEEecCCcEEEEeCCCC---------eeeEEeeC-CCceeeccccccCCCC-CeEEEecCCCCeEEEEecCCCcee
Q 007199           48 PDVALVAALDGTIHLVDTKLG---------KIRWSFGT-GRPIYSSYQASFNSNA-SEFYLDVDEDWELYFHSKRFGKMK  116 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG---------~~~W~~~~-~~~i~s~~~~~~~~~~-~~~~i~~~~DG~lY~~~~~~G~l~  116 (613)
                      +..+++|+.||+|+..|..+|         +...++.. ..+|.+-   ....+. ..+++.++.||.++.+|..+++. 
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-  146 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV---KFAPAHLGLKLACLGNDGILRLYDALEPSD-  146 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEE---EECCGGGCSEEEEEETTCEEEEEECSSTTC-
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEE---EEcCCCCCcEEEEecCCCcEEEecCCChHH-
Confidence            678999999999999999988         55666653 2344432   111110 24667777799999999988765 


Q ss_pred             eecccHHHHh-----------------hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCc
Q 007199          117 KLSSSAEEYI-----------------RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKH  179 (613)
Q Consensus       117 ~~~~~~~~~v-----------------~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~  179 (613)
                      ...+.....+                 .-+|.......+.+|+.++.+...+..+|+........+..  .+..      
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~------  218 (351)
T 3f3f_A          147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK--SLIR------  218 (351)
T ss_dssp             TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC--SCEE------
T ss_pred             hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC--ccee------
Confidence            2222211111                 11111112456778999999988888888874444332210  0000      


Q ss_pred             cccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEE
Q 007199          180 VVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~W  225 (613)
                      .+       .+.|...   .....++.|..|+.|+.+|.+++....
T Consensus       219 ~~-------~~~p~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~  254 (351)
T 3f3f_A          219 SI-------SWAPSIG---RWYQLIATGCKDGRIRIFKITEKLSPL  254 (351)
T ss_dssp             EE-------EECCCSS---CSSEEEEEEETTSCEEEEEEEECC---
T ss_pred             EE-------EECCCCC---CcceEEEEEcCCCeEEEEeCCCCcCcc
Confidence            00       1111100   001478889999999998877665443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.07  E-value=0.027  Score=58.94  Aligned_cols=163  Identities=15%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee---------CCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce--
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG---------TGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM--  115 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~---------~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l--  115 (613)
                      .+..++.| .||+|+..|..++...+..-         ...+|.+-   ....+...+++.++.||.++.+|.++++.  
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA---EFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE---EECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE---EECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            44566666 89999999999766666531         12233322   11222214677777899999999988874  


Q ss_pred             ---eeecccHHH-----------HhhhCceeecCCcEE-EEeecceEEEEECCC-CcEEEEEecCCCCCCCCCcCCCCCc
Q 007199          116 ---KKLSSSAEE-----------YIRRMPYISKDGGVT-LGAMKTSVFLVDVKS-GRVVDNYVLDFSASTPGFQSDENKH  179 (613)
Q Consensus       116 ---~~~~~~~~~-----------~v~~sP~~~~dg~v~-~Gs~~~~~~~vD~~t-G~~~~~~~~~~~~~~~~~~~~~~~~  179 (613)
                         +.+.-....           .| .+..++.||..+ +|+. +++...|..+ |+.+..+.......+.-....+...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSI-SDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCE-EEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             ceeeEeccCCCccccccccccCceE-EEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence               333322210           12 223345567544 5666 9999999998 8888777644321100000000000


Q ss_pred             cccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          180 VVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      ..  .-..-.++|       .+..|+.|..|+.|+.+|..+|+..
T Consensus       342 i~--~~~~~~~s~-------~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          342 IF--DKFECCWNG-------SDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             GG--CCCCEEECT-------TSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             cc--cceEEEECC-------CCCEEEEeccCCEEEEEEcCCCcce
Confidence            00  000001111       1347889999999999999998765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.06  E-value=0.063  Score=59.61  Aligned_cols=149  Identities=10%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC--------CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT--------GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL  118 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~--------~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~  118 (613)
                      .+.++..|+.||+|+..|..+|+.+-++..        ..+|.+-   ....+. ..++-++.||.+..+|..+|+. .-
T Consensus       201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v---~~spdg-~~l~s~s~D~~v~lWd~~~~~~-~~  275 (611)
T 1nr0_A          201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL---TWSPDG-TKIASASADKTIKIWNVATLKV-EK  275 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE---EECTTS-SEEEEEETTSEEEEEETTTTEE-EE
T ss_pred             CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEE---EECCCC-CEEEEEeCCCeEEEEeCCCCce-ee
Confidence            567888899999999999999998887742        2234332   112222 4667778899999999998876 33


Q ss_pred             cccHHHHhhhCc--eeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          119 SSSAEEYIRRMP--YISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       119 ~~~~~~~v~~sP--~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .+.....+....  +...+..+..++.++++...|+.+|+....+..-..    ++.      .+       .++|    
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~----~v~------~l-------~~sp----  334 (611)
T 1nr0_A          276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK----AIT------AL-------SSSA----  334 (611)
T ss_dssp             EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS----CEE------EE-------EECT----
T ss_pred             eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC----CEE------EE-------EEeC----
Confidence            332221111111  112255688899999999999999987765532111    000      00       1111    


Q ss_pred             ccccccEEEEEeeeeEEEEEeCCCCceE
Q 007199          197 LKRIRQLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       197 ~~~~~~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                         ....|+.+..|++|+.+|..+|...
T Consensus       335 ---dg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          335 ---DGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             ---TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ---CCCEEEEEeCCCcEEEEECCCCcee
Confidence               1347888999999999999888643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.05  E-value=0.038  Score=56.78  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEec-CC--cEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeec
Q 007199           44 LPPEPDVALVAAL-DG--TIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLS  119 (613)
Q Consensus        44 ~~~~~~~v~v~t~-dG--~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~  119 (613)
                      -++.+..+++++. ||  .||.+|..+|+.+-...... .+++.   ....+...+++.. .|+.||.+|..+|+. +.-
T Consensus        43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~---~~spdg~~l~~~~-~~~~l~~~d~~~g~~-~~~  117 (388)
T 3pe7_A           43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGG---FLSPDDDALFYVK-DGRNLMRVDLATLEE-NVV  117 (388)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSC---EECTTSSEEEEEE-TTTEEEEEETTTCCE-EEE
T ss_pred             CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccce---EEcCCCCEEEEEe-CCCeEEEEECCCCcc-eee
Confidence            3456676776766 77  49999999999876553322 12111   1223333444444 488999999999987 333


Q ss_pred             ccHHHH-hhh-CceeecCCcEEEEe-----------------------ecceEEEEECCCCcEEEEEec
Q 007199          120 SSAEEY-IRR-MPYISKDGGVTLGA-----------------------MKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       120 ~~~~~~-v~~-sP~~~~dg~v~~Gs-----------------------~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      +..+.- +.. ....+.||..+++.                       .+..+|.+|+.||+.......
T Consensus       118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~  186 (388)
T 3pe7_A          118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE  186 (388)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred             eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence            333221 111 11235577777642                       347899999999998766543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.05  E-value=0.035  Score=53.84  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=75.6

Q ss_pred             CCEEEE-E-ecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           48 PDVALV-A-ALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        48 ~~~v~v-~-t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      ++.+|+ + +.+|.|+.+|..++.. +.+...+ .........+.+ ..+|+... ++.|+.+|..++....+...-...
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~  109 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNG-LYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNY  109 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC------EECCCCS-CCSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCEECCCCSCSS
T ss_pred             CCCEEEEccCCCCcEEEecCCCccc-ceEeeCC-cCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEeeeecCCcCC
Confidence            456777 6 5778999998776653 3332211 111111112222 24788777 899999998765553333211000


Q ss_pred             hhhCceeecCCcEEEEe-ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISKDGGVTLGA-MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs-~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      . ..-++..||.+|++. .++.++.+|..++........+  .. .|.     + .        .++        .++.+
T Consensus       110 p-~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~-~p~-----~-i--------~~~--------~~g~l  163 (270)
T 1rwi_B          110 P-EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--LN-DPD-----G-V--------AVD--------NSGNV  163 (270)
T ss_dssp             E-EEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS--CC-SCC-----C-E--------EEC--------TTCCE
T ss_pred             C-cceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc--CC-Cce-----e-E--------EEe--------CCCCE
Confidence            1 122345578899875 4578888887666544321110  00 000     0 0        111        13468


Q ss_pred             EEEee-eeEEEEEeCCCCce
Q 007199          205 YIMRT-DYVLQSTSQDSGEV  223 (613)
Q Consensus       205 ~igr~-d~~l~a~d~~~G~~  223 (613)
                      |++.. +..|+.+|.+++..
T Consensus       164 ~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCCE
T ss_pred             EEEECCCCEEEEEecCCCce
Confidence            88765 57899999876543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.02  Score=67.16  Aligned_cols=160  Identities=11%  Similarity=0.049  Sum_probs=100.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ...++.+|+.||+|+..|..+++....+....+|.+-  ...+ +  .+++-++.||.+..+|..+|+. ...+.....|
T Consensus        28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l--~fsp-g--~~L~S~s~D~~v~lWd~~~~~~-~~~~~~~~~V  101 (902)
T 2oaj_A           28 TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEM--RFVK-G--IYLVVINAKDTVYVLSLYSQKV-LTTVFVPGKI  101 (902)
T ss_dssp             TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEE--EEET-T--TEEEEEETTCEEEEEETTTCSE-EEEEECSSCE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEE--EEcC-C--CEEEEEECcCeEEEEECCCCcE-EEEEcCCCCE
Confidence            5678999999999999999999988877655566543  1112 2  3666777899999999998876 3333322222


Q ss_pred             hhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCC--CCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          127 RRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSAS--TPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       127 ~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .+ -.++.|| .+++|+.++++...|..+|++. .+.......  ..+   ......+.    .-.+.|.      ..+.
T Consensus       102 ~~-v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~---~~h~~~V~----sl~~sp~------~~~~  166 (902)
T 2oaj_A          102 TS-IDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFP---AARLSPIV----SIQWNPR------DIGT  166 (902)
T ss_dssp             EE-EECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCS---SSCCCCCC----EEEEETT------EEEE
T ss_pred             EE-EEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccccccc---ccCCCCeE----EEEEccC------CCCE
Confidence            21 2223344 5778999999999999999874 332210000  000   00000000    0011110      1247


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +.+|..|+.| .+|.++++..-.+.
T Consensus       167 l~~g~~dg~v-lWd~~~~~~~~~~~  190 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEIKQSFI  190 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEEEEEEC
T ss_pred             EEEEeCCCcE-EEECCCCceEEEEe
Confidence            8899999999 99999988776654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.98  E-value=0.097  Score=54.12  Aligned_cols=112  Identities=11%  Similarity=0.032  Sum_probs=68.6

Q ss_pred             eEEEecCCCCeEEEEecCCCceeeecccHHH-HhhhCc---eeecCCcEE-------------EEeecceEEEEECCCCc
Q 007199           94 EFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-YIRRMP---YISKDGGVT-------------LGAMKTSVFLVDVKSGR  156 (613)
Q Consensus        94 ~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-~v~~sP---~~~~dg~v~-------------~Gs~~~~~~~vD~~tG~  156 (613)
                      .+++-++.|+.+..+|.++|+. ...+.... .+. +-   +++.||.++             .|+.|.++...|++||+
T Consensus       194 ~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~-~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQA-SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             TEEEEEETTSEEEEEETTTCCE-EEEEECCC---C-CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             ceEEEecCCCcEEEEECCCCcE-EEEEcCCCccee-eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            5777789999999999999987 44443221 121 22   355577543             48899999999999999


Q ss_pred             EEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      .+..+...-+       ....+         ...+.. .    ....+.-|..|++|+.+|..+|+.+=+++
T Consensus       272 ~l~v~~~~~p-------~Gh~~---------~~lsg~-~----sg~~lASgS~DgTIkIWDl~tGk~l~tL~  322 (356)
T 2w18_A          272 SVGVMLYCLP-------PGQAG---------RFLEGD-V----KDHCAAAILTSGTIAIWDLLLGQCTALLP  322 (356)
T ss_dssp             EEEEEEECCC-------TTCCC---------CEEEEE-E----ETTEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEEEEEeecc-------CCCcc---------eeEccc-c----CCCEEEEEcCCCcEEEEECCCCcEEEEec
Confidence            9876642110       00000         011000 0    01245667789999999999998777654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.97  E-value=0.071  Score=60.24  Aligned_cols=112  Identities=16%  Similarity=0.199  Sum_probs=69.4

Q ss_pred             CCCCEEEEEec-CC-----cEEEEeCCCCeeeEEeeCCCce----------------------eeccccccCCCCCeEEE
Q 007199           46 PEPDVALVAAL-DG-----TIHLVDTKLGKIRWSFGTGRPI----------------------YSSYQASFNSNASEFYL   97 (613)
Q Consensus        46 ~~~~~v~v~t~-dG-----~l~ald~~tG~~~W~~~~~~~i----------------------~s~~~~~~~~~~~~~~i   97 (613)
                      ..+..+++++. ||     +|+..|..+|+..-.+.....-                      ..-.......|...++ 
T Consensus        46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~-  124 (741)
T 2ecf_A           46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLL-  124 (741)
T ss_dssp             TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEE-
T ss_pred             cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEE-
Confidence            46677888887 88     9999999999987666432100                      0000111223332333 


Q ss_pred             ecCCCCeEEEEecCCC---ceeeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEE
Q 007199           98 DVDEDWELYFHSKRFG---KMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNY  161 (613)
Q Consensus        98 ~~~~DG~lY~~~~~~G---~l~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~  161 (613)
                      ..+ ++.||.+|..+|   ..+.+... ... ..+|.++-||..++-..++++|.+|..+|+.....
T Consensus       125 ~~~-~~~i~~~d~~~~~~~~~~~l~~~-~~~-~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          125 FPL-GGELYLYDLKQEGKAAVRQLTHG-EGF-ATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             EEE-TTEEEEEESSSCSTTSCCBCCCS-SSC-EEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             EEe-CCcEEEEECCCCCcceEEEcccC-Ccc-cccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            333 499999999988   55333322 112 24577888987443334679999999999887544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.95  E-value=0.02  Score=60.51  Aligned_cols=148  Identities=13%  Similarity=0.069  Sum_probs=87.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC---CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT---GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~---~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .+.+|.+|+.||+|+.-|..+++..-.+..   .++|.+-  ...+.+ ..+++-++.||.+..+|..++.+ +......
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l--~f~p~~-~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~  206 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGL--KFNPLN-TNQFYASSMEGTTRLQDFKGNIL-RVFASSD  206 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEE--EECSSC-TTEEEEECSSSCEEEEETTSCEE-EEEECCS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEE--EEeCCC-CCEEEEEeCCCEEEEeeccCCce-eEEeccC
Confidence            446888999999999999888775544432   2344332  111112 24777888899999999987665 3222211


Q ss_pred             H-Hh-hhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          124 E-YI-RRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       124 ~-~v-~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                      . .+ ..+-.++.|| .+++|+.+++++..|.. |+.++++..-...    +     . .+       .+.|.      .
T Consensus       207 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~----v-----~-~v-------~~~p~------~  262 (435)
T 4e54_B          207 TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKK----V-----T-HV-------ALNPC------C  262 (435)
T ss_dssp             SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSC----E-----E-EE-------EECTT------C
T ss_pred             CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccce----E-----E-ee-------eecCC------C
Confidence            1 11 1223344465 45679999999999975 5555444321110    0     0 00       01111      1


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCc
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~  222 (613)
                      +..+..|..|+.|+.+|.++++
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCC
T ss_pred             ceEEEEecCcceeeEEeccccc
Confidence            2367778899999998877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.93  E-value=0.021  Score=56.85  Aligned_cols=101  Identities=8%  Similarity=-0.021  Sum_probs=58.3

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCceeeccccccC----CCCCeEEEecCCCCeEEEEecC-CCcee----eecccHH--HHh
Q 007199           58 GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFN----SNASEFYLDVDEDWELYFHSKR-FGKMK----KLSSSAE--EYI  126 (613)
Q Consensus        58 G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~----~~~~~~~i~~~~DG~lY~~~~~-~G~l~----~~~~~~~--~~v  126 (613)
                      +.|+.+|.. |+............+   ....    .+...+|+....++.|+.++.. +|++.    ...+...  ...
T Consensus       153 ~~l~~~~~~-g~~~~~~~~~~~~~~---i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T 1pjx_A          153 GSIYCFTTD-GQMIQVDTAFQFPNG---IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEEESSEEE---EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CeEEEECCC-CCEEEeccCCCCcce---EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence            578888876 766543321111111   0111    2222467777778999999875 45431    1111111  111


Q ss_pred             hhCceeecCCcEEEEee-cceEEEEECCCCcEEEEEec
Q 007199          127 RRMPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~  163 (613)
                       ..-+++.||.+|++.. ++.++.+|++||+.+..+..
T Consensus       229 -~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~  265 (314)
T 1pjx_A          229 -DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC  265 (314)
T ss_dssp             -EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred             -CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence             1234567899999874 67899999999998777754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.88  E-value=0.07  Score=57.99  Aligned_cols=147  Identities=14%  Similarity=0.208  Sum_probs=91.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      ....+++++.||.|+..| .+|+.+.++... .+|.+-   ....+ +.+++.++.||.++.+|.. |+. ...+... .
T Consensus       396 dg~~l~~~~~d~~v~~~~-~~~~~~~~~~~~~~~v~~~---~~s~d-~~~l~~~~~d~~v~~w~~~-~~~-~~~~~~~~~  468 (577)
T 2ymu_A          396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPD-DQTIASASDDKTVKLWNRN-GQL-LQTLTGHSS  468 (577)
T ss_dssp             TSSCEEEEETTSEEEEEC-TTCCEEEEEECCSSCEEEE---EECTT-SSEEEEEETTSEEEEEETT-SCE-EEEEECCSS
T ss_pred             CCCEEEEEeCCCEEEEEe-CCCCEEEEecCCCCCeEEE---EECCC-CCEEEEEcCCCEEEEEECC-CCE-EEEEcCCCC
Confidence            556788899999999999 468888877643 344332   11122 2366667779999999964 554 2222221 1


Q ss_pred             HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .| .+-+++.||. +.+|+.|++++.-| .+|+.+..+.......           .+      -.++|.       ...
T Consensus       469 ~v-~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v-----------~~------l~~s~d-------g~~  522 (577)
T 2ymu_A          469 SV-RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV-----------RG------VAFSPD-------GQT  522 (577)
T ss_dssp             CE-EEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCE-----------EE------EEECTT-------SSC
T ss_pred             CE-EEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCE-----------EE------EEEcCC-------CCE
Confidence            12 2233455665 55699999999999 5799998886422110           00      011111       236


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      |..+..|+.|+.+|. +|+..-.+
T Consensus       523 l~s~~~dg~v~lwd~-~~~~~~~~  545 (577)
T 2ymu_A          523 IASASDDKTVKLWNR-NGQLLQTL  545 (577)
T ss_dssp             EEEEETTSEEEEECT-TSCEEEEE
T ss_pred             EEEEECcCEEEEEeC-CCCEEEEE
Confidence            778999999999995 67665443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.87  E-value=0.0071  Score=62.08  Aligned_cols=147  Identities=7%  Similarity=-0.014  Sum_probs=78.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCe---eeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCc----eeee
Q 007199           47 EPDVALVAALDGTIHLVDTKLGK---IRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGK----MKKL  118 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~---~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~----l~~~  118 (613)
                      .+..++.++.||+|+..|..+|+   ..-.+.. ..+|..-   ....+. ..++.++.||.++.+|..+++    .+.+
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  141 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV---RWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHL  141 (377)
T ss_dssp             TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE---ECCTTS-SCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE---EECCCC-CEEEEEecCCeEEEEEECCcccceeeeEe
Confidence            55789999999999999999988   4444432 2344332   111222 355666779999999998776    2222


Q ss_pred             cccHHHHhhhCceeecCC-cEEEEeecceEEEEECCC------------------CcEEEEEecCCCCCCCCCcCCCCCc
Q 007199          119 SSSAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKS------------------GRVVDNYVLDFSASTPGFQSDENKH  179 (613)
Q Consensus       119 ~~~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~t------------------G~~~~~~~~~~~~~~~~~~~~~~~~  179 (613)
                      .-.-...|. +..++.|| .+++|+.|++++..|..+                  |+.+..+...+.+.           
T Consensus       142 ~~~h~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------  209 (377)
T 3dwl_C          142 KRPLRSTIL-SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVH-----------  209 (377)
T ss_dssp             CSSCCSCEE-EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEE-----------
T ss_pred             ecccCCCeE-EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEE-----------
Confidence            211122221 22344455 467899999999999864                  44444331000000           


Q ss_pred             cccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCce
Q 007199          180 VVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~  223 (613)
                       +      -.++|       ....|+.|..|+.|+.+|..+|+.
T Consensus       210 -~------~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          210 -A------VGFSP-------SGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             -E------EEECT-------TSSCEEEEETTTEEC-CEECSTTS
T ss_pred             -E------EEECC-------CCCEEEEEeCCCcEEEEECCCCCC
Confidence             0      01111       133688899999999999888765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.87  E-value=0.095  Score=53.66  Aligned_cols=106  Identities=13%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCCeeeEEe--eC----CCceeecccccc---CCCCCeEEEe-c------------CCCC
Q 007199           47 EPDVALVAA-LDGTIHLVDTKLGKIRWSF--GT----GRPIYSSYQASF---NSNASEFYLD-V------------DEDW  103 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~tG~~~W~~--~~----~~~i~s~~~~~~---~~~~~~~~i~-~------------~~DG  103 (613)
                      .++.+|+|+ .+|+|+++|+..|.. ..+  +.    +.+-+..+-...   +.+ ..+++. .            +.+.
T Consensus        23 ~~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~  100 (334)
T 2p9w_A           23 TRQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGAS  100 (334)
T ss_dssp             TTTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCC
T ss_pred             CCCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccccccCCCC
Confidence            469999999 589999999986633 233  21    222222111112   222 345542 2            1278


Q ss_pred             eEEEEecC---CCceeeecccHHHHhhh-------C------ceeecCCcEEE-Eeec-ceEEEEECCCCc
Q 007199          104 ELYFHSKR---FGKMKKLSSSAEEYIRR-------M------PYISKDGGVTL-GAMK-TSVFLVDVKSGR  156 (613)
Q Consensus       104 ~lY~~~~~---~G~l~~~~~~~~~~v~~-------s------P~~~~dg~v~~-Gs~~-~~~~~vD~~tG~  156 (613)
                      .|+++|..   +|+. .|...+......       .      -++..+|.+|+ ++.. +.++-||+. |+
T Consensus       101 ~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~  169 (334)
T 2p9w_A          101 SFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GK  169 (334)
T ss_dssp             EEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SC
T ss_pred             EEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CC
Confidence            89999998   8988 887777655443       2      13466899998 9999 999999988 65

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.017  Score=66.16  Aligned_cols=163  Identities=9%  Similarity=0.048  Sum_probs=93.7

Q ss_pred             CCCEEEEEecCCcEEEEeCC--CCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee-eeccc-
Q 007199           47 EPDVALVAALDGTIHLVDTK--LGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK-KLSSS-  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~--tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~-~~~~~-  121 (613)
                      .+..+++|+.||+|+..|..  +++...++.. ..+|.+-  ...+.....+++.++.||.++.+|..+|+.. ...+. 
T Consensus        20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l--~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~   97 (753)
T 3jro_A           20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV   97 (753)
T ss_dssp             SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEE--EECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEE--EecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC
Confidence            45789999999999999877  6677777764 3455443  1111111246777778999999999888521 12221 


Q ss_pred             HHHHhhhCceeecC---CcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc--
Q 007199          122 AEEYIRRMPYISKD---GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN--  196 (613)
Q Consensus       122 ~~~~v~~sP~~~~d---g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  196 (613)
                      -...|. +-.++.+   ..+++|+.+++++..|..++.........+..  .++.      .+       ...|....  
T Consensus        98 h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~--~~v~------~l-------~~~p~~~~~~  161 (753)
T 3jro_A           98 HSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA--IGVN------SA-------SWAPATIEED  161 (753)
T ss_dssp             CSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS--SCEE------EE-------EECCCC----
T ss_pred             CCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC--CceE------EE-------EecCcccccc
Confidence            111221 1223333   35778999999999999988432222111100  0000      00       01110000  


Q ss_pred             ----ccccccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          197 ----LKRIRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       197 ----~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                          ....+..++.|..|+.|+.+|.+++...|..
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence                0001347889999999999999888766654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.85  E-value=0.024  Score=57.78  Aligned_cols=106  Identities=11%  Similarity=0.054  Sum_probs=69.1

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ...++.++.||+|+..| .+++...++.. ..+|.+-   ....+ ..+++.++.||.++.+|..+.......+.....|
T Consensus       184 ~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~---~~s~~-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v  258 (343)
T 2xzm_R          184 APYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL---SISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI  258 (343)
T ss_dssp             CCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE---EECTT-SSEEEEEETTCEEEEEESSCCSSCSEEEECSSCE
T ss_pred             CCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE---EECCC-CCEEEEEcCCCeEEEEECCCCcccceeecCCCcE
Confidence            36889999999999999 56788877764 2344432   11222 2466777789999999984332212222222222


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEE
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVD  159 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~  159 (613)
                       .+-+++.|+.+++++.++.+...|..+++...
T Consensus       259 -~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          259 -NQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             -EEEEECSSSCEEEEEESSCEEEEESSSCCSCS
T ss_pred             -EEEEECCCCCEEEEECCCCEEEEEeCCCCCCc
Confidence             22334557778888888899999998887655

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.85  E-value=0.074  Score=59.79  Aligned_cols=146  Identities=13%  Similarity=0.187  Sum_probs=86.8

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC-----CceeeecccHH
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF-----GKMKKLSSSAE  123 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~-----G~l~~~~~~~~  123 (613)
                      +.++++ .||+|+..|..+|+.+-.......+.+.   ....++..+++  ..|++||.++..+     |+..++...-.
T Consensus        93 ~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~---~~SpdG~~la~--~~~~~i~v~~~~~~~~~~g~~~~~~~~~~  166 (706)
T 2z3z_A           93 GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASL---DFSPVGDRVAY--VRNHNLYIARGGKLGEGMSRAIAVTIDGT  166 (706)
T ss_dssp             TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTC---EECTTSSEEEE--EETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred             CeEEEE-ECCEEEEEECCCCceEEccCCcccccCC---cCCCCCCEEEE--EECCeEEEEecCcccccCCCcEEeccCCC
Confidence            556555 6799999999999887655443433322   12223223333  2589999999988     87744333222


Q ss_pred             HHh-------------hhCceeecCCc-EEEEe---------------------------------ecceEEEEECCCCc
Q 007199          124 EYI-------------RRMPYISKDGG-VTLGA---------------------------------MKTSVFLVDVKSGR  156 (613)
Q Consensus       124 ~~v-------------~~sP~~~~dg~-v~~Gs---------------------------------~~~~~~~vD~~tG~  156 (613)
                      .-+             ..++..+-||. +++++                                 .+.+++.+|..+|+
T Consensus       167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~  246 (706)
T 2z3z_A          167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK  246 (706)
T ss_dssp             TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred             CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence            212             25667777885 55565                                 45789999999998


Q ss_pred             EEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeee-----EEEEEeCCCCc
Q 007199          157 VVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDY-----VLQSTSQDSGE  222 (613)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~-----~l~a~d~~~G~  222 (613)
                      ..+........          . .        ....... +  -...|+++..|.     .|+.+|..+|+
T Consensus       247 ~~~~~~~~~~~----------~-~--------~~~~~~s-p--dg~~l~~~~~~~~~~~~~v~~~d~~~g~  295 (706)
T 2z3z_A          247 TVYLQTGEPKE----------K-F--------LTNLSWS-P--DENILYVAEVNRAQNECKVNAYDAETGR  295 (706)
T ss_dssp             EEECCCCSCTT----------C-E--------EEEEEEC-T--TSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred             eEeeccCCCCc----------e-e--------EeeEEEE-C--CCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence            77544211000          0 0        0000100 0  123688877774     99999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=95.84  E-value=0.1  Score=53.86  Aligned_cols=153  Identities=12%  Similarity=0.072  Sum_probs=89.4

Q ss_pred             CCCEEEEEe--cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecc-cHH
Q 007199           47 EPDVALVAA--LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS-SAE  123 (613)
Q Consensus        47 ~~~~v~v~t--~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~-~~~  123 (613)
                      .+..+.++|  .||+|+..|..+|+.+.+++.+..|.+-   ....++ .+++.++ |+.+..++..+|....... ...
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v---~fspdg-~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~  218 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDL---HFSTDG-KVVAYIT-GSSLEVISTVTGSCIARKTDFDK  218 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEE---EECTTS-SEEEEEC-SSCEEEEETTTCCEEEEECCCCT
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEE---EEccCC-ceEEecc-ceeEEEEEeccCcceeeeecCCC
Confidence            344555555  6899999999999999999887777653   122222 3555556 7778888888777622221 111


Q ss_pred             -HHhhhCceeecCCc-EEEEeecc----eEEEEECCCCcEEEE--EecCCCCCCCCCcCCCCCccccCCCcccccccccc
Q 007199          124 -EYIRRMPYISKDGG-VTLGAMKT----SVFLVDVKSGRVVDN--YVLDFSASTPGFQSDENKHVVPVDGYEELVESGVG  195 (613)
Q Consensus       124 -~~v~~sP~~~~dg~-v~~Gs~~~----~~~~vD~~tG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (613)
                       ..| .+-.++.||. +.+++.++    ++...|..++...-.  ....+..  .++       .+      -.++|   
T Consensus       219 ~~~v-~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~V-------~~------~~~Sp---  279 (365)
T 4h5i_A          219 NWSL-SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF--KGI-------TS------MDVDM---  279 (365)
T ss_dssp             TEEE-EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC--SCE-------EE------EEECT---
T ss_pred             CCCE-EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC--CCe-------Ee------EEECC---
Confidence             122 2233444664 44577665    566666665543211  1111100  000       00      01121   


Q ss_pred             cccccccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          196 NLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       196 ~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                          ....|..|..|+.|+.+|..+|+.+.++
T Consensus       280 ----dg~~lasgs~D~~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          280 ----KGELAVLASNDNSIALVKLKDLSMSKIF  307 (365)
T ss_dssp             ----TSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ----CCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence                1347888999999999999999887664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.83  E-value=0.028  Score=64.70  Aligned_cols=146  Identities=7%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             CCCE-EEEEecCCcEEEEeCCCCeeeEEeeCCC------ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeec
Q 007199           47 EPDV-ALVAALDGTIHLVDTKLGKIRWSFGTGR------PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLS  119 (613)
Q Consensus        47 ~~~~-v~v~t~dG~l~ald~~tG~~~W~~~~~~------~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~  119 (613)
                      .++. +++||.+|.|+.+|..+|+. +.+....      .|++-    ..+..+.++++..  +.||.+++.+++.+...
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i----~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~  487 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAI----LPDGEGNLWLGTL--SALVRFNPEQRSFTTIE  487 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEE----EECSSSCEEEEES--SCEEEEETTTTEEEECC
T ss_pred             CCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEE----EECCCCCEEEEec--CceeEEeCCCCeEEEcc
Confidence            3566 99999999999999999874 4454321      12221    1111124666554  56999999988774443


Q ss_pred             cc-----HH-HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccc
Q 007199          120 SS-----AE-EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESG  193 (613)
Q Consensus       120 ~~-----~~-~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (613)
                      ..     .. ..| .+-+...+|.+++|+. +.++.+|+++++.  .+......  ..+..         +....+..  
T Consensus       488 ~~~~~~~~~~~~i-~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~--~~l~~---------~~i~~i~~--  550 (795)
T 4a2l_A          488 KEKDGTPVVSKQI-TTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPV--SNVTK---------LFTNCIYE--  550 (795)
T ss_dssp             BCTTCCBCCCCCE-EEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCS--CGGGG---------SCEEEEEE--
T ss_pred             ccccccccCCceE-EEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCC--CCCCC---------CeeEEEEE--
Confidence            21     00 112 1223456899999998 7899999999887  44321000  00100         00000110  


Q ss_pred             cccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          194 VGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       194 ~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                           ..++.|+||... -|+.+|+++++
T Consensus       551 -----d~~g~lWigT~~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          551 -----ASNGIIWVGTRE-GFYCFNEKDKQ  573 (795)
T ss_dssp             -----CTTSCEEEEESS-CEEEEETTTTE
T ss_pred             -----CCCCCEEEEeCC-CceeECCCCCc
Confidence                 125689999876 68889988763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=95.81  E-value=0.038  Score=58.35  Aligned_cols=153  Identities=8%  Similarity=-0.012  Sum_probs=89.7

Q ss_pred             CCEEEEEecCCcEEEEeCCC----------CeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee
Q 007199           48 PDVALVAALDGTIHLVDTKL----------GKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK  116 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~t----------G~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~  116 (613)
                      ..++++++.||.|+..|..+          ++...++... .++.+-   ....+...+++.++.||.++.++..++...
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  217 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL---SWNPNLNGYLLSASDDHTICLWDINATPKE  217 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCE---EECTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEE---EeCCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence            35888889999999999876          6777777642 233322   122222237777888999999999874321


Q ss_pred             ee------cccHH-HHhhhCceeec-CC-cEEEEeecceEEEEECCCC---cEEEEEecCCCCCCCCCcCCCCCccccCC
Q 007199          117 KL------SSSAE-EYIRRMPYISK-DG-GVTLGAMKTSVFLVDVKSG---RVVDNYVLDFSASTPGFQSDENKHVVPVD  184 (613)
Q Consensus       117 ~~------~~~~~-~~v~~sP~~~~-dg-~v~~Gs~~~~~~~vD~~tG---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (613)
                      .+      .+... ..|.. -..+. ++ .+++|+.+++++..|..++   +.++.+.......           .+   
T Consensus       218 ~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v-----------~~---  282 (430)
T 2xyi_A          218 HRVIDAKNIFTGHTAVVED-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV-----------NC---  282 (430)
T ss_dssp             GGEEECSEEECCCSSCEEE-EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE-----------EE---
T ss_pred             CceeccceeecCCCCCEee-eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe-----------EE---
Confidence            11      11110 11111 11221 33 4557999999999999988   5666664221100           00   


Q ss_pred             CcccccccccccccccccEEEEEeeeeEEEEEeCCC-CceEEEE
Q 007199          185 GYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDS-GEVLWNV  227 (613)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~-G~~~Wn~  227 (613)
                         -.+.|.      ....++.|..|+.|+.+|.++ +..+..+
T Consensus       283 ---i~~~p~------~~~~l~tg~~dg~v~vwd~~~~~~~~~~~  317 (430)
T 2xyi_A          283 ---LSFNPY------SEFILATGSADKTVALWDLRNLKLKLHSF  317 (430)
T ss_dssp             ---EEECSS------CTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             ---EEeCCC------CCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence               011110      123678899999999999887 3434333

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.78  E-value=0.12  Score=52.67  Aligned_cols=68  Identities=15%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             CCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhh-----hCceeecCCc-EEEEeec--ce--EEEEECCCCcEEE
Q 007199           91 NASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIR-----RMPYISKDGG-VTLGAMK--TS--VFLVDVKSGRVVD  159 (613)
Q Consensus        91 ~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~-----~sP~~~~dg~-v~~Gs~~--~~--~~~vD~~tG~~~~  159 (613)
                      +...+|+.+..++.++.++..+|.++.+ .++.....     ...+++.||. +|++...  ++  +|-+|+.+|++..
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~-~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~  298 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEI-QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK  298 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEE-EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEe-EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE
Confidence            3345777777799999999887766222 22211110     2445777886 7776655  44  5556767898543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.70  E-value=0.082  Score=51.07  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             ecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC-CceeeecccHHHHhhhCceee
Q 007199           55 ALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF-GKMKKLSSSAEEYIRRMPYIS  133 (613)
Q Consensus        55 t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~-G~l~~~~~~~~~~v~~sP~~~  133 (613)
                      ..|++|+..|..+|+....+..+..+.+.   ....+. .+++.+. |+.||.+|..+ |+...+..........++.++
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~---~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPELFEAP---NWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCEEE---EECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CcceeEEEEeCCCCceeeeccCCcceEee---EECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            46899999999999999777655555543   112222 2344444 89999999998 877444322211222456777


Q ss_pred             cCCc-EEEEe----ecceEEEEECCCCcEE
Q 007199          134 KDGG-VTLGA----MKTSVFLVDVKSGRVV  158 (613)
Q Consensus       134 ~dg~-v~~Gs----~~~~~~~vD~~tG~~~  158 (613)
                      .||. +++++    ....+|.+|..+|+..
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~  123 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTPR  123 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCCE
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCceE
Confidence            7875 44555    2578999998888754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.69  E-value=0.036  Score=61.40  Aligned_cols=117  Identities=9%  Similarity=-0.036  Sum_probs=83.1

Q ss_pred             CeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCceeecCC-cEEEEeecceEEEEECC--CCcEEEEEecCCCCCC
Q 007199           93 SEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVK--SGRVVDNYVLDFSAST  169 (613)
Q Consensus        93 ~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~--tG~~~~~~~~~~~~~~  169 (613)
                      ..+|+....|++++.+|..++++ ...+.++..++ ...++.|| .+|+++.++.++.||..  |++++.+...+.... 
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v-~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-  243 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEI-KTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-  243 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCE-EEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-
T ss_pred             ceEEEEeCCCCeEEEEECCCCeE-EEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-
Confidence            35788888999999999999988 55555554443 34566677 58999999999999996  999999887653210 


Q ss_pred             CCCcCCCCCccccCCCcccccccccccccccccEEEEEeee-eEEEEEeCCCCceEEEEEecee
Q 007199          170 PGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTD-YVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d-~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                                .+       .+++-.. |  ....+|++... ..|..+|..+++++..+.+...
T Consensus       244 ----------~i-------a~s~~~~-p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~  287 (567)
T 1qks_A          244 ----------SI-------ETSKMEG-W--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM  287 (567)
T ss_dssp             ----------EE-------EECCSTT-C--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred             ----------ee-------EEccccC-C--CCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence                      00       1110000 0  02367776554 8999999999999999987653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.67  E-value=0.037  Score=53.70  Aligned_cols=108  Identities=6%  Similarity=-0.001  Sum_probs=62.4

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIR  127 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~  127 (613)
                      ++.+|+++.+|.|+.+|..++ ..+.+...+ .........+.+ ..+|+....++.|+.++..++.. .........--
T Consensus        77 ~g~l~v~~~~~~i~~~d~~~~-~~~~~~~~~-~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p  152 (270)
T 1rwi_B           77 AGTVYVTDFNNRVVTLAAGSN-NQTVLPFDG-LNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDP  152 (270)
T ss_dssp             TCCEEEEETTTEEEEECTTCS-CCEECCCCS-CSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSC
T ss_pred             CCCEEEEcCCCEEEEEeCCCc-eEeeeecCC-cCCCcceEECCC-CCEEEEECCCCEEEEEECCCcee-EeeccccCCCc
Confidence            466888888889999997654 455554322 111101112222 24777777788999997654443 22111110001


Q ss_pred             hCceeecCCcEEEEee-cceEEEEECCCCcEEE
Q 007199          128 RMPYISKDGGVTLGAM-KTSVFLVDVKSGRVVD  159 (613)
Q Consensus       128 ~sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~  159 (613)
                      ..-+++.||.+|++.. .+.++.+|+.++....
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  185 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV  185 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCceEe
Confidence            2233555788998875 5789999998776553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.65  E-value=0.044  Score=56.31  Aligned_cols=145  Identities=10%  Similarity=-0.005  Sum_probs=88.3

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCC-ceeeecccHHHHhh
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFG-KMKKLSSSAEEYIR  127 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G-~l~~~~~~~~~~v~  127 (613)
                      .++++|+.||+|...|..+|+.+-++....++.+-.   ...  + ..+... |+.++.+|..++ +. ...+..+   .
T Consensus        72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~---~~~--~-~~~~~~-~~~i~i~d~~~~~~~-~~~~~~~---~  140 (355)
T 3vu4_A           72 YVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLF---LSR--E-FIVVSY-GDVISVFKFGNPWKR-ITDDIRF---G  140 (355)
T ss_dssp             EEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEE---ECS--S-EEEEEE-TTEEEEEESSTTCCB-SSCCEEE---E
T ss_pred             EEEEEECCccEEEEEECCCCcEEEEEECCCceEEEE---EcC--C-EEEEEE-cCEEEEEECCCCcee-eEEeccC---C
Confidence            345778899999999999999999998777765541   111  1 233334 899999999887 44 3333221   1


Q ss_pred             hCceeecCCcEEE-EeecceEEEEECCCCcEE----------------EEEecCCCCCCCCCcCCCCCccccCCCccccc
Q 007199          128 RMPYISKDGGVTL-GAMKTSVFLVDVKSGRVV----------------DNYVLDFSASTPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       128 ~sP~~~~dg~v~~-Gs~~~~~~~vD~~tG~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                      ..-+++..-.++. |+.++++...|..+|+..                ..+..-..    ++       .+      -.+
T Consensus       141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~----~v-------~~------~~~  203 (355)
T 3vu4_A          141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN----PI-------KM------VRL  203 (355)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS----CE-------EE------EEE
T ss_pred             ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC----ce-------EE------EEE
Confidence            1112222222344 899999999999998722                22211000    00       00      011


