Citrus Sinensis ID: 007234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610--
Protein Sequence
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATYNGTD
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEcccEEEEEccccEEEEEcccccccEEEEEEccccccEEEEEEcccEEEEEEcccccEEEEEEEEcccccEEEccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccEEEEEEcccccccccccccEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEcccccccHHHHHHHHccccccccccccHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEEEEccccEEEccccEEEcccEEEEHHHEEHEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEccccccEEEEEccccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEcccccccccccccccccccccHHcccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHcccHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHcccccccEcccccEEEEcccHHEccccHHEEcccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAStettslygnrlerehlsvdYTCMKWLSvdrkkkrkLGSSLLVLGTGGGDVLALAVSAGQLkwrlsdchpggvsaisfathgsciysagadgmvceidpltgsllgkfrastkgiscmavsSDGKMLATAAGqlktfncsdhkkmqkfsghpgavrfmtfsdngkYVLSSAVGERYIALWRTdgvkkqsascvlamehpavfmdcrcidnggvddaGLYVLAISETGVCYIWYGQNIEELRNTKATKILsssedvnsksQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNsgedinlncsqdgvllpmsqsllkskrgryVQNRVTALDranaedavlplpkildsydkknrhqnlssdldevmTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSlgilsnkddllsnSALEatlfngidfetnipvKKMRATILSLSPTNACKLLEVLVDLWQsrsykgknILQWIYFILVNhghhllsqeslTPMLSSLYKVFRSASCKKTWSLGHSYfiadtnhllllpdyciqrssfSIFTTIIRTIATYNGTD
Flexible Loop (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIastettslygnrlerehlsvdYTCMKWlsvdrkkkrkLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSssedvnsksQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQsllkskrgrYVQNRVTaldranaedavlplpkildsydkknrhqnlssdldevmtDVVDSESQAKfmeikddkveveadSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATYNGTD
Low Complexity Region (SEG)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDrkkkrklgssllvlgtgggdvlalavSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQrssfsifttiirtiATYNGTD
Disordered region (IsUnstruct)
*******DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR***********************AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK*KRGRYVQNRVTALDRANAEDAVLPLPKIL************************************************VCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATY****
Disordered Region (DISOPRED)
***SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS********QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM**********************ANAEDAVLPL*****************************************************CME******************SALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATYN***
Disordered Region (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL**************TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATYNGTD
Disordered Region (DISPRO)
****NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKN*******DLDEV****VDSE**********************CMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATYNGT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIFTTIIRTIATYNGTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	612	2.2.26 [Sep-21-2011]
Q15061	677	WD repeat-containing prot	yes	no	0.797	0.720	0.223	1e-20
Q6ZQL4	677	WD repeat-containing prot	yes	no	0.800	0.723	0.229	6e-20
Q8YV57	1683	Uncharacterized WD repeat	yes	no	0.354	0.128	0.249	3e-09
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.253	0.235	0.273	5e-09
Q9BVA0	655	Katanin p80 WD40 repeat-c	no	no	0.253	0.236	0.273	5e-09
Q5ZIU8	657	Katanin p80 WD40 repeat-c	no	no	0.281	0.261	0.270	2e-08
Q8TC44	478	POC1 centriolar protein h	no	no	0.183	0.234	0.295	2e-07
Q4V7Y7	655	Katanin p80 WD40 repeat-c	N/A	no	0.285	0.267	0.270	3e-07
A0CH87	403	Lissencephaly-1 homolog 2	N/A	no	0.263	0.399	0.248	3e-07
Q8BHD1	476	POC1 centriolar protein h	no	no	0.186	0.239	0.282	7e-07

>sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 134/600 (22%), Positives = 239/600 (39%), Gaps = 112/600 (18%)

Query: 12  SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
           +FSP +  YFA+ S D  +++W+T   ++  E+   A               HLS   TC
Sbjct: 20  AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSA---------------HLSGTCTC 64

Query: 71  MKWLSV-------DRKKKRK---LGSS----LLVLGTGGGDVLALAVSAGQLKWRL-SDC 115
           + W           ++KKRK   +G S    LL LGT  G +L  +   G+L  +L S  
Sbjct: 65  LAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGG 124

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H   V+ I +     C+YS   D  + E +  T  +  K++     +S + +S DGKML 
Sbjct: 125 HDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLL 184

Query: 176 TAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGER 222
           +A   +K +     +  + F+GH   V  + F+               G Y LS AV +R
Sbjct: 185 SAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDR 244

Query: 223 YIALWRTDGV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281
            + +W+     K++SA     +    V++D    +N    +  + +  +   G  +++  
Sbjct: 245 LLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-- 299

Query: 282 QNIEELRNTKATKILSSSEDVN----SKSQKSATA--AIFAAKLQDIVKPASVHTFVAYG 335
              E + N    K L+S+  +      K +KS      I AA          +   + YG
Sbjct: 300 ---EHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCS----DKMSLLLVYG 352

Query: 336 LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAV 395
              +P+ +++ +NS E                  L++     +     TA+ +       
Sbjct: 353 SWFQPTIERVALNSREP--------------HMCLVRDISNCWAPKVETAITKV------ 392

Query: 396 LPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADS--QTVCM 453
                         R   ++S+   ++  +    +  K    + ++VE +  S    V +
Sbjct: 393 --------------RTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGNEVSI 438

Query: 454 EDRLRSLGILSN---KDDLLSNSALEATLFNGI---DFETNIPVKKMR------ATILSL 501
           E+RL ++ I ++   K+DL +NS     L  G+   DFE    V + R       T+L +
Sbjct: 439 EERLGAMDIDTHKKGKEDLQTNS-FPVLLTQGLESNDFEMLNKVLQTRNVNLIKKTVLRM 497

Query: 502 SPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRS 561
                  LL+ L    Q        ++QW+  +L  H  +L +   L P L +LY++  S
Sbjct: 498 PLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMES 557

Homo sapiens (taxid: 9606)

>sp|Q6ZQL4|WDR43_MOUSE WD repeat-containing protein 43 OS=Mus musculus GN=Wdr43 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 137/596 (22%), Positives = 238/596 (39%), Gaps = 106/596 (17%)

Query: 12  SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
           +FSP +  YFA+ S D ++++W+T   ++  E+   A               HLS   TC
Sbjct: 20  AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSA---------------HLSGTCTC 64

Query: 71  MKWL--------SVDRKKKR------KLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDC 115
           + W         S  RKK++      K  + LL LGT  G +L  +   G+L  +L S  
Sbjct: 65  LAWAPARLQAKESHQRKKRKSEVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGG 124

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H   V+ I +     C+YS   D  + E    T  +  K++     +S + +S DGKML 
Sbjct: 125 HENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLL 184

Query: 176 TAAGQLKTFNCSDHKKMQKFSGHPGAV---RFMTFSDN---------GKYVLSSAVGERY 223
           +A   +K +     +  + F+GH   V   RF T   N         G Y LS AV +R 
Sbjct: 185 SAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRL 244

Query: 224 IALWRTDGV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
           + +W+     K++SA     +    V++D    +N    +  + +  +   G  +++   
Sbjct: 245 LNVWQVRSENKEKSAVMSFTVTDEPVYVDLTLSEN---KEEPVKLAVVCRDGQVHLF--- 298

Query: 283 NIEELRNTKATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338
             E + N    K L+S+  +      K +K     I        +   S+   + YG   
Sbjct: 299 --EHILNGHCKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWF 354

Query: 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVL 396
           +P+ +++ +NS +D ++   +D          + +     V+  +T +     N+E  VL
Sbjct: 355 QPTIERVALNS-KDTHICLERD----------ISNCWAPTVETAITKVKTPVMNSEAKVL 403

Query: 397 PLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDR 456
            +P I   +                   +    +Q K  E K      EA      +E+R
Sbjct: 404 -VPGIPGHH-----------------APIKLPPAQPKEAENKRKLGSTEA-----TIEER 440

Query: 457 LRSLGI--LSNKDDLLSNSALEATLFNGI---DFE------TNIPVKKMRATILSLSPTN 505
           L ++ +     KDDL +NS     L  G+   DFE          V  ++ T+L +    
Sbjct: 441 LGAMDLDRKGRKDDLQTNS-FAVLLTQGLESNDFEILNKVLQTKNVNLIKRTVLRIPLRV 499

Query: 506 ACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRS 561
              LL+ L    Q        ++QW+  +L  H  +L +   L   L +LY++  S
Sbjct: 500 VIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMES 555

Mus musculus (taxid: 10090)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 40/257 (15%)

Query: 12   SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            SF+P  D  A  + D  +KIW    G+         + +T   + N + + + S D   +
Sbjct: 1411 SFTPQGDLIASANADKTVKIWRVRDGK---------ALKTLIGHDNEVNKVNFSPDGKTL 1461

Query: 72   KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
               S  R    KL +                VS G+ K  L   H   V  +SF+  G  
Sbjct: 1462 A--SASRDNTVKLWN----------------VSDGKFKKTLKG-HTDEVFWVSFSPDGKI 1502

Query: 132  IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDH 189
            I SA AD  +   D  +G+L+    A    +  +  + DG MLA+ +    +K +   D 
Sbjct: 1503 IASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDG 1562

Query: 190  KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG-----VKKQSASCVLAME 244
              +  FSGH   V   +FS +G+Y+ +SA  ++ + +W+ DG     + +  A  + A+ 
Sbjct: 1563 HLLHTFSGHSNVVYSSSFSPDGRYI-ASASEDKTVKIWQIDGHLLTTLPQHQAGVMSAIF 1621

Query: 245  HPAVFMDCRCIDNGGVD 261
             P    D + + +G +D
Sbjct: 1622 SP----DGKTLISGSLD 1634

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   + ++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + ++R  ++ + C+  S DGK LA+AA    +K ++ +  K M +F GH G V  +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246
            F  N +Y+L+S   +R I  W  D  K Q  SC+     P
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGP 233

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   + ++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + ++R  ++ + C+  S DGK LA+AA    +K ++ +  K M +F GH G V  +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246
            F  N +Y+L+S   +R I  W  D  K Q  SC+     P
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGP 233

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++  R    H   + ++ F  +GS + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKI-LRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + K+++ T+ + C+  S DGK LA+AA    +K ++ +  K M +F+GH G V  +
Sbjct: 136 RKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDD 262
            F  + +Y+L+S   +R I  W  D  K    SC+     P    +F    C   GG  D
Sbjct: 196 EFHPS-EYLLASGSSDRTIRFW--DLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQD 252

Query: 263 A 263
           +
Sbjct: 253 S 253

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
           G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct: 187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246

Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
           +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300

Required for ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   VS++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSLRIWDLEAAKILRTLMG-HKANVSSLDFHPYGEFVASGSLDTNIKLWDVR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFM 205
               + +++  T+ + C+  S DGK LA+A+    +K ++ +  K M + S H G V  +
Sbjct: 136 RKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNII 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFM--DCRCIDNGGVD 261
            F  N +Y+L+S   +R +  W  D  K Q   C      P  A+    D  CI  GG D
Sbjct: 196 EFHPN-EYLLASGSADRTVRFW--DLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKD 252

Query: 262 DAGLY 266
              +Y
Sbjct: 253 SLRVY 257

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus laevis (taxid: 8355)

>sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia GN=GSPATT00007594001 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H  GV+ ++F      + SA  DG +   D  +G      +  T  ++C+A    GK + 
Sbjct: 104 HRAGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGKYIC 163

Query: 176 TAAGQL--KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
           +A+  L  K +   +H  ++   GH  +V  + FSD+G ++L SA  ++ I LW      
Sbjct: 164 SASSDLSIKLWELKNHTCVKTLIGHEHSVSTVQFSDHGDFIL-SASRDKSIKLWEV---- 218