Q ss_pred             ccccccccccccEEEEEeeeeE-EEEEeCCCCceEEEEE
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYV-LQSTSQDSGEVLWNVA  228 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~-l~a~d~~~G~~~Wn~t  228 (613)
                      +|       ....+.-|..|++ |+.+|..+|+....+.
T Consensus       204 s~-------~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~  235 (355)
T 3vu4_A          204 NR-------KSDMVATCSQDGTIIRVFKTEDGVLVREFR  235 (355)
T ss_dssp             CT-------TSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred             CC-------CCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            11       1347888999997 9999999999887765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.024  Score=64.94  Aligned_cols=160  Identities=11%  Similarity=0.022  Sum_probs=92.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCe--eeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-eeecccH-
Q 007199           48 PDVALVAALDGTIHLVDTKLGK--IRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-KKLSSSA-  122 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~--~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-~~~~~~~-  122 (613)
                      ++.++.|+.||+|+..|..+|+  ....+.. ..+|.+-  ...+......++.++.||.++.+|..++.. ....+.. 
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v--~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~  144 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV--QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE--EECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence            6899999999999999999997  5555543 3455443  111111024677777899999999987733 1111111 


Q ss_pred             HHHh---hhCcee----------ecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccc
Q 007199          123 EEYI---RRMPYI----------SKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEEL  189 (613)
Q Consensus       123 ~~~v---~~sP~~----------~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (613)
                      ...|   .-+|..          .++..+++|+.|++++..|..+|...+.....-.....++       .+      -.
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V-------~~------l~  211 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV-------RD------VA  211 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE-------EE------EE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE-------EE------EE
Confidence            1111   112210          0245688999999999999999854443321100000000       00      00


Q ss_pred             cccccccccccccEEEEEeeeeEEEEEeCCCCceEEE
Q 007199          190 VESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       190 ~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                      ..|...    ....++.|..|+.|+.+|..++...|.
T Consensus       212 ~sp~~~----~~~~l~s~s~Dg~I~iwd~~~~~~~~~  244 (753)
T 3jro_A          212 WSPTVL----LRSYLASVSQDRTCIIWTQDNEQGPWK  244 (753)
T ss_dssp             ECCCCS----SSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred             eccCCC----CCCEEEEEecCCEEEEecCCCCCCcce
Confidence            111100    034788899999999999888765443

>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*

Probab=95.55  E-value=0.075  Score=58.31  Aligned_cols=102  Identities=23%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCC--------eEEEEecCCCceeeecccHHHH---hh
Q 007199           59 TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDW--------ELYFHSKRFGKMKKLSSSAEEY---IR  127 (613)
Q Consensus        59 ~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG--------~lY~~~~~~G~l~~~~~~~~~~---v~  127 (613)
                      ..+++|. +|+++|....+ +++.......+...--.+..+..||        .+|.+|.. |++ .|.+..+.-   .+
T Consensus       176 ~~~i~D~-~G~lrW~~~~~-~~~~~~~~~~~~~g~l~~~~g~~nG~l~~g~G~~i~elD~~-Gkv-v~~~~lp~g~~~~H  251 (571)
T 3elq_A          176 FTFIVDT-EGEYRWWLDQD-TFYDGRDRDINKRGYLMGIRETPRGTFTAVQGQHWYEFDMM-GQV-LEDHKLPRGFADAT  251 (571)
T ss_dssp             EEEEECT-TSCEEEECCGG-GTCCSSSCCGGGCSCCEEEEECTTSCEEEEEBTEEEEECTT-CCE-EEEEECCTTEECBC
T ss_pred             ceEEEcC-CCcEEEEeCcc-cccccceeeccCCCeEEEEEecCCCCEEEecCcEEEEECCC-CcE-EEEEECCCCccccc
Confidence            3699985 69999998653 3433211000000000111112222        47888775 788 777766531   12


Q ss_pred             hCceeecCCcEEE-Ee--------------ecceEEEEECCCCcEEEEEecCC
Q 007199          128 RMPYISKDGGVTL-GA--------------MKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       128 ~sP~~~~dg~v~~-Gs--------------~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      ..-.+..+|.+.+ ..              -++.++-|| .||+++|.++..+
T Consensus       252 HD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~d  303 (571)
T 3elq_A          252 HESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLTK  303 (571)
T ss_dssp             SCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHHH
T ss_pred             cceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhHH
Confidence            2333445676554 21              256899999 9999999999643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=95.53  E-value=0.075  Score=54.95  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=75.9

Q ss_pred             CCCCEEEEEec------CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecC---------CCCeEEEEec
Q 007199           46 PEPDVALVAAL------DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVD---------EDWELYFHSK  110 (613)
Q Consensus        46 ~~~~~v~v~t~------dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~---------~DG~lY~~~~  110 (613)
                      .....+||.+.      ||+||.+|..||+++=++..+..-  .  ..+..+...+|+...         .|+.+..+|.
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~--i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--H--VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--E--EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--c--eEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            35578998863      789999999999999888765311  1  123344446777652         4778999999


Q ss_pred             CCCce-eeecccHHHH-hhhCc---eeecCC-cEEEEee--cceEEEEECCCCcEEEE-EecC
Q 007199          111 RFGKM-KKLSSSAEEY-IRRMP---YISKDG-GVTLGAM--KTSVFLVDVKSGRVVDN-YVLD  164 (613)
Q Consensus       111 ~~G~l-~~~~~~~~~~-v~~sP---~~~~dg-~v~~Gs~--~~~~~~vD~~tG~~~~~-~~~~  164 (613)
                      .+++. +.++..-... ....|   .++.|| .+|++..  ++++..+|..+|+++.. ...+
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~  151 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA  151 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC
Confidence            88876 2233211000 00122   355566 5888875  57899999999999887 6543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=95.51  E-value=0.032  Score=58.92  Aligned_cols=104  Identities=15%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCC---eeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           47 EPDVALVAALDGTIHLVDTKLG---KIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG---~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      ...++++++.||.|+..|.+++   +..+++.. ..++.+-   ....+...+++.++.||.++.+|.++++.....+..
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i---~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~  319 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL---SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES  319 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE---EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE---EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence            4567888999999999999988   68888864 3344432   122222346777888999999999874321222221


Q ss_pred             -HHHhhhCceeecCC--cEEEEeecceEEEEECCC
Q 007199          123 -EEYIRRMPYISKDG--GVTLGAMKTSVFLVDVKS  154 (613)
Q Consensus       123 -~~~v~~sP~~~~dg--~v~~Gs~~~~~~~vD~~t  154 (613)
                       ...| .+-.++.++  .+.+|+.++++...|..+
T Consensus       320 h~~~v-~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          320 HKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CSSCE-EEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCCCE-EEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence             1112 122334355  366799999999999887

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.51  E-value=0.1  Score=53.98  Aligned_cols=143  Identities=8%  Similarity=-0.026  Sum_probs=82.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc-eeeccccccCCCCC-----------eEEEecCCCCeEEEEecCCCce
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRP-IYSSYQASFNSNAS-----------EFYLDVDEDWELYFHSKRFGKM  115 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~-i~s~~~~~~~~~~~-----------~~~i~~~~DG~lY~~~~~~G~l  115 (613)
                      +..+.-|+.|++|..-|.+||+.+.+++.+.. +.+-....+..+..           ....-++.|+.+-.+|..+|+.
T Consensus       193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred             CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence            35666679999999999999999999975432 11110000001110           1124467899999999999876


Q ss_pred             ee-ecccH--HH---HhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCC-CCCCCCcCCCCCccccCCCccc
Q 007199          116 KK-LSSSA--EE---YIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFS-ASTPGFQSDENKHVVPVDGYEE  188 (613)
Q Consensus       116 ~~-~~~~~--~~---~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  188 (613)
                      .. ..++.  +.   ++  +...+ +-.+..|+.|+++..-|..||+.+.++..... ..+          .+       
T Consensus       273 l~v~~~~~p~Gh~~~~l--sg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs----------~v-------  332 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFL--EGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS----------FV-------  332 (356)
T ss_dssp             EEEEEECCCTTCCCCEE--EEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC----------EE-------
T ss_pred             EEEEEeeccCCCcceeE--ccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE----------EE-------
Confidence            22 11111  10   00  11111 22345688999999999999999999853211 100          00       


Q ss_pred             ccccccccccccccEEEEEeeeeEEEEEe
Q 007199          189 LVESGVGNLKRIRQLVYIMRTDYVLQSTS  217 (613)
Q Consensus       189 ~~~~~~~~~~~~~~~v~igr~d~~l~a~d  217 (613)
                      .++|.       ...|+-|..|++|+.+|
T Consensus       333 afSPD-------G~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          333 KWSGT-------DSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EECSS-------SSEEEEECTTSCEEEEE
T ss_pred             EECCC-------CCEEEEEECCCcEEEec
Confidence            12221       23788899999999876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.44  E-value=0.091  Score=59.36  Aligned_cols=154  Identities=11%  Similarity=0.048  Sum_probs=88.0

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCC---eeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           46 PEPDVALVAALDGTIHLVDTKLG---KIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG---~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      +.+..+++++. |.|+.+|..+|   +..--...+..+...   ....|+. .++..+ |+.||.+|..+|+..++...-
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~---~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDA---KLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEE---EECTTSS-EEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccc---cCCCCCC-EEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            35566666664 99999999998   544322222333332   1222222 222333 679999999988775543322


Q ss_pred             HHH--------h-------hhCceeecCCc-EEEEeecc---------------------------------eEEEEECC
Q 007199          123 EEY--------I-------RRMPYISKDGG-VTLGAMKT---------------------------------SVFLVDVK  153 (613)
Q Consensus       123 ~~~--------v-------~~sP~~~~dg~-v~~Gs~~~---------------------------------~~~~vD~~  153 (613)
                      ...        |       ..++..+-||. +++++.++                                 +++.+|..
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            111        1       25677887885 67777665                                 88899999


Q ss_pred             C-CcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEee-----eeEEEEEeCCCCceEEEE
Q 007199          154 S-GRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRT-----DYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       154 t-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~-----d~~l~a~d~~~G~~~Wn~  227 (613)
                      + |+..........          ..         .......  +  ....|+++..     +..|+.+|..+|+....+
T Consensus       272 ~~~~~~~~~~~~~~----------~~---------~~~~~~~--p--Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQ----------DI---------YLARVNW--R--DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             TTCCCEEECCCSCS----------SE---------EEEEEEE--E--ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             CCCceEEecCCCCc----------ce---------EEEEEEe--C--CCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence            8 887654321000          00         0011111  1  0235666554     788999999999866544


Q ss_pred             E
Q 007199          228 A  228 (613)
Q Consensus       228 t  228 (613)
                      .
T Consensus       329 ~  329 (741)
T 2ecf_A          329 H  329 (741)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.43  E-value=0.049  Score=55.37  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             CEEEEEecCCcEEEEeCCCCeee-EEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH--
Q 007199           49 DVALVAALDGTIHLVDTKLGKIR-WSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY--  125 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~-W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~--  125 (613)
                      .++++++.+|.|+.+|..+|+.. |.+  +..+.+-   ....+ ..+++..  +..||.+|..+|+++.+.-.-...  
T Consensus        62 ~l~~~d~~~~~i~~~d~~~~~~~~~~~--~~~v~~i---~~~~d-g~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~  133 (326)
T 2ghs_A           62 TAWWFNILERELHELHLASGRKTVHAL--PFMGSAL---AKISD-SKQLIAS--DDGLFLRDTATGVLTLHAELESDLPG  133 (326)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEC--SSCEEEE---EEEET-TEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTT
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEC--CCcceEE---EEeCC-CeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCC
Confidence            34555556789999999998764 433  3333222   11112 2355544  345999999999885442111100  


Q ss_pred             -hhhCceeecCCcEEEEeec-------ceEEEEECCCCcEEEE
Q 007199          126 -IRRMPYISKDGGVTLGAMK-------TSVFLVDVKSGRVVDN  160 (613)
Q Consensus       126 -v~~sP~~~~dg~v~~Gs~~-------~~~~~vD~~tG~~~~~  160 (613)
                       --...+++.||.+|+|+..       +.+|.+|  +|++...
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~  174 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL  174 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence             0123446668999998863       6899999  6876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.42  E-value=0.12  Score=57.25  Aligned_cols=145  Identities=12%  Similarity=0.131  Sum_probs=96.0

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH------
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA------  122 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~------  122 (613)
                      .++.|+.||+|+..|..+++.+-++... .+|.+-   ....+ ..+++-++.||.+..+|..+|+. .-.+..      
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v---~fspd-g~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~  236 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV---RYNPD-GSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNV  236 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSC
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEE---EECCC-CCEEEEEECCCcEEEEECCCCcE-eeeecccccccc
Confidence            6889999999999999999988887642 344432   11222 24677778899999999988876 323311      


Q ss_pred             --HHHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccc
Q 007199          123 --EEYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKR  199 (613)
Q Consensus       123 --~~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (613)
                        .+.|. +-.++.||. +.+|+.|+++..-|..+|+.+.++..+....      . ....+                .+
T Consensus       237 ~h~~~V~-~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~------~-~~~~~----------------~~  292 (611)
T 1nr0_A          237 AHSGSVF-GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE------D-QQLGI----------------IW  292 (611)
T ss_dssp             SSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG------G-CEEEE----------------EE
T ss_pred             ccCCCEE-EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc------c-eeEEE----------------EE
Confidence              11111 122444664 6679999999999999999998886542211      0 00000                01


Q ss_pred             cccEEEEEeeeeEEEEEeCCCCce
Q 007199          200 IRQLVYIMRTDYVLQSTSQDSGEV  223 (613)
Q Consensus       200 ~~~~v~igr~d~~l~a~d~~~G~~  223 (613)
                      ....++.+..|+.++.+|..+|..
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~  316 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSI  316 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEE
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCc
Confidence            134677888899999999887753

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=95.39  E-value=0.21  Score=54.27  Aligned_cols=100  Identities=17%  Similarity=0.158  Sum_probs=60.7

Q ss_pred             EEEEeCCCCeeeEEeeCCCceeec--c--------------ccccCCCCCeEEEecC--CCCeEEEEecCCCce-eeecc
Q 007199           60 IHLVDTKLGKIRWSFGTGRPIYSS--Y--------------QASFNSNASEFYLDVD--EDWELYFHSKRFGKM-KKLSS  120 (613)
Q Consensus        60 l~ald~~tG~~~W~~~~~~~i~s~--~--------------~~~~~~~~~~~~i~~~--~DG~lY~~~~~~G~l-~~~~~  120 (613)
                      |+.+|-.||+++|++...++--..  +              .+.++.+.-.+++.-+  .-+.|.++|..+|++ ++|.|
T Consensus       231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~  310 (591)
T 2zux_A          231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL  310 (591)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence            899999999999998764332100  0              0112222212222211  123599999988887 68988


Q ss_pred             cHHHH-----h---hhCceee---cCC--cEEEEeecceEEEEECCCCcEEEEEecCC
Q 007199          121 SAEEY-----I---RRMPYIS---KDG--GVTLGAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       121 ~~~~~-----v---~~sP~~~---~dg--~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      .....     .   ..+|.+.   .||  .|++|+.     +|| .+|+.+|....+.
T Consensus       311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gH  362 (591)
T 2zux_A          311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGH  362 (591)
T ss_dssp             ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCC
T ss_pred             cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCC
Confidence            77531     1   1356654   234  4777775     678 6799999987543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.38  E-value=0.17  Score=50.96  Aligned_cols=101  Identities=11%  Similarity=-0.005  Sum_probs=58.5

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCC---CceeeecccHHHHhhhCceeec
Q 007199           58 GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF---GKMKKLSSSAEEYIRRMPYISK  134 (613)
Q Consensus        58 G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~---G~l~~~~~~~~~~v~~sP~~~~  134 (613)
                      |.||.+|..+|+..-....   +..+.-...+.+...+|+..+.++.|+.++..+   |..+.+. ..+.  -..-++..
T Consensus       165 g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g--P~gi~~d~  238 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN--PGNIKRNA  238 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS--EEEEEECT
T ss_pred             ceEEEEeCCCCEEEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC--CCCeEECC
Confidence            6777777777765432210   111100112333335777777788999998764   2331211 1111  11124666


Q ss_pred             CCcEEEEeec-----------ceEEEEECCCCcEEEEEecCC
Q 007199          135 DGGVTLGAMK-----------TSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       135 dg~v~~Gs~~-----------~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      ||.+|++...           +.++.+|+. |+++..+....
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~  279 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP  279 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCC
Confidence            8999998764           679999985 99998887543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.35  E-value=0.08  Score=55.27  Aligned_cols=106  Identities=15%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             CEEEEEecCCcEEEEeCCCCee----eEEeeCCC-------------ceeeccccccCCCCCeEEEecCCCCeEEEEecC
Q 007199           49 DVALVAALDGTIHLVDTKLGKI----RWSFGTGR-------------PIYSSYQASFNSNASEFYLDVDEDWELYFHSKR  111 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~----~W~~~~~~-------------~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~  111 (613)
                      .++++|+.||+|+..|..+|+.    ...+....             +|.+-   ....+ ..+++.++. |.++.+|..
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~-g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV---KFSHS-GRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE---EECTT-SSEEEEEES-SEEEEEETT
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEE---EECCC-CCEEEEeeC-CeEEEEeCC
Confidence            7899999999999999999997    67776543             44432   11122 245666665 999999998


Q ss_pred             C-CceeeecccHHHHhhh---------------CceeecCCc-EEEEeecceEEEEECCCCcEEEE
Q 007199          112 F-GKMKKLSSSAEEYIRR---------------MPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDN  160 (613)
Q Consensus       112 ~-G~l~~~~~~~~~~v~~---------------sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~  160 (613)
                      + ++. ...+.....+..               +.+++.||. +++|+.|++++..|..+|+.+.-
T Consensus       315 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          315 MENRP-VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL  379 (447)
T ss_dssp             CCSSC-SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred             CCccc-cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence            6 655 334443333222               134555664 77899999999999999998843

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.30  E-value=0.0087  Score=61.40  Aligned_cols=147  Identities=9%  Similarity=0.007  Sum_probs=78.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCC--eeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCc---eeeecc
Q 007199           47 EPDVALVAALDGTIHLVDTKLG--KIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGK---MKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG--~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~---l~~~~~  120 (613)
                      .+..+++|+.||.|+..|..++  +..-++.. ..+|..-   ....+ ..+++.++.||.++.+|..++.   ......
T Consensus        22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~---~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~   97 (377)
T 3dwl_C           22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCV---DWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL   97 (377)
T ss_dssp             SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEE---EECTT-TCCEEEEETTSSEEEC------CCCCEEECC
T ss_pred             CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEE---EEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEec
Confidence            5678888889999999999988  66666653 2344432   11222 2456667779999999998877   211111


Q ss_pred             cHHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcE---EEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          121 SAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRV---VDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       121 ~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .-...|. +..++.|| .+++|+.+++++..|..+++.   ...+.....   .+.       .+      -.+.|    
T Consensus        98 ~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~---~~v-------~~------~~~~~----  156 (377)
T 3dwl_C           98 RLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR---STI-------LS------LDWHP----  156 (377)
T ss_dssp             CCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC---SCE-------EE------EEECT----
T ss_pred             ccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC---CCe-------EE------EEEcC----
Confidence            1111221 12233344 577899999999999999873   444432110   000       00      00111    


Q ss_pred             ccccccEEEEEeeeeEEEEEeCCCC
Q 007199          197 LKRIRQLVYIMRTDYVLQSTSQDSG  221 (613)
Q Consensus       197 ~~~~~~~v~igr~d~~l~a~d~~~G  221 (613)
                         ....++.|..|+.|+.+|..++
T Consensus       157 ---~~~~l~~~~~d~~i~iwd~~~~  178 (377)
T 3dwl_C          157 ---NNVLLAAGCADRKAYVLSAYVR  178 (377)
T ss_dssp             ---TSSEEEEEESSSCEEEEEECCS
T ss_pred             ---CCCEEEEEeCCCEEEEEEEEec
Confidence               1347888999999988886543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=95.29  E-value=0.097  Score=52.93  Aligned_cols=74  Identities=15%  Similarity=0.106  Sum_probs=52.9

Q ss_pred             eeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCC-C-cceeEEEEEE-eCCEEEEEecCCCc-c
Q 007199          478 NKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQH-P-NIVRWYGVES-DQDFVYLSLERCTC-S  552 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~H-p-nIV~l~g~~~-~~~~~~LV~E~~~G-s  552 (613)
                      .+.++.|....||+.    |..++||+-+.. ....+.+|.++|..+-.| + .+.+++.++. ..+..++|||+++| .
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~   99 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQI   99 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEE
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeE
Confidence            345788999999985    567888875432 345788999999887333 2 3667777775 34567899999998 6


Q ss_pred             HHH
Q 007199          553 LND  555 (613)
Q Consensus       553 L~~  555 (613)
                      |.+
T Consensus       100 l~~  102 (306)
T 3tdw_A          100 LGE  102 (306)
T ss_dssp             CHH
T ss_pred             Cch
Confidence            654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.26  E-value=0.15  Score=50.70  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             CCCCeEEEecCCCCeEEEEec--CCCcee--ee--cccHHHHhhhCceeecCCcEEEEeec-ceEEEEECCCCcEEEEEe
Q 007199           90 SNASEFYLDVDEDWELYFHSK--RFGKMK--KL--SSSAEEYIRRMPYISKDGGVTLGAMK-TSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus        90 ~~~~~~~i~~~~DG~lY~~~~--~~G~l~--~~--~~~~~~~v~~sP~~~~dg~v~~Gs~~-~~~~~vD~~tG~~~~~~~  162 (613)
                      .+...+|+..+.++.|+.++.  .+|.+.  +.  .+....-.-..-+++.||.+|++... +.++.+|++||+++..+.
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence            344467787777899998875  677652  11  11111001112346678999998864 569999999999998886


Q ss_pred             cC
Q 007199          163 LD  164 (613)
Q Consensus       163 ~~  164 (613)
                      ..
T Consensus       238 ~p  239 (297)
T 3g4e_A          238 LP  239 (297)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=95.15  E-value=0.032  Score=56.22  Aligned_cols=73  Identities=10%  Similarity=0.034  Sum_probs=49.9

Q ss_pred             eeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCc--ceeEEEEEEeCC---EEEEEecCCCc-
Q 007199          479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPN--IVRWYGVESDQD---FVYLSLERCTC-  551 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~Hpn--IV~l~g~~~~~~---~~~LV~E~~~G-  551 (613)
                      +.++.|.+..||+..    ..+++|+-... ....+.+|.++|..+..+..  +.+++......+   ..|+|||+++| 
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~  101 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGV  101 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCE
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCe
Confidence            458999999999742    46888886643 34578899998877644433  445555544333   35889999998 


Q ss_pred             cHHH
Q 007199          552 SLND  555 (613)
Q Consensus       552 sL~~  555 (613)
                      +|.+
T Consensus       102 ~l~~  105 (304)
T 3sg8_A          102 PLTP  105 (304)
T ss_dssp             ECCH
T ss_pred             ECCc
Confidence            6643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.09  E-value=0.16  Score=50.76  Aligned_cols=104  Identities=9%  Similarity=0.005  Sum_probs=57.9

Q ss_pred             EEEEEecCCcEEEEeCCCCe-eeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhh-
Q 007199           50 VALVAALDGTIHLVDTKLGK-IRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIR-  127 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~-~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~-  127 (613)
                      ++++++.+|.|+.+|. +|+ ..|....+. ..+-   ..+.+. .+|+....++.|+.++.. |+...+.-.....-. 
T Consensus        59 l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~-~~gl---~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~  131 (305)
T 3dr2_A           59 LVWSDLVGRRVLGWRE-DGTVDVLLDATAF-TNGN---AVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLN  131 (305)
T ss_dssp             EEEEETTTTEEEEEET-TSCEEEEEESCSC-EEEE---EECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECS
T ss_pred             EEEEECCCCEEEEEeC-CCCEEEEeCCCCc-ccee---eECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccC
Confidence            4445555667777776 343 233322111 1111   112222 466666656889988876 776444322111111 


Q ss_pred             --hCceeecCCcEEE-----Eee-------------cceEEEEECCCCcEEEE
Q 007199          128 --RMPYISKDGGVTL-----GAM-------------KTSVFLVDVKSGRVVDN  160 (613)
Q Consensus       128 --~sP~~~~dg~v~~-----Gs~-------------~~~~~~vD~~tG~~~~~  160 (613)
                        ...++..||.+|+     |+.             .+.+|.+|+++|++...
T Consensus       132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence              1345667999999     653             36899999999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.04  E-value=0.072  Score=54.66  Aligned_cols=142  Identities=7%  Similarity=-0.023  Sum_probs=85.9

Q ss_pred             CCEEEEEecCCcEEEEeCCCC-eeeEEeeCCCceeeccccccCCCCCeEEEe-cCCCCeEEEEecCCCc-----------
Q 007199           48 PDVALVAALDGTIHLVDTKLG-KIRWSFGTGRPIYSSYQASFNSNASEFYLD-VDEDWELYFHSKRFGK-----------  114 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG-~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~-~~~DG~lY~~~~~~G~-----------  114 (613)
                      .+.++++ .|++|+..|..++ +.+.++.+  +....   ....  ..+.+. ++.||.++.+|..+++           
T Consensus       110 ~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~---~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          110 REFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVC---EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             SSEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEE---EEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred             CCEEEEE-EcCEEEEEECCCCceeeEEecc--CCceE---EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            3444444 5899999999998 88887766  21111   0111  134444 6789999999998876           


Q ss_pred             ------eeeecccHHHHhhhCceeecCCc-EEEEeecce-EEEEECCCCcEEEEEecC-CCCCCCCCcCCCCCccccCCC
Q 007199          115 ------MKKLSSSAEEYIRRMPYISKDGG-VTLGAMKTS-VFLVDVKSGRVVDNYVLD-FSASTPGFQSDENKHVVPVDG  185 (613)
Q Consensus       115 ------l~~~~~~~~~~v~~sP~~~~dg~-v~~Gs~~~~-~~~vD~~tG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  185 (613)
                            ++.+.-- ...| .+-.++.||. +.+|+.|++ +..-|..+|+.+.++..+ ..   .++.      .+    
T Consensus       182 ~~~~p~~~~~~~h-~~~v-~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~------~~----  246 (355)
T 3vu4_A          182 KAILGKGVLIKAH-TNPI-KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR---ADVV------DM----  246 (355)
T ss_dssp             -----CCEEECCC-SSCE-EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC---SCEE------EE----
T ss_pred             cccCcccEEEEcc-CCce-EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC---CcEE------EE----
Confidence                  2111110 1111 1223455665 567999998 999999999999999732 11   0000      00    


Q ss_pred             cccccccccccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          186 YEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                         .++|       ....+..|..|++|+.+|..++.
T Consensus       247 ---~~s~-------~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          247 ---KWST-------DGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             ---EECT-------TSCEEEEEETTCEEEEEESSCCS
T ss_pred             ---EECC-------CCCEEEEEECCCEEEEEEccCCC
Confidence               1111       13478889999999999987653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.02  E-value=0.29  Score=53.00  Aligned_cols=149  Identities=12%  Similarity=0.136  Sum_probs=92.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-H
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-E  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-~  124 (613)
                      ....+++|+.||.|+..| .+|+.+.++... .+|.+-   ....+. .+++.++.||.++.+|.. |++ ...+... .
T Consensus       355 ~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~---~~s~dg-~~l~~~~~d~~v~~~~~~-~~~-~~~~~~~~~  427 (577)
T 2ymu_A          355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV---AFSPDG-QTIASASDDKTVKLWNRN-GQL-LQTLTGHSS  427 (577)
T ss_dssp             TSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEE---EECTTS-SCEEEEETTSEEEEECTT-CCE-EEEEECCSS
T ss_pred             CCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEE---EECCCC-CEEEEEeCCCEEEEEeCC-CCE-EEEecCCCC
Confidence            567888999999999999 578888888642 344332   112222 355566779999999864 554 2222211 1


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .|. +-.++.|+ .+.+|+.|+++..-|. +|+.+..+.......           .+      -.++|       ....
T Consensus       428 ~v~-~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v-----------~~------~~~sp-------d~~~  481 (577)
T 2ymu_A          428 SVW-GVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV-----------RG------VAFSP-------DGQT  481 (577)
T ss_dssp             CEE-EEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCE-----------EE------EEECT-------TSCE
T ss_pred             CeE-EEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCE-----------EE------EEEcC-------CCCE
Confidence            111 12234455 5667999999999995 688887775322110           00      01111       1337


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      |..+..|+.|+.+|. +|+....+.-
T Consensus       482 las~~~d~~i~iw~~-~~~~~~~~~~  506 (577)
T 2ymu_A          482 IASASDDKTVKLWNR-NGQLLQTLTG  506 (577)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             EEEEeCCCEEEEEcC-CCCEEEEEeC
Confidence            788999999999995 6888776653

>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}

Probab=94.95  E-value=0.4  Score=52.41  Aligned_cols=142  Identities=18%  Similarity=0.241  Sum_probs=80.6

Q ss_pred             EEEEeCCCCeeeEEeeCCCc---ee------ec-------cccccCCCCCeEEEecC--CCCeEEEEecCCCce-eeecc
Q 007199           60 IHLVDTKLGKIRWSFGTGRP---IY------SS-------YQASFNSNASEFYLDVD--EDWELYFHSKRFGKM-KKLSS  120 (613)
Q Consensus        60 l~ald~~tG~~~W~~~~~~~---i~------s~-------~~~~~~~~~~~~~i~~~--~DG~lY~~~~~~G~l-~~~~~  120 (613)
                      |+.+|-.||+.+|++...++   +.      .-       -.+.++.+.-.+++..+  .-..|.++|...|++ ++|.|
T Consensus       235 L~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~  314 (620)
T 2zuy_A          235 LTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVF  314 (620)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEe
Confidence            59999999999999876332   21      00       00122323223333332  235688999888875 68999


Q ss_pred             cHHHH-----hh---hCceee---cCC--cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcc
Q 007199          121 SAEEY-----IR---RMPYIS---KDG--GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYE  187 (613)
Q Consensus       121 ~~~~~-----v~---~sP~~~---~dg--~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (613)
                      .....     ..   .++.+.   .||  .|++|+     .+|| .+|+++|....+..-   .+.       +.     
T Consensus       315 ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD-~dG~~L~st~~gHGD---a~h-------v~-----  373 (620)
T 2zuy_A          315 DSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA-----MAVD-HDGTGLYSTGLGHGD---AMH-------VG-----  373 (620)
T ss_dssp             ETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT-----EEEC-TTSSEEEECSCCCCS---CEE-------EE-----
T ss_pred             cCCCCcccccccccCcCceEEecCCCCceeEEEee-----eEEC-CCCCEEeecCCCCCc---eeE-------EE-----
Confidence            77431     11   345553   234  477777     3788 789999998753321   010       00     


Q ss_pred             cccccccccccccccEEEEEee-----eeEEEEEeCCCCceEEEEEe
Q 007199          188 ELVESGVGNLKRIRQLVYIMRT-----DYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~igr~-----d~~l~a~d~~~G~~~Wn~t~  229 (613)
                       -++|.     . .+..+++-.     .+-....|+++|+++|....
T Consensus       374 -d~dP~-----r-pGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~  413 (620)
T 2zuy_A          374 -DLDPS-----R-KGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHA  413 (620)
T ss_dssp             -CSCTT-----S-SSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred             -ecCCC-----C-CCCEEEEEecCCCCCCceEEEECCCCcEEEEecC
Confidence             11221     1 122333322     34566789999999998855

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.88  E-value=0.24  Score=49.29  Aligned_cols=104  Identities=9%  Similarity=0.061  Sum_probs=60.2

Q ss_pred             CCEEEE-EecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALV-AALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v-~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ++.+|+ ...+++||.+|..+|+.. .+..+..+.+-   ....+. .+++. . +..||.+|..+|+++.+.-.-...-
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i---~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~   96 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSV---ALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKK   96 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEE---EEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCS
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEE---EECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCC
Confidence            344444 455789999999988763 23333333222   112222 35544 4 6789999999888744432111100


Q ss_pred             hh---CceeecCCcEEEEee------------cceEEEEECCCCcEEE
Q 007199          127 RR---MPYISKDGGVTLGAM------------KTSVFLVDVKSGRVVD  159 (613)
Q Consensus       127 ~~---sP~~~~dg~v~~Gs~------------~~~~~~vD~~tG~~~~  159 (613)
                      ..   .-+++.||.+|+|+.            .+.+|.+|+. |++..
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~  143 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK  143 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE
Confidence            11   123566899999974            3579999975 66544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=94.87  E-value=0.28  Score=49.34  Aligned_cols=104  Identities=11%  Similarity=0.058  Sum_probs=58.6

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEee--CCCceeeccccccCC-CCCeEEEecC-----------------CCCeEEE
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFG--TGRPIYSSYQASFNS-NASEFYLDVD-----------------EDWELYF  107 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~--~~~~i~s~~~~~~~~-~~~~~~i~~~-----------------~DG~lY~  107 (613)
                      ++.+||++..+.|+.+|..+|+...-..  .+.++..+.....+. + ..+|+...                 .+|.||.
T Consensus        91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC-CEEEEECCcccccccccceehcccCCCceEEE
Confidence            6889999888889999988776543221  111221111111222 2 24666543                 2488999


Q ss_pred             EecCCCceeeecccHHHHhhhCceeecCCc-EEEE-eecceEEEEECCC
Q 007199          108 HSKRFGKMKKLSSSAEEYIRRMPYISKDGG-VTLG-AMKTSVFLVDVKS  154 (613)
Q Consensus       108 ~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~-v~~G-s~~~~~~~vD~~t  154 (613)
                      +|+.+|+...+.-...  ....-+++.||. +|+. +....++.+|..+
T Consensus       170 ~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          170 YDPSTKETTLLLKELH--VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EETTTTEEEEEEEEES--CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EeCCCCEEEEeccCCc--cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            9998887643321110  001124555664 7876 4457788888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.84  E-value=0.28  Score=48.85  Aligned_cols=153  Identities=10%  Similarity=0.103  Sum_probs=81.4

Q ss_pred             CCEEEEEecC-CcEEEEeCCCCeeeEEeeC--CCceeeccccccCCCCCeEEEe----cC-------------CCCeEEE
Q 007199           48 PDVALVAALD-GTIHLVDTKLGKIRWSFGT--GRPIYSSYQASFNSNASEFYLD----VD-------------EDWELYF  107 (613)
Q Consensus        48 ~~~v~v~t~d-G~l~ald~~tG~~~W~~~~--~~~i~s~~~~~~~~~~~~~~i~----~~-------------~DG~lY~  107 (613)
                      ++.+|+++.. +.|+.+|.. |+...-...  +.+..+......+.+. .+|+.    +.             ..+.||.
T Consensus        96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~  173 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYR  173 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEE
Confidence            4556666654 678888875 765443221  1111111111112222 45652    11             1478999


Q ss_pred             EecCCCceeeecccHHHHhhhCceeecCCc-EEEEeec------ceEEEEECCCCcEEE--EEecCCCCCCCCCcCCCCC
Q 007199          108 HSKRFGKMKKLSSSAEEYIRRMPYISKDGG-VTLGAMK------TSVFLVDVKSGRVVD--NYVLDFSASTPGFQSDENK  178 (613)
Q Consensus       108 ~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~-v~~Gs~~------~~~~~vD~~tG~~~~--~~~~~~~~~~~~~~~~~~~  178 (613)
                      +|+.+|++..+. ...  .....+++.||. +|+....      ..++.+|..++.+.-  .+....  ...|   +  +
T Consensus       174 ~d~~~g~~~~~~-~~~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~--~~~p---d--g  243 (305)
T 3dr2_A          174 LPPDGSPLQRMA-DLD--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP--DGLP---D--G  243 (305)
T ss_dssp             ECSSSCCCEEEE-EES--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS--SSCC---C--S
T ss_pred             EcCCCCcEEEEe-cCC--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC--CCCC---C--e
Confidence            999888885543 211  112346777875 8887654      578888877655211  111100  0000   0  0


Q ss_pred             ccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          179 HVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                       .        .++        .++.||++..++ |+.+|+ +|+..-.+...+
T Consensus       244 -i--------~~d--------~~G~lwv~~~~g-v~~~~~-~g~~~~~~~~~~  277 (305)
T 3dr2_A          244 -F--------CVD--------RGGWLWSSSGTG-VCVFDS-DGQLLGHIPTPG  277 (305)
T ss_dssp             -E--------EEC--------TTSCEEECCSSE-EEEECT-TSCEEEEEECSS
T ss_pred             -E--------EEC--------CCCCEEEecCCc-EEEECC-CCCEEEEEECCC
Confidence             0        111        245799998665 999998 588877776554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=94.82  E-value=0.57  Score=47.70  Aligned_cols=105  Identities=13%  Similarity=0.058  Sum_probs=65.0

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCc-eeecc--ccccCCCCCeEEEecCCCC--eEEEEecCCCceeeecccHHHHhhhCcee
Q 007199           58 GTIHLVDTKLGKIRWSFGTGRP-IYSSY--QASFNSNASEFYLDVDEDW--ELYFHSKRFGKMKKLSSSAEEYIRRMPYI  132 (613)
Q Consensus        58 G~l~ald~~tG~~~W~~~~~~~-i~s~~--~~~~~~~~~~~~i~~~~DG--~lY~~~~~~G~l~~~~~~~~~~v~~sP~~  132 (613)
                      -.++ +|..+|...-++...+. ....+  +.....|...+++....||  +||.+|..+|+.+.+.. .......+|++
T Consensus        11 ~~~~-~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~   88 (388)
T 3pe7_A           11 FDTY-QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFL   88 (388)
T ss_dssp             CEEE-ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEE
T ss_pred             ceEE-ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEE
Confidence            3444 57788888777744332 11111  1122333334444444477  59999999888744432 22222235778


Q ss_pred             ecCC-cEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          133 SKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       133 ~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      +-|| .|++++.+..+|.+|+.||+....+...
T Consensus        89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~  121 (388)
T 3pe7_A           89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVP  121 (388)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence            8788 4778888889999999999988766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.77  E-value=0.27  Score=49.74  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             CCEEEEEec-------CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecC--CC-cee-
Q 007199           48 PDVALVAAL-------DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKR--FG-KMK-  116 (613)
Q Consensus        48 ~~~v~v~t~-------dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~--~G-~l~-  116 (613)
                      ++.+|+++.       .|.||.+|  +|+...... +......  .....+...+|+..+.++.||.++..  +| .+. 
T Consensus       144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~--i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~  218 (326)
T 2ghs_A          144 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNS--ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  218 (326)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEE--EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCC--eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence            455777775       36888888  576553221 1011111  11233334577777778999999975  67 431 


Q ss_pred             --ee-cccHHHHhhhCceeecCCcEEEEeec-ceEEEEECCCCcEEEEEecC
Q 007199          117 --KL-SSSAEEYIRRMPYISKDGGVTLGAMK-TSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       117 --~~-~~~~~~~v~~sP~~~~dg~v~~Gs~~-~~~~~vD~~tG~~~~~~~~~  164 (613)
                        .+ .+......-..-+++.||.+|++... +.++.+|+ +|+++..+...
T Consensus       219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence              11 11111011122346668999999864 78999999 78888777543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=94.75  E-value=0.096  Score=57.48  Aligned_cols=142  Identities=13%  Similarity=0.116  Sum_probs=79.0

Q ss_pred             CEEEEEec---CC--cEEEEeC--CCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeeccc
Q 007199           49 DVALVAAL---DG--TIHLVDT--KLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        49 ~~v~v~t~---dG--~l~ald~--~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~  121 (613)
                      .++|.++.   +.  .||.+|.  ..+..  .+......... .. .+++...+|+... ++.++.+|..+|+.+++.-.
T Consensus        76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~~~~~-~~-s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~  150 (582)
T 3o4h_A           76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKPMRIL-SG-VDTGEAVVFTGAT-EDRVALYALDGGGLRELARL  150 (582)
T ss_dssp             EEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCSBEEE-EE-EECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEE
T ss_pred             eEEEEeccCCCCcceEEEEEeccCCCccc--cccCCCCceee-ee-CCCCCeEEEEecC-CCCceEEEccCCcEEEeecC
Confidence            46666654   23  6777877  44443  33333222211 11 1121123444444 55566778888887444322


Q ss_pred             HHHHhhhCceeecCCcEEE-Eeec----ceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          122 AEEYIRRMPYISKDGGVTL-GAMK----TSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~v~~-Gs~~----~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      -.    .++.++-||...+ ++.+    .++|.+|+.||+... ..........|                 ..+|.   
T Consensus       151 ~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~~~~~~~-----------------~~SpD---  205 (582)
T 3o4h_A          151 PG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGEGSFSSA-----------------SISPG---  205 (582)
T ss_dssp             SS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSSCEEEEE-----------------EECTT---
T ss_pred             CC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCCCccccc-----------------eECCC---
Confidence            21    6788888886554 6666    789999999999873 32111110011                 11111   


Q ss_pred             ccccccEEEEEeeee--EEEEEeCCCCceE
Q 007199          197 LKRIRQLVYIMRTDY--VLQSTSQDSGEVL  224 (613)
Q Consensus       197 ~~~~~~~v~igr~d~--~l~a~d~~~G~~~  224 (613)
                          ...|+....|+  +|+.+|.++|+..
T Consensus       206 ----G~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          206 ----MKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             ----SCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ----CCEEEEccCCCeeEEEEEcCCCCcEE
Confidence                22566666666  8999999999877