Query: 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEEL 287
            Q+  C         ++ C    N   D+  +   + S+  + YIW    GQ + +L
Sbjct: 219 -QTGFCKKTFSEHQEWVRCAVFSN---DEKQM--ASCSQDQMIYIWVIDSGQILHQL 269

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Paramecium tetraurelia (taxid: 5888)

>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1 SV=1

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
           G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct: 187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246

Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232
           +  G +K  +  + + +    GH G V  ++FS +G+ +L+S   +  + +WRT+ +
Sbjct: 247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGE-LLTSGGADAQVLIWRTNFI 302

Required for ciliogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
313184296	629	putative transducin family protein / WD-	0.915	0.890	0.670	0.0
359477163	628	PREDICTED: WD repeat-containing protein	0.913	0.890	0.663	0.0
224110316	617	predicted protein [Populus trichocarpa]	0.880	0.873	0.659	0.0
255551877	586	nucleotide binding protein, putative [Ri	0.888	0.928	0.644	0.0
449464758	570	PREDICTED: uncharacterized protein LOC10	0.923	0.991	0.615	0.0
449531051	547	PREDICTED: uncharacterized LOC101213788,	0.893	1.0	0.624	0.0
356521817	626	PREDICTED: uncharacterized protein LOC10	0.910	0.889	0.606	0.0
356564408	626	PREDICTED: uncharacterized protein LOC10	0.910	0.889	0.601	0.0
147853966	692	hypothetical protein VITISV_025726 [Viti	0.905	0.800	0.576	0.0
297807165	615	hypothetical protein ARALYDRAFT_325654 [	0.875	0.871	0.575	0.0

>gi|313184296|emb|CBL94162.1| putative transducin family protein / WD-40 repeat family protein [Malus x domestica]

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/561 (67%), Positives = 447/561 (79%), Gaps = 1/561 (0%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M SSNIRD+LT+FSP+LD FAI SGD RIKIWDT+KGQVQTEF DI ++E TS+Y  R E
Sbjct: 1   MASSNIRDLLTAFSPSLDLFAISSGDGRIKIWDTVKGQVQTEFTDIVASEDTSIYAKR-E 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTCMKW S +RKKKRKLGSS LVLGTGGGDVLAL V+AG LKWR++DCH GGV
Sbjct: 60  RGHLSVDYTCMKWFSSERKKKRKLGSSFLVLGTGGGDVLALDVAAGHLKWRVNDCHAGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           S+ISFA + SC+Y+AGADGM+C+ID LTG+L GKF+ASTK IS M+VSS+G +LATAA Q
Sbjct: 120 SSISFARNTSCLYTAGADGMICQIDSLTGNLSGKFKASTKAISSMSVSSNGNILATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FN SDHKK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIA+W  DG KKQSAS V
Sbjct: 180 MKIFNLSDHKKIQKFSGHPGAVRCMIFTEDGKYILSSAVGERYIAVWSIDGGKKQSASVV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           L MEHPA+F+D RCID+G V D GLYVLAISE GVCY W+GQNIEELR+ K TKI  SSE
Sbjct: 240 LKMEHPAIFVDSRCIDSGEVGDVGLYVLAISEVGVCYFWFGQNIEELRSAKPTKISLSSE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ S + K A   IFAA +Q I K AS   FVAYG  +KPSFQK+LV+SG DI L+ S D
Sbjct: 300 DILSTTYKGALPTIFAAVIQGIAKAASGQVFVAYGSPVKPSFQKLLVHSGTDIKLSSSHD 359

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           GVLLPMSQSL+KSK+G+ VQNRV ALDRANAE+A+ P+PK+ DS++KK RH  LS   DE
Sbjct: 360 GVLLPMSQSLVKSKKGQNVQNRVIALDRANAEEALHPMPKVFDSHEKKKRHDKLSFGQDE 419

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
            M D+ DS  +A  ++ KDD VE+EAD+  +CMEDRL++LGILS  DD   NS L +  F
Sbjct: 420 EMADLDDSRGRAGLVKSKDDMVELEADTAAICMEDRLKALGILSKVDDHTFNSTLNSATF 479

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID + N+P KKMR  +LSL P++ACKLL VLV  WQ+RS  G N+L WIY ILVNHGH
Sbjct: 480 KGIDLQRNMPHKKMREAVLSLEPSDACKLLGVLVATWQTRSSSGNNVLPWIYSILVNHGH 539

Query: 541 HLLSQESLTPMLSSLYKVFRS 561
            ++SQ+S T MLSSL KV +S
Sbjct: 540 DIMSQKSETQMLSSLLKVTKS 560

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477163|ref|XP_002271327.2| PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera] gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/562 (66%), Positives = 451/562 (80%), Gaps = 3/562 (0%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1   MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTC+KWLS+D KKKRKL  SLLVLGTG GDVLAL VSAG+LKWR+ DCHPGGV
Sbjct: 60  RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           SAIS +T GSCIY+AGADGM+ +ID   G+LLGKFRASTK IS M+VSSDGK+LATAA Q
Sbjct: 120 SAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LK  N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQSASCV
Sbjct: 180 LKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPAVF+D RCIDNG  D +GLYVLAISE GVCY WY +N+E+LRNTK TK+  S E
Sbjct: 240 LAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVSVSLE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D  SK+ K +   IFAAKLQ +VKPAS   FVAYG L+KPSFQK++V+SG DI +N SQD
Sbjct: 300 DNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKINISQD 359

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLPM QS  KSK+G  V++ VTALDRANAE+A+LP+PKI D ++K  R+QN + D DE
Sbjct: 360 GILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNIDPDE 418

Query: 421 VMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATL 479
           +M  D+++  SQ K +E KD    VEA ++T C+E++LRSLG+L NKDDL SNS L +  
Sbjct: 419 IMADDLMNVRSQNKAVESKDGLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSMLNSRK 478

Query: 480 FNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG 539
           F GI  E N+P KKMRA + S+ P +A +LL+VLV +WQSRS  G  +L WIY ILVNH 
Sbjct: 479 FKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTILVNHS 538

Query: 540 HHLLSQESLTPMLSSLYKVFRS 561
            H++SQE +T +L SL++  +S
Sbjct: 539 QHIVSQEPVTQLLDSLHQSTKS 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110316|ref|XP_002315482.1| predicted protein [Populus trichocarpa] gi|222864522|gb|EEF01653.1| predicted protein [Populus trichocarpa]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/555 (65%), Positives = 439/555 (79%), Gaps = 16/555 (2%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
           D+LT+FSP+LDY AI SGD RIKIWDTLKGQVQTEFADI S+E    +  + ER HLSVD
Sbjct: 10  DLLTAFSPSLDYLAISSGDGRIKIWDTLKGQVQTEFADITSSEGD--FYAKPERGHLSVD 67

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
           Y CMKWLS+D+KKKRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGVSA+SF+T
Sbjct: 68  YKCMKWLSLDKKKKRKLGSSLLVLGTGSGDVLALDVSAGQLKWSVSDCHPGGVSAVSFST 127

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCS 187
             SCIY++GADGM+C+ DP TG+ LGKFRASTK ISCM+VSSDGK+LATAA QLK FNCS
Sbjct: 128 RDSCIYTSGADGMICKTDPQTGNTLGKFRASTKAISCMSVSSDGKILATAAAQLKIFNCS 187

Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247
           DHKKMQKFSGHPGAVR M F+D+GKY+LSSAVGERY+ALWR DG K+QSASCVLAMEHPA
Sbjct: 188 DHKKMQKFSGHPGAVRSMVFTDDGKYILSSAVGERYVALWRIDGGKRQSASCVLAMEHPA 247

Query: 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307
           VF+DC+C +N GVDDAGLYVLAISETGVCY W G+N+EELRN+K TK+L S E+   K+ 
Sbjct: 248 VFIDCKCFENEGVDDAGLYVLAISETGVCYTWCGKNVEELRNSKPTKVLLSYEEF-PKNH 306

Query: 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS 367
           K A   + AAKLQ   KP + + F+AYGLL+KPSFQKIL++ G DI LN SQDGVLLP+S
Sbjct: 307 KGALPTVLAAKLQGTAKPTAANVFIAYGLLVKPSFQKILMHPGTDIKLNSSQDGVLLPLS 366

Query: 368 QSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVD 427
           QSL  +K+ R +QNRVTALDRAN EDA+LPLPK+ D ++KK R+ N+  D DEVM +  +
Sbjct: 367 QSLSNTKKARDLQNRVTALDRANVEDALLPLPKVYDLHEKKMRNMNI-VDHDEVMEESAE 425

Query: 428 SESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFET 487
           S+            V VE D+ T  ME +LR L IL +KDD + +  L++    GI+ E 
Sbjct: 426 SKD-----------VMVEVDAVTTSMEKQLRLLNILGSKDDGILSPTLDSATLKGINLED 474

Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQES 547
           NIP+KKMRAT+LS+ P+NA KLLEVLV  WQSRS  GK +L WIY ILVNHG ++++QE 
Sbjct: 475 NIPLKKMRATVLSMEPSNAYKLLEVLVAKWQSRSNSGKCVLPWIYCILVNHGQYIVAQEK 534

Query: 548 L-TPMLSSLYKVFRS 561
             + ML+SL K+ +S
Sbjct: 535 PESQMLNSLLKITKS 549

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551877|ref|XP_002516984.1| nucleotide binding protein, putative [Ricinus communis] gi|223544072|gb|EEF45598.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/562 (64%), Positives = 443/562 (78%), Gaps = 18/562 (3%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M SSNIRDILT+FSP+LDYFAI SGD R+KIWDT+KGQ+QTEFADI S+     Y  + E
Sbjct: 1   MVSSNIRDILTAFSPSLDYFAISSGDGRVKIWDTVKGQLQTEFADITSSNNADFY-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLS+DYTCMKWLS+DRK+KRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGV
Sbjct: 60  RGHLSIDYTCMKWLSLDRKRKRKLGSSLLVLGTGSGDVLALDVSAGQLKWTVSDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           SAISF+T  SCIY+AGADGM C++DP TG++LGKFRASTK IS ++VS DGK+LATAA Q
Sbjct: 120 SAISFSTSDSCIYTAGADGMCCKLDPQTGNMLGKFRASTKAISSVSVSPDGKILATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LKT N SD+KK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIALWRTDGVKKQ+ASCV
Sbjct: 180 LKTINLSDNKKIQKFSGHPGAVRAMIFTEDGKYILSSAVGERYIALWRTDGVKKQTASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPAVF+D +C++N GVDDAGL V+AISETGVCY W GQN+EELR  K TKI+  SE
Sbjct: 240 LAMEHPAVFLDSKCLENKGVDDAGLCVMAISETGVCYTWCGQNVEELRIAKPTKIVLFSE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D  SK+QK     IFAAKLQ   KP + H F+A GLL+KP FQKI+V+SG D+NL+ SQD
Sbjct: 300 D--SKNQKGGLRTIFAAKLQGTAKPMAAHVFIACGLLVKPLFQKIVVHSGTDMNLDISQD 357

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLPM++ +LKSK+G  VQNRVTALDRAN EDA LP+ K+ D ++K+ R + ++ + DE
Sbjct: 358 GILLPMNRPILKSKKGIDVQNRVTALDRANVEDASLPISKVSDFHEKRMRDKTVNIETDE 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VM  ++D+ SQ + +E      + E D+ T  ME +LR L ILS+K D        + + 
Sbjct: 418 VMVGLMDARSQPESVE------DREVDAVTTSMEKQLRLLEILSSKGD--------SMIL 463