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=94.71  E-value=0.2  Score=59.49  Aligned_cols=106  Identities=12%  Similarity=0.088  Sum_probs=68.2

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeC-CC-ceeeccccccCCCCCeEEEecCCCCeEE-EEecCCCceeeecccHHH
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGT-GR-PIYSSYQASFNSNASEFYLDVDEDWELY-FHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY-~~~~~~G~l~~~~~~~~~  124 (613)
                      +..+++++ +|.|+.+|..+|+.+- +.. .. .+...   ... ++..+++.. .++.|| .++..+|+.+.+. . ..
T Consensus       308 G~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~---~~s-dg~~l~~~s-~~~~l~~~~d~~~~~~~~l~-~-~~  378 (1045)
T 1k32_A          308 GDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRR---GGD-TKVAFIHGT-REGDFLGIYDYRTGKAEKFE-E-NL  378 (1045)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEE---CSS-SEEEEEEEE-TTEEEEEEEETTTCCEEECC-C-CC
T ss_pred             CCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEee---eEc-CCCeEEEEE-CCCceEEEEECCCCCceEec-C-Cc
Confidence            33455455 8999999999887653 322 22 22222   233 333344444 489999 9999887764443 1 11


Q ss_pred             HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEe
Q 007199          125 YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       125 ~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      .-..++.++.||. +++++.+++++.+|+.||++.....
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            1224567777885 5678889999999999999987764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.62  E-value=0.39  Score=47.30  Aligned_cols=108  Identities=13%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             CCCEEEEE--------ecCCcEEEEeCCCCeeeEEeeCC------CceeeccccccCCCCCeEEEecCCCCeEEEEecCC
Q 007199           47 EPDVALVA--------ALDGTIHLVDTKLGKIRWSFGTG------RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRF  112 (613)
Q Consensus        47 ~~~~v~v~--------t~dG~l~ald~~tG~~~W~~~~~------~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~  112 (613)
                      .++.+|++        +.+|.|+.+|..+|+..- +...      ..+.+   ...+.+...+|+... +..|+.+|.. 
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~---i~~~~~~g~l~v~~~-~~~l~~~d~~-  100 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAG---CQCDRDANQLFVADM-RLGLLVVQTD-  100 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEE---EEECSSSSEEEEEET-TTEEEEEETT-
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCce---EEEecCCCcEEEEEC-CCCEEEEeCC-
Confidence            34667777        789999999999998752 2220      11111   112222135677666 4489999998 


Q ss_pred             CceeeecccHHHHh----hhCceeecCCcEEEEeec----------------ceEEEEECCCCcEEEEE
Q 007199          113 GKMKKLSSSAEEYI----RRMPYISKDGGVTLGAMK----------------TSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       113 G~l~~~~~~~~~~v----~~sP~~~~dg~v~~Gs~~----------------~~~~~vD~~tG~~~~~~  161 (613)
                      |+...+........    -..-+++.||.+|++...                +.++.+|+. |+.....
T Consensus       101 g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A          101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            88743302111000    012235568899998754                579999987 8876543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.049  Score=59.70  Aligned_cols=145  Identities=12%  Similarity=0.013  Sum_probs=88.7

Q ss_pred             CCEEEEEecCCcEEEEeCCCCe-eeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           48 PDVALVAALDGTIHLVDTKLGK-IRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~-~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      ++.+++|+.||+|+..|..+|+ +...+.. ..+|.+-. ...+.+...+++-++.||.+..+|.++++. ...+.... 
T Consensus       277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~-~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~  354 (524)
T 2j04_B          277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS-TAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFR  354 (524)
T ss_dssp             SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE-EECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECS
T ss_pred             CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE-EEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccc
Confidence            4689999999999999999884 4455543 34454320 011111114778888899999999887654 11111100 


Q ss_pred             --HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          125 --YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       125 --~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                        .| .+-+++-||. +.+|+.++++...|.++|+....+..-...    +.      .+       .++|       ..
T Consensus       355 ~~~v-~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~----V~------sv-------a~Sp-------~g  409 (524)
T 2j04_B          355 GSNL-VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT----IT------AI-------GVSR-------LH  409 (524)
T ss_dssp             CCSC-CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC----EE------EE-------ECCS-------SC
T ss_pred             cCcc-cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCc----eE------EE-------EeCC-------CC
Confidence              01 2233555564 456788999999999999987766532111    00      00       1111       12


Q ss_pred             cEEEEEeeeeEEEEEeCC
Q 007199          202 QLVYIMRTDYVLQSTSQD  219 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~  219 (613)
                      ..|.-|..|++|+.+|..
T Consensus       410 ~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          410 PMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CBCEEEETTTEEECCBSC
T ss_pred             CeEEEEECCCEEEEEech
Confidence            367789999999988864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.49  E-value=0.77  Score=48.97  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             CCCCEEEEEecC---C-----cEEEEeCCC-----CeeeEEeeCCC---ceeec-cc-------cccC--CCCCeEEEec
Q 007199           46 PEPDVALVAALD---G-----TIHLVDTKL-----GKIRWSFGTGR---PIYSS-YQ-------ASFN--SNASEFYLDV   99 (613)
Q Consensus        46 ~~~~~v~v~t~d---G-----~l~ald~~t-----G~~~W~~~~~~---~i~s~-~~-------~~~~--~~~~~~~i~~   99 (613)
                      ..|.++||.++.   |     .|-.||...     |+++-+.....   .+.+. +.       ....  .+...+|+++
T Consensus        23 ~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~  102 (462)
T 2ece_A           23 PPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPG  102 (462)
T ss_dssp             CCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEB
T ss_pred             CcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEcc
Confidence            478999999887   2     467778777     99999998644   22221 10       0112  3445789999


Q ss_pred             CCCCeEEEEecCCC--ceeeecccH--HHHhh----hCce---eecCCcEEEEeec-------ceEEEEECCCCcEEEEE
Q 007199          100 DEDWELYFHSKRFG--KMKKLSSSA--EEYIR----RMPY---ISKDGGVTLGAMK-------TSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       100 ~~DG~lY~~~~~~G--~l~~~~~~~--~~~v~----~sP~---~~~dg~v~~Gs~~-------~~~~~vD~~tG~~~~~~  161 (613)
                      -.++.+|.+|..+-  +. ++.=++  +++..    +.|.   .+-|| +|+..-.       +.++.+|++|++++-++
T Consensus       103 l~s~~I~viD~~t~p~~p-~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~  180 (462)
T 2ece_A          103 LRSSRIYIIDTKPNPREP-KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW  180 (462)
T ss_dssp             TTTCCEEEEECCSCTTSC-EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC
T ss_pred             CCCCeEEEEECCCCCCCc-eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE
Confidence            99999999998644  33 222233  33332    2342   34588 8873322       58999999999999999


Q ss_pred             ecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEe--------------------eeeEEEEEeCCCC
Q 007199          162 VLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMR--------------------TDYVLQSTSQDSG  221 (613)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr--------------------~d~~l~a~d~~~G  221 (613)
                      ..+...  ..+..+     +       ...|        +..+++.+                    -+.+|+.+|.+++
T Consensus       181 ~~~~~~--~~~~Yd-----~-------~~~p--------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          181 EIDRGD--QYLAYD-----F-------WWNL--------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CSBCTT--CCCCCC-----E-------EEET--------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             ccCCCC--ccccce-----E-------EECC--------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            755321  111100     0       0011        11233333                    2688999999999


Q ss_pred             ceEEEEEece
Q 007199          222 EVLWNVAYAD  231 (613)
Q Consensus       222 ~~~Wn~t~~~  231 (613)
                      ++.-++.+++
T Consensus       239 k~~~tI~vg~  248 (462)
T 2ece_A          239 KRIHSLTLGE  248 (462)
T ss_dssp             EEEEEEESCT
T ss_pred             cEeeEEecCC
Confidence            9999888873

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=94.48  E-value=0.09  Score=57.72  Aligned_cols=54  Identities=22%  Similarity=0.122  Sum_probs=40.9

Q ss_pred             CeEEEEecCCCceeeecccHHHHhhhCceeecCCcEE-EEeecc--eEEEEECCCCcEE
Q 007199          103 WELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGVT-LGAMKT--SVFLVDVKSGRVV  158 (613)
Q Consensus       103 G~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~v~-~Gs~~~--~~~~vD~~tG~~~  158 (613)
                      +.||.+|..+|+++.+.-  ......+|..+-||..+ .+..++  ++|.+|..||+..
T Consensus       175 ~~i~~~d~~~g~~~~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRVFDS--GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEEEETTTCCCEEECC--SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             eEEEEEcCCCCCceEeec--CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            789999999998855432  22223779999899644 455667  8999999999988

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.43  E-value=0.15  Score=50.58  Aligned_cols=166  Identities=10%  Similarity=0.061  Sum_probs=88.8

Q ss_pred             CCCEEEEEecCCcEEEEeCCC--CeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee-cccH
Q 007199           47 EPDVALVAALDGTIHLVDTKL--GKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL-SSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~t--G~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~-~~~~  122 (613)
                      .+..++.|+.||+|+..|..+  ++.+-++.. ..+|.+-  .........+++-++.||.+..+|..+|..+.. .+..
T Consensus        20 ~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v--~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~   97 (297)
T 2pm7_B           20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV   97 (297)
T ss_dssp             TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEE--EECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC
T ss_pred             CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEE--EecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec
Confidence            567899999999999998764  455556643 2345432  100111124777788899999999988753111 1111


Q ss_pred             H-HHhhhCceeecC--C-cEEEEeecceEEEEECCCCcE--EEEEecCC-CCCCCCCcCCCCCccccCCCcccccccccc
Q 007199          123 E-EYIRRMPYISKD--G-GVTLGAMKTSVFLVDVKSGRV--VDNYVLDF-SASTPGFQSDENKHVVPVDGYEELVESGVG  195 (613)
Q Consensus       123 ~-~~v~~sP~~~~d--g-~v~~Gs~~~~~~~vD~~tG~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (613)
                      . ..|.+ -.++.+  | .+.+|+.|+++...|..++..  ...+.... .+.+     .   ...|.. ... .. ...
T Consensus        98 h~~~v~~-v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~-----~---~~~p~~-~~~-~~-~~~  165 (297)
T 2pm7_B           98 HSASVNS-VQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS-----A---SWAPAT-IEE-DG-EHN  165 (297)
T ss_dssp             CSSCEEE-EEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE-----E---EECCCC-----------
T ss_pred             CCCceeE-EEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce-----E---eecCCc-ccc-cc-cCC
Confidence            1 11111 112212  3 577899999999999988742  11221110 0000     0   000000 000 00 000


Q ss_pred             cccccccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          196 NLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       196 ~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      .+ .....+..|..|++|+.+|.+++...|..
T Consensus       166 ~~-~~~~~l~sgs~D~~v~lwd~~~~~~~~~~  196 (297)
T 2pm7_B          166 GT-KESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             CC-CCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence            00 01237888999999999998887765543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.36  E-value=0.14  Score=52.01  Aligned_cols=147  Identities=10%  Similarity=0.061  Sum_probs=85.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEee--CC--CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee-eeccc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFG--TG--RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK-KLSSS  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~--~~--~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~-~~~~~  121 (613)
                      .+.++..|+.||+|+.-|..+++..-...  .+  .+|.+-   ....+ ..+++.++.||.+..++..++..+ ...+.
T Consensus        27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~---~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  102 (345)
T 3fm0_A           27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV---AWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLE  102 (345)
T ss_dssp             TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEE---EECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEE---EECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence            55778899999999999988887544322  21  234332   11222 246677778999999998776541 11222


Q ss_pred             HH-HHhhhCceeecCC-cEEEEeecceEEEEECCCCcEE---EEEecCCCCCCCCCcCCCCCccccCCCccccccccccc
Q 007199          122 AE-EYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVV---DNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGN  196 (613)
Q Consensus       122 ~~-~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (613)
                      .. ..|. +-.++.|| .+.+|+.|++++.-|..+++..   ..+.....    ++     . .+       ...|    
T Consensus       103 ~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~----~v-----~-~~-------~~~p----  160 (345)
T 3fm0_A          103 GHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ----DV-----K-HV-------VWHP----  160 (345)
T ss_dssp             CCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS----CE-----E-EE-------EECS----
T ss_pred             CCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC----Ce-----E-EE-------EECC----
Confidence            11 1121 22234455 4667999999999999887543   22221110    00     0 00       0111    


Q ss_pred             ccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          197 LKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       197 ~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                         ....+..|..|+.|+.+|..++.
T Consensus       161 ---~~~~l~s~s~d~~i~~w~~~~~~  183 (345)
T 3fm0_A          161 ---SQELLASASYDDTVKLYREEEDD  183 (345)
T ss_dssp             ---SSSCEEEEETTSCEEEEEEETTE
T ss_pred             ---CCCEEEEEeCCCcEEEEEecCCC
Confidence               13478889999999988876664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.22  E-value=0.32  Score=48.94  Aligned_cols=103  Identities=13%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             EEEEEecCC------cEEEEeCCCCeeeEE-ee--CCCceeeccccccCCCCCeEEEecC--CCCeEEEEecCCCceeee
Q 007199           50 VALVAALDG------TIHLVDTKLGKIRWS-FG--TGRPIYSSYQASFNSNASEFYLDVD--EDWELYFHSKRFGKMKKL  118 (613)
Q Consensus        50 ~v~v~t~dG------~l~ald~~tG~~~W~-~~--~~~~i~s~~~~~~~~~~~~~~i~~~--~DG~lY~~~~~~G~l~~~  118 (613)
                      .+|||+..+      .+|.+|..+|+.... ..  .+.|..    .....+.. +|+...  .|+.++.++..+|.++.+
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~----~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~   78 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTY----LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL   78 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCC----EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcce----EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe
Confidence            588897653      278889999987652 21  112211    11222333 665553  378999999887776333


Q ss_pred             cccHHHHhhhCc---eeecCCc-EEEEe-ecceEEEEECC-CCcEEE
Q 007199          119 SSSAEEYIRRMP---YISKDGG-VTLGA-MKTSVFLVDVK-SGRVVD  159 (613)
Q Consensus       119 ~~~~~~~v~~sP---~~~~dg~-v~~Gs-~~~~~~~vD~~-tG~~~~  159 (613)
                      ..-..  ....|   +++.||. +|+++ .++++..+|.. +|+...
T Consensus        79 ~~~~~--~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           79 NTVVA--PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             EEEEE--ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             eeeec--CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence            32110  11233   3567886 88877 66788888874 555443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=94.21  E-value=0.27  Score=53.78  Aligned_cols=153  Identities=10%  Similarity=-0.005  Sum_probs=89.8

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeee-----------EEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIR-----------WSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM  115 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~-----------W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l  115 (613)
                      .+++..|+.||+|+..|..+++..           -++.. ..++.+-   ....+  ..++.++.||.+..+|..+|..
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv---~~s~~--~~lasgs~DgtV~lWD~~~~~~  299 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF---DFLSP--TTVVCGFKNGFVAEFDLTDPEV  299 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE---EESSS--SEEEEEETTSEEEEEETTBCSS
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE---EecCC--CeEEEEeCCCEEEEEECCCCCC
Confidence            468888999999999998877532           22221 1223221   11111  3677778899999999988743


Q ss_pred             eeecccHH-HHhhhC-ceeecCC--cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccc
Q 007199          116 KKLSSSAE-EYIRRM-PYISKDG--GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVE  191 (613)
Q Consensus       116 ~~~~~~~~-~~v~~s-P~~~~dg--~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (613)
                      ....+... ..|.+- -+.+.||  .+..||.|+++..-|..+|+....+.......  .+  .    .       -.++
T Consensus       300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~--~v--~----~-------v~fs  364 (524)
T 2j04_B          300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS--NL--V----P-------VVYC  364 (524)
T ss_dssp             CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC--SC--C----C-------EEEE
T ss_pred             ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC--cc--c----c-------eEeC
Confidence            11112211 122221 0224455  46789999999999999998765543211000  00  0    0       0111


Q ss_pred             cccccccccccEEEEEeeeeEEEEEeCCCCceEEEE
Q 007199          192 SGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       192 ~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      |.       ...+..+..|.+|+.+|.++|....++
T Consensus       365 p~-------~~~l~s~~~d~tv~lwd~~~~~~~~~l  393 (524)
T 2j04_B          365 PQ-------IYSYIYSDGASSLRAVPSRAAFAVHPL  393 (524)
T ss_dssp             TT-------TTEEEEECSSSEEEEEETTCTTCCEEE
T ss_pred             CC-------cCeEEEeCCCCcEEEEECcccccceee
Confidence            11       236777889999999999988765544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=94.14  E-value=0.16  Score=57.03  Aligned_cols=110  Identities=5%  Similarity=-0.009  Sum_probs=68.8

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCCc----eeeccccccCCCCCeEEEecC--------CCCeEEEEecCCCcee
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGRP----IYSSYQASFNSNASEFYLDVD--------EDWELYFHSKRFGKMK  116 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~----i~s~~~~~~~~~~~~~~i~~~--------~DG~lY~~~~~~G~l~  116 (613)
                      +.+++++.||+|+..|..||+..-.+.....    +.+.   ....|+..+.....        .++.+|.+|..+|+.+
T Consensus        28 g~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~---~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  104 (723)
T 1xfd_A           28 TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRY---EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (723)
T ss_dssp             SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEE---EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             CcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceE---EECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence            3344557899999999999998877754321    2221   12223323333322        1489999999988874


Q ss_pred             eecccHHH-HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEe
Q 007199          117 KLSSSAEE-YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       117 ~~~~~~~~-~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      .+...... .-..+|.++-||. +.+++. .++|.+|..+|+......
T Consensus       105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A          105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec
Confidence            44332110 0124577887884 455554 799999999999876554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.04  E-value=0.39  Score=53.77  Aligned_cols=104  Identities=13%  Similarity=0.049  Sum_probs=61.3

Q ss_pred             CCEEEEEecCCcEEEEeCCCCee--eEEeeCC-----------------CceeeccccccCCCCCeEEEecCCCCeEEEE
Q 007199           48 PDVALVAALDGTIHLVDTKLGKI--RWSFGTG-----------------RPIYSSYQASFNSNASEFYLDVDEDWELYFH  108 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~--~W~~~~~-----------------~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~  108 (613)
                      ++.++.++.|| | .+|..||+.  .=-+...                 .++.+-   ....+.  .++... |+.+|.+
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~---~~spd~--~~~~~~-~~~i~~~  106 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRT---LDAGRG--LVVLFT-QGGLVGF  106 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEE---EETTTT--EEEEEE-TTEEEEE
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeE---EECCCC--eEEEEE-CCEEEEE
Confidence            56677777777 8 899999987  3222211                 122221   122222  333344 7999999


Q ss_pred             ecCCCceeeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCC-----CcEEEEE
Q 007199          109 SKRFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKS-----GRVVDNY  161 (613)
Q Consensus       109 ~~~~G~l~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~t-----G~~~~~~  161 (613)
                      |..+|+...+... ... ..+|.++-||..++-+.+++++..|..+     |+.....
T Consensus       107 d~~~~~~~~l~~~-~~~-~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~  162 (706)
T 2z3z_A          107 DMLARKVTYLFDT-NEE-TASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVT  162 (706)
T ss_dssp             ETTTTEEEEEECC-TTC-CTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESC
T ss_pred             ECCCCceEEccCC-ccc-ccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEec
Confidence            9998877444332 222 3568888888644446889999999999     8876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.90  E-value=0.25  Score=50.41  Aligned_cols=104  Identities=9%  Similarity=0.046  Sum_probs=60.4

Q ss_pred             cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeE-EEecCCC----CeEEEEecCCCceeeecccHHHHhhhCc
Q 007199           56 LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEF-YLDVDED----WELYFHSKRFGKMKKLSSSAEEYIRRMP  130 (613)
Q Consensus        56 ~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~-~i~~~~D----G~lY~~~~~~G~l~~~~~~~~~~v~~sP  130 (613)
                      .++.||.+|..+|+..........+...  ...+.+...+ |+....+    ..||.++..++..+.+.-..+.....+|
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~--~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLGHP--IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE  243 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEE--EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcccccc--eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence            4568999999999887766433333322  1112122223 3332222    5799999887765333321111122456


Q ss_pred             eeecCCc-EEEEeec-----ceEEEEECCCCcEEEEE
Q 007199          131 YISKDGG-VTLGAMK-----TSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       131 ~~~~dg~-v~~Gs~~-----~~~~~vD~~tG~~~~~~  161 (613)
                      .++.||. +++.+.+     .++|.+|..+|+.....
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~  280 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM  280 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence            7777885 5666554     55999999999876544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=93.85  E-value=0.23  Score=55.82  Aligned_cols=105  Identities=12%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCc----eeeccccccCCCCCeEEEec--------CCCCeEEEEecCCCc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRP----IYSSYQASFNSNASEFYLDV--------DEDWELYFHSKRFGK  114 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~----i~s~~~~~~~~~~~~~~i~~--------~~DG~lY~~~~~~G~  114 (613)
                      .++.+++++.||+|+..|..+|+.+-.+.....    +.+.   ....|+..+.+..        +.|+.||.+|..+|+
T Consensus        25 ~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~  101 (719)
T 1z68_A           25 SGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNY---GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE  101 (719)
T ss_dssp             SSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEE---EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeE---EECCCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence            345677777899999999999998755532111    2221   1222332232222        237999999999887


Q ss_pred             e---eeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEE
Q 007199          115 M---KKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVD  159 (613)
Q Consensus       115 l---~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~  159 (613)
                      .   ++++    .. ..+|.++-||..++-..++++|..|..+|+.+.
T Consensus       102 ~~~~~~l~----~~-~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A          102 FVRGNELP----RP-IQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             ECCSSCCC----SS-BCCEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred             cccceecC----cc-cccceECCCCCEEEEEECCeEEEEeCCCCCcEE
Confidence            7   3432    22 356888889964444458899999999998864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.84  E-value=0.43  Score=48.38  Aligned_cols=107  Identities=7%  Similarity=0.024  Sum_probs=66.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCee--eEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee--ccc
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKI--RWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL--SSS  121 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~--~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~--~~~  121 (613)
                      .+..++.|+.||+++.-|..+++.  +-++.. ..+|.+-   ....+ ..+++.++.||.++.+|..++.....  .+.
T Consensus        72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v---~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  147 (345)
T 3fm0_A           72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV---AWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLN  147 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred             CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE---EEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence            567899999999999888877753  445543 2344432   11112 24777788899999999877643111  111


Q ss_pred             HH-HHhhhCceeecCC-cEEEEeecceEEEEECCCCcEE
Q 007199          122 AE-EYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVV  158 (613)
Q Consensus       122 ~~-~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~  158 (613)
                      .. ..|. +-..+.|| .+.+|+.|+++...|..+++..
T Consensus       148 ~h~~~v~-~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~  185 (345)
T 3fm0_A          148 SHTQDVK-HVVWHPSQELLASASYDDTVKLYREEEDDWV  185 (345)
T ss_dssp             CCCSCEE-EEEECSSSSCEEEEETTSCEEEEEEETTEEE
T ss_pred             CcCCCeE-EEEECCCCCEEEEEeCCCcEEEEEecCCCEE
Confidence            11 1111 11233344 5778999999999999888754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.83  E-value=0.85  Score=47.89  Aligned_cols=108  Identities=12%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             CCCEEEEEec-CCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCC-eEEEEecCCCce-eee-ccc-
Q 007199           47 EPDVALVAAL-DGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDW-ELYFHSKRFGKM-KKL-SSS-  121 (613)
Q Consensus        47 ~~~~v~v~t~-dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG-~lY~~~~~~G~l-~~~-~~~-  121 (613)
                      .++.+|++.. +++|+.+|..+|++.-....+....    .....+...+|+.....+ .+|.++..++.. ..+ ... 
T Consensus       140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~----ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~  215 (409)
T 3hrp_A          140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK----PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS  215 (409)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB----CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT
T ss_pred             CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc----eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc
Confidence            3455666654 4788888888887764443322111    122333345676666333 899999976654 222 000 


Q ss_pred             -HHHHhhhCceeec-CCcEEEEeecceEEEEECCCCcEEE
Q 007199          122 -AEEYIRRMPYISK-DGGVTLGAMKTSVFLVDVKSGRVVD  159 (613)
Q Consensus       122 -~~~~v~~sP~~~~-dg~v~~Gs~~~~~~~vD~~tG~~~~  159 (613)
                       ..... .+-+++. +|.+|+...++.++.+|+.+|+...
T Consensus       216 ~~~~~p-~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~  254 (409)
T 3hrp_A          216 TFSGKI-GAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL  254 (409)
T ss_dssp             TSCSCC-CBCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred             hhcCCc-EEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence             01111 1223444 7899997777889999999998654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.79  E-value=0.39  Score=46.21  Aligned_cols=124  Identities=10%  Similarity=0.005  Sum_probs=0.0

Q ss_pred             EEEEecCCcEEEEeCCCCeeeEEeeCCC----------ceeec------cccccCCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           51 ALVAALDGTIHLVDTKLGKIRWSFGTGR----------PIYSS------YQASFNSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        51 v~v~t~dG~l~ald~~tG~~~W~~~~~~----------~i~s~------~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      +.+.- ||.||||  .+|+ +|+++...          .....      -....+.+. .+|.. + ||.||.+++.+..
T Consensus        46 laf~P-~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav-~-dG~iyr~~pP~~~  118 (236)
T 1tl2_A           46 LFLSP-GGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV-S-KDKLYKASPPQSD  118 (236)
T ss_dssp             EEECT-TSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE-E-TTEEEEESCCCST
T ss_pred             EEECC-CccEEEE--eCCe-EEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe-C-CCEEEEeCCCcCC


Q ss_pred             eeeecccHHHHhhhCceeecCC----cEEEEeecceEEEEECCCCcEEEEEec----------------CCCCCCCCCcC
Q 007199          115 MKKLSSSAEEYIRRMPYISKDG----GVTLGAMKTSVFLVDVKSGRVVDNYVL----------------DFSASTPGFQS  174 (613)
Q Consensus       115 l~~~~~~~~~~v~~sP~~~~dg----~v~~Gs~~~~~~~vD~~tG~~~~~~~~----------------~~~~~~~~~~~  174 (613)
                      -..|-.+       ++.+.+.|    ..++..-++++|||+  .|++.+....                ++         
T Consensus       119 ~~~Wl~~-------a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g---------  180 (236)
T 1tl2_A          119 TDNWIAR-------ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG---------  180 (236)
T ss_dssp             TCCHHHH-------SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS---------
T ss_pred             CCceecc-------ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC---------


Q ss_pred             CCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEE
Q 007199          175 DENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~W  225 (613)
                                              +..-+++|-..|++|++++  +|+..+
T Consensus       181 ------------------------~~~yr~l~f~~~G~l~~v~--~g~~Y~  205 (236)
T 1tl2_A          181 ------------------------WDTFKFLFFSSVGTLFGVQ--GGKFYE  205 (236)
T ss_dssp             ------------------------GGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             ------------------------cceEEEEEECCCCcEEEEe--CCeEEe

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.63  E-value=0.34  Score=48.79  Aligned_cols=107  Identities=7%  Similarity=-0.047  Sum_probs=65.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCC--eeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce---eeec-
Q 007199           47 EPDVALVAALDGTIHLVDTKLG--KIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM---KKLS-  119 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG--~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l---~~~~-  119 (613)
                      .+..++.|+.||+|+.-|..++  +.+-++.. ..+|.+-  ...+......++-++.||.+..+|..++..   ..|. 
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS--DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE--EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence            5678999999999999987776  45555543 2345443  111111123566777899999998765421   0111 


Q ss_pred             ---cc--HHHHhhhCceeecCCcEEEEeecceEEEEECCCCc
Q 007199          120 ---SS--AEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGR  156 (613)
Q Consensus       120 ---~~--~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~  156 (613)
                         +.  -...|. +-..+.++.++.|+.|+++..-|..+|+
T Consensus       242 ~~~~~~~h~~~v~-~v~~s~~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          242 EAILPDVHKRQVY-NVAWGFNGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEECCSCCSSCEE-EEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred             eeecccccccceE-EEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence               11  011111 1223446778899999999999998885

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=93.58  E-value=0.73  Score=47.68  Aligned_cols=170  Identities=8%  Similarity=-0.051  Sum_probs=81.1

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEee-CCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFG-TGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~-~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      +.++..|+.|++|+.-|..++...-.+. -..++.+-  . ...+...+++.++.||.+..+|..+|+. .....-....
T Consensus       156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v--~-~~p~~~~~l~~~~~d~~v~~wd~~t~~~-~~~~~~~~~~  231 (393)
T 4gq1_A          156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISV--Q-FRPSNPNQLIVGERNGNIRIFDWTLNLS-AEENSQTELV  231 (393)
T ss_dssp             EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEE--E-EETTEEEEEEEEETTSEEEEEETTCCC-----------C
T ss_pred             CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEE--E-ECCCCCceEEecCCCCEEEEEECCCCcc-cccccccCCc
Confidence            4567778899999999988777665543 34455542  1 1111124677788899999999988765 2221111000


Q ss_pred             hh---------------------Cce-----eecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCC-CCCCcCCCCC
Q 007199          127 RR---------------------MPY-----ISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSAS-TPGFQSDENK  178 (613)
Q Consensus       127 ~~---------------------sP~-----~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~-~~~~~~~~~~  178 (613)
                      ..                     ...     ...|| .++.++.++++..-|..+|+....+....... ...+..+.+.
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence            00                     000     11344 46779999999999999988776664322110 0000000000


Q ss_pred             ccccCCCcccccccccccccccccE-EEEEeeeeEEEEEeCCCCceEEEE
Q 007199          179 HVVPVDGYEELVESGVGNLKRIRQL-VYIMRTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~igr~d~~l~a~d~~~G~~~Wn~  227 (613)
                      ..........+..+     . .++. +.-|..|+.|+.+|..+|...-..
T Consensus       312 ~~~~~~~~~~~~~~-----~-~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~  355 (393)
T 4gq1_A          312 ISLFPSLLGACPHP-----R-YMDYFATAHSQHGLIQLINTYEKDSNSIP  355 (393)
T ss_dssp             ECSSCCSSCCEECS-----S-CTTEEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred             ccccCcceeEEEcc-----C-CCCEEEEEECCCCEEEEEECCCCcEEEEe
Confidence            00000000001111     0 1223 344777999999999998876543

>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}

Probab=93.50  E-value=0.26  Score=53.81  Aligned_cols=108  Identities=14%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             CEEEEEecCC---cEEEEeCCC---CeeeEEeeCCC-----ceeeccccccCCCCCeEEEecC------CCCeEEEEecC
Q 007199           49 DVALVAALDG---TIHLVDTKL---GKIRWSFGTGR-----PIYSSYQASFNSNASEFYLDVD------EDWELYFHSKR  111 (613)
Q Consensus        49 ~~v~v~t~dG---~l~ald~~t---G~~~W~~~~~~-----~i~s~~~~~~~~~~~~~~i~~~------~DG~lY~~~~~  111 (613)
                      .+++|+++..   .+||||..+   .+++|.|....     -.++.++.....+...+.|.++      ....||.+|..
T Consensus       152 rtvLvggmg~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~  231 (570)
T 3hx6_A          152 HTVLIGSLRAGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDME  231 (570)
T ss_dssp             EEEEEEECTTSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETT
T ss_pred             eEEEEEecCCCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECC
Confidence            5677887652   799999655   99999998422     1222221111112234434333      24699999999


Q ss_pred             CCceeeecccHHHH-----hhhCceee-cC--C---cEEEEeecceEEEEECCCCcE
Q 007199          112 FGKMKKLSSSAEEY-----IRRMPYIS-KD--G---GVTLGAMKTSVFLVDVKSGRV  157 (613)
Q Consensus       112 ~G~l~~~~~~~~~~-----v~~sP~~~-~d--g---~v~~Gs~~~~~~~vD~~tG~~  157 (613)
                      +|.+ .|.+++..-     .-++|.+. .|  |   .+|+|-..++++-+|..+...
T Consensus       232 tG~l-i~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~  287 (570)
T 3hx6_A          232 TGAI-TRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV  287 (570)
T ss_dssp             TCCE-EEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred             CCce-EEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence            9999 777765421     11345543 22  2   589999999999999887665

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.47  E-value=0.33  Score=48.00  Aligned_cols=156  Identities=12%  Similarity=0.034  Sum_probs=84.8

Q ss_pred             CCEEEEEecCCcEEEEeCCCCe--eeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee-eecccHH
Q 007199           48 PDVALVAALDGTIHLVDTKLGK--IRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK-KLSSSAE  123 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~--~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~-~~~~~~~  123 (613)
                      +..++.|+.||+|+.-|..+|+  ..-++.. ..+|.+-  ...+.....+++.++.||.+..+|..++... ...+...
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v--~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h  144 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV--QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEE--EECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEE--EeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence            5688899999999999988874  3333332 2233322  1011111246777788999999998776321 1111100


Q ss_pred             -HHh---hhCcee----------ecCCcEEEEeecceEEEEECCCCcE----EEEEecCCCCCCCCCcCCCCCccccCCC
Q 007199          124 -EYI---RRMPYI----------SKDGGVTLGAMKTSVFLVDVKSGRV----VDNYVLDFSASTPGFQSDENKHVVPVDG  185 (613)
Q Consensus       124 -~~v---~~sP~~----------~~dg~v~~Gs~~~~~~~vD~~tG~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (613)
                       ..|   .-+|..          .....+.+|+.|+++..-|..+|+.    ...+..-..    ++.      .+    
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~------~v----  210 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVR------DV----  210 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEE------EE----
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceE------EE----
Confidence             001   112210          0012577899999999999998873    333321110    000      00    


Q ss_pred             cccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEE
Q 007199          186 YEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWN  226 (613)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn  226 (613)
                         .++|...    ....+.-|..|++|+.+|.+++...|.
T Consensus       211 ---~~sp~~~----~~~~las~s~D~~v~iWd~~~~~~~~~  244 (297)
T 2pm7_B          211 ---AWSPTVL----LRSYMASVSQDRTCIIWTQDNEQGPWK  244 (297)
T ss_dssp             ---EECCCCS----SSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred             ---EECCCCC----CceEEEEEECCCcEEEEEeCCCCCccc
Confidence               1111100    023677788999999999877654444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.43  E-value=0.62  Score=46.78  Aligned_cols=65  Identities=12%  Similarity=0.121  Sum_probs=35.4

Q ss_pred             CCCeEEEecCCCCeEEEEecC--CCceeeecccHHHHh--------hhCceeecCCc-EEEEe-ecceEEEEECC-CCc
Q 007199           91 NASEFYLDVDEDWELYFHSKR--FGKMKKLSSSAEEYI--------RRMPYISKDGG-VTLGA-MKTSVFLVDVK-SGR  156 (613)
Q Consensus        91 ~~~~~~i~~~~DG~lY~~~~~--~G~l~~~~~~~~~~v--------~~sP~~~~dg~-v~~Gs-~~~~~~~vD~~-tG~  156 (613)
                      +...+|+.+..++.++.++..  +|++.... .+...-        ....+++.||. +|+.. .++++..+|.. +|+
T Consensus       197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLG-IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEE-EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCceEEee-eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            333467767777877666554  56652211 111100        11245677886 77654 46777777765 453

>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*

Probab=93.38  E-value=0.84  Score=50.06  Aligned_cols=114  Identities=9%  Similarity=-0.015  Sum_probs=72.5

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCce--eeccccccCCCCCeEEEe-------------cCCCCeEEEEecCC
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPI--YSSYQASFNSNASEFYLD-------------VDEDWELYFHSKRF  112 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i--~s~~~~~~~~~~~~~~i~-------------~~~DG~lY~~~~~~  112 (613)
                      ++.+.++.- ..++-+|. .|+++|++......  .++-....+.+ ..+++.             ...|..++-+| .+
T Consensus       217 nG~l~~g~G-~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nG-n~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~t  292 (571)
T 3elq_A          217 RGTFTAVQG-QHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNG-TVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KS  292 (571)
T ss_dssp             TSCEEEEEB-TEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTS-CEEEEEEETTEECTTSCEECCCSCEEEEEC-TT
T ss_pred             CCCEEEecC-cEEEEECC-CCcEEEEEECCCCccccccceEEcCCC-cEEEEEecccccCCCCcccceeccEEEEEC-CC
Confidence            444444532 24888885 69999999876432  12211112222 233322             12366799999 89


Q ss_pred             CceeeecccHHHHhhhC--------------------------------ce-------------------e-ecCCcEEE
Q 007199          113 GKMKKLSSSAEEYIRRM--------------------------------PY-------------------I-SKDGGVTL  140 (613)
Q Consensus       113 G~l~~~~~~~~~~v~~s--------------------------------P~-------------------~-~~dg~v~~  140 (613)
                      |++ .|.|.+.+.+...                                |+                   . ..|+.+++
T Consensus       293 GeV-v~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~li  371 (571)
T 3elq_A          293 GRV-VDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIIL  371 (571)
T ss_dssp             SCE-EEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEE
T ss_pred             CCE-EEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEE
Confidence            999 9999888776321                                11                   1 12456888


Q ss_pred             EeecceEEEEECCCCcEEEEEecCCCC
Q 007199          141 GAMKTSVFLVDVKSGRVVDNYVLDFSA  167 (613)
Q Consensus       141 Gs~~~~~~~vD~~tG~~~~~~~~~~~~  167 (613)
                      .++..+++.||. ||+++|.++....+
T Consensus       372 SsR~~~I~~Id~-tG~V~W~LGg~~~w  397 (571)
T 3elq_A          372 SSRHQGVVKIGR-DKQVKWILAPSKGW  397 (571)
T ss_dssp             EETTTEEEEEET-TSCEEEEESCSTTC
T ss_pred             ECCccEEEEEcC-CCcEEEEECCCCCC
Confidence            888889999996 99999999866543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=93.28  E-value=1  Score=43.09  Aligned_cols=110  Identities=14%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             CCCEEE-EEecCC--cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCC--CeEEEEecCCCceeeeccc
Q 007199           47 EPDVAL-VAALDG--TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDED--WELYFHSKRFGKMKKLSSS  121 (613)
Q Consensus        47 ~~~~v~-v~t~dG--~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~D--G~lY~~~~~~G~l~~~~~~  121 (613)
                      .+..++ .++.||  .||-+|..+|+..--......+...   ....+...+++....|  ..||.++..++....+.- 
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-  214 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGP---DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-  214 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEE---EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccc---eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-
Confidence            444444 677788  5666677777664333222333322   1222333455444434  456666666555533332 


Q ss_pred             HHHHhhhCceeecCCc-EEEEeec-----------ceEEEEECCCCcEEEEE
Q 007199          122 AEEYIRRMPYISKDGG-VTLGAMK-----------TSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       122 ~~~~v~~sP~~~~dg~-v~~Gs~~-----------~~~~~vD~~tG~~~~~~  161 (613)
                       ......++.++.||. +++++.+           ..++.+|..+|+.....
T Consensus       215 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          215 -SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             -CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             -CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence             112223466776775 5566654           67999999999875544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.20  E-value=0.97  Score=45.86  Aligned_cols=102  Identities=15%  Similarity=0.125  Sum_probs=62.3

Q ss_pred             EEEeCCCCeeeEEeeCCCceeec---cccccCCCCCeEEEecCC--CCeEEEEecCCCceeeecccHHHHhhhCceeecC
Q 007199           61 HLVDTKLGKIRWSFGTGRPIYSS---YQASFNSNASEFYLDVDE--DWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKD  135 (613)
Q Consensus        61 ~ald~~tG~~~W~~~~~~~i~s~---~~~~~~~~~~~~~i~~~~--DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~d  135 (613)
                      --+|..+|+..-++.........   .......++..+++....  +..||.+|..+|+...+.... ......|..+.|
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~spd   91 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK-GDNTFGGFISTD   91 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-CBCTTTCEECTT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-CCccccceECCC
Confidence            34688899888777543322110   011223333344333332  458999999988875553322 222334777778


Q ss_pred             Cc-EEEEeecceEEEEECCCCcEEEEEec
Q 007199          136 GG-VTLGAMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       136 g~-v~~Gs~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      |. +++.+.+..+|.+|+.+|+....+..
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~  120 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTV  120 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEec
Confidence            75 66788888999999999998776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=93.17  E-value=0.048  Score=62.62  Aligned_cols=78  Identities=13%  Similarity=0.063  Sum_probs=53.8

Q ss_pred             cCcccccccccccccceEEeeccCCCCcccccc-cc----ccccc-------cCC------CCCCCcccCCCCC--CCCC
Q 007199          261 IGDVESHLPCHTQMTASVYRLRDNSLPEFLSVI-GK----VAGWI-------SLP------GSSQNSLLGPVDR--NSPL  320 (613)
Q Consensus       261 ~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~-~~----~~~~~-------~~~------~~~~~~~~~~~~~--~~p~  320 (613)
                      +|.||..+..  ++.+.++.+.+|+++|.+|.. +.    ...++       .-|      ..++.+++++|++  .||+
T Consensus       645 ~g~ip~~l~~--l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          645 SGYIPKEIGS--MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             BSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccCCHHHhc--cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            6677777776  777778888888888888873 11    11122       112      3467889999998  7875


Q ss_pred             C-----CC--CCCCCCCCCCCCccccC
Q 007199          321 F-----LP--DKVDRPPLALPSTETEI  340 (613)
Q Consensus       321 ~-----~~--~~~~~~~l~~~~~~~~~  340 (613)
                      .     ++  .|.||+.||++|...|-
T Consensus       723 ~~~~~~~~~~~~~gN~~Lcg~~l~~C~  749 (768)
T 3rgz_A          723 MGQFETFPPAKFLNNPGLCGYPLPRCD  749 (768)
T ss_dssp             SSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred             chhhccCCHHHhcCCchhcCCCCcCCC
Confidence            3     33  28999999999988883

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=93.03  E-value=0.28  Score=49.87  Aligned_cols=75  Identities=20%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             EEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCC--CCcceeEEEEEEeCCEEEEEecCCCc
Q 007199          476 VFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQ--HPNIVRWYGVESDQDFVYLSLERCTC  551 (613)
Q Consensus       476 ~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~--HpnIV~l~g~~~~~~~~~LV~E~~~G  551 (613)
                      ...+.|+.|....+|+... ++..++||+-.......+.+|.+.|..+-.  ...+++++.++...+..++||||++|
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G  115 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK  115 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence            3456789999999998543 567889998877666788999888877633  35788999998888899999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.88  E-value=1.2  Score=44.70  Aligned_cols=144  Identities=12%  Similarity=0.073  Sum_probs=78.4

Q ss_pred             CEEEEEecCCcEEEEeCCCCe--eeEEeeCC---CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCce-----e-e
Q 007199           49 DVALVAALDGTIHLVDTKLGK--IRWSFGTG---RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKM-----K-K  117 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~--~~W~~~~~---~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l-----~-~  117 (613)
                      +++..|+.||+|+..|..+++  ..-.+..+   .+|.+-   ....+ ..+++.++.||.+..+|...+..     + .
T Consensus        25 ~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v---~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  100 (330)
T 2hes_X           25 GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV---AWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLL  100 (330)
T ss_dssp             TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEE---EECTT-SSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred             CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEE---EECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence            488999999999999988763  34444222   244432   11222 24667777899999998753211     0 1


Q ss_pred             ecccHH-HHhhhCceeecCC-cEEEEeecceEEEEECCCC----cEEEEEecCCCCCCCCCcCCCCCccccCCCcccccc
Q 007199          118 LSSSAE-EYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSG----RVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVE  191 (613)
Q Consensus       118 ~~~~~~-~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (613)
                      ..+... ..|. +-.++.|| .+.+|+.|+++..-|..++    +.+..+..-...    +.      .+       ...
T Consensus       101 ~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~----v~------~v-------~~~  162 (330)
T 2hes_X          101 AIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD----VK------HV-------IWH  162 (330)
T ss_dssp             EEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC----EE------EE-------EEC
T ss_pred             EEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc----eE------EE-------EEC
Confidence            112211 1121 22334455 4667999999999998433    334444221100    00      00       011


Q ss_pred             cccccccccccEEEEEeeeeEEEEEeCCCC
Q 007199          192 SGVGNLKRIRQLVYIMRTDYVLQSTSQDSG  221 (613)
Q Consensus       192 ~~~~~~~~~~~~v~igr~d~~l~a~d~~~G  221 (613)
                      |       ....|+-|..|++|+.+|..++
T Consensus       163 p-------~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          163 P-------SEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             S-------SSSEEEEEETTSCEEEEEEETT
T ss_pred             C-------CCCEEEEEcCCCeEEEEECCCC
Confidence            1       1347788888999988876555

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=92.88  E-value=0.31  Score=50.79  Aligned_cols=147  Identities=8%  Similarity=-0.001  Sum_probs=84.0

Q ss_pred             EEEecCCcEEEEeCCC-----CeeeEEee----CC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCc---eeee
Q 007199           52 LVAALDGTIHLVDTKL-----GKIRWSFG----TG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGK---MKKL  118 (613)
Q Consensus        52 ~v~t~dG~l~ald~~t-----G~~~W~~~----~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~---l~~~  118 (613)
                      +..+.||++..+|..+     |++.|+..    .+ .|.      ....+ ..+|+...  |.+|.+|..++.   ..+|
T Consensus       179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~------~~~~~-~~~~~vs~--~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA------QANYP-GMLVWAVA--SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE------EETTT-TEEEECBS--SCCEEEECCSSCCEEECCC
T ss_pred             EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc------ccccC-CEEEEEcC--CEEEEEECCCCcceEEEEE
Confidence            3345666776777666     77666321    11 121      01222 24454444  999999987543   2345


Q ss_pred             cccHHHHh--hhCc------eeecC-CcEEEEee---------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCcc
Q 007199          119 SSSAEEYI--RRMP------YISKD-GGVTLGAM---------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHV  180 (613)
Q Consensus       119 ~~~~~~~v--~~sP------~~~~d-g~v~~Gs~---------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~  180 (613)
                      ++......  ...|      .++.| +.+|++..         ......||++|++++.++..+....           .
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~-----------g  318 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSD-----------A  318 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEEC-----------E
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcc-----------e
Confidence            55432211  1112      24545 46998653         2456699999999999887654210           0


Q ss_pred             ccCCCcccccccccccccccccEEEEEee--eeEEEEEeCCCCceEEEEEecee
Q 007199          181 VPVDGYEELVESGVGNLKRIRQLVYIMRT--DYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~igr~--d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                      +       .+++.       +..+|+...  +..|..+|..+++++=++.++.+
T Consensus       319 i-------~~s~D-------g~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~  358 (368)
T 1mda_H          319 I-------IAAQD-------GASDNYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             E-------EECCS-------SSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             E-------EECCC-------CCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence            0       11110       124566554  89999999999998877776654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=92.69  E-value=0.73  Score=51.07  Aligned_cols=52  Identities=21%  Similarity=0.119  Sum_probs=35.9

Q ss_pred             CeEEEEecCC------CceeeecccHHHHhhhCceeecCCc-EEEEeec--------ceEEEEECC-CC
Q 007199          103 WELYFHSKRF------GKMKKLSSSAEEYIRRMPYISKDGG-VTLGAMK--------TSVFLVDVK-SG  155 (613)
Q Consensus       103 G~lY~~~~~~------G~l~~~~~~~~~~v~~sP~~~~dg~-v~~Gs~~--------~~~~~vD~~-tG  155 (613)
                      ..||.+|..+      |..+.+.. .......+|.++-||. |++.+.+        ..++.+|+. +|
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSD-DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSC-SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             eEEEEEECCCCccccCCceeEEEe-cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            6899999988      66644430 1122336788998995 5556654        479999999 68

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=92.51  E-value=0.77  Score=50.87  Aligned_cols=111  Identities=13%  Similarity=0.079  Sum_probs=64.5

Q ss_pred             CCCEEEEEecC----------CcEEEEeCCC------CeeeEEee-CCCceeeccccccCCCCCeEEEecCC-------C
Q 007199           47 EPDVALVAALD----------GTIHLVDTKL------GKIRWSFG-TGRPIYSSYQASFNSNASEFYLDVDE-------D  102 (613)
Q Consensus        47 ~~~~v~v~t~d----------G~l~ald~~t------G~~~W~~~-~~~~i~s~~~~~~~~~~~~~~i~~~~-------D  102 (613)
                      .+..+++++.|          ..||.+|..+      |+.. .+. .+......  .....|+..+++...+       .
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~--~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTG--PRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECC--CEECTTSSEEEEEEECTTCCTTTC
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccC--ceECCCCCEEEEEECCCCCCCCCC
Confidence            55677777776          5899999888      6654 232 22222221  1123333344434332       2


Q ss_pred             CeEEEEecC-CC---ceeeecccHHHHhhhCceeecCCcEEE-Eeecc--eEEEEECCCCcEEEEE
Q 007199          103 WELYFHSKR-FG---KMKKLSSSAEEYIRRMPYISKDGGVTL-GAMKT--SVFLVDVKSGRVVDNY  161 (613)
Q Consensus       103 G~lY~~~~~-~G---~l~~~~~~~~~~v~~sP~~~~dg~v~~-Gs~~~--~~~~vD~~tG~~~~~~  161 (613)
                      ..||.+|.. +|   ..+.+...- .....+|..+.||.+|+ +..++  .+|.+|+.+|+.....
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~  281 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC  281 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred             cEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence            589999998 67   343332211 12234677887887665 55555  8999999999876433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	613
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	8e-11
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-10
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-10
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-09
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-09
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-09
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-09
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-09
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-09
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-09
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-09
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-08
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-08
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-08
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-08
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-08
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-08
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-08
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-08
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-08
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-08
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-08
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-08
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	7e-08
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	7e-08
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-08
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-07
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-07
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-07
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-07
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-07
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-07
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-07
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	6e-07
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-07
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-06
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-06
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-06
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-06
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-06
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-06
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-06
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-06
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-06
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	6e-06
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	6e-06
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-05
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-05
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-05
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-05
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-04
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-04

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 8e-11
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYG 534
           F KE+  G  G V          VA+K + +     D  ++E + ++ +  H  +V+ YG
Sbjct: 8   FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAK-VMMNLSHEKLVQLYG 66

Query: 535 VESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           V + Q  +++  E      L + +  +   F+ Q
Sbjct: 67  VCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQ 100

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 477 FNKEIAKGSNGTVVL------EGNYEGRSVAVKRLVKTHHDVA----LKEIQNLIASDQH 526
           F K +  G+ G V+               VAVK L +          + E++ +     H
Sbjct: 41  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH 100

Query: 527 PNIVRWYGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRL 585
            NIV   G  +    +YL  E C    L + +      F E     E    L  E  + +
Sbjct: 101 ENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNV 160

Query: 586 LPVME 590
           L   +
Sbjct: 161 LTFED 165

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 5e-10
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 471 IGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQ-NLIASDQHPNI 529
           I + +V  + I KG  G V   G + G  VAVK           +E +       +H NI
Sbjct: 1   IARTIVLQESIGKGRFGEVWR-GKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENI 59

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAK 571
           + +   ++  +  +  L   +       Y   GS  + LN  
Sbjct: 60  LGFIAADNKDNGTWTQLWLVSD------YHEHGSLFDYLNRY 95

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVA--LKEIQNLIASDQHPNIVRWYG 534
           F +EI  G  G V L        VA+K + +        ++E + ++    HP +V+ YG
Sbjct: 9   FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAE-VMMKLSHPKLVQLYG 67

Query: 535 VESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           V  +Q  + L  E      L+D +    G F  +
Sbjct: 68  VCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAE 101

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV------ALKEIQNLIASDQHPNIVR 531
           +EI  GS G V           VA+K++  +           +KE++  +   +HPN ++
Sbjct: 21  REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVR-FLQKLRHPNTIQ 79

Query: 532 WYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           + G    +   +L +E C  S +DL+ V     +E 
Sbjct: 80  YRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEV 115

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 473 KLVVFNKEIAKGSNGTV---VLEGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQH 526
            L++ + E+  G+ G+V   V     +   VA+K L +       +E+     ++    +
Sbjct: 9   NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDN 68

Query: 527 PNIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           P IVR  GV   +    L +E      L+  +          
Sbjct: 69  PYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEIPVS 109

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 4e-09
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 477 FNKEIAKGSNGTVVL------EGNYEGRSVAVKRLVKTHH----DVALKEIQNLIASDQH 526
           F K +  G+ G VV         +    +VAVK L  + H    +  + E++ L     H
Sbjct: 27  FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH 86

Query: 527 PNIVRWYGVESDQDFVYLSLERCTC-SLNDLIY 558
            NIV   G  +      +  E C    L + + 
Sbjct: 87  MNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 119

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 55.9 bits (134), Expect = 6e-09
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYG 534
           +E+  G+ G V        G + A K ++  H    +   KEIQ + +  +HP +V  + 
Sbjct: 32  EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTM-SVLRHPTLVNLHD 90

Query: 535 VESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
              D + + +  E  +   L + +        E 
Sbjct: 91  AFEDDNEMVMIYEFMSGGELFEKVADEHNKMSED 124

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 55.3 bits (132), Expect = 7e-09
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 479 KEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRWY 533
           ++I +G+ G V    N  G + A+K++     D       ++EI  ++   +H NIV+ Y
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREIS-ILKELKHSNIVKLY 66

Query: 534 GVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
            V   +  + L  E     L  L+ V  G  E  
Sbjct: 67  DVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESV 100

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 7e-09
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVE 536
             + I KG  G V+L G+Y G  VAVK +       A     +++   +H N+V+  GV 
Sbjct: 11  LLQTIGKGEFGDVML-GDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVI 69

Query: 537 SDQD-FVYLSLERCTC-SLNDLIY 558
            ++   +Y+  E     SL D + 
Sbjct: 70  VEEKGGLYIVTEYMAKGSLVDYLR 93

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (132), Expect = 7e-09
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 477 FNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNIVRW 532
           F   +  G+   V+L E     + VA+K + K   +     ++N   ++   +HPNIV  
Sbjct: 13  FRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVAL 72

Query: 533 YGVESDQDFVYLSLERCTC-SLNDLIY 558
             +      +YL ++  +   L D I 
Sbjct: 73  DDIYESGGHLYLIMQLVSGGELFDRIV 99

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 470 RIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRL-VKTHHDVALKEIQNLIASDQHP 527
           R+G      ++I  GS G + L      G  VA+K   VKT H     E +         
Sbjct: 4   RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGV 63

Query: 528 NIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
            I       ++ D+  + +E    SL DL    S  F  +
Sbjct: 64  GIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLK 103

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 477 FNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIV 530
           F K + +GS  TVVL       R  A+K L K H         +   +++++   HP  V
Sbjct: 12  FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFV 71

Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           + Y    D + +Y  L               GSF+E 
Sbjct: 72  KLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDET 108

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 1e-08
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVES 537
           +++ +G    V           V VK L         +EI+ L      PNI+    +  
Sbjct: 41  RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVK 100

Query: 538 DQDFVYLSLERCTCSLNDLIYVLSGSFEEQL 568
           D      +L     +  D   +     +  +
Sbjct: 101 DPVSRTPALVFEHVNNTDFKQLYQTLTDYDI 131

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNIVRWYG 534
            E+  G+ G V        G  +A K +          +I     ++     P IV +YG
Sbjct: 12  SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYG 71

Query: 535 VESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQL 568
                  + + +E       D +   +G   EQ+
Sbjct: 72  AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQI 105

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNIVRWYG 534
           + + +G+ G V L        +VAVK +         + I+    +     H N+V++YG
Sbjct: 11  QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 70

Query: 535 VESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
              + +  YL LE C+               E 
Sbjct: 71  HRREGNIQYLFLEYCSGGELFDRIEPDIGMPEP 103

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 476 VFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHH------DVALKEIQNLIASDQHPN 528
           + +K + KGS G V L E     +  A+K L K         +  + E + L  + +HP 
Sbjct: 5   ILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF 64

Query: 529 IVRWYGVESDQDFVYLSLERCTC-SLNDLI 557
           +   +     ++ ++  +E      L   I
Sbjct: 65  LTHMFCTFQTKENLFFVMEYLNGGDLMYHI 94

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 473 KLVVFNKEIAKGSNGTV---VLEGNYEGRSVAVKRLVKTHHDVALK-----EIQNLIASD 524
            L + +KE+  G+ GTV     +     ++VAVK L    +D ALK     E   ++   
Sbjct: 7   LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEAN-VMQQL 65

Query: 525 QHPNIVRWYGVESDQDFVYLSLERCTC-SLNDLIY 558
            +P IVR  G+   + +  L +E      LN  + 
Sbjct: 66  DNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQ 99

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYG 534
           ++I +G++GTV        G+ VA++++        ++ + EI  ++  +++PNIV +  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEIL-VMRENKNPNIVNYLD 84

Query: 535 VESDQDFVYLSLERCTC-SLNDLIY 558
                D +++ +E     SL D++ 
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVT 109

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYG 534
           +E+  G+ G V        GR    K +   +         EI  ++    HP ++  + 
Sbjct: 35  EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEIS-IMNQLHHPKLINLHD 93

Query: 535 VESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
              D+  + L LE  +   L D I        E 
Sbjct: 94  AFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEA 127

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH--HDVALKEIQNLIASDQHPNIVRWYG 534
             + +  G  G V +        VAVK L +     D  L E   L+   QH  +VR Y 
Sbjct: 17  LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEAN-LMKQLQHQRLVRLYA 75

Query: 535 VESDQDFVYLSLERC-TCSLNDLIY 558
           V + +  +Y+  E     SL D + 
Sbjct: 76  VVTQEP-IYIITEYMENGSLVDFLK 99

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 476 VFNKEIAKGSNGTVVL--------EGNYEGRSVAVKRLVKTHHDVALK----EIQNLIAS 523
           V  K + +G+ G VVL        +       VAVK L     +  L     E++ +   
Sbjct: 16  VLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMI 75

Query: 524 DQHPNIVRWYGVESDQDFVYLSLERCT-CSLNDLIYVLSG-SFEEQLNAKEQDSNLLNEV 581
            +H NI+   G  +    +Y+ +E  +  +L + +        E   N        L+  
Sbjct: 76  GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSK 135

Query: 582 RIR 584
            + 
Sbjct: 136 DLV 138

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV---ALKEIQNLIASDQHPNIVRWYG 534
            E+  G+ G V   +        A K +     +     + EI  L AS  HPNIV+   
Sbjct: 18  GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL-ASCDHPNIVKLLD 76

Query: 535 VESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
               ++ +++ +E C   +++ ++  L     E 
Sbjct: 77  AFYYENNLWILIEFCAGGAVDAVMLELERPLTES 110

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 471 IGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNI 529
           I    V ++ +  G NG V+           A+K L       A +E++    + Q P+I
Sbjct: 10  IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPK--ARREVELHWRASQCPHI 67

Query: 530 VRWYGV----ESDQDFVYLSLERCTC-SLNDLI 557
           VR   V     + +  + + +E      L   I
Sbjct: 68  VRIVDVYENLYAGRKCLLIVMECLDGGELFSRI 100

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 477 FNKEIAKGSNGTVVL-----EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPN 528
             K I  G  G V           +   VA+K L   + +    +      ++    H N
Sbjct: 11  RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN 70

Query: 529 IVRWYGVESDQDFVYLSLERCTCSLNDLIY 558
           I+R  GV S    + +  E       D   
Sbjct: 71  IIRLEGVISKYKPMMIITEYMENGALDKFL 100

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 477 FNKEIAKGSNGTVVL----EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNI 529
             + I +G  G V             +VA+K       D   ++       +    HP+I
Sbjct: 11  LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 70

Query: 530 VRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           V+  GV ++ + V++ +E CT   L   + V   S +  
Sbjct: 71  VKLIGVITE-NPVWIIMELCTLGELRSFLQVRKYSLDLA 108

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 475 VVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVA--LKEIQNLIASDQHPNIVR 531
           +    ++  G  G V          +VAVK L +   +V   LKE   ++   +HPN+V+
Sbjct: 19  ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAA-VMKEIKHPNLVQ 77

Query: 532 WYGVESDQDFVYLSLERCTCSLND 555
             GV + +   Y+  E  T     
Sbjct: 78  LLGVCTREPPFYIITEFMTYGNLL 101

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 7e-08
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRW 532
           ++I +G+ G V        G  VA+K++            A++EI  L+    HPNIV+ 
Sbjct: 8   EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNHPNIVKL 66

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIY 558
             V   ++ +YL  E     L   + 
Sbjct: 67  LDVIHTENKLYLVFEFLHQDLKKFMD 92

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 9e-08
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH--------HDVALKEIQNLIASDQHPNI 529
             + +G   TV         + VA+K++   H        +  AL+EI+ L+    HPNI
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIK-LLQELSHPNI 62

Query: 530 VRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           +        +  + L  +     L  +I   S      
Sbjct: 63  IGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPS 100

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 475 VVFNKEIAKGSNGTVVLEGNYEGR---SVAVKRLVKTHHD-VALKEIQN---LIASDQHP 527
           +   + I  GS GTV     Y+G+    VAVK L  T      L+  +N   ++   +H 
Sbjct: 10  ITVGQRIGSGSFGTV-----YKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 64

Query: 528 NIVRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQ 567
           NI+ + G       + +  + C   SL   ++++   FE  
Sbjct: 65  NILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETKFEMI 104

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 477 FNKEIAKGSNGTV---VLEGNYEGRSVAVKRLVKTHHDVALK----EIQNLIASDQHPNI 529
           F   I +G+ G V    ++ +      A+KR+ +       +    E++ L     HPNI
Sbjct: 14  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 73

Query: 530 VRWYGVESDQDFVYLSLERCT-CSLNDLIY 558
           +   G    + ++YL++E     +L D + 
Sbjct: 74  INLLGACEHRGYLYLAIEYAPHGNLLDFLR 103

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVAL--KEIQNLIASDQHPNIVRWYGV 535
           +++ +G  G V         ++   K +     D  L  KEI  L    +H NI+  +  
Sbjct: 11  EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISIL-NIARHRNILHLHES 69

Query: 536 ESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQ 567
               + + +  E  +   + + I   +    E+
Sbjct: 70  FESMEELVMIFEFISGLDIFERINTSAFELNER 102

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 476 VFNKEIAKGSNGTVVL------EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQH 526
             ++E+ +GS G V          +     VA+K + +        E  N   ++     
Sbjct: 23  TMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNC 82

Query: 527 PNIVRWYGVESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQD 574
            ++VR  GV S      + +E  T   L   +  L  +           
Sbjct: 83  HHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 131

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 477 FNKEIAKGSNGTVVL----EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNI 529
             + I  G  G V              VA+K L   + +   ++  +   ++    HPN+
Sbjct: 30  IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 89

Query: 530 VRWYGVESDQDFVYLSLERC 549
           +   GV +    V +  E  
Sbjct: 90  IHLEGVVTKSTPVMIITEFM 109

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 477 FNKEIAKGSNGTV----VLEGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNI 529
           FN+ I +G  G V    +L+ + +    AVK L +      + +      ++    HPN+
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 90

Query: 530 VRWYGVESDQDF-VYLSLERC-TCSLNDLIYVLSGSFEEQ 567
           +   G+    +    + L       L + I   + +   +
Sbjct: 91  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVK 130

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVA---------LKEIQNLIASDQHPN 528
           +E+  G    V        G   A K + K     +          +E+  L    QHPN
Sbjct: 16  EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL-KEIQHPN 74

Query: 529 IVRWYGVESDQDFVYLSLERCTC 551
           ++  + V  ++  V L LE    
Sbjct: 75  VITLHEVYENKTDVILILELVAG 97

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 477 FNKEIAKGSNGTVVL------EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHP 527
           + ++I +G+ G V                VAVK L +        + Q    L+A   +P
Sbjct: 17  YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNP 76

Query: 528 NIVRWYGVESDQDFVYLSLERCTC-SLNDLIY 558
           NIV+  GV +    + L  E      LN+ + 
Sbjct: 77  NIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR 108

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD------VALKEIQNLIASDQHPNIVR 531
           + + KG  G V L         +A+K L K   +         +E++ + +  +HPNI+R
Sbjct: 12  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE-IQSHLRHPNILR 70

Query: 532 WYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
            YG   D   VYL LE                F+EQ
Sbjct: 71  LYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ 106

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 6e-07
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIASDQHPNIVRW 532
           ++I +G+ GTV   +       VA+KR+     D      AL+EI  L    +H NIVR 
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL-KELKHKNIVRL 66

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           + V      + L  E C   L       +G  + +
Sbjct: 67  HDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPE 101

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH------HDVALKEIQ--NLIASDQHPNI 529
           + I +G  G V        G+  A+K L K          +AL E    +L+++   P I
Sbjct: 10  RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI 69

Query: 530 VRWYGVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQL 568
           V         D +   L+      L+  +       E  +
Sbjct: 70  VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADM 109

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVK---------THHDVALKEIQNLIA-SDQHP 527
             +  G  G+V       +   VA+K + K          +      E+  L   S    
Sbjct: 10  PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFS 69

Query: 528 NIVRWYGVESDQDFVYLSLERCTCSLNDLIYVLS-GSFEEQL 568
            ++R        D   L LER     +   ++   G+ +E+L
Sbjct: 70  GVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEEL 111

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVR 531
           + +  G    V L       R VAVK L          +    +E QN  A+  HP IV 
Sbjct: 13  EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNA-AALNHPAIVA 71

Query: 532 WYGVESDQD----FVYLSLERCTCSLNDLIYVLSGSFEEQ 567
            Y     +       Y+ +E         I    G    +
Sbjct: 72  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPK 111

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 479 KEIAKGSNGTVVL-----EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNIV 530
           K +  G+ GTV       EG      VA+K L +     A KEI +   ++AS  +P++ 
Sbjct: 15  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 74

Query: 531 RWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           R  G+        ++       L D +     +   Q
Sbjct: 75  RLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQ 111

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQN---LIASDQHPNIVRWYG 534
             I +G+ G V     N     VA+K++    H    +       ++   +H NI+    
Sbjct: 14  SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGIND 73

Query: 535 VESDQDF-----VYLSLERCTCSLNDLI 557
           +           VYL        L  L+
Sbjct: 74  IIRAPTIEQMKDVYLVTHLMGADLYKLL 101

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 472 GKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVA-----LKEIQNLIASDQ 525
           G+ + F+ EI +GS  TV           VA   L       +      +E + ++   Q
Sbjct: 8   GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAE-MLKGLQ 66

Query: 526 HPNIVRWYGV----ESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQL 568
           HPNIVR+Y         +  + L  E  T              + ++
Sbjct: 67  HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKV 113

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 471 IGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALK-EIQNLIASDQHPN 528
           +G      + I +GS G +         + VA+K   +      L+ E +          
Sbjct: 3   VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTG 62

Query: 529 IVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
           I   Y    +     L ++    SL DL+ +    F  +
Sbjct: 63  IPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVK 101

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 479 KEIAKGSNGTVVL----EGNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPN 528
           +++  GS G V        + +  SVAVK L           D  ++E+   + S  H N
Sbjct: 14  EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVN-AMHSLDHRN 72

Query: 529 IVRWYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEE 566
           ++R YGV        ++      SL D +    G F  
Sbjct: 73  LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLL 110

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVR 531
           + +  GS G V L    + GR  A+K L K         +    E   +++   HP I+R
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERL-MLSIVTHPFIIR 68

Query: 532 WYGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
            +G   D   +++ ++         +   S  F   
Sbjct: 69  MWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNP 104

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 14/93 (15%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV------------ALKEIQNLIASDQ 525
           + + +G +  V         +  AVK +  T                 LKE+  L     
Sbjct: 9   EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSG 68

Query: 526 HPNIVRWYGVESDQDFVYLSLERCTC-SLNDLI 557
           HPNI++         F +L  +      L D +
Sbjct: 69  HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL 101

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 477 FNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDV--ALKEIQNLIASDQHPNIVRWYG 534
              ++ +G  G V +        VA+K L          L+E Q ++   +H  +V+ Y 
Sbjct: 21  LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQ-VMKKLRHEKLVQLYA 79

Query: 535 VESDQDFVYLSLERCTCSLNDLIY 558
           V S++  +Y+  E  +        
Sbjct: 80  VVSEEP-IYIVTEYMSKGSLLDFL 102

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRW 532
             I  GS G         +G+ +  K L           + + E+  L+   +HPNIVR+
Sbjct: 10  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVN-LLRELKHPNIVRY 68

Query: 533 YGVESDQ--DFVYLSLERCTC-SLNDLI 557
           Y    D+    +Y+ +E C    L  +I
Sbjct: 69  YDRIIDRTNTTLYIVMEYCEGGDLASVI 96

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 479 KEIAKGSNGTVVL----EGNYEGRSVAVKRLVKTH-------HDVALKEIQNLIASDQHP 527
           K +  G+ G V L     G+  G+  A+K L K          +    E Q L    Q P
Sbjct: 30  KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 89

Query: 528 NIVRWYGVESDQDFVYLSLE-RCTCSLNDLIY 558
            +V  +     +  ++L L+      L   + 
Sbjct: 90  FLVTLHYAFQTETKLHLILDYINGGELFTHLS 121

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 477 FNKEIAKGSNGTVVL------EGNYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQH 526
             K + +G+ G V+       +     R+VAVK L +      H   + E++ LI    H
Sbjct: 17  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 76

Query: 527 PNIVRWYGV-ESDQDFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKE 572
            N+V   G        + + +E C   +L+  +      F     A E
Sbjct: 77  LNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPE 124

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGV-- 535
           K I  GS G V   +    G  VA+K++++       +E+Q ++    H NIVR      
Sbjct: 26  KVIGNGSFGVVYQAKLCDSGELVAIKKVLQ-DKRFKNRELQ-IMRKLDHCNIVRLRYFFY 83

Query: 536 --ESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQ 567
                +D VYL+L                S  +Q
Sbjct: 84  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQ 117

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 479 KEIAKGSNGTVVL--EGNYEGRSVAVKRLVKTHHD-----VALKEIQNL--IASDQHPNI 529
            EI +G+ G V    +    GR VA+KR+     +       ++E+  L  + + +HPN+
Sbjct: 13  AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV 72

Query: 530 VRWYGVESDQDF-----VYLSLERCTCSLNDLIYVLSG 562
           VR + V +         + L  E     L   +  +  
Sbjct: 73  VRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPE 110

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 17/114 (14%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIASDQHPNIVRW 532
           + +  G+ G V        G  VA+K+L +          A +E++ L+   +H N++  
Sbjct: 24  QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELR-LLKHMRHENVIGL 82

Query: 533 YGVESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLL 586
             V +  + +    +        L+    G+   +L   E+    L E RI+ L
Sbjct: 83  LDVFTPDETLDDFTDFY------LVMPFMGTDLGKLMKHEK----LGEDRIQFL 126

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 469 RRIGKLVVFNKEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIA 522
             + K      +I +G+ G V        G+ VA+K+++  +        AL+EI+ L  
Sbjct: 7   DEVSKYEKL-AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL-Q 64

Query: 523 SDQHPNIVRWYGV--------ESDQDFVYLSLERCTCSLNDLIYVLSGSF 564
             +H N+V    +           +  +YL  + C   L  L+  +   F
Sbjct: 65  LLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKF 114

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVR 531
           K + KG+ G V+L      GR  A+K L K            + E + L  + +HP +  
Sbjct: 11  KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL-QNTRHPFLTA 69

Query: 532 WYGVESDQDFVYLSLERCTC 551
                   D +   +E    
Sbjct: 70  LKYAFQTHDRLCFVMEYANG 89

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHDV-----ALKEIQNLIASDQHPNIVRW 532
             +  G+ G+V        G  VAVK+L +    +       +E++ L+   +H N++  
Sbjct: 24  SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELR-LLKHMKHENVIGL 82

Query: 533 YGVESDQDFVY 543
             V +    + 
Sbjct: 83  LDVFTPARSLE 93

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 479 KEIAKGSNGTVVL-EGNYEGRSVAVKRLVKTHHD-----VALKEIQNLIASDQHPNIVRW 532
           K I  G+ G V         R+VA+K+L +   +      A +E+  L+    H NI+  
Sbjct: 23  KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELV-LMKCVNHKNIISL 81

Query: 533 YGV----ESDQDFVYLSLERCTCSLNDLIYVLSGSFEEQL 568
             V    ++ ++F  + L       N    +      E++
Sbjct: 82  LNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERM 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	613
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.85
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.85
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.85
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.85
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.84
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.84
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.84
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.84
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.84
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.83
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.83
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.83
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.83
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.83
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.82
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.82
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.82
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.82
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.82
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.82
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.82
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.82
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.81
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.81
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.81
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.8
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.8
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.79
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.79
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.79
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.79
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.78
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.78
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.78
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.78
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.78
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.77
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.77
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.77
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.76
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.76
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.76
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.76
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.75
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.75
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.75
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.75
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.75
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.75
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.74
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.74
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.74
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.74
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.74
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.73
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.73
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.71
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.71
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	99.51
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	99.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	99.42
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.41
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.39
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	99.3
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	99.22
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	99.13
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.13
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.24
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.86
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.72
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.71
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.58
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.57
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.49
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.44
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.44
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.42
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.25
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.23
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.19
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.14
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.1
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.02
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.97
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.69
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.53
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.49
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.28
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.24
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.11
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.1
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.1
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	95.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.35
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.33
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.03
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	93.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	93.84
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	93.53
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	93.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	92.93
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.68
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.48
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	90.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	89.72
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	88.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	85.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	84.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	83.77

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.9e-21  Score=195.22  Aligned_cols=125  Identities=19%  Similarity=0.173  Sum_probs=104.9

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---------HHDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.++|++.+.||+|+||+||+|. ..+|+.||||++.+.         ..+.+.+|+++|.++ +|||||+++++|.+.+
T Consensus         8 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~   86 (293)
T d1jksa_           8 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI-QHPNVITLHEVYENKT   86 (293)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSS
T ss_pred             cccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECC
Confidence            45669999999999999999985 678999999999752         245799999999888 9999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      .+|||||||+ |+|.++|....      .+++..+..++.   .||.|||+.+|+|||||    ++..++
T Consensus        87 ~~~iv~E~~~gg~L~~~i~~~~------~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~  150 (293)
T d1jksa_          87 DVILILELVAGGELFDFLAEKE------SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRN  150 (293)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSS
T ss_pred             EEEEEEEcCCCccccchhcccc------ccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCC
Confidence            9999999999 69999998643      456666555544   89999999999988887    444444

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=196.75  Aligned_cols=117  Identities=23%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|++.+.||+|+||+||+|. ..+|+.||||++...    ..+.+.+|+++|.++ +|||||++++++.+.+..|||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML-NHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhC-CCCCEeeEeeeeccCceeEEEEe
Confidence            359999999999999999984 678999999999753    234688999999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.++|+..      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        84 y~~gg~L~~~l~~~------~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiK  130 (271)
T d1nvra_          84 YCSGGELFDRIEPD------IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK  130 (271)
T ss_dssp             CCTTEEGGGGSBTT------TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             ccCCCcHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHcCCccCccc
Confidence            999 6999998642      3466666655554   99999999999887776

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.3e-21  Score=200.16  Aligned_cols=120  Identities=22%  Similarity=0.259  Sum_probs=98.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .+.+.|++.++||+|+||+||+|. ..+|+.||||++.+.    ..+.+.+|+++|.++ +|||||++++++.+.+.+||
T Consensus         6 di~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~l~~~~~~~~~~~l   84 (307)
T d1a06a_           6 DIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI-KHPNIVALDDIYESGGHLYL   84 (307)
T ss_dssp             CGGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTC-CCTTBCCEEEEEECSSEEEE
T ss_pred             CCccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEE
Confidence            455669999999999999999984 678999999999863    234678999999887 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.++|...      ..+++..+..++.   .||.|||+.+|+|||||
T Consensus        85 vmE~~~gg~L~~~l~~~------~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiK  134 (307)
T d1a06a_          85 IMQLVSGGELFDRIVEK------GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLK  134 (307)
T ss_dssp             EECCCCSCBHHHHHHTC------SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEeccCCCcHHHhhhcc------cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEec
Confidence            999999 6999999743      3566666665555   89999999999887775

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.7e-21  Score=191.59  Aligned_cols=116  Identities=23%  Similarity=0.244  Sum_probs=98.9

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||+||+|. ..+++.||+|++.+      ...+.+.+|+++|.++ +|||||++++++.+++..||||
T Consensus         7 dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           7 DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL-RHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             HeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhc-CCCCCCeEEEEEEECCEEEEEE
Confidence            48999999999999999984 57899999999975      2345788999999887 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.+++....      .+++..+..++.   .||.|||+++|+|||||
T Consensus        86 Ey~~~g~L~~~l~~~~------~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiK  133 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS------KFDEQRTATYITELANALSYCHSKRVIHRDIK  133 (263)
T ss_dssp             ECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             eecCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHCCeeeeeec
Confidence            9999 69999998643      456666555544   99999999999887765

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.8e-21  Score=194.84  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=102.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +.|++.+.||+|+||+||+|. ..+|+.||||+++..   ..+.+.+|+++|.++ +|||||++++++.+.+.+||||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC-DHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEeeCCeEEEEEec
Confidence            458999999999999999984 678999999999763   345789999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+ |+|.+++....     ..+++..+..++.   .||.|||+++|+|||||    |+..|+
T Consensus        91 ~~~g~L~~~~~~~~-----~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~  147 (288)
T d2jfla1          91 CAGGAVDAVMLELE-----RPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDG  147 (288)
T ss_dssp             CTTEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS
T ss_pred             CCCCcHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCC
Confidence            99 69999987642     3456666555544   99999999999877776    454444

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2e-21  Score=196.91  Aligned_cols=119  Identities=21%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~  549 (613)
                      +.|++.+.||+|+||+||+|. ..+|+.||||+++.  ...+++.+|+++|.++ +|||||+++++|.+.+..+||||||
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~iv~E~~   95 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFM   95 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhC-CCCCEecCCccEeeCCeeEEEeecc
Confidence            458999999999999999985 56799999999986  3456899999999888 9999999999999999999999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      + |+|.+++...    ....+++..+..++.   .||+|||+++|+|||||
T Consensus        96 ~~g~l~~~l~~~----~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlK  142 (287)
T d1opja_          96 TYGNLLDYLREC----NRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA  142 (287)
T ss_dssp             TTCBHHHHHHHS----CTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             cCcchHHHhhhc----cccchHHHHHHHHHHHHHHHHHHHHHCCcccCccc
Confidence            9 7999999864    334566666555443   89999999998877765

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.4e-21  Score=192.28  Aligned_cols=123  Identities=21%  Similarity=0.164  Sum_probs=102.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.+.||+|+||+||+|. ..+|+.||||++.+      ...+.+.+|+++|.++ +|||||++++++.+.+.+|||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-DHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC-CSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHc-CCCCeeEEEEEEEECCEEEEE
Confidence            459999999999999999985 67899999999975      2345789999999888 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||+ |+|.+++...+      .+++..+..++.   .||+|||+.+|+|||||    +++.++
T Consensus        87 mEy~~gg~L~~~~~~~~------~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~  145 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKIG------SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM  145 (288)
T ss_dssp             ECCCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS
T ss_pred             EEccCCCCHHHhhhccC------CCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCc
Confidence            99999 69999998643      456665555444   89999999999888776    455444

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.8e-21  Score=194.81  Aligned_cols=120  Identities=15%  Similarity=0.073  Sum_probs=101.7

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchH--HHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHD--VALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~--~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.++|.+.+.||+|+||+||+|. ..+|+.||||.++....+  .+.+|+++|..+ +|||||++++++.+.+.+|||||
T Consensus         3 ~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l-~HpnIv~~~~~~~~~~~~~lvmE   81 (321)
T d1tkia_           3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA-RHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHS-CCTTBCCEEEEEEETTEEEEEEC
T ss_pred             CccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhC-CCCCCCeEEEEEEECCEEEEEEe
Confidence            44569999999999999999984 678999999999875443  678999999887 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.++|+..     ...+++..+..++.   .||.|||+.+|+|||||
T Consensus        82 ~~~gg~L~~~i~~~-----~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlK  129 (321)
T d1tkia_          82 FISGLDIFERINTS-----AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIR  129 (321)
T ss_dssp             CCCCCBHHHHHTSS-----SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cCCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            999 5999999742     23466766665554   99999999999887776

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.5e-21  Score=191.76  Aligned_cols=118  Identities=24%  Similarity=0.255  Sum_probs=99.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|++.+.||+|+||+||+|...+++.||||+++.  ...++|.+|+++|.++ +|||||+++++|...+..+||||||+
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhc-CCCCcccccceeccCCceEEEEEecC
Confidence            34899999999999999998877888999999986  3456899999999888 99999999999999999999999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                       |+|.+++...     ...++.....+++   +.||.|||+.+|+|||||
T Consensus        84 ~g~L~~~l~~~-----~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlK  128 (263)
T d1sm2a_          84 HGCLSDYLRTQ-----RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA  128 (263)
T ss_dssp             TCBHHHHHHTT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCS
T ss_pred             CCcHHHHhhcc-----ccCCCHHHHHHHHHHHHHHHHhhhccceeecccc
Confidence             7999999863     2344555444433   389999999998776665

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.6e-21  Score=193.48  Aligned_cols=122  Identities=21%  Similarity=0.250  Sum_probs=102.1

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec---cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK---THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~---~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      ++|+..+.||+|+||+||+|. ..+|+.||||++..   ...+.+.+|+++|.++ +|||||++++++.+.+.+||||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN-KNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhC-CCCCEeeEeEEEEECCEEEEEEEe
Confidence            358889999999999999984 68899999999975   3456799999999887 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+ |+|.+++...       .+++..+..++.   .||.|||+++|+|||||    |++.++
T Consensus        99 ~~gg~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~  153 (293)
T d1yhwa1          99 LAGGSLTDVVTET-------CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG  153 (293)
T ss_dssp             CTTCBHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC
T ss_pred             cCCCcHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCC
Confidence            99 6999988642       356666555554   99999999999887777    555554

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.83  E-value=7.1e-21  Score=198.28  Aligned_cols=119  Identities=18%  Similarity=0.091  Sum_probs=100.3

Q ss_pred             CceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          472 GKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       472 ~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .+.|++.+.||+|+||+||+|. ..+|+.||||+++...   .+.+.+|+++|.++ +|||||+++++|.+++.+|||||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l-~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL-HHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC-CSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEE
Confidence            3559999999999999999985 6789999999998643   34688999999777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.+++...     ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       107 ~~~gg~L~~~~~~~-----~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiK  154 (352)
T d1koba_         107 FLSGGELFDRIAAE-----DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIK  154 (352)
T ss_dssp             CCCCCBHHHHTTCT-----TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cCCCChHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccc
Confidence            999 6999887642     33467776666554   99999999999887775