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
             ID E N+P KKMRA +LS+ P+NA KLLEVLV  WQSRS  GK +L W+Y ILVNHGH
Sbjct: 464 GSIDLEANVPQKKMRAAVLSMEPSNASKLLEVLVAKWQSRSCSGKYVLPWMYCILVNHGH 523

Query: 541 HLLSQESL-TPMLSSLYKVFRS 561
           H+++Q+   T ML+SL ++ +S
Sbjct: 524 HIMAQDKPETQMLNSLLEITKS 545

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464758|ref|XP_004150096.1| PREDICTED: uncharacterized protein LOC101213788 [Cucumis sativus]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/577 (61%), Positives = 443/577 (76%), Gaps = 12/577 (2%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD  ++++TS+   + E
Sbjct: 1   MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDY CMKWLS+++K+KRK    LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60  KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           ++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W  DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPA+F+D RC ++GG D+  LY+LAISE G CY+WYGQN+EELR  K TKIL S  
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ SKS+K A  AI+AAKLQ + K  S   F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP SQS+ KSK+G  VQ  V ALDRANAEDA+ P+PKI DS +K   +Q+L  D  +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VMT +VDS S+       +D V V+ DS  VCMED+LRSLGIL N DD +  S L+  + 
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID E NI  KK+R  +LSL+P +A KLL  LV++WQSR + GKN+L WIY +L+NH  
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530

Query: 541 HLLSQESLTPMLSSLYKVFRSASCK--KTWSLGHSYF 575
           H+LSQE    ML SL+K F S +     T+ L  SYF
Sbjct: 531 HILSQEQSAQMLDSLFKQFVSVALTVVVTFLLSLSYF 567

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531051|ref|XP_004172501.1| PREDICTED: uncharacterized LOC101213788, partial [Cucumis sativus]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/557 (62%), Positives = 434/557 (77%), Gaps = 10/557 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD  ++++TS+   + E
Sbjct: 1   MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDY CMKWLS+++K+KRK    LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60  KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           ++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W  DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPA+F+D RC ++GG D+  LY+LAISE G CY+WYGQN+EELR  K TKIL S  
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ SKS+K A  AI+AAKLQ + K  S   F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP SQS+ KSK+G  VQ  V ALDRANAEDA+ P+PKI DS +K   +Q+L  D  +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VMT +VDS S+       +D V V+ DS  VCMED+LRSLGIL N DD +  S L+  + 
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID E NI  KK+R  +LSL+P +A KLL  LV++WQSR + GKN+L WIY +L+NH  
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530

Query: 541 HLLSQESLTPMLSSLYK 557
           H+LSQE    ML SL+K
Sbjct: 531 HILSQEQSAQMLDSLFK 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521817|ref|XP_003529547.1| PREDICTED: uncharacterized protein LOC100815458 [Glycine max]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/567 (60%), Positives = 431/567 (76%), Gaps = 10/567 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
           M S+++R ILT+F+P+LD+FAI +GD R+KIWDTLKGQV TEFADI ST +T  +L+   
Sbjct: 1   MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKS 60

Query: 59  LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
               HL++DYTC+KW S ++K+KRK  SSLLVLGTGGGDVLAL V++ QL WRL+DCHPG
Sbjct: 61  SINGHLALDYTCIKWFSFEKKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPG 120

Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           GV AI+ + + S IY+AG DGMVC ID +TG+LL KF+ASTK +SCM+VS DG  LATAA
Sbjct: 121 GVRAIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAA 180

Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
            QLK FNCS+HKK+QKFSGHPG+VR M F+++GKYVLSSAVGERY+A+WR DG KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMLFTEDGKYVLSSAVGERYVAVWRIDGAKKQSAS 240

Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
           CVLAMEHPAVF+D RCID+G  D+AG+ VLAISE G+CY+W+G +IEELRN K TKI  S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLS 300

Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
            ED+ S++ K A  AI+AAKLQ I KPAS   F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360

Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
            DGVLLPMSQSL+K K+G   Q   TALDRANAEDA+LP+PK+ DS++K+   QN    L
Sbjct: 361 HDGVLLPMSQSLVKYKKGTNAQT-ATALDRANAEDALLPIPKVFDSHEKEKAFQN---SL 416

Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
           D+ + D     S+   +EI+DD  + E D   +CMEDR+RSLG++S++ D  SN  L   
Sbjct: 417 DKDVIDDFHRSSKDDSVEIEDDMAQSEID--VICMEDRMRSLGMISSESDYASNIELCCK 474

Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
           L  GID E  IPVKK+RA +LS+  T A KLLEVL+  W+SRS  GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATIPVKKIRAAVLSMKSTKAWKLLEVLLAAWKSRSSSGKYILPWIYSILVNH 534

Query: 539 GHHLLSQESLTPMLSSLYKV--FRSAS 563
             + + ++ +T  L+SL K+  FR A+
Sbjct: 535 DLNHIPRQYVTCTLNSLDKITNFRGAT 561

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564408|ref|XP_003550446.1| PREDICTED: uncharacterized protein LOC100784148 [Glycine max]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/567 (60%), Positives = 433/567 (76%), Gaps = 10/567 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
           M S+++RDILT+F+P+LD+FAI +GD R+KIWDTL+GQV TEFADI ST +T  +L+   
Sbjct: 1   MASTDVRDILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTATTLHHKS 60

Query: 59  LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
               HL++DYTC+KW S D+K+KRK  SSLLVLGTGGGDVLAL +++GQL WRL+DCHPG
Sbjct: 61  SINGHLALDYTCIKWFSFDKKRKRKHISSLLVLGTGGGDVLALDIASGQLTWRLTDCHPG 120

Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           GV AI+ + + S IY+AGADGMVC ID +TG+LL KF+ASTK +SCM+VS DGK LATAA
Sbjct: 121 GVRAIASSANVSTIYTAGADGMVCLIDFMTGNLLEKFKASTKPVSCMSVSPDGKTLATAA 180

Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
            QLK FNCS+HKK+QKFSGHPG+VR M F+++GK++LSSAVGERY+A+WR +G KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKHILSSAVGERYVAVWRIEGAKKQSAS 240

Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
           CVLAMEHPAVF+D RCID+   D+AG+ VLAISE G+CY+W+G ++EELRN K TKI  S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSEEHDEAGICVLAISEIGICYLWFGNSVEELRNAKPTKISLS 300

Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
            EDV S++ K A  AI+AAKLQ I KPAS   F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDVPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360

Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
            DGVLLPMSQSL KSK+G   Q  VTALDRANAEDA+LP+PK+ DS++K+   Q     L
Sbjct: 361 HDGVLLPMSQSLGKSKKGTNAQT-VTALDRANAEDALLPIPKVFDSHEKEKAFQK---SL 416

Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
           D+ + D +   S+   +E++DD  + E D   +CMEDR+RSLG++S++    SN  L   
Sbjct: 417 DKDVIDDLHRSSKDDSVEMEDDMAQSEID--VICMEDRMRSLGMISSESVYASNIELCCK 474

Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
           L  GID E  +P+KK+RA +LS+  T A KLLEVL+  W+SRS  GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATVPMKKIRAAVLSMKSTKAGKLLEVLLAAWESRSSSGKYILPWIYSILVNH 534

Query: 539 GHHLLSQESLTPMLSSLYKV--FRSAS 563
               + Q+ +T  L+SL K+  FR A+
Sbjct: 535 DLSGIPQQYVTRTLNSLDKITNFRGAT 561

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/621 (57%), Positives = 436/621 (70%), Gaps = 67/621 (10%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1   MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTC+KWLS+D KKKRKL  SLLVLGTG GDVLAL VSAG+LKWR+ DCHPG V
Sbjct: 60  RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGRV 119

Query: 121 --------SAISFATHGSCIY---------------SAGADG--MVCEIDPLTGSLLGKF 155
                     I+     S +Y               S   +G   V  +  L  S++GK+
Sbjct: 120 KFWKDKWCKNIALCDSFSSLYALTTSKEAWLVELWDSTSVEGGWTVGVLGSLGPSMIGKW 179

Query: 156 R---------------------------------------ASTKGISCMAVSSDGKMLAT 176
           R                                       ASTK IS M+VSSDGK+LAT
Sbjct: 180 RRGVSAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLAT 239

Query: 177 AAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236
           AA QLK  N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQS
Sbjct: 240 AAAQLKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQS 299

Query: 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296
           ASCVLAMEHPAVF+D RCIDNG  D +GLYVLAISE GVCY WY +N+E+LRNTK TK+ 
Sbjct: 300 ASCVLAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVS 359

Query: 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356
            S ED  SK+ K +   IFAAKLQ +VKPAS   FVAYG L+KPSFQK++V+SG DI +N
Sbjct: 360 VSLEDNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKIN 419

Query: 357 CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS 416
            SQDG+LLPM QS  KSK+G  V++ VTALDRANAE+A+LP+PKI D ++K  R+QN + 
Sbjct: 420 ISQDGILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNI 478

Query: 417 DLDEVMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSAL 475
           D DE+M  D+++  SQ K +E KDD   VEA ++T C+E++LRSLG+L NKDDL SNS L
Sbjct: 479 DPDEIMADDLMNVRSQNKAVESKDDLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSML 538

Query: 476 EATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL 535
            +T F GI  E N+P KKMRA + S+ P +A +LL+VLV +WQSRS  G  +L WIY IL
Sbjct: 539 NSTKFKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTIL 598

Query: 536 VNHGHHLLSQESLTPMLSSLY 556
           VNH  H++SQE +  +L SL+
Sbjct: 599 VNHSQHIVSQEPVIQLLDSLH 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807165|ref|XP_002871466.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata] gi|297317303|gb|EFH47725.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/561 (57%), Positives = 427/561 (76%), Gaps = 25/561 (4%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M   NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y  ++ 
Sbjct: 1   MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDYTCMKWLS+++KKKRKLG+S+LVLGTGGGDVLAL V++GQLKWR+SDCHPGGV
Sbjct: 60  KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           +A+S +   SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct: 120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+T+G KKQSASCV
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGGVRCVAFTEDGKYVLSSAVGERYIAVWKTNGAKKQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LA+EHP VF+D      G  ++ GLYVLAISE GVCY WYG N+EEL N   TK+  ++ 
Sbjct: 240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D + K  K +   IFAAKLQ I+KP S H F+A GLL+KPSFQK+++  G D+ LN S+D
Sbjct: 296 DSSLKPHKGSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGTDLVLNASKD 355

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP++QS+ KS +G+ VQN+VT LDRA+AEDA+LP+ ++ D ++KK+  Q  SSD D 
Sbjct: 356 GILLPITQSVSKSSKGKGVQNKVTTLDRAHAEDALLPIARVADLHEKKSV-QLHSSDKD- 413

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
             TD+VD +SQA  +E             T  MED+LRSLGIL   D+    +   A++ 
Sbjct: 414 --TDMVD-QSQADHVE-------------TFSMEDKLRSLGILGGTDE--QKNVSYASII 455

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
           +GID E  +P KK+++ + S+ P++A K LE LV +WQ+R+  G+++L WIY I+VNH H
Sbjct: 456 DGIDLEAYLPPKKLKSAVSSMEPSSAFKTLEALVAMWQTRACGGRHLLPWIYSIMVNHSH 515