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-20  Score=191.97  Aligned_cols=124  Identities=21%  Similarity=0.198  Sum_probs=103.4

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      .|+..+.||+|+||+||+|. ..+|+.||||+++..     ..+.+.+|+++|.++ +|||||++++++.+.+.+|||||
T Consensus         3 ~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l-~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC-CCCcEEEeccccccccceeEEEe
Confidence            48999999999999999984 688999999999752     345789999999777 99999999999999999999999


Q ss_pred             CCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          548 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       548 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||.|++.+++...    ....+++..+.+++.   .||.|||+.+|+|||||       |+|||+
T Consensus        82 ~~~~~~~~~~~~~----~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiK-------peNIl~  135 (298)
T d1gz8a_          82 FLHQDLKKFMDAS----ALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK-------PQNLLI  135 (298)
T ss_dssp             CCSEEHHHHHHHT----TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-------GGGEEE
T ss_pred             ecCCchhhhhhhh----cccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccC-------chheee
Confidence            9998877777654    344577777777765   89999999999887766       666665

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=189.32  Aligned_cols=124  Identities=21%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|++.+.||+|+||+||+|...+++.||||+++.  ...+.|.+|+++|.++ +|||||++++++. .+..+||||||+
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~g~~~-~~~~~iv~Ey~~   90 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL-QHQRLVRLYAVVT-QEPIYIITEYME   90 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhC-CCCCEeEEEeeec-cCCeEEEEEeCC
Confidence            45999999999999999998877788999999986  3456899999999888 9999999999875 456799999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                       |+|.+++...    ....++.....+++.   .||.|||+.+|+|||||    +++.++
T Consensus        91 ~g~L~~~~~~~----~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~  146 (272)
T d1qpca_          91 NGSLVDFLKTP----SGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL  146 (272)
T ss_dssp             TCBHHHHTTSH----HHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS
T ss_pred             CCcHHHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeeccc
Confidence             7999987653    223456655555544   89999999998877766    454444

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=1.5e-20  Score=189.13  Aligned_cols=126  Identities=19%  Similarity=0.191  Sum_probs=101.2

Q ss_pred             ccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC--
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQD--  540 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~--  540 (613)
                      .+.++|++.+.||+|+||+||+|. ..+|+.||||+++..      ..+.+.+|+++|.++ +|||||++++++...+  
T Consensus         4 ~l~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~-~hpniv~~~~~~~~~~~~   82 (277)
T d1o6ya_           4 HLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL-NHPAIVAVYDTGEAETPA   82 (277)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEEEECSS
T ss_pred             CccceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhc-CCCCCCcccceeeeccCC
Confidence            345669999999999999999984 678999999999752      223688999999777 9999999999998754  


Q ss_pred             --EEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          541 --FVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       541 --~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                        ..|||||||+ |+|.+++...+      .+++..+..++.   .||.|||+.+|+|||||       |+||||
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~~~------~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiK-------P~NIll  144 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSHQNGIIHRDVK-------PANIMI  144 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-------GGGEEE
T ss_pred             CceEEEEEECCCCCEehhhhcccC------CCCHHHHHHHHHHHHHHHHHHHhCCccCcccc-------Cccccc
Confidence              4899999999 59999988643      455555555444   89999999999777665       555555

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.9e-21  Score=195.61  Aligned_cols=117  Identities=17%  Similarity=0.155  Sum_probs=97.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|+..+.||+|+||+||+|. ..+|+.||+|+++..    ..+.+.+|+++|.++ +|||||+++++|.+.+.+|||||
T Consensus         6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGC-CCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEE
Confidence            459999999999999999985 678999999999752    235789999999777 99999999999999999999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlK  596 (613)
                      ||+ |+|.+++....      .+++..+..++.   .||.|||+ ++|+|||||
T Consensus        85 y~~gg~L~~~l~~~~------~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiK  132 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG------RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK  132 (322)
T ss_dssp             CCTTEEHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCS
T ss_pred             cCCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHhCCEEccccC
Confidence            999 69999998643      355555555443   99999997 488777766

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.7e-20  Score=192.60  Aligned_cols=122  Identities=20%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||+||+|. ..+|+.||||++++.      ..+.+.+|+.+|.++ +||||+++++++.+.+.+|+||
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l-~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT-RHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhC-CCCCEEEEEeeeccccccccce
Confidence            49999999999999999984 688999999999852      345789999999777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++...+      .+++..+..++.   .||.|||+++|+|||||    |+..+|
T Consensus        85 ey~~gg~L~~~~~~~~------~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g  142 (337)
T d1o6la_          85 EYANGGELFFHLSRER------VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG  142 (337)
T ss_dssp             ECCTTCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             eccCCCchhhhhhccc------CCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCC
Confidence            9999 69999998653      456665555544   89999999999888777    555555

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.82  E-value=3.1e-20  Score=193.23  Aligned_cols=118  Identities=16%  Similarity=0.173  Sum_probs=100.3

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      ++|++.+.||+|+||+||+|. ..+|+.||||++....   .+.+.+|+++|.++ +|||||++++++.+.+.+||||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL-RHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHT-CCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEEc
Confidence            459999999999999999984 6789999999998643   34788999999888 999999999999999999999999


Q ss_pred             CC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+ |+|.+++...     ...+++..+..++.   .||.|||+.+|+|||||
T Consensus       105 ~~gg~L~~~l~~~-----~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiK  151 (350)
T d1koaa2         105 MSGGELFEKVADE-----HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLK  151 (350)
T ss_dssp             CCSCBHHHHHTCT-----TSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             CCCCCHHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeec
Confidence            99 6999999642     23466666665554   99999999999887776

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=189.04  Aligned_cols=121  Identities=21%  Similarity=0.233  Sum_probs=92.9

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe--CCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD--QDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--~~~~~L  544 (613)
                      +.|++.+.||+|+||+||++. ..+|+.||||++...     ..+.+.+|+++|.++ +|||||++++++.+  .+.+||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL-KHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSC-CCTTBCCEEEEEEC----CEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHC-CCCCEeeEEEEEEeCCCCEEEE
Confidence            349999999999999999984 678999999999763     234688999998777 99999999999975  456899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCC-----ceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVM-----ENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~-----iiHrDlK  596 (613)
                      |||||+ |+|.+++.....  ....+++..+..++.   .||.|||+.+     |+|||||
T Consensus        83 vmEy~~~g~L~~~i~~~~~--~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiK  141 (269)
T d2java1          83 VMEYCEGGDLASVITKGTK--ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK  141 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CC
T ss_pred             EEecCCCCcHHHHHHhccc--cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCc
Confidence            999999 699999976431  234577777666655   8999999865     6666555

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-20  Score=185.32  Aligned_cols=116  Identities=22%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~  543 (613)
                      .|++.++||+|+||+||+|. ..+++.||+|.+...     ..+.+.+|+++|.++ +|||||+++++|.+    ...+|
T Consensus        10 y~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~~~~~   88 (270)
T d1t4ha_          10 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL-QHPNIVRFYDSWESTVKGKKCIV   88 (270)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEEESSSCEEEE
T ss_pred             EEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEeeccccCCEEE
Confidence            36788899999999999984 678899999998752     234788999999777 99999999999875    34789


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCC--ceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVM--ENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~--iiHrDlK  596 (613)
                      ||||||+ |+|.++++...      .+++..+..++   +.||.|||+++  |+|||||
T Consensus        89 ivmE~~~~g~L~~~l~~~~------~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiK  141 (270)
T d1t4ha_          89 LVTELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLK  141 (270)
T ss_dssp             EEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCC
T ss_pred             EEEeCCCCCcHHHHHhccc------cccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcC
Confidence            9999999 69999998643      45555554444   38999999988  8777666

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.82  E-value=4.5e-20  Score=185.78  Aligned_cols=118  Identities=19%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------------hHHHHHHHHHHHhcCCCCcceeEEEEEEeC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------------HDVALKEIQNLIASDQHPNIVRWYGVESDQ  539 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~  539 (613)
                      ++|++.+.||+|+||+||+|. ..+|+.||||++++..            .+.+.+|+.+|.++..|||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            459999999999999999984 5789999999997621            125889999999985599999999999999


Q ss_pred             CEEEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +..|||||||+ |+|.++|+..      ..+++.++..++.   .||+|||+++|+|||||
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~------~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlk  137 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEK------VTLSEKETRKIMRALLEVICALHKLNIVHRDLK  137 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH------SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             cceEEEEEcCCCchHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence            99999999999 6999999854      2567777777665   89999999998877766

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-20  Score=186.43  Aligned_cols=117  Identities=20%  Similarity=0.212  Sum_probs=99.5

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec--cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK--THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~--~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~-  550 (613)
                      .|++.+.||+|+||+||+|...+++.||||.++.  ...++|.+|+.++.++ +||||++++++|.+++.+++|||||+ 
T Consensus         5 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l-~HpnIv~~~g~~~~~~~~~iv~Ey~~~   83 (258)
T d1k2pa_           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL-SHEKLVQLYGVCTKQRPIFIITEYMAN   83 (258)
T ss_dssp             CCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTC-CCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred             HCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhc-CCCceeeEEEEEeeCCceEEEEEccCC
Confidence            4788899999999999998777788999999986  3456899999999888 99999999999999999999999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |+|.+++...     ...+.+....+++.   +||.|||+.+|+|||||
T Consensus        84 g~l~~~~~~~-----~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk  127 (258)
T d1k2pa_          84 GCLLNYLREM-----RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA  127 (258)
T ss_dssp             EEHHHHHHSG-----GGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCS
T ss_pred             CcHHHhhhcc-----ccCCcHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence            7999998753     33455555555544   99999999999887776

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.6e-20  Score=189.64  Aligned_cols=117  Identities=17%  Similarity=0.110  Sum_probs=99.1

Q ss_pred             eEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|.+.+.||+|+||+||+| ...+|+.||||++++      ...+.+.+|+.++.+.++|||||++++++.+++.+||||
T Consensus         3 dy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivm   82 (320)
T d1xjda_           3 DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVM   82 (320)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEE
Confidence            4899999999999999998 467899999999975      334567888888776669999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+ |+|.++++...      .+++.++..++.   .||.|||+++|+|||||
T Consensus        83 Ey~~~g~L~~~i~~~~------~~~e~~~~~~~~qi~~al~ylH~~~iiHrDik  130 (320)
T d1xjda_          83 EYLNGGDLMYHIQSCH------KFDLSRATFYAAEIILGLQFLHSKGIVYRDLK  130 (320)
T ss_dssp             ECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred             eecCCCcHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc
Confidence            9999 69999998643      456666665554   89999999999888776

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.6e-20  Score=189.46  Aligned_cols=117  Identities=21%  Similarity=0.233  Sum_probs=96.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|+..+.||+|+||+||+|. ..+|+.||||++....      .+.+.+|+++|.++ +|||||++++++.+.+..|||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~~~~~~~~~~~~~iv   93 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RHPNTIQYRGCYLREHTAWLV   93 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHC-CCCCEeeEEEEEEECCEEEEE
Confidence            349999999999999999984 6789999999997532      23688999999877 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||. |+|..++...      ..+++..+..++.   .||.|||+++|+|||||
T Consensus        94 ~E~~~~g~l~~~~~~~------~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiK  142 (309)
T d1u5ra_          94 MEYCLGSASDLLEVHK------KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK  142 (309)
T ss_dssp             EECCSEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS
T ss_pred             EEecCCCchHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCC
Confidence            99999 5776665532      2456666555554   89999999998777665

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.9e-20  Score=188.48  Aligned_cols=122  Identities=21%  Similarity=0.177  Sum_probs=100.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~  546 (613)
                      .|++.+.||+|+||+||+|. ..+|+.||||++++      ...+.+.+|+.+|.++ +|||||++++++.+.+.+|+||
T Consensus         5 dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           5 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV-THPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC-CBTTBCCEEEEEECSSEEEEEE
T ss_pred             HeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhc-cCcChhheeeeEeeCCeeeeEe
Confidence            38999999999999999985 67899999999975      2345789999998777 9999999999999999999999


Q ss_pred             cCCC-ccHHHHHHHhcCCCccccCCHHHHHH---HHHHHHHHHhcCCceeeccc----eecCCC
Q 007199          547 ERCT-CSLNDLIYVLSGSFEEQLNAKEQDSN---LLNEVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       547 E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||+ |+|.+++....      ...+..+..   .++.|+.|||+++|+|||||    |+..+|
T Consensus        84 E~~~gg~l~~~~~~~~------~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g  141 (316)
T d1fota_          84 DYIEGGELFSLLRKSQ------RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNG  141 (316)
T ss_dssp             CCCCSCBHHHHHHHTS------SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTS
T ss_pred             eecCCccccccccccc------cccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCC
Confidence            9999 59999888643      344444433   34499999999999888777    555554

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.4e-20  Score=189.94  Aligned_cols=118  Identities=21%  Similarity=0.166  Sum_probs=95.2

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCC---cEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEG---RSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g---~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|++.++||+|+||+||+|. ..++   ..||||++...    ..+.|.+|+++|.++ +|||||+++++|...+.++|
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~g~~~~~~~~~i  104 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF-DHPNVIHLEGVVTKSTPVMI  104 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSSCEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC-CCCCCccEEEEEeeCCEEEE
Confidence            458999999999999999985 3333   36899998753    234789999999887 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.+++...     ...+++....+++.   .||.|||+++|+|||||
T Consensus       105 v~Ey~~~g~L~~~~~~~-----~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlK  155 (299)
T d1jpaa_         105 ITEFMENGSLDSFLRQN-----DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLA  155 (299)
T ss_dssp             EEECCTTEEHHHHHHTT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEecCCCcceeeeccc-----cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccc
Confidence            999999 6999998863     23455555544443   99999999999887777

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.2e-20  Score=185.57  Aligned_cols=116  Identities=19%  Similarity=0.161  Sum_probs=92.2

Q ss_pred             eEEEeee-EeecCceEEEEEE---eeCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          474 LVVFNKE-IAKGSNGTVVLEG---NYEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       474 ~~~~~~~-LG~G~fG~Vyk~~---~~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      .+.+.+. ||+|+||+||+|.   ..++..||||+++..    ..+.|.+|+++|.++ +|||||++++++.. +.+|||
T Consensus         9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEES-SSEEEE
T ss_pred             CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhC-CCCCEeeEeeeecc-CeEEEE
Confidence            3777774 9999999999984   344568999999753    334799999999888 99999999999865 568999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.+++...     ...+++..+.+++.   .||.|||+++|+|||||
T Consensus        87 mE~~~~g~L~~~l~~~-----~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlK  136 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGK-----REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLA  136 (285)
T ss_dssp             EECCTTEEHHHHHTTC-----TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EEeCCCCcHHHHhhcc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCc
Confidence            99999 6999998653     23466666665555   99999999998777766

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.6e-20  Score=184.46  Aligned_cols=124  Identities=19%  Similarity=0.173  Sum_probs=100.7

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc--chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT--HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      +.|++.+.||+|+||+||+|...+++.||||+++..  ..+.|.+|+++|.++ +|||||+++++|. .+..++|||||+
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l-~h~nIv~~~g~~~-~~~~~lv~Ey~~   94 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVS-EEPIYIVTEYMS   94 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEEC-SSSCEEEECCCT
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhc-ccCCEeEEEEEEe-cCCeEEEEEecC
Confidence            349999999999999999987777778999999863  446899999999888 9999999999985 456899999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                       |+|..++...    ....++..+...++.   .||.|||..+|+|||||    |++.|+
T Consensus        95 ~g~l~~~~~~~----~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~  150 (285)
T d1fmka3          95 KGSLLDFLKGE----TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENL  150 (285)
T ss_dssp             TCBHHHHHSHH----HHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG
T ss_pred             CCchhhhhhhc----ccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCC
Confidence             7999888764    233466666655555   99999999999877776    555444

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.4e-20  Score=183.36  Aligned_cols=121  Identities=18%  Similarity=0.159  Sum_probs=95.2

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +.|.+.+.||+|+||+||+|..  +..||||+++.     ...+.|.+|+++|.++ +|||||++++++. .+.++||||
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~--~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~~~~~-~~~~~lv~E   83 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT-RHVNILLFMGYST-APQLAIVTQ   83 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEES--SSEEEEEECCCSSCCTTHHHHHHHHHHHHTTC-CCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             ccEEEEEEEeeCCCcEEEEEEE--CCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCEeeeeEEEe-ccEEEEEEe
Confidence            3478889999999999999743  34699999975     2345889999999887 9999999999875 456899999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||+ |+|.++|+..+     ..+++..+.+++.   .||.|||+++|+|||||    |++.++
T Consensus        84 y~~~g~L~~~l~~~~-----~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~  141 (276)
T d1uwha_          84 WCEGSSLYHHLHIIE-----TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDL  141 (276)
T ss_dssp             CCCEEEHHHHHHTSC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTS
T ss_pred             cCCCCCHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCC
Confidence            999 79999998532     3456555555444   89999999999877776    455444

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-19  Score=183.51  Aligned_cols=130  Identities=20%  Similarity=0.247  Sum_probs=101.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCc--EEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGR--SVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~--~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.++||+|+||+||+|. ..+|.  .||||+++..    ..+.+.+|+++|.++.+|||||+++++|...+.++||
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            348899999999999999984 56665  4788888652    3447999999998876799999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcC----------CCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          546 LERCT-CSLNDLIYVLSG----------SFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~----------~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||||+ |+|.++|+....          ......++.....+++.   .||+|+|+.+|+|||||       |+|||+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlk-------p~NIL~  160 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLA-------ARNILV  160 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-------GGGEEE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccc-------cceEEE
Confidence            99999 799999975310          01234566665555554   89999999999887776       666665

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=181.69  Aligned_cols=123  Identities=22%  Similarity=0.204  Sum_probs=97.6

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCCcceeEEEEEEe-CCEEEEEecCCC-
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHPNIVRWYGVESD-QDFVYLSLERCT-  550 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~-~~~~~LV~E~~~-  550 (613)
                      .|++.+.||+|+||.||+|.. .|+.||||+++.+ ..+.+.+|+++|.++ +||||++++++|.+ .+.+|||||||+ 
T Consensus         8 ~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~~~~~~~~E~~~l~~l-~HpnIv~~~g~~~~~~~~~~lv~ey~~~   85 (262)
T d1byga_           8 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAK   85 (262)
T ss_dssp             GEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--HHHHHTHHHHTTC-CCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             HeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEecCCcEEEEEeccCC
Confidence            488999999999999999754 6889999999864 456799999999887 99999999999865 456899999999 


Q ss_pred             ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          551 CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       551 GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |+|.++|+..    ....++.....+++.   .||.|||+.+|+|||||    ++..++
T Consensus        86 g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~  140 (262)
T d1byga_          86 GSLVDYLRSR----GRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN  140 (262)
T ss_dssp             EEHHHHHHHH----HHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS
T ss_pred             CCHHHHHHhc----CCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCC
Confidence            7999999764    223455555555544   89999999999887777    555554

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=184.65  Aligned_cols=124  Identities=20%  Similarity=0.191  Sum_probs=96.6

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-eCC-----cEEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-YEG-----RSVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~~g-----~~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|++.++||+|+||+||+|.. ..+     ..||||.+..    .....+.+|+.+|.++.+|||||+++++|.+.+.+
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~  116 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  116 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeE
Confidence            4599999999999999999853 222     3699999865    23447899999998887999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC-----------------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF-----------------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~-----------------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||||+ |+|.++|+..+...                 ....+++..+..++.   .||.|||+++|+|||||
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlK  191 (325)
T d1rjba_         117 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA  191 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS
T ss_pred             EEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc
Confidence            99999999 79999998653211                 112355555555444   89999999999887776

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=183.02  Aligned_cols=116  Identities=24%  Similarity=0.176  Sum_probs=90.6

Q ss_pred             eeEeecCceEEEEEEe---eCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCC
Q 007199          479 KEIAKGSNGTVVLEGN---YEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT  550 (613)
Q Consensus       479 ~~LG~G~fG~Vyk~~~---~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~  550 (613)
                      ++||+|+||+||+|..   .+++.||||+++..     ..+.+.+|+++|.++ +|||||+++++|.. +..+||||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~g~~~~-~~~~lvmE~~~   90 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNPYIVRMIGICEA-ESWMLVMEMAE   90 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC-CCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhC-CCCCCceEEEEecc-CCEEEEEEcCC
Confidence            5799999999999853   34568999999752     234799999999888 99999999999865 46789999999


Q ss_pred             -ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          551 -CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       551 -GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                       |+|.++++...      .+++..+.+++.   .||.|||+.+|+||||       ||+||||
T Consensus        91 ~g~L~~~l~~~~------~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDl-------Kp~Nill  140 (277)
T d1xbba_          91 LGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEESNFVHRDL-------AARNVLL  140 (277)
T ss_dssp             TEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHTTEECSCC-------SGGGEEE
T ss_pred             CCcHHHHHhhcc------CCCHHHHHHHHHHHHHHHhhHHhCCcccCCC-------cchhhcc
Confidence             69999998542      455666555554   9999999999877665       5555555

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.2e-19  Score=185.47  Aligned_cols=123  Identities=20%  Similarity=0.144  Sum_probs=102.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      +.|++.+.||+|+||+||+|. ..+|+.||||++.+      ...+.+.+|+++|..+ +|||||++++++.+.+..++|
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV-NFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHc-CCCcEeecccccccccccccc
Confidence            459999999999999999984 67899999999975      2345789999999777 999999999999999999999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ||||. |+|.+++...+      .+++..+..++.   .||.|||+.+|||||||    |+..+|
T Consensus       120 ~e~~~~g~l~~~l~~~~------~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g  178 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIG------RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG  178 (350)
T ss_dssp             EECCTTCBHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS
T ss_pred             cccccccchhhhHhhcC------CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCC
Confidence            99999 69999998643      456666655554   89999999999887776    554444

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.1e-19  Score=184.55  Aligned_cols=117  Identities=20%  Similarity=0.179  Sum_probs=95.8

Q ss_pred             eEEEe-eeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEe----CCEEEEEec
Q 007199          474 LVVFN-KEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESD----QDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~-~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~----~~~~~LV~E  547 (613)
                      .|.+. ++||+|+||+||+|. ..+++.||||+++.  .+.+.+|++++.++.+|||||+++++|.+    ...+|||||
T Consensus        12 ~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~--~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmE   89 (335)
T d2ozaa1          12 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   89 (335)
T ss_dssp             TEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC--cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEE
Confidence            47665 579999999999984 67899999999975  45688999988777799999999999976    457999999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||+ |+|.++|...    ....+++..+..++.   .|+.|||+.+|+|||||
T Consensus        90 y~~gg~L~~~i~~~----~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiK  138 (335)
T d2ozaa1          90 CLDGGELFSRIQDR----GDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK  138 (335)
T ss_dssp             CCCSEEHHHHHHSC----SCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCCCCcHHHHHHhc----CCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence            999 6999999853    233566666666655   89999999999877766

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.78  E-value=3.9e-19  Score=179.45  Aligned_cols=117  Identities=21%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             eEEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      +|...++||+|+||+||+|...+|+.||||+++..     ..+.+.+|+.+|.++ +|||||++++++...+..+++|||
T Consensus         3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKEL-KHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC-CCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC-CCCcEEeeeeecccCCceeEEEEe
Confidence            58999999999999999997778999999999753     245799999999777 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +.|.+...+..     ....+++..+..++.   .||.|||+.+|+|||||
T Consensus        82 ~~~~~~~~~~~-----~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiK  127 (286)
T d1ob3a_          82 LDQDLKKLLDV-----CEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK  127 (286)
T ss_dssp             CSEEHHHHHHT-----STTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             ehhhhHHHHHh-----hcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCC
Confidence            99765555554     334577777766664   99999999999887766

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.1e-19  Score=178.55  Aligned_cols=123  Identities=22%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             eEEEeeeEeecCceEEEEEEeeC-C----cEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEGNYE-G----RSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~~~~-g----~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      .|+..++||+|+||+||+|.... +    ..||||++...    ...+|.+|+++|.++ +|||||++++++...+..++
T Consensus         8 ~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           8 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF-SHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEEE
T ss_pred             HeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhc-CCCCEeeeeEEEecCCceEE
Confidence            48899999999999999985322 2    47999999753    233788999999888 99999999999999999999


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      |||||. |+|.+++...     ...++.....+++.   .|++|||+.+|+|||||    |++.++
T Consensus        87 v~e~~~~~~l~~~~~~~-----~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~  147 (283)
T d1mqba_          87 ITEYMENGALDKFLREK-----DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNL  147 (283)
T ss_dssp             EEECCTTEEHHHHHHHT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC
T ss_pred             EEEecccCcchhhhhcc-----cccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCC
Confidence            999999 6998888763     23455555444443   89999999999887776    555554

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.78  E-value=2.3e-19  Score=184.86  Aligned_cols=121  Identities=15%  Similarity=0.111  Sum_probs=99.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeC--CEEEEEecCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQ--DFVYLSLERC  549 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~--~~~~LV~E~~  549 (613)
                      ++|++.++||+|+||+||+|. ..+|+.||||+++....+.+.+|+++|.++..||||++++++|...  ..+++|||||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~  114 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  114 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeec
Confidence            459999999999999999984 6789999999999888889999999998885699999999999854  4799999999


Q ss_pred             C-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          550 T-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       550 ~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      . |+|.++.+         .+++..+..++.   .||.|||+++|+|||||       |+|||+
T Consensus       115 ~~~~L~~~~~---------~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiK-------p~NILi  162 (328)
T d3bqca1         115 NNTDFKQLYQ---------TLTDYDIRFYMYEILKALDYCHSMGIMHRDVK-------PHNVMI  162 (328)
T ss_dssp             CSCBGGGTTT---------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-------GGGEEE
T ss_pred             CCCcHHHHhc---------CCCHHHHHHHHHHHHHHHHHHhhccccccccc-------ccceEE
Confidence            9 68865432         345555554444   89999999999887766       555555

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.8e-19  Score=178.31  Aligned_cols=123  Identities=23%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEec
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE  547 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E  547 (613)
                      +|+..+.||+|+||+||+|. ..+|+.||||+++..     ..+.+.+|+.+|..+ +||||++++++|.+.+..++++|
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l-~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL-KHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhc-CcCCEEeeccccccccceeEEee
Confidence            49999999999999999985 678999999999752     235789999999776 99999999999999999999999


Q ss_pred             CCCc-cHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceeee
Q 007199          548 RCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLLK  610 (613)
Q Consensus       548 ~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLlk  610 (613)
                      ++.| +|..+++..      ..+++..+..++.   .||+|||+.+|+|||||       |+|||+.
T Consensus        82 ~~~~~~l~~~~~~~------~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiK-------P~NIli~  135 (292)
T d1unla_          82 FCDQDLKKYFDSCN------GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK-------PQNLLIN  135 (292)
T ss_dssp             CCSEEHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-------GGGEEEC
T ss_pred             eccccccccccccc------cccchhHHHHHHHHHHHHHHHhhcCCEeeeccc-------Ccccccc
Confidence            9995 777776643      3445555544444   89999999999887765       6777663

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=5.3e-19  Score=184.80  Aligned_cols=116  Identities=16%  Similarity=0.061  Sum_probs=92.2

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc------chHHHHHH---HHHHHhcCCCCcceeEEEEEEeCCEEE
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKE---IQNLIASDQHPNIVRWYGVESDQDFVY  543 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~------~~~~~~~E---i~~L~~l~~HpnIV~l~g~~~~~~~~~  543 (613)
                      .|++.++||+|+||+||+|. ..+|+.||||++.+.      ....+.+|   ++++..+ +|||||++++++.+.+.+|
T Consensus         5 dy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~-~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           5 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG-DCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSS-CCTTBCCEEEEEECSSEEE
T ss_pred             hCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcC-CCCcEEEEEEEEEECCEEE
Confidence            38999999999999999985 678999999999752      22345555   4444334 8999999999999999999


Q ss_pred             EEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          544 LSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       544 LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||||+ |+|.++|....      .+.+..+..++   +.||.|||+.+|+|||||
T Consensus        84 ivmE~~~gg~L~~~l~~~~------~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlK  134 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHG------VFSEADMRFYAAEIILGLEHMHNRFVVYRDLK  134 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             EEEEecCCCcHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHHHCCccceeec
Confidence            9999999 69999998653      34444444443   389999999999887776

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.1e-19  Score=180.38  Aligned_cols=130  Identities=22%  Similarity=0.170  Sum_probs=102.1

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|++.+.||+|+||.||+|..      .+++.||||+++..    ....+.+|+.++.++.+|||||+++++|.+.+..
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~  102 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT  102 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEE
Confidence            4599999999999999999842      45578999999863    2337889999998887899999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCC------------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGS------------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSA  606 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~------------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~Psn  606 (613)
                      +||||||+ |+|.++|+.....            .....+++....+++.   .||.|||+++++||||       ||+|
T Consensus       103 ~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDL-------Kp~N  175 (311)
T d1t46a_         103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDL-------AARN  175 (311)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC-------SGGG
T ss_pred             EEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccc-------cccc
Confidence            99999999 6999999875311            0122355555555444   8999999999988776       5555


Q ss_pred             eee
Q 007199          607 QLL  609 (613)
Q Consensus       607 iLl  609 (613)
                      ||+
T Consensus       176 Il~  178 (311)
T d1t46a_         176 ILL  178 (311)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            555

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.6e-19  Score=183.11  Aligned_cols=119  Identities=19%  Similarity=0.117  Sum_probs=92.7

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccchHHHHHHHHHHHhcCCCCcceeEEEEEEeC------CEEEEEe
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQ------DFVYLSL  546 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~------~~~~LV~  546 (613)
                      .|...++||+|+||+||+|. ..+|+.||||++.... ....+|+++|.++ +||||++++++|...      .++||||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~-~~~~~Ei~il~~l-~h~niv~~~~~~~~~~~~~~~~~~~lv~   98 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-RFKNRELQIMRKL-DHCNIVRLRYFFYSSGEKKDEVYLNLVL   98 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-SSCCHHHHHHHHC-CCTTBCCEEEEEEEC--CCSCCEEEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc-hHHHHHHHHHHhc-CCCCCCcEEEEEEecCccCCceEEEEEE
Confidence            38889999999999999985 6789999999998632 2345799999888 999999999998653      3589999


Q ss_pred             cCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          547 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       547 E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||+|++.+.+.....  ....+++..+..++.   .||+|||+++|+|||||
T Consensus        99 Ey~~~~~~~~l~~~~~--~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiK  149 (350)
T d1q5ka_          99 DYVPETVYRVARHYSR--AKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIK  149 (350)
T ss_dssp             ECCSEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC
T ss_pred             eccCCccHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            9999766655543211  344566666555554   99999999999877765

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-18  Score=176.37  Aligned_cols=121  Identities=20%  Similarity=0.121  Sum_probs=93.9

Q ss_pred             EEEeeeEeecCceEEEEEE-eeCCc----EEEEEEeec----cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEG-NYEGR----SVAVKRLVK----THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~-~~~g~----~VAVK~l~~----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV  545 (613)
                      |+..++||+|+||+||+|. ..+|+    .||||+++.    ...+.+.+|+++|.++ +|||||+++++|.+++ .+++
T Consensus        11 y~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~g~~~~~~-~~~v   88 (317)
T d1xkka_          11 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DNPHVCRLLGICLTST-VQLI   88 (317)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHC-CCTTBCCEEEEEESSS-EEEE
T ss_pred             CEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCC-eeEE
Confidence            9999999999999999984 44554    589998875    3455899999999888 9999999999998754 5667


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ||||. |+|.+++...     ...+++..+.+++.   .||.|||+++|+|||||       |+||||
T Consensus        89 ~e~~~~~~l~~~~~~~-----~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlK-------p~NIll  144 (317)
T d1xkka_          89 TQLMPFGCLLDYVREH-----KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA-------ARNVLV  144 (317)
T ss_dssp             EECCTTCBHHHHHHHT-----SSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-------GGGEEE
T ss_pred             EEeccCCccccccccc-----ccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcch-------hhccee
Confidence            77777 7999988863     33556665555444   89999999999877765       555555

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.4e-19  Score=179.61  Aligned_cols=116  Identities=19%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             eeeEeecCceEEEEEE-eeCCcEEEEEEeeccc--------hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          478 NKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH--------HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~--------~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      .++||+|+||+||+|. ..+|+.||||+++...        .+.+.+|+++|.++ +|||||++++++..++.+||||||
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL-SHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC-CCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhC-CCCCEeEEEeeeccCCceeehhhh
Confidence            5789999999999985 6789999999987521        23688999999888 999999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlK  596 (613)
                      |.|.+...+...+.  .........+.+.++.||+|||+++|+|||||
T Consensus        82 ~~~~~~~~~~~~~~--~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiK  127 (299)
T d1ua2a_          82 METDLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK  127 (299)
T ss_dssp             CSEEHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             hcchHHhhhhhccc--CCCHHHHHHHHHHHHHHHHHhhccceecccCC
Confidence            99654444443211  11222233444455599999999999877765

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.7e-19  Score=182.24  Aligned_cols=119  Identities=19%  Similarity=0.191  Sum_probs=93.9

Q ss_pred             ccCceEEEeeeEeecCceEEEEE-EeeCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          470 RIGKLVVFNKEIAKGSNGTVVLE-GNYEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       470 ~i~~~~~~~~~LG~G~fG~Vyk~-~~~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      .++.+|.+.+.||+|+||+||+| ...+|+.||||++++..    .+.+.+|+++|.++ +||||+++++++....    
T Consensus         5 ~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l-~hp~iv~~~~~~~~~~~~~~   83 (345)
T d1pmea_           5 DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF-RHENIIGINDIIRAPTIEQM   83 (345)
T ss_dssp             CCCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHC-CCTTBCCCCEEECCSSTTTC
T ss_pred             CcCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeecccccc
Confidence            45566999999999999999998 46889999999998632    34788999999888 9999999999997653    


Q ss_pred             -EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 -FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 -~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                       .+||+++++.|+|.+++...       .+++..+..++.   .||+|||+++|+|||||
T Consensus        84 ~~~~l~~~~~~g~L~~~l~~~-------~l~~~~i~~i~~qil~al~yLH~~~iiHRDIK  136 (345)
T d1pmea_          84 KDVYLVTHLMGADLYKLLKTQ-------HLSNDHICYFLYQILRGLKYIHSANVLHRDLK  136 (345)
T ss_dssp             CCEEEEEECCCEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             ceEEEEEeecCCchhhhhhcC-------CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC
Confidence             46777776668999999753       356666655555   89999999999888876

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-18  Score=174.53  Aligned_cols=129  Identities=18%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             ceEEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHh-cCCCCcceeEEEEEEeCC----EEEEEec
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIA-SDQHPNIVRWYGVESDQD----FVYLSLE  547 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~-l~~HpnIV~l~g~~~~~~----~~~LV~E  547 (613)
                      +.|.+.+.||+|+||.||+|. .+|+.||||+++......+.+|.+++.. .++|||||++++++.+.+    .+|||||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~-~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E   81 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGK-WRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEE-ETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEE-ECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence            458899999999999999975 6899999999987666666666655432 249999999999998754    6899999


Q ss_pred             CCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCce-eeccceecCCCcCcceee
Q 007199          548 RCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMEN-TKDIELWKANGHPSAQLL  609 (613)
Q Consensus       548 ~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~ii-HrDlKllh~dg~PsniLl  609 (613)
                      ||+ |+|.++|+..       .++.....++..   .||.|+|....- +++.+++|+|+||+||||
T Consensus        82 y~~~g~L~~~l~~~-------~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl  141 (303)
T d1vjya_          82 YHEHGSLFDYLNRY-------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV  141 (303)
T ss_dssp             CCTTCBHHHHHHHC-------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEE
T ss_pred             cccCCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEE
Confidence            999 7999999853       244444444443   899999986432 344557778888888887

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-18  Score=174.11  Aligned_cols=118  Identities=19%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeeccc---------hHHHHHHHHHHHhcC-CCCcceeEEEEEEeCCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH---------HDVALKEIQNLIASD-QHPNIVRWYGVESDQDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~~---------~~~~~~Ei~~L~~l~-~HpnIV~l~g~~~~~~~  541 (613)
                      ++|++.++||+|+||+||+|. ..+|+.||||++.+..         ...+.+|+++|.++. .|||||++++++.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            459999999999999999985 6789999999997521         224678999998872 39999999999999999


Q ss_pred             EEEEecCCC--ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT--CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~--GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      .|+||||+.  +++.+++....      .+++..+..++.   .||.|||+.+|+|||||
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~------~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiK  137 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCHNCGVLHRDIK  137 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             EEEEEEeccCcchHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHCCCccccCc
Confidence            999999997  38888887542      455665555544   89999999998777665

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.75  E-value=3.7e-18  Score=172.98  Aligned_cols=121  Identities=15%  Similarity=0.076  Sum_probs=100.0

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecC
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-THHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER  548 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~  548 (613)
                      ++++|++.+.||+|+||+||+|. ..+|+.||||.+.. ...+.+.+|++.+..+.+|+|++.+++++......++||||
T Consensus         3 ig~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           3 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            45679999999999999999985 67899999999875 33456888998888885669999999999999999999999


Q ss_pred             CCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          549 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       549 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |.|+|.++++...     ..++.....+++.   .+|+|||+.+|+|||||
T Consensus        83 ~~~~l~~~~~~~~-----~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiK  128 (293)
T d1csna_          83 LGPSLEDLLDLCG-----RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIK  128 (293)
T ss_dssp             CCCBHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC
T ss_pred             cCCCHHHHHHhhc-----cchhhHHHHHHHHHHHHHHHHHHHCCceeccCC
Confidence            9999999997643     2355554444443   89999999999888776

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=175.56  Aligned_cols=124  Identities=20%  Similarity=0.222  Sum_probs=94.2

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC-E
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD-F  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~-~  541 (613)
                      +.|++.++||+|+||+||+|..      .+++.||||+++..    ..+.+.+|+..+.++.+|+||+++++++...+ .
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~   92 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   92 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCe
Confidence            4599999999999999999842      34568999999752    23467888888888878999999999987654 7


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCC----------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSF----------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~----------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++|||||+ |+|.++|+..+...          ....+++..+..++.   .||.|||+++|+|||||
T Consensus        93 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlK  161 (299)
T d1ywna1          93 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA  161 (299)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCC
Confidence            899999999 79999998753110          122355666655554   89999999999877766

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.6e-18  Score=171.19  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=92.8

Q ss_pred             ceEEEeeeEeecCceEEEEEE-e---eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-N---YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~---~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~L  544 (613)
                      +.|++.+.||+|+||+||+|. .   ..+..||||.++..    ..+.+.+|+++|.++ +|||||++++++. .+..||
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEC-SSSCEE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEe-cCeEEE
Confidence            459999999999999999984 2   23457999998752    234789999999887 9999999999985 567899


Q ss_pred             EecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          545 SLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       545 V~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      |||||+ |+|.+++...     ...+++.....++.   .||.|||+.+|+|||||
T Consensus        85 v~E~~~~g~l~~~~~~~-----~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlK  135 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVR-----KYSLDLASLILYAYQLSTALAYLESKRFVHRDIA  135 (273)
T ss_dssp             EEECCTTEEHHHHHHHT-----TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEeccCCcHHhhhhcc-----CCCCCHHHHHHHHHHHHHHhhhhcccCeeccccc
Confidence            999999 7999988763     23456666655544   89999999999776654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-18  Score=176.24  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEe-e-------CCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCC
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN-Y-------EGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQD  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~-~-------~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~  540 (613)
                      +.|++.+.||+|+||.||++.. .       ++..||||+++...    ..++.+|...+.++.+|||||+++++|.+++
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~   92 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   92 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence            4599999999999999999742 2       23479999997632    3478889988888878999999999999999


Q ss_pred             EEEEEecCCC-ccHHHHHHHhcCC----------CccccCCHHHHHHHHH---HHHHHHhcCCceeeccc----eecCCC
Q 007199          541 FVYLSLERCT-CSLNDLIYVLSGS----------FEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE----LWKANG  602 (613)
Q Consensus       541 ~~~LV~E~~~-GsL~~~L~~~~~~----------~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK----llh~dg  602 (613)
                      ..++|||||. |+|.++|+..+..          .....++..++.+++.   .||+|||+.+|+|||||    |++.++
T Consensus        93 ~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~  172 (299)
T d1fgka_          93 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN  172 (299)
T ss_dssp             SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC
T ss_pred             eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCC
Confidence            9999999999 7999999865311          0123466777666665   89999999999887776    555544

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=174.10  Aligned_cols=117  Identities=24%  Similarity=0.140  Sum_probs=87.3

Q ss_pred             ceEEEeeeEeecCceEEEEEEe--eCC--cEEEEEEeecc------chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN--YEG--RSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~--~~g--~~VAVK~l~~~------~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|++.+.||+|+||+||+|..  .++  ..||||++.+.      ..+.|.+|+++|.++ +|||||+++++|.+ +..
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l-~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL-DHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSC
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEee-cch
Confidence            3499999999999999999853  223  36899988752      234789999999888 99999999999975 467


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++...     ...++..+..+++.   .||.|||+++|+|||||
T Consensus        86 ~lv~e~~~~~~l~~~~~~~-----~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDik  138 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKH-----QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA  138 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHH-----GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             heeeeeecCcchhhhhhcc-----cCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeec
Confidence            89999999 7999988764     23466666666665   89999999998776665

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.2e-18  Score=174.10  Aligned_cols=116  Identities=19%  Similarity=0.093  Sum_probs=90.0

Q ss_pred             EEEeeeEeecCceEEEEEEe-eC---CcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC-CEEEEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGN-YE---GRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ-DFVYLS  545 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~-~~---g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~-~~~~LV  545 (613)
                      +.+.++||+|+||+||+|.. .+   ...||||++++.    ..+.|.+|+++|.++ +|||||+++|++... ...++|
T Consensus        29 ~~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~g~~~~~~~~~~lv  107 (311)
T d1r0pa_          29 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF-SHPNVLSLLGICLRSEGSPLVV  107 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTC-CCTTBCCCCEEEEETTTEEEEE
T ss_pred             eccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC-CCCCEeEEeEEEEecCCceEEE
Confidence            34578999999999999853 22   236999999752    334799999999888 999999999998764 589999


Q ss_pred             ecCCC-ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+ |+|.++++..     .......+..+++.   .||.|+|+.+|+|||||
T Consensus       108 ~E~~~~g~l~~~~~~~-----~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK  157 (311)
T d1r0pa_         108 LPYMKHGDLRNFIRNE-----THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA  157 (311)
T ss_dssp             EECCTTCBHHHHHHCT-----TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEeecCchhhhhccc-----cccchHHHHHHHHHHHHHhhhhhcccCcccCCcc
Confidence            99999 7999998753     22334444444443   89999999999887776

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=181.13  Aligned_cols=121  Identities=27%  Similarity=0.273  Sum_probs=95.4

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeC------C
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQ------D  540 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~------~  540 (613)
                      ++|+..++||+|+||+||+|. ..+|+.||||+++..     ..+.+.+|+.+|.++ +|||||+++++|...      .
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l-~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-NHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCCSTTTCC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhc-CCCCeeEEEEEEecccccccCc
Confidence            559999999999999999984 678999999999853     233688999999887 999999999999643      6


Q ss_pred             EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          541 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       541 ~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      .+|+|||||.|+|.+.+..        .+++..+..++.   .||.|||+.+|+|||||       |+|||+
T Consensus        96 ~~~iv~Ey~~~~l~~~~~~--------~~~~~~i~~~~~qil~gl~~LH~~giiHrDlK-------P~Nil~  152 (355)
T d2b1pa1          96 DVYLVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK-------PSNIVV  152 (355)
T ss_dssp             EEEEEEECCSEEHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-------GGGEEE
T ss_pred             eeEEEEeccchHHHHhhhc--------CCCHHHHHHHHHHHHHHHHHhhhcccccccCC-------cccccc
Confidence            8999999999877776642        245555544444   99999999999988886       555554

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=3.1e-18  Score=174.24  Aligned_cols=123  Identities=19%  Similarity=0.142  Sum_probs=96.5

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeecc----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKT----HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|++.+.||+|+||+||+|..      .+++.||||++...    ..+++.+|+++|.++ +||||++++++|...+..
T Consensus        13 ~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l-~h~niv~~~~~~~~~~~~   91 (301)
T d1lufa_          13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF-DNPNIVKLLGVCAVGKPM   91 (301)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSC
T ss_pred             HHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhc-CCCCcccceeeeccCCce
Confidence            3489999999999999999853      34578999999863    234799999999887 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC------------------ccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF------------------EEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~------------------~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      +++||||+ |+|.++|+......                  ....++......++.   .||+|||+.+++|||||
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlK  167 (301)
T d1lufa_          92 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA  167 (301)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEc
Confidence            99999999 79999998643110                  112244444444443   89999999999877765

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-18  Score=179.58  Aligned_cols=118  Identities=17%  Similarity=0.178  Sum_probs=90.9

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      +.++|+..+.||+|+||+||+|. ..+|+.||||++++.     ..+.+.+|+++|.++ +|||||+++++|...+    
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-~hpniv~l~~~~~~~~~~~~   94 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-RHENVIGLLDVFTPDETLDD   94 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-CBTTBCCCSEEECSCSSTTT
T ss_pred             cCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhc-CCCCeeEEEEEeccCccccc
Confidence            45669999999999999999984 678999999999853     234688999999888 9999999999998655    


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        ++|||||||+++|..+++..       .+++..+..++.   .||.|||+++|+|||||
T Consensus        95 ~~~~~lv~e~~~~~l~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiK  148 (346)
T d1cm8a_          95 FTDFYLVMPFMGTDLGKLMKHE-------KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLK  148 (346)
T ss_dssp             CCCCEEEEECCSEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             cceEEEEEecccccHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence              57999999987888887642       356666555544   89999999999887775

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.2e-18  Score=174.76  Aligned_cols=123  Identities=17%  Similarity=0.124  Sum_probs=95.8

Q ss_pred             ceEEEeeeEeecCceEEEEEEe------eCCcEEEEEEeeccc----hHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEGN------YEGRSVAVKRLVKTH----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFV  542 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~~------~~g~~VAVK~l~~~~----~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~  542 (613)
                      +.|.+.+.||+|+||+||+|..      .+++.||||+++...    ...+.+|++++.++ +|||||+++++|...+..
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF-NCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC-CCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHc-CCCCEeeeeeEEecCCce
Confidence            4589999999999999999742      346789999998632    23688999999887 999999999999999999


Q ss_pred             EEEecCCC-ccHHHHHHHhcCCC----ccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          543 YLSLERCT-CSLNDLIYVLSGSF----EEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       543 ~LV~E~~~-GsL~~~L~~~~~~~----~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      ++|||||+ |+|.+++...+...    ...........+++   +.||.|||..+|+|||||
T Consensus        99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk  160 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLA  160 (308)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCS
T ss_pred             eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEc
Confidence            99999999 79999998643110    11223344444433   389999999998877776

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-18  Score=180.15  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=93.0

Q ss_pred             cCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-----chHHHHHHHHHHHhcCCCCcceeEEEEEEeCC----
Q 007199          471 IGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-----HHDVALKEIQNLIASDQHPNIVRWYGVESDQD----  540 (613)
Q Consensus       471 i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~----  540 (613)
                      +.++|+..+.||+|+||+||+|. ..+|+.||||++++.     ..+.+.+|+++|.++ +|||||++++++....    
T Consensus        16 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          16 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM-KHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             EETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSTTT
T ss_pred             CCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhc-CCCCeeeEEEEEeecccccc
Confidence            34569999999999999999985 678999999999863     234688999999888 9999999999986432    


Q ss_pred             --EEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          541 --FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       541 --~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                        ..+++++++.|+|.++++..       .+++..+..++.   .||.|||+++|+|||||
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~~-------~l~e~~~~~i~~qil~aL~~LH~~giiHrDiK  148 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIHSADIIHRDLK  148 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CceEEEEEeecCCchhhhcccc-------cccHHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence              34555544447999998532       366666655554   89999999999888876

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.2e-17  Score=169.41  Aligned_cols=122  Identities=19%  Similarity=0.119  Sum_probs=97.3

Q ss_pred             cccCceEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc-chHHHHHHHHHHHhcCCCC-cceeEEEEEEeCCEEEEE
Q 007199          469 RRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT-HHDVALKEIQNLIASDQHP-NIVRWYGVESDQDFVYLS  545 (613)
Q Consensus       469 ~~i~~~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~-~~~~~~~Ei~~L~~l~~Hp-nIV~l~g~~~~~~~~~LV  545 (613)
                      .+++++|++.+.||+|+||+||+|. ..+|+.||||++... ..+++.+|++++..+ +|+ +|+.+..++...+..++|
T Consensus         3 ~~vg~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l-~~~~~i~~~~~~~~~~~~~~iv   81 (299)
T d1ckia_           3 LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMM-QGGVGIPTIRWCGAEGDYNVMV   81 (299)
T ss_dssp             CEETTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHS-TTSTTCCCEEEEEEETTEEEEE
T ss_pred             CeECCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHc-cCCCcccEEEEEEecCCEEEEE
Confidence            3567779999999999999999984 678999999998863 345788999999888 555 566666777888899999


Q ss_pred             ecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccc
Q 007199          546 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIE  596 (613)
Q Consensus       546 ~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlK  596 (613)
                      ||||+|+|.+.+...     ...+++.++..++.   .||+|||+++|+|||||
T Consensus        82 me~~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiK  130 (299)
T d1ckia_          82 MELLGPSLEDLFNFC-----SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK  130 (299)
T ss_dssp             EECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC
T ss_pred             EEEcCCchhhhhhhc-----cCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCC
Confidence            999999888877753     33466666666555   89999999998776665

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.2e-18  Score=171.49  Aligned_cols=126  Identities=22%  Similarity=0.218  Sum_probs=93.5

Q ss_pred             ceEEEeeeEeecCceEEEEEE-eeC-CcEEEEEEeecc-----chHHHHHHHHHHHhc--CCCCcceeEEEEEEe-----
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG-NYE-GRSVAVKRLVKT-----HHDVALKEIQNLIAS--DQHPNIVRWYGVESD-----  538 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~-~~~-g~~VAVK~l~~~-----~~~~~~~Ei~~L~~l--~~HpnIV~l~g~~~~-----  538 (613)
                      ++|++.+.||+|+||+||+|. ..+ ++.||||+++..     ....+.+|+++|..+  .+||||++++++|..     
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~   86 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   86 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence            459999999999999999985 344 678999998752     223577888777654  489999999999864     


Q ss_pred             CCEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          539 QDFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       539 ~~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ...++++||||.|.+..+....    ....+++..+..++.   .||+|||+++|+|||||       |+|||+
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiK-------p~NILi  149 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLDKV----PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK-------PQNILV  149 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHS----CTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-------GGGEEE
T ss_pred             CceEEEEEEeccCCchhhhhhc----cCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCC-------ccEEEE
Confidence            2478999999997555444432    334556665554443   99999999999887766       666665

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1e-17  Score=171.95  Aligned_cols=118  Identities=19%  Similarity=0.073  Sum_probs=96.0

Q ss_pred             ceEEEeeeEeecCceEEEEEE----eeCCcEEEEEEeec-------cchHHHHHHHHHHHhcCCCCcceeEEEEEEeCCE
Q 007199          473 KLVVFNKEIAKGSNGTVVLEG----NYEGRSVAVKRLVK-------THHDVALKEIQNLIASDQHPNIVRWYGVESDQDF  541 (613)
Q Consensus       473 ~~~~~~~~LG~G~fG~Vyk~~----~~~g~~VAVK~l~~-------~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~  541 (613)
                      +.|++.+.||+|+||+||+|.    ..+|+.||||++++       ...+.+.+|+++|.++.+||||+++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            449999999999999999984    34689999999864       2345788999999998444899999999999999


Q ss_pred             EEEEecCCC-ccHHHHHHHhcCCCccccCCHHHHHHH---HHHHHHHHhcCCceeeccc
Q 007199          542 VYLSLERCT-CSLNDLIYVLSGSFEEQLNAKEQDSNL---LNEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       542 ~~LV~E~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~---~~~~l~~Lh~~~iiHrDlK  596 (613)
                      .+++||||. |+|.+++...+      ...+..+..+   ++.|+.|+|+++|+|||||
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~------~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiK  156 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE------RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK  156 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             eeeeeecccccHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHhhcCCEEeccCC
Confidence            999999999 69999998654      2334444333   3489999999999887766

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-17  Score=169.02  Aligned_cols=117  Identities=19%  Similarity=0.189  Sum_probs=90.5

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeec-----cchHHHHHHHHHHHhcCCCCcceeEEEEEEe--------C
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK-----THHDVALKEIQNLIASDQHPNIVRWYGVESD--------Q  539 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~-----~~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~--------~  539 (613)
                      +|++.+.||+|+||+||+|. ..+|+.||||++..     ...+.+.+|+++|.++ +||||+++++.+..        .
T Consensus        11 rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l-~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          11 KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL-KHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHC-CCTTBCCEEEEEEC---------
T ss_pred             CEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHh-cCCCccceEeeeecccccccccC
Confidence            49999999999999999985 67899999999864     2345789999999888 99999999999865        3


Q ss_pred             CEEEEEecCCCccHHHHHHHhcCCCccccCCHHHHHHHH---HHHHHHHhcCCceeeccc
Q 007199          540 DFVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLL---NEVRIRLLPVMENTKDIE  596 (613)
Q Consensus       540 ~~~~LV~E~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~~---~~~l~~Lh~~~iiHrDlK  596 (613)
                      +.+|+|||||.+.+......     ....+.+..+..++   +.||+|||+.+|+|||||
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~-----~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlK  144 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSN-----VLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMK  144 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTC-----TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             ceEEEEEeccCCCccchhhh-----cccccccHHHHHHHHHHHHHHHHhccCCEEecCcC
Confidence            46899999999655544433     23345555554444   389999999999887775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.51  E-value=5.6e-14  Score=154.50  Aligned_cols=122  Identities=17%  Similarity=0.113  Sum_probs=91.1

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceee---ccccccCCC---CCeEEEecCCCCeEEEEecCCCcee
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYS---SYQASFNSN---ASEFYLDVDEDWELYFHSKRFGKMK  116 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s---~~~~~~~~~---~~~~~i~~~~DG~lY~~~~~~G~l~  116 (613)
                      .|.+.+++|||+|.+|.|||||++||+++|+|+...+-..   .........   .+..++.++.||.||++|+.+|++ 
T Consensus        61 tPiv~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~-  139 (560)
T d1kv9a2          61 TPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKA-  139 (560)
T ss_dssp             CCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCE-
T ss_pred             CCEEECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcE-
Confidence            3456999999999999999999999999999975533211   100000000   012344455599999999999999 


Q ss_pred             eecccHHH-----HhhhCceeecCCcEEEEeec------ceEEEEECCCCcEEEEEecCCC
Q 007199          117 KLSSSAEE-----YIRRMPYISKDGGVTLGAMK------TSVFLVDVKSGRVVDNYVLDFS  166 (613)
Q Consensus       117 ~~~~~~~~-----~v~~sP~~~~dg~v~~Gs~~------~~~~~vD~~tG~~~~~~~~~~~  166 (613)
                      .|.+...+     .+.++|.+. ++.||+|...      +.++|+|++||+++|++.+...
T Consensus       140 ~w~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~  199 (560)
T d1kv9a2         140 IWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG  199 (560)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             EeccCccCcccceeeeeeeeee-cCcccccccceeccccceEEEEECCCceEEeeeeeccc
Confidence            89887644     356788888 8889998753      6799999999999999997543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.51  E-value=1.1e-13  Score=152.23  Aligned_cols=121  Identities=13%  Similarity=0.153  Sum_probs=90.6

Q ss_pred             CCCCCCCEEEEEec-CCcEEEEeC-CCCeeeEEeeCCCceeecccccc-CCC-----CCeEEEecCCCCeEEEEecCCCc
Q 007199           43 PLPPEPDVALVAAL-DGTIHLVDT-KLGKIRWSFGTGRPIYSSYQASF-NSN-----ASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        43 ~~~~~~~~v~v~t~-dG~l~ald~-~tG~~~W~~~~~~~i~s~~~~~~-~~~-----~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      .|.+.+++|||+|. +|+|||+|+ .||+++|+|+...+......... ...     .+..++.++.||.|||+|++||+
T Consensus        57 tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~  136 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhh
Confidence            34468999999996 799999997 58999999986554333211100 000     01233445569999999999999


Q ss_pred             eeeecccHH-----HHhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCC
Q 007199          115 MKKLSSSAE-----EYIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       115 l~~~~~~~~-----~~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      + .|.+.+.     ..+.++|++. ++.||+|..      .+.++|+|++||+++|++.+..
T Consensus       137 ~-~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  196 (571)
T d2ad6a1         137 I-NWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG  196 (571)
T ss_dssp             E-EEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             h-hccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEeccC
Confidence            9 8887553     3577899999 788999985      6789999999999999998643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.48  E-value=1.6e-13  Score=151.17  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=91.2

Q ss_pred             CCCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecccccc-------CCCCCeEEEecCCCCeEEEEecCCCc
Q 007199           42 PPLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASF-------NSNASEFYLDVDEDWELYFHSKRFGK  114 (613)
Q Consensus        42 ~~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~-------~~~~~~~~i~~~~DG~lY~~~~~~G~  114 (613)
                      +.|.+.+++||++|.+|.|||||++||+++|+|+...+.........       ....+.+|+ ++.||.|||+|+.+|+
T Consensus        71 stPiv~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~t~~g~l~alda~tG~  149 (573)
T d1kb0a2          71 ATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYV-GAWDGRLIALDAATGK  149 (573)
T ss_dssp             CCCEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEE-ECTTSEEEEEETTTCC
T ss_pred             ECCEEECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEE-Eecccceeeecccccc
Confidence            34457999999999999999999999999999986544322211000       000123444 5559999999999999


Q ss_pred             eeeecccHHH------HhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecCCC
Q 007199          115 MKKLSSSAEE------YIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLDFS  166 (613)
Q Consensus       115 l~~~~~~~~~------~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~~~  166 (613)
                      + .|.+.+.+      .+.++|.+. ++.||+|+.      .+.++|+|++||+++|++.+...
T Consensus       150 ~-~W~~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~  211 (573)
T d1kb0a2         150 E-VWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG  211 (573)
T ss_dssp             E-EEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             c-eecccCccCCcceEEeecceEEE-eccEEEeeccccccccceEEEEecCCccceeeeeeccc
Confidence            9 88776532      245678888 888999875      46899999999999999987543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.47  E-value=2.1e-13  Score=150.76  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=89.6

Q ss_pred             CCCCCCEEEEEec-CCcEEEEeC-CCCeeeEEeeCCCceeecccc----------ccCC--CCCeEEEecCCCCeEEEEe
Q 007199           44 LPPEPDVALVAAL-DGTIHLVDT-KLGKIRWSFGTGRPIYSSYQA----------SFNS--NASEFYLDVDEDWELYFHS  109 (613)
Q Consensus        44 ~~~~~~~v~v~t~-dG~l~ald~-~tG~~~W~~~~~~~i~s~~~~----------~~~~--~~~~~~i~~~~DG~lY~~~  109 (613)
                      |-+.++++|++|. ++.+||+|. .||+++|+|+...........          ....  .....++.++.||.||++|
T Consensus        58 Piv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Ald  137 (596)
T d1w6sa_          58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN  137 (596)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred             CEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeec
Confidence            4468999999875 699999996 699999999755432111000          0011  1122455666799999999


Q ss_pred             cCCCceeeecccHH-----HHhhhCceeecCCcEEEEee------cceEEEEECCCCcEEEEEecC
Q 007199          110 KRFGKMKKLSSSAE-----EYIRRMPYISKDGGVTLGAM------KTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       110 ~~~G~l~~~~~~~~-----~~v~~sP~~~~dg~v~~Gs~------~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      ++||++ .|.+...     ..+.++|.+. ++.||+|+.      .+.++|+|++||+++|+|.+.
T Consensus       138 a~tG~~-~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         138 AETGET-VWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             TTTCCE-EEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             cccCce-eccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            999999 8988543     3578899999 888999975      489999999999999999864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=7.8e-13  Score=145.90  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=86.2

Q ss_pred             CCCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccc-----cCCCCCeEEEecCCCCeEEEEecCCCceee
Q 007199           43 PLPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQAS-----FNSNASEFYLDVDEDWELYFHSKRFGKMKK  117 (613)
Q Consensus        43 ~~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~-----~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~  117 (613)
                      .|.+.+++||++|.+|.|||||+.||+++|+|+...+........     .....+.+|+. +.|+.||++|++||++ .
T Consensus        63 tPiv~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~-t~~~~l~alda~tG~~-~  140 (582)
T d1flga_          63 QAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFG-TLDASVVALNKNTGKV-V  140 (582)
T ss_dssp             CCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEE-ETTTEEEEEESSSCCE-E
T ss_pred             CCEEECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEe-cCCCeEEEecccccce-e
Confidence            345689999999999999999999999999998654322211000     00011245554 5599999999999999 8


Q ss_pred             ecccHHH-----HhhhCceeecCC----cEEE-E------eecceEEEEECCCCcEEEEEecC
Q 007199          118 LSSSAEE-----YIRRMPYISKDG----GVTL-G------AMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       118 ~~~~~~~-----~v~~sP~~~~dg----~v~~-G------s~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      |...+.+     ...++|.+..++    .+++ |      +..+.++|+|++||+++|++.+-
T Consensus       141 W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~  203 (582)
T d1flga_         141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             eeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEecc
Confidence            8876543     356788877564    2333 3      23568999999999999999763

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=3.9e-13  Score=139.07  Aligned_cols=125  Identities=17%  Similarity=0.030  Sum_probs=91.6

Q ss_pred             eEEEeeeEeecCceEEEEEE-eeCCcEEEEEEeecc--chHHHHHHHHHHHhc----------CCCCcceeEEEEEEe--
Q 007199          474 LVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT--HHDVALKEIQNLIAS----------DQHPNIVRWYGVESD--  538 (613)
Q Consensus       474 ~~~~~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~~--~~~~~~~Ei~~L~~l----------~~HpnIV~l~g~~~~--  538 (613)
                      +|++.++||+|+||+||+|. ..+|+.||||++++.  ..+.+.+|+++|..+          ..|+||+++++++..  
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~   93 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKG   93 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeecc
Confidence            49999999999999999985 678999999999874  235778898888766          146889999988864  


Q ss_pred             CCEEEEEecCCC--ccHHHHHHHhcCCCccccCCHHHHHHHHH---HHHHHHhc-CCceeeccceecCCCcCcceee
Q 007199          539 QDFVYLSLERCT--CSLNDLIYVLSGSFEEQLNAKEQDSNLLN---EVRIRLLP-VMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       539 ~~~~~LV~E~~~--GsL~~~L~~~~~~~~~~~~~~~~~~~~~~---~~l~~Lh~-~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ....+++|+++.  ++........    ......+..+..++.   .||.|||+ .+|+||||       ||+||||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDl-------Kp~NIll  159 (362)
T d1q8ya_          94 PNGVHVVMVFEVLGENLLALIKKY----EHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDI-------KPENVLM  159 (362)
T ss_dssp             TTEEEEEEEECCCCEEHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCC-------SGGGEEE
T ss_pred             ccceeeeeeecccccccccccccc----cccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccC-------ChhHeee
Confidence            356667777666  3555544443    344566666655544   89999997 77877765       5556655

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.39  E-value=9.5e-13  Score=123.83  Aligned_cols=113  Identities=15%  Similarity=0.061  Sum_probs=81.8

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeeccc---------------------hHHHHHHHHHHHhcCCCCcceeEE
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTH---------------------HDVALKEIQNLIASDQHPNIVRWY  533 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~~---------------------~~~~~~Ei~~L~~l~~HpnIV~l~  533 (613)
                      +.+.+.||+|+||+||+|...+|+.||||.++...                     .....+|.+.|.++ .|++++..+
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL-QGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT-TTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc-cCCCcceEE
Confidence            36789999999999999877789999999876310                     11345688888777 999999988


Q ss_pred             EEEEeCCEEEEEecCCCc-cHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHhcCCceeeccceecCCCcCcceee
Q 007199          534 GVESDQDFVYLSLERCTC-SLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLL  609 (613)
Q Consensus       534 g~~~~~~~~~LV~E~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lh~~~iiHrDlKllh~dg~PsniLl  609 (613)
                      ++.  .  .+|+|||++| .+.+          ........+...++.++.|||+.+|+||||       ||+|||+
T Consensus        81 ~~~--~--~~lvme~~~~~~~~~----------l~~~~~~~i~~ql~~~l~~lH~~giiHrDi-------KP~NILv  136 (191)
T d1zara2          81 AWE--G--NAVLMELIDAKELYR----------VRVENPDEVLDMILEEVAKFYHRGIVHGDL-------SQYNVLV  136 (191)
T ss_dssp             EEE--T--TEEEEECCCCEEGGG----------CCCSCHHHHHHHHHHHHHHHHHTTEECSCC-------STTSEEE
T ss_pred             Eec--C--CEEEEEeeccccccc----------hhhHHHHHHHHHHHHHHHHHhhCCEEEccC-------Chhheee
Confidence            653  2  2799999996 4321          112233456666679999999999876665       4666665

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.30  E-value=9.5e-12  Score=136.66  Aligned_cols=174  Identities=14%  Similarity=0.106  Sum_probs=112.7

Q ss_pred             CCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeec--cccccCCCCCeEEEecC-----CCCeEEEEecCCCceee
Q 007199           45 PPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSS--YQASFNSNASEFYLDVD-----EDWELYFHSKRFGKMKK  117 (613)
Q Consensus        45 ~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~--~~~~~~~~~~~~~i~~~-----~DG~lY~~~~~~G~l~~  117 (613)
                      +..++.||+++.||+|||||++||+++|++....+-...  ..++...+ +.+|++.+     .+|.++++|..||++ .
T Consensus       112 a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~-~  189 (571)
T d2ad6a1         112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGEL-K  189 (571)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCE-E
T ss_pred             eeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcE-E
Confidence            457799999999999999999999999999865421111  01111111 24555543     388999999999999 8


Q ss_pred             ecccHHH--------------------------------------HhhhCceeec-CCcEEEEee---------------
Q 007199          118 LSSSAEE--------------------------------------YIRRMPYISK-DGGVTLGAM---------------  143 (613)
Q Consensus       118 ~~~~~~~--------------------------------------~v~~sP~~~~-dg~v~~Gs~---------------  143 (613)
                      |.+.+..                                      .+.+++.+.. .+.+|+|..               
T Consensus       190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~  269 (571)
T d2ad6a1         190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccc
Confidence            8654321                                      1334455543 356887766               


Q ss_pred             -cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCc
Q 007199          144 -KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGE  222 (613)
Q Consensus       144 -~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~  222 (613)
                       .++++|||++||+++|.|.....    ..++-+... .+     .+.+. ..+. .....++.+..++.++++|++||+
T Consensus       270 ~s~svvAld~~TG~~~W~~q~~~~----D~Wd~D~~~-~~-----~l~~~-~~~g-~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         270 WTMTIWGRDLDTGMAKWGYQKTPH----DEWDFAGVN-QM-----VLTDQ-PVNG-KMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTT----CSSCCCCCC-CC-----EEEEE-EETT-EEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cccceeeeeccchhheecccccCc----ccccccccc-cc-----ceeee-eccC-ccccceeeccccceEEEEecCCCc
Confidence             57899999999999999986431    111111100 00     00000 0000 012367889999999999999999


Q ss_pred             eEEEEEecee
Q 007199          223 VLWNVAYADF  232 (613)
Q Consensus       223 ~~Wn~t~~~~  232 (613)
                      ++|-..+...
T Consensus       338 ~i~~~~~~~~  347 (571)
T d2ad6a1         338 LIVAEKVDPA  347 (571)
T ss_dssp             EEEEEESSTT
T ss_pred             EeeeeccCCc
Confidence            9998776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.22  E-value=5e-11  Score=131.39  Aligned_cols=171  Identities=13%  Similarity=0.076  Sum_probs=108.1

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceee--ccccccCCCCCeEEEecC-----CCCeEEEEecCCCceeeecc
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYS--SYQASFNSNASEFYLDVD-----EDWELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s--~~~~~~~~~~~~~~i~~~-----~DG~lY~~~~~~G~l~~~~~  120 (613)
                      ...||++|.||+|||||++||+++|++..+.+-..  ...++... .+.+|++.+     -.|.|+++|..||++ .|.|
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~-~W~~  198 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQ-VWRA  198 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCE-EEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcE-EEEe
Confidence            45799999999999999999999999986542111  11112111 124555543     259999999999999 8876


Q ss_pred             cHHH--------------------------------------HhhhCceee-cCCcEEEEee----------------cc
Q 007199          121 SAEE--------------------------------------YIRRMPYIS-KDGGVTLGAM----------------KT  145 (613)
Q Consensus       121 ~~~~--------------------------------------~v~~sP~~~-~dg~v~~Gs~----------------~~  145 (613)
                      .+..                                      -+.+++.+. +.+.+|+|..                .+
T Consensus       199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~  278 (596)
T d1w6sa_         199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (596)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence            4321                                      123344443 3467898854                45


Q ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEE
Q 007199          146 SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       146 ~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~W  225 (613)
                      +++|||++||+++|.|.....-    .++-+    |+..  .-+.+....+- .....|+....++.++++|+++|+++|
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D----~Wd~d----~~~~--~~l~d~~~~~G-~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHD----EWDYA----GVNV--MMLSEQKDKDG-KARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTC----SSCCC----CCCC--CEEEEEECTTS-CEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccceecc----ccCCc----cccc--eeeeecccccc-ccccceeccccccceeeecCCCCceee
Confidence            7999999999999999864210    11110    1100  00111000000 012367778888999999999999999


Q ss_pred             EEEece
Q 007199          226 NVAYAD  231 (613)
Q Consensus       226 n~t~~~  231 (613)
                      -..+..
T Consensus       348 ~~~~~~  353 (596)
T d1w6sa_         348 ANKLDD  353 (596)
T ss_dssp             EEESST
T ss_pred             eccccc
Confidence            776543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.21  E-value=3.5e-11  Score=131.76  Aligned_cols=174  Identities=14%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             CCCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeec--cccccCCCCCeEEEecC-----CCCeEEEEecCCCcee
Q 007199           44 LPPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSS--YQASFNSNASEFYLDVD-----EDWELYFHSKRFGKMK  116 (613)
Q Consensus        44 ~~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~--~~~~~~~~~~~~~i~~~-----~DG~lY~~~~~~G~l~  116 (613)
                      .+..++.||+++.||.|||||+.||+++|++....+....  ...+... .+.++++..     ..|.|+++|.+||++ 
T Consensus       113 ~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~-  190 (560)
T d1kv9a2         113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKL-  190 (560)
T ss_dssp             CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCE-
T ss_pred             cceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeee-cCcccccccceeccccceEEEEECCCceE-
Confidence            3346789999999999999999999999999875432211  1111111 123444322     248899999999999 


Q ss_pred             eecccHH-------------------------------HHhhhCceeec-CCcEEEEee-------------------cc
Q 007199          117 KLSSSAE-------------------------------EYIRRMPYISK-DGGVTLGAM-------------------KT  145 (613)
Q Consensus       117 ~~~~~~~-------------------------------~~v~~sP~~~~-dg~v~~Gs~-------------------~~  145 (613)
                      .|.+.+-                               .-+.+++.+.. .+.+|+|..                   .+
T Consensus       191 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~  270 (560)
T d1kv9a2         191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (560)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccce
Confidence            8888642                               11334444432 356777542                   46


Q ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEE
Q 007199          146 SVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLW  225 (613)
Q Consensus       146 ~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~W  225 (613)
                      +++|||++||+++|.|.....    ..++-+.    +..  ..+.+... + ......|+.+..++.++++|++||+++|
T Consensus       271 sivAld~~tG~~~W~~Q~~~~----D~wd~d~----~~~--~~l~~~~~-~-g~~~~~v~~~~k~G~~~~lDr~tG~~i~  338 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPG----DSWDFTA----TQQ--ITLAELNI-D-GKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTT----CCSCCCC----CSC--EEEEEEEE-T-TEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             eeEEecCCccceeEEEecccc----ccccccc----cce--eeeeeeec-C-CceeeeeeecCccceEEEEecCCCcccc
Confidence            799999999999999986431    0111111    100  00111000 0 0012367788899999999999999999


Q ss_pred             EEEece
Q 007199          226 NVAYAD  231 (613)
Q Consensus       226 n~t~~~  231 (613)
                      ...+..
T Consensus       339 ~~~~~~  344 (560)
T d1kv9a2         339 AEKFGK  344 (560)
T ss_dssp             EEESSC
T ss_pred             cccccc
Confidence            887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.13  E-value=1.3e-10  Score=127.77  Aligned_cols=146  Identities=18%  Similarity=0.238  Sum_probs=95.0

Q ss_pred             CCCCeeeEEeeCCCceeeccc-cccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH---------HhhhCceeec
Q 007199           65 TKLGKIRWSFGTGRPIYSSYQ-ASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE---------YIRRMPYISK  134 (613)
Q Consensus        65 ~~tG~~~W~~~~~~~i~s~~~-~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~---------~v~~sP~~~~  134 (613)
                      ...=++.|+|.++.......+ .|+-.+ +.+|+..+ +|.|||+|+.||++ +|.|..+.         .+...+.+. 
T Consensus        41 v~~L~~aW~~~~g~~~~~~~~stPiv~~-g~vy~~t~-~~~v~AlDa~TG~~-lW~~~~~~~~~~~~~~~~~~rg~a~~-  116 (582)
T d1flga_          41 VFKLTPAWSYSFGDEKQRGQESQAIVSD-GVIYVTAS-YSRLFALDAKTGKR-LWTYNHRLPDDIRPCCDVVNRGAAIY-  116 (582)
T ss_dssp             GGGCEEEEEEECCTTCCSCCCCCCEEET-TEEEEEET-TTEEEEEESSSCCE-EEEEECCCCTTCCCSSCSCCCCCEEE-
T ss_pred             hhhceEEEEEeCCCCCCCCcccCCEEEC-CEEEEeCC-CCeEEEEeCCCCCe-EEEEcCCCCCccccccccccCCceEe-
Confidence            344578899998754322111 122222 35666655 99999999999999 99986542         333456666 


Q ss_pred             CCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEe------
Q 007199          135 DGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMR------  208 (613)
Q Consensus       135 dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr------  208 (613)
                      ++.+|+|+.++.+||||++||+++|+....+.....           .......+..+..     ....+++..      
T Consensus       117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~-----------~~~~~p~~~~~~~-----~~~~~~i~g~~~~~~  180 (582)
T d1flga_         117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGY-----------TMTGAPTIVKDGK-----TGKVLLIHGSSGDEF  180 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTC-----------BCCSCCEEEECTT-----TCCEEEEECCBCGGG
T ss_pred             CCceEEecCCCeEEEecccccceeeeecccCCCccc-----------eeecCceEecCCc-----EeEEEEEeCcccccc
Confidence            778999999999999999999999999875431100           0001111111111     122444432      


Q ss_pred             -eeeEEEEEeCCCCceEEEEEec
Q 007199          209 -TDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       209 -~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                       ..+.|+|+|++||+++|.+...
T Consensus       181 ~~~g~v~a~d~~tG~~~W~~~~~  203 (582)
T d1flga_         181 GVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             CCBCEEEEECTTTCCEEEEEESS
T ss_pred             ccccceEEecCCCCcEEEEEecc
Confidence             3568999999999999998653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.13  E-value=7.6e-11  Score=129.42  Aligned_cols=135  Identities=13%  Similarity=0.158  Sum_probs=94.7

Q ss_pred             eeeEEeeCCCc--eeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-----------HhhhCceeecC
Q 007199           69 KIRWSFGTGRP--IYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-----------YIRRMPYISKD  135 (613)
Q Consensus        69 ~~~W~~~~~~~--i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-----------~v~~sP~~~~d  135 (613)
                      ++.|+|+++..  +.++   |+-.+ +.+|+. +.+|.|||+|+.||++ +|.|+.+.           .+...+.+. +
T Consensus        56 ~~aW~~~~~~~~~~~st---Piv~~-g~vyv~-t~~~~v~AlDa~TG~~-~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~  128 (573)
T d1kb0a2          56 GLAWSYNLESTRGVEAT---PVVVD-GIMYVS-ASWSVVHAIDTRTGNR-IWTYDPQIDRSTGFKGCCDVVNRGVALW-K  128 (573)
T ss_dssp             EEEEEEECCCCSCCCCC---CEEET-TEEEEE-CGGGCEEEEETTTTEE-EEEECCCCCGGGGGGSSSCSCCCCCEEE-T
T ss_pred             eEEEEEECCCCCCcEEC---CEEEC-CEEEEE-CCCCeEEEEeCCCCCe-EEEeCCCCCcccccccccccccccceEE-C
Confidence            56899998643  4443   22222 245655 4599999999999999 99986432           233455666 7


Q ss_pred             CcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeee-----
Q 007199          136 GGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTD-----  210 (613)
Q Consensus       136 g~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d-----  210 (613)
                      +.||+++.++.+||||++||+++|++......... .       .         ....   |...++.||+|...     
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~-~-------~---------~~~~---p~v~~~~vivg~~~~~~~~  188 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS-L-------T---------ITGA---PRVFKGKVIIGNGGAEYGV  188 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS-C-------B---------CCSC---CEEETTEEEECCBCTTTCC
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcce-E-------E---------eecc---eEEEeccEEEeeccccccc
Confidence            88999999999999999999999999865422100 0       0         0000   11246789998653     


Q ss_pred             -eEEEEEeCCCCceEEEEEec
Q 007199          211 -YVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       211 -~~l~a~d~~~G~~~Wn~t~~  230 (613)
                       +.|+|+|++||+++|.+...
T Consensus       189 ~G~v~a~D~~TG~~~W~~~t~  209 (573)
T d1kb0a2         189 RGYITAYDAETGERKWRWFSV  209 (573)
T ss_dssp             BCEEEEEETTTCCEEEEEESS
T ss_pred             cceEEEEecCCccceeeeeec
Confidence             58999999999999998664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=8.5e-06  Score=79.44  Aligned_cols=157  Identities=13%  Similarity=0.047  Sum_probs=104.2

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhh-
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIR-  127 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~-  127 (613)
                      +.+++++.||+|+.+|..|+++++++.....-..........|+..+|+.++.||.|+.+|..+|++ .+.+....... 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            5689999999999999999999999975322111111123334446778888899999999999998 55554432211 


Q ss_pred             ----hCceeecCC-cEEEEe------------ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccc
Q 007199          128 ----RMPYISKDG-GVTLGA------------MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELV  190 (613)
Q Consensus       128 ----~sP~~~~dg-~v~~Gs------------~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (613)
                          ..-.++.|| .+|++.            .+..+...|..+|+.++.+........-                  .+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------------~~  142 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITML------------------AW  142 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCE------------------EE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEE------------------EE
Confidence                112244454 466655            3567899999999999999865432100                  11


Q ss_pred             ccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEeceee
Q 007199          191 ESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       191 ~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                      ++       ....+|++..|  ++.+|..+++..+++....+.
T Consensus       143 s~-------dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~  176 (337)
T d1pbyb_         143 AR-------DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             CT-------TSSCEEEESSS--EEEEETTTTEEEEEECSTTTT
T ss_pred             cC-------CCCEEEEEcCC--cceeeeecCcEEEEeecCCcc
Confidence            11       12367777655  466899999999988776543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.8e-05  Score=76.04  Aligned_cols=113  Identities=11%  Similarity=-0.031  Sum_probs=82.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      .+..+++|+.||.++..|.++|+.+..+....+|.+-  . ...+ ...++.++.||.++.+|..++.... ...-...|
T Consensus       194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l--~-~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i  268 (337)
T d1gxra_         194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL--G-YCPT-GEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCV  268 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE--E-ECTT-SSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCE
T ss_pred             cccccccccccccccccccccceeecccccccceEEE--E-Eccc-ccccceecccccccccccccccccc-cccccccc
Confidence            5678999999999999999999999999888877654  1 1112 2455666679999999999887732 22222222


Q ss_pred             hhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCC
Q 007199          127 RRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       127 ~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      . +-.++.|| .+++|+.|++++.-|..+|+.+..+...+
T Consensus       269 ~-~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  307 (337)
T d1gxra_         269 L-SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS  307 (337)
T ss_dssp             E-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             c-eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCC
Confidence            2 22344466 46679999999999999999998886443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=7e-05  Score=72.20  Aligned_cols=155  Identities=12%  Similarity=0.105  Sum_probs=102.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ....+++++.||.++..|...++.+.++.........  ...  + ...++.++.||.++.+|..+++. ...+......
T Consensus       146 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~--~-~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~  219 (342)
T d2ovrb2         146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQF--D-GIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSL  219 (342)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEE--C-SSEEEEEETTSCEEEEETTTCCE-EEEECCCCSC
T ss_pred             ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccC--C-CCEEEEEeCCCeEEEeeccccee-eeEecccccc
Confidence            4456777788888888888888877777543221111  001  1 23566777899999999998887 4444443322


Q ss_pred             hhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEE
Q 007199          127 RRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYI  206 (613)
Q Consensus       127 ~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  206 (613)
                      ..+-... +..+++|+.|++++..|..+++....+.........          +      .++..       .++.++.
T Consensus       220 v~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------~------~~~~~-------~~~~~~s  275 (342)
T d2ovrb2         220 TSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA----------V------TCLQF-------NKNFVIT  275 (342)
T ss_dssp             EEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC----------E------EEEEE-------CSSEEEE
T ss_pred             eeEEecC-CCEEEEEcCCCEEEEEecccccccccccccceeeec----------e------eeccc-------CCCeeEE
Confidence            2222334 667889999999999999999998888643321100          0      01111       1347888


Q ss_pred             EeeeeEEEEEeCCCCceEEEEEece
Q 007199          207 MRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       207 gr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      |..|++|+.+|.++|+.+.++...+
T Consensus       276 ~s~Dg~i~iwd~~tg~~i~~~~~~~  300 (342)
T d2ovrb2         276 SSDDGTVKLWDLKTGEFIRNLVTLE  300 (342)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEECT
T ss_pred             EcCCCEEEEEECCCCCEEEEEeccc
Confidence            9999999999999999988876543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=8.4e-05  Score=73.15  Aligned_cols=142  Identities=11%  Similarity=0.104  Sum_probs=95.4

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh--
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI--  126 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v--  126 (613)
                      +++.|+.||.|+..|.++++....+.. ..+|.+-.   ...+ ..+++.++.||.++.+|..++.. ...+......  
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~---~~p~-~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~  235 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR---YNPD-GSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNV  235 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE---ECTT-SSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSC
T ss_pred             eecccccccccccccccccccccccccccccccccc---cCcc-ccccccccccccccccccccccc-cccccccccccc
Confidence            566789999999999999999999876 34554431   1112 24666677799999999988876 4444332211  