Query: 541 HLLSQESLTPMLSSLYKVFRS 561
           +++SQE    +L++L K+ +S
Sbjct: 516 YIMSQEPKNQLLNTLVKITKS 536

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
TAIR|locus:2147972	615	AT5G11240 "AT5G11240" [Arabido	0.705	0.702	0.571	8.1e-131
ZFIN|ZDB-GENE-021231-3	650	wdr43 "WD repeat domain 43" [D	0.529	0.498	0.243	2.2e-18
UNIPROTKB|Q15061	677	WDR43 "WD repeat-containing pr	0.848	0.766	0.206	1e-12
MGI|MGI:1919765	677	Wdr43 "WD repeat domain 43" [M	0.831	0.751	0.204	1e-12
UNIPROTKB|Q8IU52	348	TUWD12 "POC1 centriolar protei	0.183	0.321	0.295	4e-09
UNIPROTKB|G3V1X0	436	POC1B "POC1 centriolar protein	0.183	0.256	0.295	9.5e-09
UNIPROTKB|F1P8S8	478	POC1B "Uncharacterized protein	0.183	0.234	0.295	9.9e-09
UNIPROTKB|A5PKH9	478	WDR51B "Uncharacterized protei	0.183	0.234	0.295	9.9e-09
UNIPROTKB|Q8TC44	478	POC1B "POC1 centriolar protein	0.183	0.234	0.295	1.3e-08
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.183	0.235	0.286	3.5e-08

TAIR|locus:2147972 AT5G11240 "AT5G11240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 251/439 (57%), Positives = 322/439 (73%)

Query:     1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
             M   NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y  ++ 
Sbjct:     1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59

Query:    61 REHLSVDYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGV 120
             + HLSVDYTCMKWLS++                          ++GQLKWR+SDCHPGGV
Sbjct:    60 KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119

Query:   121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
             +A+S +   SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct:   120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASTQ 179

Query:   181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
             LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+TDG KKQSASCV
Sbjct:   180 LKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCV 239

Query:   241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
             LA+EHP VF+D      G  ++ GLYVLAISE GVCY WYG N+EEL N   TK+  ++ 
Sbjct:   240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295

Query:   301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
             D + K  KS+   IFAAKLQ I+KP S H F+A GLL+KPSFQK+++  G D+ LN S+D
Sbjct:   296 DSSLKPYKSSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKD 355

Query:   361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
             G+LLP++QS+ KS + + VQN+VT LDRA+AEDA+LP+ ++ D ++KK+   + SSD D 
Sbjct:   356 GILLPITQSVSKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQLH-SSDKDT 414

Query:   421 VMTDVVDSESQAKF-MEIK 438
              M D   ++    F ME K
Sbjct:   415 YMVDQSHADHVETFSMEDK 433

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

ZFIN|ZDB-GENE-021231-3 wdr43 "WD repeat domain 43" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 86/353 (24%), Positives = 146/353 (41%)

Query:    12 SFSPALDYF-AICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP    F A+C+ D R++IW+T    +Q E+   A +++  T   +G  R  +E   V
Sbjct:    13 AFSPKSHQFLALCAQDGRLRIWNTESKTLQQEYVPSAHLSAACTCVTWGPCRAVQE---V 69

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGVSAISFA 126
                  K    D                            G L   L   H G V+++ + 
Sbjct:    70 PQR--KRRKCDAASSAEQSDLLALGTAAGTILIYSTLK-GDLHCTLDGGHSGPVNSVQWH 126

Query:   127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
                S +YS   D  + E D  TG +  K++A    IS + +S DGKML +A   +K ++ 
Sbjct:   127 PEDSVLYSGSDDTHIAEWDLKTGKVCCKWKADRSAISSLCISPDGKMLLSAGMTIKMWDL 186

Query:   187 SDHKKMQKFSGHPGAVRFMTFS------DNGKYVLSSAVGERYIALW--RTDGVKKQSAS 238
                +  +KF+GH   V  + F+       NG Y LS AV +R +++W  R+DG  K S  
Sbjct:   187 ETKEVYRKFTGHSTMVTTLCFATTRPPDSNGMYFLSGAVHDRLLSVWQVRSDGKDKNSVV 246

Query:   239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
                  + P   +D   +      D  + +  + + G  +++     E   N +  K LS 
Sbjct:   247 SFTLTDEPQ-HID---LQTSNSKDEAVRLAVVCKDGQLHLF-----EHFLNGQCKKPLSP 297

Query:   299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351
             +  +   + K  +  +    L   +     +  +AYG  L+P  +K   N+ E
Sbjct:   298 ACSLQVSTMKGESP-VPVPLLAAALCADRQNLMLAYGHHLQPVMEKTPFNTSE 349

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0001525 "angiogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

UNIPROTKB|Q15061 WDR43 "WD repeat-containing protein 43" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 122/590 (20%), Positives = 231/590 (39%)

Query:    12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP +  YFA+ S D  +++W+T   ++  E+   A ++ T T   +   RL+ +  S 
Sbjct:    20 AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE-SP 78

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
                  K  +V                             G+L  +L S  H   V+ I +
Sbjct:    79 QRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVK----GELHSKLISGGHDNRVNCIQW 134

Query:   126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
                  C+YS   D  + E +  T  +  K++     +S + +S DGKML +A   +K + 
Sbjct:   135 HQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194

Query:   186 CSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALW--RTD 230
                 +  + F+GH   V  + F+               G Y LS AV +R + +W  R++
Sbjct:   195 LETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSE 254

Query:   231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290
               +K +       + P V++D    +N    +  + +  +   G  +++     E + N 
Sbjct:   255 NKEKSAVMSFTVTDEP-VYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNG 305

Query:   291 KATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKIL 346
                K L+S+  +      K +KS    I            S+   + YG   +P+ +++ 
Sbjct:   306 YCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSL--LLVYGSWFQPTIERVA 363

Query:   347 VNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVLPLPKIL 402
             +NS E  ++   +D      P  ++ +   R   + +    L         A+ P P   
Sbjct:   364 LNSREP-HMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQT 422

Query:   403 DSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI 462
             +  + K +       ++E +   +D ++  K       K +++ +S  V     L + G+
Sbjct:   423 EQVESKRKSGGNEVSIEERL-GAMDIDTHKK------GKEDLQTNSFPV-----LLTQGL 470