Q ss_pred             -hh----CceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          127 -RR----MPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       127 -~~----sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                       +.    +-.++.|| .+++|+.|++++.-|..||+++.++.........                  ...-     .+.
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~------------------~~~~-----~~~  292 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ------------------QLGI-----IWT  292 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC------------------EEEE-----EEC
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccce------------------EEEE-----Eec
Confidence             11    12334344 5678999999999999999999988765432100                  0000     012


Q ss_pred             ccEEEEEeeeeEEEEEeCC
Q 007199          201 RQLVYIMRTDYVLQSTSQD  219 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~  219 (613)
                      ++.++.+..|+.|+.+|++
T Consensus       293 ~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSCEEEEETTCCEEEEETT
T ss_pred             CCEEEEEECCCEEEEEeCC
Confidence            4578889999999999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=0.00014  Score=70.50  Aligned_cols=105  Identities=13%  Similarity=0.183  Sum_probs=78.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..+++++.||+|+..|..+|+.++.++... +|.+-   ..+   ..+++.++.||.++.+|..++.. ++.+.....
T Consensus       212 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~---~~~---~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  284 (355)
T d1nexb2         212 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL---RLS---DKFLVSAAADGSIRGWDANDYSR-KFSYHHTNL  284 (355)
T ss_dssp             TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE---EEC---SSEEEEECTTSEEEEEETTTCCE-EEEEECTTC
T ss_pred             cceeeecccccceEEeeecccccccccccccccccccc---ccc---cceeeeeecccccccccccccce-ecccccCCc
Confidence            67889999999999999999999999997533 33221   111   23667777899999999998876 555543332


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVD  159 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~  159 (613)
                      . ..-+...|+.+++++.|++++.-|.+||+++.
T Consensus       285 ~-~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         285 S-AITTFYVSDNILVSGSENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             C-CCCEEEECSSEEEEEETTEEEEEETTTCCBCC
T ss_pred             e-EEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            2 33344557778888889999999999999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=0.00019  Score=69.42  Aligned_cols=146  Identities=12%  Similarity=0.118  Sum_probs=100.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.++.+..|+.|+..|..+++.+..+.... .+.+. .  ...+ ...++.++.||.++.+|..+|.. ...+.....
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~  244 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST-I--YDHE-RKRCISASMDTTIRIWDLENGEL-MYTLQGHTA  244 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-E--EETT-TTEEEEEETTSCEEEEETTTCCE-EEEECCCSS
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccccc-c--cccc-ceeeecccccceEEeeecccccc-ccccccccc
Confidence            45788999999999999999999999886433 23222 1  1111 23566677799999999999888 555543321


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      .-.+-..+ +..+++|+.|++++.-|..++.....+.......           .+       ...        .++.++
T Consensus       245 ~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~-------~~~--------~~~~~l  297 (355)
T d1nexb2         245 LVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA-----------IT-------TFY--------VSDNIL  297 (355)
T ss_dssp             CCCEEEEC-SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCC-----------CC-------EEE--------ECSSEE
T ss_pred             cccccccc-cceeeeeecccccccccccccceecccccCCceE-----------EE-------EEc--------CCCCEE
Confidence            11222233 5678899999999999999999887776443211           00       011        234667


Q ss_pred             EEeeeeEEEEEeCCCCceE
Q 007199          206 IMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~  224 (613)
                      ++..|+.|+.+|.++|+.+
T Consensus       298 ~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         298 VSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEEETTEEEEEETTTCCBC
T ss_pred             EEEeCCEEEEEECCCCCEE
Confidence            7778999999999988764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.0003  Score=69.20  Aligned_cols=151  Identities=11%  Similarity=0.052  Sum_probs=102.4

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..++.++.|+.|+..|..+++....+.. ..++.+-   ....+. ..++.++.||.++.+|.++|+. ...+.....
T Consensus       152 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l---~~s~~~-~~~~~~~~d~~v~i~d~~~~~~-~~~~~~~~~  226 (337)
T d1gxra_         152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI---DISNDG-TKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQ  226 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTTS-SEEEEEETTSEEEEEETTTTEE-EEEEECSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccc---cccccc-ccccccccccccccccccccee-ecccccccc
Confidence            567788899999999999999999888764 3345432   112222 3556667799999999998877 444444333


Q ss_pred             hhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      |.+ -.++.++ .+++|+.++.++..|..+++....+...+.+.           .+       .++|       .+..+
T Consensus       227 i~~-l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~-----------~v-------~~s~-------~g~~l  280 (337)
T d1gxra_         227 IFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-----------SL-------KFAY-------CGKWF  280 (337)
T ss_dssp             EEE-EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE-----------EE-------EECT-------TSSEE
T ss_pred             eEE-EEEcccccccceeccccccccccccccccccccccccccc-----------eE-------EECC-------CCCEE
Confidence            322 1223344 56789999999999999999876543322211           00       1111       13477


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +.|..|+.|+.+|..+|+.+....
T Consensus       281 ~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEcc
Confidence            889999999999999999887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.58  E-value=0.00024  Score=68.89  Aligned_cols=161  Identities=11%  Similarity=0.020  Sum_probs=95.2

Q ss_pred             CCCCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           45 PPEPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        45 ~~~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      +..+..+++++.|++|+.+|..||+++.+++...... +....+..|+..+|+.+..|+.++.+|..+|++ ...+....
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~-p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~~~   82 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG-PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLSS   82 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCS-SCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESCC
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCC-cceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecccc
Confidence            3467789999999999999999999999887432111 001123344456788888999999999999988 43333221


Q ss_pred             Hh---h---hCceeecCC-cEEEEee------------cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCC
Q 007199          125 YI---R---RMPYISKDG-GVTLGAM------------KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDG  185 (613)
Q Consensus       125 ~v---~---~sP~~~~dg-~v~~Gs~------------~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (613)
                      ..   .   .+..++.|| .+|+++.            +..+..+|..+|+..........    |     ....+    
T Consensus        83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~-----~~~~~----  149 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----P-----RQVYL----  149 (346)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----C-----SSCCC----
T ss_pred             cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec----c-----CceEE----
Confidence            11   1   123356676 4666654            44556666666665433321110    0     00000    


Q ss_pred             cccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEecee
Q 007199          186 YEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                         ...       ..++.+++..  ..+..+|..+|+...++....+
T Consensus       150 ---~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  184 (346)
T d1jmxb_         150 ---MRA-------ADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNW  184 (346)
T ss_dssp             ---EEE-------CTTSCEEEES--SSEEEECTTTCCEEEEECSTTC
T ss_pred             ---EEe-------cCCCEEEEeC--CcceEEEccCCCEEEEEecCCC
Confidence               000       0134566644  4467788888888877765543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.0004  Score=65.69  Aligned_cols=154  Identities=14%  Similarity=0.068  Sum_probs=100.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH--
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE--  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~--  124 (613)
                      .++.++.++.||.+...|..+|+...++.........  .....+ ..+++.++.||.++.++..+++. ...+....  
T Consensus       112 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~  187 (317)
T d1vyhc1         112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM--VRPNQD-GTLIASCSNDQTVRVWVVATKEC-KAELREHRHV  187 (317)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE--EEECTT-SSEEEEEETTSCEEEEETTTCCE-EEEECCCSSC
T ss_pred             CCceEEeeccCcceeEeecccceeeeEEccCCCccee--eecccC-CCEEEEEeCCCeEEEEeecccee-eEEEecCCCC
Confidence            5678899999999999999999999998754332222  111222 24666777799999999988766 33322110  


Q ss_pred             -------------Hhhh------CceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCC
Q 007199          125 -------------YIRR------MPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDG  185 (613)
Q Consensus       125 -------------~v~~------sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (613)
                                   .+..      .........+++|+.|++++..|..+|+.+.++.......    .     ..     
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v----~-----~~-----  253 (317)
T d1vyhc1         188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV----R-----GV-----  253 (317)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----E-----EE-----
T ss_pred             ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCE----E-----EE-----
Confidence                         0000      0001112347789999999999999999999886432110    0     00     


Q ss_pred             cccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          186 YEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                         ...|       ....|+.|..|+.|+.+|..+|+.+..+.
T Consensus       254 ---~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         254 ---LFHS-------GGKFILSCADDKTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             ---EECS-------SSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             ---EECC-------CCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence               1111       13367889999999999999998877664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0011  Score=63.34  Aligned_cols=112  Identities=14%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY-  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~-  125 (613)
                      .+..++.|+.||+|+..|..+++.+.++...........  ..   ..+++.++.||.++.+|..+++. ...+..... 
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~---~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~  259 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME--LK---DNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKH  259 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE--EE---TTEEEEEETTSCEEEEETTTCCE-EEEECSTTSC
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe--cC---CCEEEEEcCCCEEEEEecccccc-ccccccccee
Confidence            567899999999999999999999999876554433311  11   13677777899999999988776 333332211 


Q ss_pred             hhhCceeec-CCcEEEEeecceEEEEECCCCcEEEEEecC
Q 007199          126 IRRMPYISK-DGGVTLGAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       126 v~~sP~~~~-dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      ....-++.- ...+++|+.|+++..-|.+||+.++++...
T Consensus       260 ~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~  299 (342)
T d2ovrb2         260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL  299 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred             eeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecc
Confidence            111111222 345678999999999999999999998653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.44  E-value=0.00049  Score=65.36  Aligned_cols=151  Identities=13%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             EEEEE-ecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhh
Q 007199           50 VALVA-ALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRR  128 (613)
Q Consensus        50 ~v~v~-t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~  128 (613)
                      .+||+ +.||+|.-+|..||+++.+++.+....+-   ....++..+|+.++.|+.++.+|..+++. ...+....-.. 
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~v---a~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~~~~-   77 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGA---VISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGSSPQ-   77 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE---EECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSEE-
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCceEE---EEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeecccccc-
Confidence            46775 58899999999999999999987643332   23334445788888899999999999887 44443332221 


Q ss_pred             CceeecCCc-EEE-EeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE-E
Q 007199          129 MPYISKDGG-VTL-GAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV-Y  205 (613)
Q Consensus       129 sP~~~~dg~-v~~-Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~  205 (613)
                      .-.++.||. +++ +..+..++..|..+|+..+.........            +      ..+++.       ...+ +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------~~~~~d-------g~~~~~  132 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL------------G------LALSPD-------GKKLYV  132 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE------------E------EEECTT-------SSEEEE
T ss_pred             ccccccccccccccccccceeeecccccceeeeeccccccce------------E------EEeecC-------CCeeee
Confidence            123444664 444 5567789999999999999887543211            0      011111       1234 4


Q ss_pred             EEeeeeEEEEEeCCCCceEEEEEec
Q 007199          206 IMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      .+..+..++.++..++.....+...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2         133 TNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECC
T ss_pred             eeccccceeeeeccccceeeecccC
Confidence            4666788999999988877776544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=0.00085  Score=65.60  Aligned_cols=162  Identities=11%  Similarity=0.006  Sum_probs=100.6

Q ss_pred             CCCEEEEEec--CCcEEEEeCCCCeeeEEeeCC-CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH
Q 007199           47 EPDVALVAAL--DGTIHLVDTKLGKIRWSFGTG-RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE  123 (613)
Q Consensus        47 ~~~~v~v~t~--dG~l~ald~~tG~~~W~~~~~-~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~  123 (613)
                      .+..+++++.  |..++..|..+|+..+++... .+|.+-   ....+....++-++.||.++.+|.++++. ...+...
T Consensus       113 d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v---~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~  188 (311)
T d1nr0a1         113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV---DFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEH  188 (311)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE---EECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc---cccccceeeeccccccccccccccccccc-ccccccc
Confidence            4455665654  345777788888888877542 334332   11222234677788899999999998877 4444332


Q ss_pred             -HHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          124 -EYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       124 -~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                       ..|. +-..+.||. +++|+.|+.+...|..+|+..+.+.......  .....    .+.    --.++|       .+
T Consensus       189 ~~~i~-~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~--~~h~~----~V~----~~~~s~-------~~  250 (311)
T d1nr0a1         189 TKFVH-SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN--VAHSG----SVF----GLTWSP-------DG  250 (311)
T ss_dssp             SSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS--CSSSS----CEE----EEEECT-------TS
T ss_pred             ccccc-ccccCcccccccccccccccccccccccccccccccccccc--ccccc----ccc----ccccCC-------CC
Confidence             1221 223333554 5579999999999999999999886543211  00000    000    001111       13


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceEEEEEec
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      ..|+.|..|+.|+.+|..+|+....+...
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            47888999999999999999988766543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.42  E-value=0.00031  Score=67.79  Aligned_cols=111  Identities=17%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      ....++.|+.||.|+..|..+|+.+.++.. ..+|.+-   ....+ ..+++.++.||.++.++...+.. ...+.... 
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v---~~~p~-~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~  269 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI---CFFPN-GNAFATGSDDATCRLFDLRADQE-LMTYSHDNI  269 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEE---EECTT-SSEEEEEETTSCEEEEETTTTEE-EEEECCTTC
T ss_pred             ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEE---EECCC-CCEEEEEeCCCeEEEEeeccccc-ccccccccc
Confidence            567888999999999999999999999975 3455442   11112 24667777899999999987665 33332221 


Q ss_pred             --HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEec
Q 007199          125 --YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       125 --~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~  163 (613)
                        .|. +-.++.|| .+++|+.+++++..|..+|+.+.++..
T Consensus       270 ~~~i~-~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         270 ICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             CSCEE-EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             cCceE-EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence              111 12234455 467899999999999999999998863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0011  Score=61.68  Aligned_cols=153  Identities=10%  Similarity=0.030  Sum_probs=103.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.++.|+.||+|+.-|..+|+.+.++.. ..+|.+-   ..  + ..+++.++.||.++.++..+|.. .........
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v---~~--~-~~~l~s~s~D~~i~~~~~~~~~~-~~~~~~~~~   96 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL---QY--D-ERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCE   96 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE---EC--C-SSEEEEEETTSCEEEEESSSCCE-EEEECCCCS
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeee---ec--c-cceeecccccccccccccccccc-ccccccccc
Confidence            568899999999999999999999999974 3455432   11  1 24677788899999999998877 444444332


Q ss_pred             hhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEE
Q 007199          126 IRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVY  205 (613)
Q Consensus       126 v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (613)
                      ...+. ...++.+..+..++.+...|..++............. .+         +      ....       .....++
T Consensus        97 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------v------~~~~-------~~~~~~~  152 (293)
T d1p22a2          97 AVLHL-RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-AA---------V------NVVD-------FDDKYIV  152 (293)
T ss_dssp             CEEEE-ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-SC---------E------EEEE-------EETTEEE
T ss_pred             ccccc-cccccceeecccccceeEeeccccccccccccccccc-cc---------c------ccce-------ecccccc
Confidence            22222 2335667788888888888888776544443221110 00         0      0000       1234778


Q ss_pred             EEeeeeEEEEEeCCCCceEEEEEec
Q 007199          206 IMRTDYVLQSTSQDSGEVLWNVAYA  230 (613)
Q Consensus       206 igr~d~~l~a~d~~~G~~~Wn~t~~  230 (613)
                      .+..|+.++.+|.++++....+.-.
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~~~  177 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLNGH  177 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECC
T ss_pred             cccCCCceeeecCCCCcEEEEEccc
Confidence            8899999999999999988876543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.0015  Score=61.45  Aligned_cols=153  Identities=11%  Similarity=0.056  Sum_probs=100.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+.+++.|+.||+|+.-|..+|+.+.+++. ..+|.+-   ....+ ..+++....++.++.++...++. ...+.....
T Consensus        28 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  102 (317)
T d1vyhc1          28 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI---SFDHS-GKLLASCSADMTIKLWDFQGFEC-IRTMHGHDH  102 (317)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEE---EECTT-SSEEEEEETTSCCCEEETTSSCE-EECCCCCSS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEE---eeecc-ccccccccccccccccccccccc-ccccccccc
Confidence            567899999999999999999999999974 3345432   11112 23555566688888888877666 333332211


Q ss_pred             hhhCceeec-CCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISK-DGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~-dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      ...+..... +..+++++.++.+...|..+|+....+.......           .+-      ...+       ....+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~-------~~~~l  158 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV-----------RMV------RPNQ-------DGTLI  158 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-----------EEE------EECT-------TSSEE
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc-----------eee------eccc-------CCCEE
Confidence            112222232 3457789999999999999999999886432210           000      0111       13477


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEEE
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +.|..|+.|+.++..+++....+.
T Consensus       159 ~~~~~d~~v~~~~~~~~~~~~~~~  182 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKECKAELR  182 (317)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEeCCCeEEEEeeccceeeEEEe
Confidence            889999999999999988776554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0017  Score=63.46  Aligned_cols=112  Identities=15%  Similarity=0.169  Sum_probs=78.1

Q ss_pred             CEEEEEecCCcEEEEeCCCCeeeEEeeCCC----ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           49 DVALVAALDGTIHLVDTKLGKIRWSFGTGR----PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        49 ~~v~v~t~dG~l~ald~~tG~~~W~~~~~~----~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      ..++.++.||.++..|..+++..-++.+..    +|.+-   ....+...+++.++.||.++.+|.++|+. .-.+....
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v---~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~  248 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV---EFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQ  248 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE---EECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTT
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEe---eeccccceeccccccccceeeeeeccccc-cccccccc
Confidence            457779999999999999999888776532    23322   12222235677777899999999999987 43443222


Q ss_pred             -Hhhh---CceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCC
Q 007199          125 -YIRR---MPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       125 -~v~~---sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                       .+..   ++... || .+.+|+.|+++..-|..+|+.+..+....
T Consensus       249 ~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         249 EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             cccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence             2211   22223 55 56789999999999999999999887544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.0028  Score=62.50  Aligned_cols=166  Identities=13%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHh
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ....+++|+.||.++..|..++.................  .+.+ ..+++.++.||.++.++..+|.. ...+......
T Consensus       174 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~  249 (388)
T d1erja_         174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV--SPGD-GKYIAAGSLDRAVRVWDSETGFL-VERLDSENES  249 (388)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE--CSTT-CCEEEEEETTSCEEEEETTTCCE-EEEEC-----
T ss_pred             ccccccccccceeeeeeeccccccccccccccccccccc--cCCC-CCeEEEEcCCCeEEEeecccCcc-ceeecccccc
Confidence            567899999999999999999999998876655443311  1222 24666777899999999998887 4444332211


Q ss_pred             ---hhCc----eeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          127 ---RRMP----YISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       127 ---~~sP----~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                         ...+    .++.|| .+++|+.|+++...|..+++.............. ..      .....+..-.+.   ..+ 
T Consensus       250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~v~~~~---~s~-  318 (388)
T d1erja_         250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE-VT------YIGHKDFVLSVA---TTQ-  318 (388)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE-EE------EECCSSCEEEEE---ECG-
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccccee-ee------cccccceEEEEE---ECC-
Confidence               1112    233455 4667999999999999988877655432211000 00      000000000000   001 


Q ss_pred             ccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          199 RIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       199 ~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                       .+..|+.|..|+.|+.+|..+|+.+..+.
T Consensus       319 -~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         319 -NDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             -GGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             -CCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence             13478889999999999999999887765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0032  Score=62.04  Aligned_cols=161  Identities=17%  Similarity=0.144  Sum_probs=95.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .+..++.|+.||+|+..|..+|+..+.+.. ..+|....   ...+ ...++.++.||.++.+|..++.. .........
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~---~~~~-~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~  206 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD---YFPS-GDKLVSGSGDRTVRIWDLRTGQC-SLTLSIEDG  206 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE---ECTT-SSEEEEEETTSEEEEEETTTTEE-EEEEECSSC
T ss_pred             CCCcceecccccccccccccccccccccccccccccccc---cccc-cccccccccceeeeeeecccccc-ccccccccc
Confidence            557889999999999999999999998874 34454431   1111 23566677799999999988776 433333322


Q ss_pred             hhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccEE
Q 007199          126 IRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLV  204 (613)
Q Consensus       126 v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (613)
                      .....+...|+ .+++|+.+++++..|..+|+..+++.........  ... ....+       .+++       ....+
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~--h~~-~v~~l-------~~s~-------~~~~l  269 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG--HKD-SVYSV-------VFTR-------DGQSV  269 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC--CSS-CEEEE-------EECT-------TSSEE
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccC--CCC-CEEEE-------EECC-------CCCEE
Confidence            22222223355 4667999999999999999999998654321100  000 00000       0111       13478


Q ss_pred             EEEeeeeEEEEEeCCCCceEEEEEe
Q 007199          205 YIMRTDYVLQSTSQDSGEVLWNVAY  229 (613)
Q Consensus       205 ~igr~d~~l~a~d~~~G~~~Wn~t~  229 (613)
                      +.|..|+.|+.+|..++........
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             EEEETTSEEEEEEC-----------
T ss_pred             EEEECCCcEEEEeccCCcccccccc
Confidence            8899999999999887776655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.02  E-value=0.0047  Score=63.33  Aligned_cols=111  Identities=11%  Similarity=0.067  Sum_probs=80.4

Q ss_pred             EEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeee---cc-cHHHHh
Q 007199           51 ALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKL---SS-SAEEYI  126 (613)
Q Consensus        51 v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~---~~-~~~~~v  126 (613)
                      ++..+.||+|..+|..||+++=+++++..+.+-   .+..|...+|+ .+.||.++.+|..+|+.+..   +. .-+.-+
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v---~fSpDG~~l~~-~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS---RLSASGRYLFV-IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECSSCEEEE---EECTTSCEEEE-EETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEE---EECCCCCEEEE-EcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            467788999999999999999999988755443   22333334554 56799999999988875221   21 112234


Q ss_pred             hhCceeecCCc-EEE-EeecceEEEEECCCCcEEEEEecCC
Q 007199          127 RRMPYISKDGG-VTL-GAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       127 ~~sP~~~~dg~-v~~-Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      ..+|.++-||. +|+ ++.++++..+|..||+++..+....
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~  151 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  151 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC
Confidence            45677777886 554 7789999999999999999887543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.97  E-value=0.0053  Score=57.76  Aligned_cols=155  Identities=10%  Similarity=0.091  Sum_probs=97.2

Q ss_pred             CCCEEEE-EecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALV-AALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v-~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      ....+++ +..|+.++..|..+++....+........-   ....+...+++....++.++..+...+.+ .........
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  201 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI---AVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVKVEAA  201 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEE---EECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSE
T ss_pred             CCCeeeeeeccccceeeeeccccceeeecccCCCceEE---Eeeccccceeeecccccccccccccceee-eecccccCC
Confidence            4455544 445778899999999999988765543222   11223335777777777787777766655 333333322


Q ss_pred             hhhCceeecCC-cEEEEe---ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          126 IRRMPYISKDG-GVTLGA---MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       126 v~~sP~~~~dg-~v~~Gs---~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      . .+.+++.|| .+|++.   .+++++.+|+.||++++.+..+....           .       -.++|.       .
T Consensus       202 ~-~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-----------~-------va~spd-------g  255 (301)
T d1l0qa2         202 P-SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA-----------G-------IAVTPD-------G  255 (301)
T ss_dssp             E-EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEE-----------E-------EEECTT-------S
T ss_pred             c-ceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEE-----------E-------EEEeCC-------C
Confidence            2 223454455 355543   44689999999999999987653211           0       012211       2


Q ss_pred             cEEEEE-eeeeEEEEEeCCCCceEEEEEece
Q 007199          202 QLVYIM-RTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       202 ~~v~ig-r~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      ..||+. +.|+.|+.+|.++|++.=++.++.
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~  286 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTITATMAVGK  286 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEECCCCeEEEEECCCCeEEEEEeCCC
Confidence            367775 557999999999999887776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.96  E-value=0.0031  Score=60.55  Aligned_cols=157  Identities=18%  Similarity=0.105  Sum_probs=91.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccc-------cCCCCCeE---------------EEecCCCCe
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQAS-------FNSNASEF---------------YLDVDEDWE  104 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~-------~~~~~~~~---------------~i~~~~DG~  104 (613)
                      .++.+++.  ++.++.+|..+|+...++..+.........+       .......+               +.....++.
T Consensus       154 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (346)
T d1jmxb_         154 DDGSLYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  231 (346)
T ss_dssp             TTSCEEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCCEEEEe--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence            44555554  3667888999999999987654322211000       00000000               111223556


Q ss_pred             EEEEecCCCceeeecccHH-HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccC
Q 007199          105 LYFHSKRFGKMKKLSSSAE-EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPV  183 (613)
Q Consensus       105 lY~~~~~~G~l~~~~~~~~-~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (613)
                      ++.++..+|......+.-. ..+...-....++.+..+. .+.++.+|..+|+.++.+..+....+              
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~--------------  296 (346)
T d1jmxb_         232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYC--------------  296 (346)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCE--------------
T ss_pred             EEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEE--------------
Confidence            7777777776622221111 1111111123344454444 46899999999999999986643210              


Q ss_pred             CCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          184 DGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                          -.++|.       ...||+|..|+.|+.+|.++++.+.+++...
T Consensus       297 ----va~s~D-------G~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         297 ----VAFDKK-------GDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             ----EEECSS-------SSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             ----EEEcCC-------CCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence                012221       3489999999999999999999999888643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.93  E-value=0.003  Score=60.43  Aligned_cols=116  Identities=10%  Similarity=0.071  Sum_probs=76.6

Q ss_pred             CCCEEEEE-ecCCcEEEEeCCCCeeeEEeeCCCceee---ccccccCCCCCeEEEec-----------CCCCeEEEEecC
Q 007199           47 EPDVALVA-ALDGTIHLVDTKLGKIRWSFGTGRPIYS---SYQASFNSNASEFYLDV-----------DEDWELYFHSKR  111 (613)
Q Consensus        47 ~~~~v~v~-t~dG~l~ald~~tG~~~W~~~~~~~i~s---~~~~~~~~~~~~~~i~~-----------~~DG~lY~~~~~  111 (613)
                      .+..+||+ +.||.|+.+|..||++++++....+...   .....+..+...+|+..           ..++.++.+|..
T Consensus        44 Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~  123 (337)
T d1pbyb_          44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc
Confidence            55677654 6799999999999999999986543221   11122223332333332           247888999999


Q ss_pred             CCceeeecccHHHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCC
Q 007199          112 FGKMKKLSSSAEEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFS  166 (613)
Q Consensus       112 ~G~l~~~~~~~~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~  166 (613)
                      ++.. ...+.....+.. -.++.|| .+|+++.+  .+.+|+.+|++.+.+.....
T Consensus       124 ~~~~-~~~~~~~~~~~~-~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~  175 (337)
T d1pbyb_         124 TLSR-RKAFEAPRQITM-LAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             TTEE-EEEEECCSSCCC-EEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTT
T ss_pred             CCeE-EEeccccCCceE-EEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCc
Confidence            8888 666665544433 3455577 46677654  56789999999999876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.91  E-value=0.0054  Score=62.28  Aligned_cols=113  Identities=14%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             CEEEE-EecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceee---eccc-HH
Q 007199           49 DVALV-AALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKK---LSSS-AE  123 (613)
Q Consensus        49 ~~v~v-~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~---~~~~-~~  123 (613)
                      ++.+| .+.||+|..+|..||+++.+++.+..+.+-   .+..|+..+|+. +.||.+..+|..+|+.+.   ++.. -.
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~v---afSPDGk~l~~~-~~d~~v~vwd~~t~~~~~~~~i~~~~~~  107 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHIS---RMSASGRYLLVI-GRDARIDMIDLWAKEPTKVAEIKIGIEA  107 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEE---EECTTSCEEEEE-ETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEE---EECCCCCEEEEE-eCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence            45444 667899999999999999999988665432   233344455554 569999999999987521   1111 12


Q ss_pred             HHhhhCceeecCCc-EEEEe-ecceEEEEECCCCcEEEEEecCC
Q 007199          124 EYIRRMPYISKDGG-VTLGA-MKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       124 ~~v~~sP~~~~dg~-v~~Gs-~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      .-+..+|.++-||. +|+++ .+.++...|..+|+++.......
T Consensus       108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~  151 (426)
T d1hzua2         108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  151 (426)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC
Confidence            23345777777885 56655 77888889999999998886543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.016  Score=56.14  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=98.4

Q ss_pred             CEEEEEe--cCCcEEEEeCCCCeeeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH--
Q 007199           49 DVALVAA--LDGTIHLVDTKLGKIRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE--  123 (613)
Q Consensus        49 ~~v~v~t--~dG~l~ald~~tG~~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~--  123 (613)
                      ..+++++  .|+.++..+..+|+.++++.. ..+|.+-   ....+....++.++.||.++.++..+++.........  
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~---~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  204 (325)
T d1pgua1         128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC---HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  204 (325)
T ss_dssp             SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEE---EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             CccceeeccccceEEEEeecccccceeeeecccccccc---cccccccceEEEeecccccccccccccccceecccccCC
Confidence            3444444  367899999999999999874 3445432   1122222356677789999999988877633222211  


Q ss_pred             -HHhhhCceeecC-Cc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          124 -EYIRRMPYISKD-GG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       124 -~~v~~sP~~~~d-g~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                       ..|. +-+++-| +. +.+|+.|++++..|.++|+.+.++..........                 ..+....    .
T Consensus       205 ~~~v~-~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~-----------------~~s~~~~----d  262 (325)
T d1pgua1         205 GSFVR-DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG-----------------IFALSWL----D  262 (325)
T ss_dssp             TCCEE-EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC-----------------EEEEEES----S
T ss_pred             CCccE-Eeeeccccceeccccccccceeeeeeccccccccccccccccccc-----------------eeeeecc----C
Confidence             1121 1123323 44 4569999999999999999998886432211000                 0111101    1


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                      ...+..+..|+.|+.+|..+|+.+-.++...
T Consensus       263 g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         263 SQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            2378889999999999999999887776544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.69  E-value=0.0097  Score=58.26  Aligned_cols=164  Identities=11%  Similarity=-0.017  Sum_probs=94.8

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEEeeCCCceeecc--ccccCCCCCeEEEecCCCCeEEEEecCCCcee---eecccHHH
Q 007199           50 VALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSY--QASFNSNASEFYLDVDEDWELYFHSKRFGKMK---KLSSSAEE  124 (613)
Q Consensus        50 ~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~--~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~---~~~~~~~~  124 (613)
                      ..+..+.||+++.+|..+++..|............  ........+..++..+.|+.++.++..++...   .+......
T Consensus       179 ~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  258 (373)
T d2madh_         179 TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCc
Confidence            44567889999999999999999876432111110  00001111235566677899998888766531   12221111


Q ss_pred             H--hhhCc------eeecCC-----------cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCC
Q 007199          125 Y--IRRMP------YISKDG-----------GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDG  185 (613)
Q Consensus       125 ~--v~~sP------~~~~dg-----------~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (613)
                      .  +..+|      ..+.||           .+..+...+++..+|..||+.++....+.....           +    
T Consensus       259 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~-----------~----  323 (373)
T d2madh_         259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDA-----------I----  323 (373)
T ss_pred             EEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeE-----------E----
Confidence            1  11111      112222           223455667889999999999998876543210           0    


Q ss_pred             cccccccccccccccccEEE-EEeeeeEEEEEeCCCCceEEEEEeceeeeeec
Q 007199          186 YEELVESGVGNLKRIRQLVY-IMRTDYVLQSTSQDSGEVLWNVAYADFKAEFR  237 (613)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~-igr~d~~l~a~d~~~G~~~Wn~t~~~~~a~~~  237 (613)
                         .++|..      ...+| -++.|+.|+.+|..+|+++..+.-....+..+
T Consensus       324 ---a~spDG------~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         324 ---SVAQDG------GPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             ---EECCCC------CEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence               111110      11344 47899999999999999999887444444433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.018  Score=52.94  Aligned_cols=149  Identities=9%  Similarity=0.047  Sum_probs=99.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH---
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE---  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~---  123 (613)
                      .++.++.|+.||+|+..|..+|.................   ..  ...++.+..++.+..++..+...........   
T Consensus        64 ~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (293)
T d1p22a2          64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR---FN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  138 (293)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE---CC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred             ccceeeccccccccccccccccccccccccccccccccc---cc--ccceeecccccceeEeeccccccccccccccccc
Confidence            668899999999999999999999998876554433311   11  1244555669999988887655412111111   


Q ss_pred             HHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          124 EYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       124 ~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      ..+. ..... ...++.++.|+++...|..+|+.+..+.......            .       .+.       ..+..
T Consensus       139 ~~v~-~~~~~-~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v------------~-------~~~-------~~~~~  190 (293)
T d1p22a2         139 AAVN-VVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI------------A-------CLQ-------YRDRL  190 (293)
T ss_dssp             SCEE-EEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------E-------EEE-------EETTE
T ss_pred             cccc-cceec-ccccccccCCCceeeecCCCCcEEEEEccccccc------------c-------ccc-------CCCCe
Confidence            1111 11122 4457789999999999999999999886432110            0       011       12347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ++.|..|+.|+.+|..++..+....
T Consensus       191 l~~~~~dg~i~i~d~~~~~~~~~~~  215 (293)
T d1p22a2         191 VVSGSSDNTIRLWDIECGACLRVLE  215 (293)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEecCCCEEEEEecccceeeeeec
Confidence            8889999999999999988876554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.49  E-value=0.0074  Score=57.07  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=69.9

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEe--eCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSF--GTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAE-  123 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~--~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~-  123 (613)
                      .+..+++|+.||.|+..|..+++..-..  .-..+|..-  . ...+ ..+++.++.||.++.+|..++.......... 
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~--~-~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  222 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV--A-FSNN-GAFLVATDQSRKVIPYSVANNFELAHTNSWTF  222 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEE--E-ECTT-SSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--c-cccc-cccccccccccccccccccccccccccccccc
Confidence            5678899999999999999988865432  223445432  1 1112 2456667779999999988776522221111 


Q ss_pred             --HHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEE
Q 007199          124 --EYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNY  161 (613)
Q Consensus       124 --~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~  161 (613)
                        ..|. +-.++.||. +++|+.|++++.-|..+++.....
T Consensus       223 h~~~v~-~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         223 HTAKVA-CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             CSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             cccccc-cccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence              1121 122444664 667999999999999888655444

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.034  Score=55.10  Aligned_cols=123  Identities=8%  Similarity=-0.004  Sum_probs=73.2

Q ss_pred             eEEEecCCCCeEEEEecCCCceeeecccHHHHh--hhCce----eecCCc-EEEEeecce---EEEEECCCCcEEEEEec
Q 007199           94 EFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYI--RRMPY----ISKDGG-VTLGAMKTS---VFLVDVKSGRVVDNYVL  163 (613)
Q Consensus        94 ~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v--~~sP~----~~~dg~-v~~Gs~~~~---~~~vD~~tG~~~~~~~~  163 (613)
                      .+++.++.||.++.+|..+|+. ...+.....+  +..|+    ++-||. +.+|+.|.+   +..-|..+|+.++.+..
T Consensus       196 g~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~  274 (393)
T d1sq9a_         196 GLIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  274 (393)
T ss_dssp             SEEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             CEEEEEeCCCcEEEEeeccccc-ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecc
Confidence            3677788899999999999887 4444332221  12222    334654 557888875   66779999999999875


Q ss_pred             CCCCCCCCCcCCCCCccccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          164 DFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      ............+....+.    --.++|       ....|+-|..|++|+.+|.++|+.+..++
T Consensus       275 ~~~~~~~~~~~~gH~~~V~----~l~fsp-------d~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         275 PTHSSQASLGEFAHSSWVM----SLSFND-------SGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             C--------CCBSBSSCEE----EEEECS-------SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccccceeeeecccCcee----eeccCC-------CCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            4322111110000000000    001111       13477779999999999999999888875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.24  E-value=0.034  Score=52.57  Aligned_cols=154  Identities=15%  Similarity=0.128  Sum_probs=96.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCC-ceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH-
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGR-PIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE-  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~-~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~-  124 (613)
                      .+..+.....|+.....+..+........... ++....    ......+++.+..||.++.+|.++|+. ...+...+ 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~~~h~~  227 (340)
T d1tbga_         153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS----LAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHES  227 (340)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE----ECTTSSEEEEEETTTEEEEEETTTTEE-EEEECCCSS
T ss_pred             cccccccccccccccccccccccccccccccceeEeeec----cccccceeEEeecCceEEEEECCCCcE-EEEEeCCCC
Confidence            44556667777777777777666666554432 222221    111134667777899999999999887 55554321 


Q ss_pred             HhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccccE
Q 007199          125 YIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIRQL  203 (613)
Q Consensus       125 ~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (613)
                      .|. +-+++.|| .+++|+.|++++..|..+++....+.......  +..      .+       .+++       ....
T Consensus       228 ~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~--~i~------~~-------~~s~-------~~~~  284 (340)
T d1tbga_         228 DIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GIT------SV-------SFSK-------SGRL  284 (340)
T ss_dssp             CEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS--CEE------EE-------EECS-------SSCE
T ss_pred             CeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC--ceE------EE-------EECC-------CCCE
Confidence            121 12233355 46679999999999999999988875433211  000      00       1111       1347


Q ss_pred             EEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          204 VYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       204 v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      |+.|..|+.|+.+|..+|+..-.+.
T Consensus       285 l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCEEEEEECCCCcEEEEEc
Confidence            8889999999999999998776553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.11  E-value=0.052  Score=55.09  Aligned_cols=165  Identities=10%  Similarity=-0.024  Sum_probs=100.9

Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCee--eEEeeCCCceeec-cccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           46 PEPDVALVAALDGTIHLVDTKLGKI--RWSFGTGRPIYSS-YQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        46 ~~~~~v~v~t~dG~l~ald~~tG~~--~W~~~~~~~i~s~-~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      +.+..+|+++.||+++..|..||+.  .=+++++..-... .......|...+|+.+..|+.+..+|..+|++.+..-.-
T Consensus        71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            4778999999999999999998874  3345554321111 112233444567888888999999999999874332211


Q ss_pred             HHHhhh-----Cc-----eeecCCcE--EEEeecceEEEEECCCCcE--EEEEecCCCCCCCCCcCCCCCccccCCCccc
Q 007199          123 EEYIRR-----MP-----YISKDGGV--TLGAMKTSVFLVDVKSGRV--VDNYVLDFSASTPGFQSDENKHVVPVDGYEE  188 (613)
Q Consensus       123 ~~~v~~-----sP-----~~~~dg~v--~~Gs~~~~~~~vD~~tG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (613)
                      ...+..     .+     +.+.||..  +..+.++.+..+|..+++.  +|....+....      +            -
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~------~------------~  212 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH------D------------G  212 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE------E------------E
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc------c------------c
Confidence            111111     01     22345533  3455677889999888874  45555443210      0            0


Q ss_pred             ccccccccccccccEEEEEee-eeEEEEEeCCCCceEEEEEeceeeee
Q 007199          189 LVESGVGNLKRIRQLVYIMRT-DYVLQSTSQDSGEVLWNVAYADFKAE  235 (613)
Q Consensus       189 ~~~~~~~~~~~~~~~v~igr~-d~~l~a~d~~~G~~~Wn~t~~~~~a~  235 (613)
                      .++|.       ...+|++.. +..+..+|.++++..|.+..+....+
T Consensus       213 ~~spd-------g~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~  253 (432)
T d1qksa2         213 GLDGS-------HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  253 (432)
T ss_dssp             EECTT-------SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             eECCC-------CCEEEEeccccceEEEeecccceEEEEeccCccccc
Confidence            11111       224566554 46899999999999999988877644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.10  E-value=0.053  Score=52.60  Aligned_cols=155  Identities=11%  Similarity=-0.062  Sum_probs=91.7

Q ss_pred             CCCCCEEEEE-----ecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEe---------cCCCCeEEEEec
Q 007199           45 PPEPDVALVA-----ALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLD---------VDEDWELYFHSK  110 (613)
Q Consensus        45 ~~~~~~v~v~-----t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~---------~~~DG~lY~~~~  110 (613)
                      ++....+|+.     +.++.|+.+|..||++++++..+..-.    .....|+..+|+.         +..|+.+..+|.
T Consensus        29 spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~----~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~  104 (373)
T d2madh_          29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPN----PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCcc----EEEcCCCCEEEEEeecCCcccccccceEEEEEEC
Confidence            3566778775     345689999999999999998654321    1122233334443         345788999999


Q ss_pred             CCCceeeecccHHHHh----hhCc---eeecCCc-EEEEe--ecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCcc
Q 007199          111 RFGKMKKLSSSAEEYI----RRMP---YISKDGG-VTLGA--MKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHV  180 (613)
Q Consensus       111 ~~G~l~~~~~~~~~~v----~~sP---~~~~dg~-v~~Gs--~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~  180 (613)
                      .+|++ ...+..+..-    ...|   .++.||. +|+..  .++.+..+|..+++...........             
T Consensus       105 ~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  170 (373)
T d2madh_         105 VTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCY-------------  170 (373)
T ss_pred             CCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeE-------------
Confidence            99988 5555444321    1111   2333442 34433  3445666677777666555432211             


Q ss_pred             ccCCCcccccccccccccccccEEEEEeeeeEEEEEeCCCCceEEEEEece
Q 007199          181 VPVDGYEELVESGVGNLKRIRQLVYIMRTDYVLQSTSQDSGEVLWNVAYAD  231 (613)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~  231 (613)
                              .+++.      .....+....|+.++.+|..++...|......
T Consensus       171 --------~~s~~------g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~  207 (373)
T d2madh_         171 --------HIHPG------APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM  207 (373)
T ss_pred             --------EEecC------CCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence                    01111      01244557788999999999998888876443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.01  Score=59.16  Aligned_cols=115  Identities=11%  Similarity=0.144  Sum_probs=76.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccc----cccCCCCCeEEEecCCCCe---EEEEecCCCceeeec
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQ----ASFNSNASEFYLDVDEDWE---LYFHSKRFGKMKKLS  119 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~----~~~~~~~~~~~i~~~~DG~---lY~~~~~~G~l~~~~  119 (613)
                      .+++++.|+.||+|+..|..+|+++.+++....+.....    .....+. .+++.++.|++   +..+|..+|.. ...
T Consensus       194 ~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~-~~~  271 (393)
T d1sq9a_         194 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER-IGS  271 (393)
T ss_dssp             TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE-EEE
T ss_pred             CCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-ceeeeecCCCCcceeeeccccccee-eee
Confidence            356888999999999999999999999986544332210    0111122 35666666764   77789999877 444


Q ss_pred             ccHHHHhh-------------hCceeecCC-cEEEEeecceEEEEECCCCcEEEEEec
Q 007199          120 SSAEEYIR-------------RMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVL  163 (613)
Q Consensus       120 ~~~~~~v~-------------~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~  163 (613)
                      ++......             .+-+++.|| .++.|+.|+++..=|.+||+.++++..
T Consensus       272 l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence            43221110             112234465 466799999999999999999999963

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.88  E-value=0.045  Score=51.11  Aligned_cols=81  Identities=10%  Similarity=-0.032  Sum_probs=56.7

Q ss_pred             EEEeeeEeecCceEEEEEEeeCCcEEEEEEeecc---chHHHHHHHHHHHhcCCCCcceeEEEEEEeCCEEEEEecCCCc
Q 007199          475 VVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKT---HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTC  551 (613)
Q Consensus       475 ~~~~~~LG~G~fG~Vyk~~~~~g~~VAVK~l~~~---~~~~~~~Ei~~L~~l~~HpnIV~l~g~~~~~~~~~LV~E~~~G  551 (613)
                      +...+..+-++...||+. ..++..+.+|+....   ....+.+|...|..+-.+--+.+++.++...+..++|||+++|
T Consensus        16 ~~~~~~~~G~s~~~v~rv-~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G   94 (263)
T d1j7la_          16 YRCVKDTEGMSPAKVYKL-VGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADG   94 (263)
T ss_dssp             SEEEECSCCCSSSEEEEE-ECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSS
T ss_pred             eEEEEcCCCCCCCcEEEE-EeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccc
Confidence            444444444455789974 346667888988753   2335778888887664554567888888889999999999997


Q ss_pred             -cHHHH
Q 007199          552 -SLNDL  556 (613)
Q Consensus       552 -sL~~~  556 (613)
                       .+.+.
T Consensus        95 ~~~~~~  100 (263)
T d1j7la_          95 VLCSEE  100 (263)
T ss_dssp             EEHHHH
T ss_pred             cccccc
Confidence             66543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.87  E-value=0.018  Score=55.37  Aligned_cols=112  Identities=11%  Similarity=0.020  Sum_probs=74.8

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCC-eEEEEecCCCceeeecccHHHHh
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDW-ELYFHSKRFGKMKKLSSSAEEYI  126 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG-~lY~~~~~~G~l~~~~~~~~~~v  126 (613)
                      ++..++.+.+|.||..|..+|+++-. .-+..|...   ....|+..+++.+.++| .|+.+|..+|.++++.-.. ..|
T Consensus        14 dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~~~---~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~-~~v   88 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYV---RRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL-GNV   88 (360)
T ss_dssp             GGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEEEE---EECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC-CSE
T ss_pred             CCCEEEEEECCeEEEEECCCCcEEEc-cCCCCEEEE---EECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC-ceE
Confidence            45555667789999999999988753 234445443   12333334555555554 6899999999885543322 122


Q ss_pred             hhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCC
Q 007199          127 RRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       127 ~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                       ....++.|| .+.+++.+..++..|..+|+....+....
T Consensus        89 -~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (360)
T d1k32a3          89 -FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  127 (360)
T ss_dssp             -EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             -Eeeeecccccccceeccccccccccccccceeeeeeccc
Confidence             223456576 46679999999999999999988876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.67  E-value=0.041  Score=52.90  Aligned_cols=116  Identities=10%  Similarity=0.038  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEEe-----cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEec---------CCCCeEEEEe
Q 007199           44 LPPEPDVALVAA-----LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDV---------DEDWELYFHS  109 (613)
Q Consensus        44 ~~~~~~~v~v~t-----~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~---------~~DG~lY~~~  109 (613)
                      +++....+||++     .++.||.+|..||++++++..+..- +   .....|+..+|+..         ..||.|+.+|
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~-~---~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N---PVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E---EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC-c---eEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            456778888875     4567999999999999999866422 1   11233333455543         3589999999


Q ss_pred             cCCCceeeecccHHH----HhhhCc---eeecCC-cEEEEe--ecceEEEEECCCCcEEEEEecC
Q 007199          110 KRFGKMKKLSSSAEE----YIRRMP---YISKDG-GVTLGA--MKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       110 ~~~G~l~~~~~~~~~----~v~~sP---~~~~dg-~v~~Gs--~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      ..+|+. ........    .+...|   .++.|| .+|+.+  .+..++.+|..+|+.+..+...
T Consensus        85 ~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (355)
T d2bbkh_          85 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP  148 (355)
T ss_dssp             TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC
Confidence            999988 33332211    121222   355566 366654  4568899999999999887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.11  Score=49.03  Aligned_cols=110  Identities=13%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             CEEEEEe-cCCcEEEEeCCCC---eeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           49 DVALVAA-LDGTIHLVDTKLG---KIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        49 ~~v~v~t-~dG~l~ald~~tG---~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      -+|||++ .|++||..|..+.   +.+-+++.++.+.+-   .+..|+..+|+.+..||.++.++...+.. ...+....
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~l---a~spDG~~L~v~~~~d~~i~~~~i~~~~~-~~~~~~~~   79 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPM---VVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAES   79 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCE---EECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEE
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEE---EEeCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEeeec
Confidence            3577776 7888888886543   556677776655432   12334446788888899998877654433 22222222


Q ss_pred             HhhhCce---eecCCc-EEEEee-cceEEEEECCCCcEEEEEe
Q 007199          125 YIRRMPY---ISKDGG-VTLGAM-KTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       125 ~v~~sP~---~~~dg~-v~~Gs~-~~~~~~vD~~tG~~~~~~~  162 (613)
                      ....+|+   ++.||. +|+++. +.++...+..++.......
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~  122 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD  122 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc
Confidence            2334454   566775 777764 5566666666666655554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.35  E-value=0.014  Score=57.70  Aligned_cols=161  Identities=9%  Similarity=-0.023  Sum_probs=92.5

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCe--eeEEeeC-CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee-eecccH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGK--IRWSFGT-GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK-KLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~--~~W~~~~-~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~-~~~~~~  122 (613)
                      .+..+.+|+.||.|+..|..+|+  .+..++- .++|.+-   ....+ ..+++.++.||.++.+|..++..+ .+.+.-
T Consensus        18 dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l---~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~   93 (371)
T d1k8kc_          18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV---DWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILR   93 (371)
T ss_dssp             TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEE---EEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEE---EECCC-CCEEEEEECCCeEEEEeeccccccccccccc
Confidence            55678889999999999988886  4555643 3456443   11112 246666778999999999877652 222211


Q ss_pred             -HHHhhhCceeecCC-cEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccccc
Q 007199          123 -EEYIRRMPYISKDG-GVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRI  200 (613)
Q Consensus       123 -~~~v~~sP~~~~dg-~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (613)
                       .+.|.. -.++.|| .+++|+.++++...+..+++..+.+..........+       .+      -..+|       .
T Consensus        94 ~~~~v~~-i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v-------~~------v~~~p-------~  152 (371)
T d1k8kc_          94 INRAARC-VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV-------LS------LDWHP-------N  152 (371)
T ss_dssp             CSSCEEE-EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE-------EE------EEECT-------T
T ss_pred             ccccccc-cccccccccceeecccCcceeeeeeccccccccccccccccccc-------cc------ccccc-------c
Confidence             111211 1123344 577899999877777766666665543211000000       00      00111       1


Q ss_pred             ccEEEEEeeeeEEEEEeCCCCceEEEEEecee
Q 007199          201 RQLVYIMRTDYVLQSTSQDSGEVLWNVAYADF  232 (613)
Q Consensus       201 ~~~v~igr~d~~l~a~d~~~G~~~Wn~t~~~~  232 (613)
                      ...+..|..|+.|+.+|...+..........|
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccc
Confidence            23677799999999998876655444433333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.017  Score=54.31  Aligned_cols=157  Identities=9%  Similarity=-0.042  Sum_probs=91.1

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCee----eEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKI----RWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~----~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~  122 (613)
                      .++.+++|+.||+|+.-|..+++.    +-.+.-..+|.+-  . ...+...+++.++.||.++.++...+.........
T Consensus        22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v--~-f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~   98 (342)
T d1yfqa_          22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC--N-FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN   98 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEE--E-EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC
T ss_pred             CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEE--E-EeCCCCCEEEEcccccceeeeeccccccccccccc
Confidence            567899999999999888655443    2233345566543  1 11112246777778999999999877663332222


Q ss_pred             HHHhh-hCceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          123 EEYIR-RMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       123 ~~~v~-~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      ..... .......+..++.++.++++...|.+++.................  .         .......       ...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~-------~~~  160 (342)
T d1yfqa_          99 EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV--K---------NKIFTMD-------TNS  160 (342)
T ss_dssp             CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS--C---------CCEEEEE-------ECS
T ss_pred             ccccccccccccccccccccccccccceeeccccccceeeecccccccccc--e---------eeeeeee-------ccC
Confidence            21111 111223356677899999999999887766655543221110000  0         0000011       124


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceE
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      +.++.+..|+.++.+|..++...
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~  183 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDD  183 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTC
T ss_pred             CceeeecCCCcEEEEecccCccc
Confidence            47888999999999887766543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.03  E-value=0.062  Score=52.64  Aligned_cols=171  Identities=8%  Similarity=-0.070  Sum_probs=88.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeC---CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCcee-eecccH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGT---GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMK-KLSSSA  122 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~---~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~-~~~~~~  122 (613)
                      .+..++.|+.||+|+.-|..+++..-.+..   ..++.+-   ....+. ..++.++.||.+..++...+... ......
T Consensus        62 ~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i---~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV---RWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE---EECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEECCCeEEEEeeccccccccccccccccccccc---cccccc-ccceeecccCcceeeeeecccccccccccc
Confidence            567888899999999988887765554433   2334332   111122 35666667998777665444331 111111


Q ss_pred             ---HHHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          123 ---EEYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       123 ---~~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                         ...|.+ -.++.||. +.+|+.|+++...|..++...............+.  ..  ......+-...+..-...+ 
T Consensus       138 ~~~~~~v~~-v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~~~s~-  211 (371)
T d1k8kc_         138 KPIRSTVLS-LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF--GE--LMFESSSSCGWVHGVCFSA-  211 (371)
T ss_dssp             TTCCSCEEE-EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT--TC--EEEECCCCSSCEEEEEECS-
T ss_pred             ccccccccc-ccccccccceeccccCcEEEEEeeccCccccccccccccccccc--ee--eeeeccCccCcEEEEEeec-
Confidence               111111 11233564 44699999999888877664433221110000000  00  0000000000000000011 


Q ss_pred             ccccEEEEEeeeeEEEEEeCCCCceEEEEE
Q 007199          199 RIRQLVYIMRTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       199 ~~~~~v~igr~d~~l~a~d~~~G~~~Wn~t  228 (613)
                       ....|+.|..|+.|+.+|..++..+.++.
T Consensus       212 -~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         212 -NGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             -SSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             -ccccccccccCCcceEEeeecccceeeee
Confidence             13478889999999999999888776654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.12  Score=47.96  Aligned_cols=107  Identities=13%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccH--HH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSA--EE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~--~~  124 (613)
                      .++.+++.+.++.++.++..+|+..-+++...+...-     ..+...+.+.+.+++.++.++..+.+. ...+..  ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~  163 (287)
T d1pgua2          90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV-----SLSQNYVAVGLEEGNTIQVFKLSDLEV-SFDLKTPLRA  163 (287)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE-----EECSSEEEEEETTTSCEEEEETTEEEE-EEECSSCCSS
T ss_pred             cCCceEEEeecccceeeeccceeeeeeccccceeeee-----eccCcceeeeccccceeeeeeccccce-eeeeeeccCC
Confidence            5577778888889999999999998888776655332     111124555666555678887765444 222222  11


Q ss_pred             HhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEE
Q 007199          125 YIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDN  160 (613)
Q Consensus       125 ~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~  160 (613)
                      .+ .+.+++.||. +++|+.++.++..|..+|+.+..
T Consensus       164 ~v-~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         164 KP-SYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             CE-EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             ce-eEEEeccCccccccccccccccceeecccccccc
Confidence            12 2233455664 66899999999999999987643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.87  E-value=0.042  Score=52.56  Aligned_cols=111  Identities=14%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             CCCEEEEEecC-C-cEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALD-G-TIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~d-G-~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      ....+++++.| | .|+..|..+|+++=.......+..-   ....+. .+++.++.|+.++.++..+++. ...+....
T Consensus        53 Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~---~~spdg-~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~  127 (360)
T d1k32a3          53 DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM---GVDRNG-KFAVVANDRFEIMTVDLETGKP-TVIERSRE  127 (360)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEE---EECTTS-SEEEEEETTSEEEEEETTTCCE-EEEEECSS
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEee---eecccc-cccceeccccccccccccccce-eeeeeccc
Confidence            44455554444 4 6888899888876222222333322   112222 3566677799999999999888 44555444


Q ss_pred             HhhhCceeecCCcEEE-----------EeecceEEEEECCCCcEEEEEe
Q 007199          125 YIRRMPYISKDGGVTL-----------GAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       125 ~v~~sP~~~~dg~v~~-----------Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      ....++.++.||..++           |..+..++..|..+|+..+...
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~  176 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT  176 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred             ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc
Confidence            4445677777886553           4455678889999888776543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.60  E-value=0.11  Score=51.89  Aligned_cols=117  Identities=8%  Similarity=-0.028  Sum_probs=78.9

Q ss_pred             eEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCceeecCCc-EEEEeecceEEEEECCCCcEEEEEe--cCCCCCCC
Q 007199           94 EFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGG-VTLGAMKTSVFLVDVKSGRVVDNYV--LDFSASTP  170 (613)
Q Consensus        94 ~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~-v~~Gs~~~~~~~vD~~tG~~~~~~~--~~~~~~~~  170 (613)
                      .+++..++||.+..+|..+|++ ...+..+..+. +.+++-||. +|+++.|+++..+|.+||+......  .+....  
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~-~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~--  108 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKI-VKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR--  108 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSE-EEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE--
T ss_pred             EEEEEEcCCCEEEEEECCCCcE-EEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc--
Confidence            4567788899999999999998 55666665443 355777885 6789999999999999998665443  221100  


Q ss_pred             CCcCCCCCccccCCCcccccccccccccccccEEEEEe-eeeEEEEEeCCCCceEEEEEeceee
Q 007199          171 GFQSDENKHVVPVDGYEELVESGVGNLKRIRQLVYIMR-TDYVLQSTSQDSGEVLWNVAYADFK  233 (613)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~igr-~d~~l~a~d~~~G~~~Wn~t~~~~~  233 (613)
                      .                ...+++...   -...++++. .+..+..+|..++.+...+......
T Consensus       109 ~----------------~~~s~~~sp---DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~  153 (426)
T d1hzua2         109 S----------------VESSKFKGY---EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT  153 (426)
T ss_dssp             E----------------EEECCSTTC---TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred             c----------------eEEeeeecC---CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC
Confidence            0                001111100   123566654 7799999999999999887765544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.95  E-value=0.042  Score=52.77  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeee-EEeeCCCcee------ec---cccccCCCCCeEEEecC---------CCCeEEE
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIR-WSFGTGRPIY------SS---YQASFNSNASEFYLDVD---------EDWELYF  107 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~-W~~~~~~~i~------s~---~~~~~~~~~~~~~i~~~---------~DG~lY~  107 (613)
                      .+..+++++.+|++|..|..+|+.. +...+.....      .+   .......+...+|+...         .+..++.
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            5567778899999999999888753 2211111100      00   00111122223443322         2347889


Q ss_pred             EecCCCceeeecccHHHHhhhCceeecCCc--EEE-EeecceEEEEECCCCcEEEEEecC
Q 007199          108 HSKRFGKMKKLSSSAEEYIRRMPYISKDGG--VTL-GAMKTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus       108 ~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~--v~~-Gs~~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      +|..+|+. ...+..+..+ .+..++.||.  +|+ |+.+++++.+|++||+++.++...
T Consensus       285 ~d~~t~~~-~~~~~~~~~~-~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         285 LDAKTGER-LAKFEMGHEI-DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EETTTCCE-EEEEEEEEEE-CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EeCCCCcE-EEEecCCCCE-EEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            99999887 4455544433 2345677885  554 677899999999999999998643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.93  E-value=0.27  Score=45.56  Aligned_cols=144  Identities=13%  Similarity=0.127  Sum_probs=81.7

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeeeEEeeCC--CceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHH
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIRWSFGTG--RPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEE  124 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~W~~~~~--~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~  124 (613)
                      .+..++.|+.||+|+.-|..+|+..-.+..+  .+|.+-   ....++ .++..+ .|+.+..++........... ...
T Consensus        23 dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v---~~~~~g-~~~~~~-~d~~v~~~~~~~~~~~~~~~-~~~   96 (299)
T d1nr0a2          23 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI---KTTSKG-DLFTVS-WDDHLKVVPAGGSGVDSSKA-VAN   96 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE---EECTTS-CEEEEE-TTTEEEEECSSSSSSCTTSC-CEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEE---Eeeccc-eeeccc-ceeeEEEeccCCcccccccc-ccc
Confidence            5678899999999999999999988776432  344332   111222 344444 48999888875433311111 111


Q ss_pred             Hhhh---CceeecCCcEEEEeecceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCcccccccccccccccc
Q 007199          125 YIRR---MPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLKRIR  201 (613)
Q Consensus       125 ~v~~---sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (613)
                      ....   +-.++.||.+.+++.++.+...|.  ++... .......            .+      -.+.|       ..
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~--~~~~~-~~~~~~~------------~~------~~~s~-------~~  148 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSH--GKLTE-VPISYNS------------SC------VALSN-------DK  148 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEET--TEEEE-EECSSCE------------EE------EEECT-------TS
T ss_pred             ccccccccccccccccccccccccccccccc--ccccc-ccccccc------------cc------ccccc-------cc
Confidence            1111   122455787777777777777763  33222 2111110            00      00111       13


Q ss_pred             cEEEEEeeeeEEEEEeCCCCceE
Q 007199          202 QLVYIMRTDYVLQSTSQDSGEVL  224 (613)
Q Consensus       202 ~~v~igr~d~~l~a~d~~~G~~~  224 (613)
                      ..+++|..|+.|+.+|.+++...
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~  171 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVS  171 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEE
T ss_pred             ccccccccccccccccccccccc
Confidence            47889999999999998776543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.084  Score=49.01  Aligned_cols=101  Identities=11%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             CCCEEEEEecCCcEEEEeCCCCeee---EEeeCCCceeec-cccc-----cCCCCCeEEEecCCCCeEEEEecCCCceee
Q 007199           47 EPDVALVAALDGTIHLVDTKLGKIR---WSFGTGRPIYSS-YQAS-----FNSNASEFYLDVDEDWELYFHSKRFGKMKK  117 (613)
Q Consensus        47 ~~~~v~v~t~dG~l~ald~~tG~~~---W~~~~~~~i~s~-~~~~-----~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~  117 (613)
                      .+..+++|+.||.|+..|..+++..   |...++ +|.+- ....     .......+++-++.||.+|.+|..++....
T Consensus       173 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             Cccccccccccccccceeeccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence            6678999999999999999999864   444333 33321 0000     011123577778889999999986644312


Q ss_pred             ecccH-HHHhhhCceeecCCcEEEEeecceEEE
Q 007199          118 LSSSA-EEYIRRMPYISKDGGVTLGAMKTSVFL  149 (613)
Q Consensus       118 ~~~~~-~~~v~~sP~~~~dg~v~~Gs~~~~~~~  149 (613)
                      ..+.. .+.|.+ -....|+.+++++.|+++..
T Consensus       252 ~~~~~h~~~V~~-v~~~~~~~l~s~g~D~~v~i  283 (287)
T d1pgua2         252 KALNAHKDGVNN-LLWETPSTLVSSGADACIKR  283 (287)
T ss_dssp             EETTSSTTCEEE-EEEEETTEEEEEETTSCEEE
T ss_pred             EEeCCCCCCeEE-EEECCCCEEEEEECCCeEEE
Confidence            22222 233422 34455788888888887654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=93.53  E-value=0.17  Score=46.74  Aligned_cols=74  Identities=14%  Similarity=0.012  Sum_probs=53.6

Q ss_pred             eEeecC-ceEEEEEEeeCCcEEEEEEeeccchHHHHHHHHHHHhcCC-CCcceeEEEEEEeCCEEEEEecCCCc-cH
Q 007199          480 EIAKGS-NGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQ-HPNIVRWYGVESDQDFVYLSLERCTC-SL  553 (613)
Q Consensus       480 ~LG~G~-fG~Vyk~~~~~g~~VAVK~l~~~~~~~~~~Ei~~L~~l~~-HpnIV~l~g~~~~~~~~~LV~E~~~G-sL  553 (613)
                      .+..|. -+.||+....++..+.+|.-.......+..|...|..+-. .-.+.+++.+..+.+..++|||+++| ++
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            334444 3678986666677789998776655667888877765522 23467888888888899999999997 54

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=93.17  E-value=0.18  Score=50.48  Aligned_cols=79  Identities=20%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             eeeEeecCceEEEEEE-eeCCcEEEEEEeec------c----chHHHHHHHHHHHhcCCC--CcceeEEEEEEeCCEEEE
Q 007199          478 NKEIAKGSNGTVVLEG-NYEGRSVAVKRLVK------T----HHDVALKEIQNLIASDQH--PNIVRWYGVESDQDFVYL  544 (613)
Q Consensus       478 ~~~LG~G~fG~Vyk~~-~~~g~~VAVK~l~~------~----~~~~~~~Ei~~L~~l~~H--pnIV~l~g~~~~~~~~~L  544 (613)
                      .+.||.|....||+.. ..+++.++||.-..      .    ..+....|.+.|..+..+  ..+++++.+  +.+..++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            5578999999999864 34467899996442      1    223566788777665333  345566644  4556678


Q ss_pred             EecCCCc--cHHHHHH
Q 007199          545 SLERCTC--SLNDLIY  558 (613)
Q Consensus       545 V~E~~~G--sL~~~L~  558 (613)
                      |||+++|  .+...+.
T Consensus       109 vmE~L~~~~~~~~~l~  124 (392)
T d2pula1         109 VMEDLSHLKIARKGLI  124 (392)
T ss_dssp             EECCCTTSEEHHHHHH
T ss_pred             EEeccCCcccchhhhc
Confidence            9999985  4544443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.99  E-value=0.76  Score=42.78  Aligned_cols=68  Identities=10%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             eEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCc---eeecCCcEEEEee--cceEEEEECCCCcEEEEEecCC
Q 007199           94 EFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMP---YISKDGGVTLGAM--KTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus        94 ~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP---~~~~dg~v~~Gs~--~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                      .+|+.....+.+|.+|.. |+. .+.+..+... ..|   ++..+|.||+.-.  ...+...| .+|+.++++.+..
T Consensus       169 ~i~v~d~~~~~V~~~d~~-G~~-~~~~g~~g~~-~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~  241 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYE-GQY-LRQIGGEGIT-NYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV  241 (279)
T ss_dssp             EEEEEEGGGTEEEEEETT-CCE-EEEESCTTTS-CSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS
T ss_pred             eEEeeeccccceeeeecC-Cce-eeeecccccc-cCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC
Confidence            566666667777777764 555 4444332222 224   4666888998643  33566666 5699999887653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=92.93  E-value=0.38  Score=45.59  Aligned_cols=32  Identities=13%  Similarity=0.018  Sum_probs=23.0

Q ss_pred             eeecCCcEEEE-eecceEEEEECCCCcEEEEEe
Q 007199          131 YISKDGGVTLG-AMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       131 ~~~~dg~v~~G-s~~~~~~~vD~~tG~~~~~~~  162 (613)
                      ++..||.+|++ +..+.+|.+|+.+|.......
T Consensus       119 ~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~  151 (302)
T d2p4oa1         119 TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE  151 (302)
T ss_dssp             EESSSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEccCCCEEeeccccccceeeeccCCcceeEec
Confidence            45568888886 467789999998887654443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.74  E-value=0.14  Score=49.98  Aligned_cols=103  Identities=5%  Similarity=-0.232  Sum_probs=68.3

Q ss_pred             CcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEe---------cCCCCeEEEEecCCCceeeecccHHHH---
Q 007199           58 GTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLD---------VDEDWELYFHSKRFGKMKKLSSSAEEY---  125 (613)
Q Consensus        58 G~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~---------~~~DG~lY~~~~~~G~l~~~~~~~~~~---  125 (613)
                      +.||.+|..+|+++=++..+..- ..   .+..|+..+++.         ++.|+.+..+|..+|+. .....++..   
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~-~~---a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~-~~~i~~p~~~~~  120 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS-LA---VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRF  120 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC-EE---EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSC
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC-cc---eECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE-eeeecCCcccee
Confidence            46999999999998877654321 10   112222234433         35688899999999987 443333211   


Q ss_pred             -h---hhCceeecCCc-EEEEe-ecceEEEEECCCCcEEEEEecCC
Q 007199          126 -I---RRMPYISKDGG-VTLGA-MKTSVFLVDVKSGRVVDNYVLDF  165 (613)
Q Consensus       126 -v---~~sP~~~~dg~-v~~Gs-~~~~~~~vD~~tG~~~~~~~~~~  165 (613)
                       +   ....+++.||+ +|++. .+++++.+|+.++++.......+
T Consensus       121 ~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_         121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence             1   12355777884 77776 56899999999999999987654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.68  E-value=0.88  Score=43.00  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=51.7

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHH
Q 007199           47 EPDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEY  125 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~  125 (613)
                      .++.+|+.+ ..|+||.+|..+|+... +..+..+.+-  + ...+ ..+++. ..+ .||.+|..+|+.+.+.-.-...
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~~~~~~~i--~-~~~d-g~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~  100 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASGRKTV-HALPFMGSAL--A-KISD-SKQLIA-SDD-GLFLRDTATGVLTLHAELESDL  100 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEE--E-EEET-TEEEEE-ETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeEEE-EECCCCcEEE--E-EecC-CCEEEE-EeC-ccEEeecccceeeEEeeeecCC
Confidence            456666665 66799999999997762 3333333221  1 1122 234444 434 6999999999985553211111


Q ss_pred             ---hhhCceeecCCcEEEEee
Q 007199          126 ---IRRMPYISKDGGVTLGAM  143 (613)
Q Consensus       126 ---v~~sP~~~~dg~v~~Gs~  143 (613)
                         --....+..+|.+|+|+.
T Consensus       101 ~~~~~nd~~vd~~G~iw~~~~  121 (295)
T d2ghsa1         101 PGNRSNDGRMHPSGALWIGTM  121 (295)
T ss_dssp             TTEEEEEEEECTTSCEEEEEE
T ss_pred             CcccceeeEECCCCCEEEEec
Confidence               011223556889999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.67  E-value=0.24  Score=45.80  Aligned_cols=110  Identities=8%  Similarity=-0.062  Sum_probs=64.0

Q ss_pred             CCEEEEEecCCcEEEEeCCCCeeeEEeeCCCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeec---ccHHH
Q 007199           48 PDVALVAALDGTIHLVDTKLGKIRWSFGTGRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLS---SSAEE  124 (613)
Q Consensus        48 ~~~v~v~t~dG~l~ald~~tG~~~W~~~~~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~---~~~~~  124 (613)
                      +..++.|+.||+|+..|..++......................  ...++.++.|+.+..+|.+++......   .....
T Consensus        69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~  146 (342)
T d1yfqa_          69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             CCEEEEcccccceeeeecccccccccccccccccccccccccc--cccccccccccccceeeccccccceeeeccccccc
Confidence            3478889999999999999988888776543322110010111  235666777999999887544331111   11110


Q ss_pred             HhhhCc--e-eecCCcEEEEeecceEEEEECCCCcEEE
Q 007199          125 YIRRMP--Y-ISKDGGVTLGAMKTSVFLVDVKSGRVVD  159 (613)
Q Consensus       125 ~v~~sP--~-~~~dg~v~~Gs~~~~~~~vD~~tG~~~~  159 (613)
                      ......  . ...+..+++|+.++++...|..+++...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  184 (342)
T d1yfqa_         147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN  184 (342)
T ss_dssp             SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred             ccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence            000000  1 1224457788999999988887776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.17  E-value=0.19  Score=48.76  Aligned_cols=114  Identities=8%  Similarity=-0.091  Sum_probs=71.6

Q ss_pred             CCCCEEEEEec----------CCcEEEEeCCCCeeeEEeeCCCc--eeec---cccccCCCCCeEEEecCCCCeEEEEec
Q 007199           46 PEPDVALVAAL----------DGTIHLVDTKLGKIRWSFGTGRP--IYSS---YQASFNSNASEFYLDVDEDWELYFHSK  110 (613)
Q Consensus        46 ~~~~~v~v~t~----------dG~l~ald~~tG~~~W~~~~~~~--i~s~---~~~~~~~~~~~~~i~~~~DG~lY~~~~  110 (613)
                      ....++++++.          |++|+.+|..||++.+.+.....  ....   ....+..|+..+|+....+|.++.+|.
T Consensus        74 pDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~  153 (368)
T d1mdah_          74 HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV  153 (368)
T ss_dssp             TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred             CCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            36667887653          77899999999999999864321  1111   111233444467777777899999999


Q ss_pred             CCCceeeecccHHHHhhhCceeecCCcEEEEeecceEEEEECCCCcEEEEEe
Q 007199          111 RFGKMKKLSSSAEEYIRRMPYISKDGGVTLGAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       111 ~~G~l~~~~~~~~~~v~~sP~~~~dg~v~~Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      .+++. ......+.-...+|  ......+..+.|+++..++..++.......
T Consensus       154 ~~~~~-~~~~~~~~~~~~~~--~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         154 PGASD-DQLTKSASCFHIHP--GAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             TTTEE-EEEEECSSCCCCEE--EETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             CCCcE-eEEeeccCcceEcc--CCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence            99887 33343332111111  213345667888888888877666555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.48  E-value=0.17  Score=48.24  Aligned_cols=90  Identities=12%  Similarity=-0.019  Sum_probs=61.8

Q ss_pred             EEeCCCCeeeEEeeC---CCceeeccccccCCCCCeEEEecCCCCeEEEEecCCCceeeecccHHHHhhhCceeecCCcE
Q 007199           62 LVDTKLGKIRWSFGT---GRPIYSSYQASFNSNASEFYLDVDEDWELYFHSKRFGKMKKLSSSAEEYIRRMPYISKDGGV  138 (613)
Q Consensus        62 ald~~tG~~~W~~~~---~~~i~s~~~~~~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~~~~~~v~~sP~~~~dg~v  138 (613)
                      .|-+.++|++|.-..   ++|++..     .  .+.+|..+-..+.||.+|+++|....|++.  ..+. +-+...||.+
T Consensus         3 ~~~~~~~~~~~~~~~~LgEgp~wd~-----~--~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~--~~~~-~i~~~~dg~l   72 (295)
T d2ghsa1           3 TVFPFAGRVLDETPMLLGEGPTFDP-----A--SGTAWWFNILERELHELHLASGRKTVHALP--FMGS-ALAKISDSKQ   72 (295)
T ss_dssp             EEECCCCEEEECSCCSBEEEEEEET-----T--TTEEEEEEGGGTEEEEEETTTTEEEEEECS--SCEE-EEEEEETTEE
T ss_pred             cccceeEEEEcCCCCeeeeCCeEEC-----C--CCEEEEEECCCCEEEEEECCCCeEEEEECC--CCcE-EEEEecCCCE
Confidence            355677888886542   4566554     1  124666666789999999999888666553  2232 3334558999


Q ss_pred             EEEeecceEEEEECCCCcEEEEEe
Q 007199          139 TLGAMKTSVFLVDVKSGRVVDNYV  162 (613)
Q Consensus       139 ~~Gs~~~~~~~vD~~tG~~~~~~~  162 (613)
                      ++++. ..++.+|+.||++..-..
T Consensus        73 ~va~~-~gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          73 LIASD-DGLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEET-TEEEEEETTTCCEEEEEC
T ss_pred             EEEEe-CccEEeecccceeeEEee
Confidence            99986 579999999999875443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.78  E-value=1.1  Score=41.48  Aligned_cols=153  Identities=14%  Similarity=0.213  Sum_probs=81.1

Q ss_pred             CCCEEEEEe-cCCcEEEEeCCCCeeeEEeeCCCce----eeccccc-cCCCCCeEEEecCCCCeEEEEecCCCceeeecc
Q 007199           47 EPDVALVAA-LDGTIHLVDTKLGKIRWSFGTGRPI----YSSYQAS-FNSNASEFYLDVDEDWELYFHSKRFGKMKKLSS  120 (613)
Q Consensus        47 ~~~~v~v~t-~dG~l~ald~~tG~~~W~~~~~~~i----~s~~~~~-~~~~~~~~~i~~~~DG~lY~~~~~~G~l~~~~~  120 (613)
                      .++.|||+. .+.+|+-+|.. |+.+|+|.+...-    ..+.... .+.....++...+.++.+..++. +|+. ...+
T Consensus        32 ~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~-~~~~  108 (279)
T d1q7fa_          32 AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQF-VRKF  108 (279)
T ss_dssp             TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCE-EEEE
T ss_pred             CCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cccc-eeec
Confidence            346677774 56788888854 9999999653221    1110011 11222233444445667777765 4666 4444


Q ss_pred             cHHHHhh-hCceeecCCcEEEEee-cceEEEEECCCCcEEEEEecCCCCCCCCCcCCCCCccccCCCccccccccccccc
Q 007199          121 SAEEYIR-RMPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLDFSASTPGFQSDENKHVVPVDGYEELVESGVGNLK  198 (613)
Q Consensus       121 ~~~~~v~-~sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (613)
                      ....+-. ..-++..+|.+|+... ...++.+|+ +|+++.++....... .|.       .+       .++       
T Consensus       109 ~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~-~~~-------~i-------~~d-------  165 (279)
T d1q7fa_         109 GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLE-FPN-------GV-------VVN-------  165 (279)
T ss_dssp             CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCS-SEE-------EE-------EEC-------
T ss_pred             CCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeeccccccccc-ccc-------ee-------eec-------
Confidence            3332110 1123455778887654 345667775 588888886543211 000       00       011       


Q ss_pred             ccccEEEEE-eeeeEEEEEeCCCCceEEEE
Q 007199          199 RIRQLVYIM-RTDYVLQSTSQDSGEVLWNV  227 (613)
Q Consensus       199 ~~~~~v~ig-r~d~~l~a~d~~~G~~~Wn~  227 (613)
                       .++.+|+. .....|+.+|+ +|+.++.+
T Consensus       166 -~~g~i~v~d~~~~~V~~~d~-~G~~~~~~  193 (279)
T d1q7fa_         166 -DKQEIFISDNRAHCVKVFNY-EGQYLRQI  193 (279)
T ss_dssp             -SSSEEEEEEGGGTEEEEEET-TCCEEEEE
T ss_pred             -cceeEEeeeccccceeeeec-CCceeeee
Confidence             13456664 44578899986 57766554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=89.72  E-value=0.076  Score=51.05  Aligned_cols=70  Identities=11%  Similarity=-0.050  Sum_probs=50.4

Q ss_pred             cCcccccccccccccceEEeeccCCCCccccccccccccccCCCCCCCcccCCCCC--CCCCC--CCC-----CCCCCCC
Q 007199          261 IGDVESHLPCHTQMTASVYRLRDNSLPEFLSVIGKVAGWISLPGSSQNSLLGPVDR--NSPLF--LPD-----KVDRPPL  331 (613)
Q Consensus       261 ~g~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~--~~~-----~~~~~~l  331 (613)
                      +|.+| .+..  .+.+.++.+.+|++.|.+|.      .+.+-+.++.|++++|++  .||+.  +.+     +.||..|
T Consensus       234 ~~~~~-~~~~--~~~L~~L~Ls~N~l~g~iP~------~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         234 AFDLG-KVGL--SKNLNGLDLRNNRIYGTLPQ------GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCBGG-GCCC--CTTCCEEECCSSCCEECCCG------GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             ccccc-cccc--ccccccccCccCeecccCCh------HHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence            44444 3444  56778899999999999987      111234577899999988  57752  222     7899999


Q ss_pred             CCCCcccc
Q 007199          332 ALPSTETE  339 (613)
Q Consensus       332 ~~~~~~~~  339 (613)
                      |+.|.++|
T Consensus       305 ~g~plp~c  312 (313)
T d1ogqa_         305 CGSPLPAC  312 (313)
T ss_dssp             ESTTSSCC
T ss_pred             cCCCCCCC
Confidence            99998888

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=88.23  E-value=2  Score=40.67  Aligned_cols=71  Identities=6%  Similarity=0.003  Sum_probs=43.5

Q ss_pred             eEEEecCCCCeEEEEecC-CCceee--ecccHHHHhhh---CceeecCCcEEEEee-cceEEEEECCCCcEEEEEecC
Q 007199           94 EFYLDVDEDWELYFHSKR-FGKMKK--LSSSAEEYIRR---MPYISKDGGVTLGAM-KTSVFLVDVKSGRVVDNYVLD  164 (613)
Q Consensus        94 ~~~i~~~~DG~lY~~~~~-~G~l~~--~~~~~~~~v~~---sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~~~~~~  164 (613)
                      .+|+..+..+.||.++.. .|.+..  ....+...-..   .-++..||.||++.. .+.++.+|+++|+++-.....
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p  266 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred             EEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC
Confidence            367777778888887742 344411  11111111011   234667899999874 567999999999877666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.37  E-value=5.3  Score=37.54  Aligned_cols=27  Identities=19%  Similarity=0.290  Sum_probs=18.5

Q ss_pred             eecCCcEEEEee-------cceEEEEECCCCcEE
Q 007199          132 ISKDGGVTLGAM-------KTSVFLVDVKSGRVV  158 (613)
Q Consensus       132 ~~~dg~v~~Gs~-------~~~~~~vD~~tG~~~  158 (613)
                      +..||.+|++..       .+.+|.+|+..+.+.
T Consensus       137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~  170 (319)
T d2dg1a1         137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT  170 (319)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred             EEeccceeecccccccccCcceeEEEecccceeE
Confidence            556889999853       345888887755543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.23  E-value=2.9  Score=38.07  Aligned_cols=26  Identities=8%  Similarity=0.065  Sum_probs=15.7

Q ss_pred             cEEEEE-eeeeEEEEEeCCCCceEEEEE
Q 007199          202 QLVYIM-RTDYVLQSTSQDSGEVLWNVA  228 (613)
Q Consensus       202 ~~v~ig-r~d~~l~a~d~~~G~~~Wn~t  228 (613)
                      +.+|+. ..+..|+.+|.+ |..++.+.
T Consensus       151 g~~~v~~~~~~~i~~~d~~-~~~~~~~~  177 (260)
T d1rwia_         151 GNVYVTDTDNNRVVKLEAE-SNNQVVLP  177 (260)
T ss_dssp             CCEEEEEGGGTEEEEECTT-TCCEEECC
T ss_pred             CCEeeeccccccccccccc-cceeeeee
Confidence            345654 555778888865 44455443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.77  E-value=2.2  Score=40.39  Aligned_cols=75  Identities=9%  Similarity=0.054  Sum_probs=46.8

Q ss_pred             CCCCCeEEEecCCCCeEEEEecC-CCceeeecccHHHH--hh--h---CceeecCCcEEEEee-cceEEEEECCCCcEEE
Q 007199           89 NSNASEFYLDVDEDWELYFHSKR-FGKMKKLSSSAEEY--IR--R---MPYISKDGGVTLGAM-KTSVFLVDVKSGRVVD  159 (613)
Q Consensus        89 ~~~~~~~~i~~~~DG~lY~~~~~-~G~l~~~~~~~~~~--v~--~---sP~~~~dg~v~~Gs~-~~~~~~vD~~tG~~~~  159 (613)
                      +.+...+|+..+..+.+|.++.. .|.. ..+......  ..  .   .-++..||.||+... .+.+..+|+ +|+++.
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~-~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVT-IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSS-EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             ccccceEEEecccCCceEEEEEcCCCce-eccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence            33444678888888888888753 2332 222111100  00  1   124667899999765 578999997 599999


Q ss_pred             EEecCC
Q 007199          160 NYVLDF  165 (613)
Q Consensus       160 ~~~~~~  165 (613)
                      +.....
T Consensus       263 ~i~~P~  268 (319)
T d2dg1a1         263 QILIPG  268 (319)
T ss_dssp             EEECTT
T ss_pred             EEeCCC
Confidence            887653