Query:   463 LSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSY 522
              SN  ++L N  L+           N+ +KK   T+L +       LL+ L    Q    
Sbjct:   471 ESNDFEML-NKVLQTR-------NVNL-IKK---TVLRMPLHTIIPLLQELTKRLQGHPN 518

Query:   523 KGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGH 572
                 ++QW+  +L  H  +L +   L P L +LY++  S   K    L H
Sbjct:   519 SAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESR-VKTFQKLSH 567

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1919765 Wdr43 "WD repeat domain 43" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 118/577 (20%), Positives = 227/577 (39%)

Query:    12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP +  YFA+ S D ++++W+T   ++  E+   A ++ T T   +   RL+ +    
Sbjct:    20 AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE--- 76

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
              +   K  S                              G+L  +L S  H   V+ I +
Sbjct:    77 SHQRKKRKS--EVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQW 134

Query:   126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
                  C+YS   D  + E    T  +  K++     +S + +S DGKML +A   +K + 
Sbjct:   135 HQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194

Query:   186 CSDHKKMQKFSGH--P-GAVRFMTFSDN---------GKYVLSSAVGERYIALW--RTDG 231
                 +  + F+GH  P  ++RF T   N         G Y LS AV +R + +W  R++ 
Sbjct:   195 LETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSEN 254

Query:   232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291
              +K +       + P V++D    +N    +  + +  +   G  +++     E + N  
Sbjct:   255 KEKSAVMSFTVTDEP-VYVDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNGH 305

Query:   292 ATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347
               K L+S+  +      K +K     I        +   S+   + YG   +P+ +++ +
Sbjct:   306 CKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWFQPTIERVAL 363

Query:   348 NSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTAL-DRANAEDAVLPLPKILDS 404
             NS +D ++   +D      P  ++ +   +   + +    L        A + LP     
Sbjct:   364 NS-KDTHICLERDISNCWAPTVETAITKVKTPVMNSEAKVLVPGIPGHHAPIKLPPAQPK 422

Query:   405 YDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS 464
               +  R    +    E     +D + + +    KDD   ++ +S  V     L + G+ S
Sbjct:   423 EAENKRKLGSTEATIEERLGAMDLDRKGR----KDD---LQTNSFAV-----LLTQGLES 470

Query:   465 NKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524
             N  ++L N  L+           N+ +K+   T+L +       LL+ L    Q      
Sbjct:   471 NDFEIL-NKVLQTK-------NVNL-IKR---TVLRIPLRVVIPLLQELTKRLQGHPNSA 518

Query:   525 KNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRS 561
               ++QW+  +L  H  +L +   L   L +LY++  S
Sbjct:   519 ALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMES 555

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IU52 TUWD12 "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:    57 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 116

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   117 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 170

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3V1X0 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   145 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 204

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   205 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 258

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1P8S8 POC1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
 Identities = 34/115 (29%), Positives = 59/115 (51%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  + TA
Sbjct:   187 GFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + SS   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFSSGGADTQVLLWRTN 300

GO:0042384 "cilium assembly" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|A5PKH9 WDR51B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
 Identities = 34/115 (29%), Positives = 60/115 (52%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + ++F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFTSGGADAQVLLWRTN 300

GO:0042384 "cilium assembly" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|Q8TC44 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300

GO:0005813 "centrosome" evidence=IDA

GO:0005814 "centriole" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 136 (52.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
 Identities = 33/115 (28%), Positives = 61/115 (53%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G +K  +  + + +    GH G V  ++FS +G+ +L+S   +  + +WRT+
Sbjct:   247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGE-LLTSGGADAQVLIWRTN 300

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	612
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-16
pfam04003	109	pfam04003, Utp12, Dip2/Utp12 Family	5e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 29/240 (12%)

Query: 13  FSPALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGNRLEREHLSV--D 67
           FSP     A  SGD  IK+WD   G++                S  G  L     S   D
Sbjct: 17  FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL----ASGSSD 72

Query: 68  YTCMKWLSVDRKKKRKLG------SSLLVLGTGGGDVLALAVSAGQLK-WRLSD------ 114
            T   W     +  R L       SS+     G   +L+ +     +K W +        
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTT 130

Query: 115 --CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
              H   V++++F+  G+ + S+  DG +   D  TG  +      T  ++ +A S DG+
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Query: 173 MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
            L +++  G +K ++ S  K +    GH   V  + FS +G   L+S   +  I +W   
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQE 546
            IP   +  T+LSL  +   +LLE L +  Q  RS   + +L+W+ F+L  HG +L+S  
Sbjct: 12  KIPPSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLLRIHGKYLVSNP 71

Query: 547 SLTPMLSSLYKVFRS 561
           +L P L SL KV R 
Sbjct: 72  NLLPQLRSLQKVLRR 86

This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2. Length = 109

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 34/211 (16%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
           +FSP     +  S D  IK+WD   G+  T                   R H       +
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-----------------RGHTD-WVNSV 141

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHG 129
            +                 + +   D  +    +  G+    L+  H G V++++F+  G
Sbjct: 142 AFSPDGT-----------FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDG 189

Query: 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187
             + S+ +DG +   D  TG  LG  R    G++ +A S DG +LA+ +  G ++ ++  
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218
             + +Q  SGH  +V  + +S +GK + S +
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 41/377 (10%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEF------ADIASTETTSLYGNRLEREHLS 65
           +FSP  +     S D  IK+WD   G+   +       + ++    +S  GN +     S
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 66  VDYTCMKW-LSVDRKKKRKL---------------GSSLLVLGTGGGDVLALAVSAGQLK 109
           +D T   W LS   K  R L               G  L    +  G +    +  G+  
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 110 WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168
             L+  H   VS+++F+  G   I S  +DG +   D  TG LL    +        + S
Sbjct: 192 STLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS 250

Query: 169 SDGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225
            DG +LA+ +  G ++ ++      + +  SGH  +V  + FS +GK + S +  +  + 
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVR 309

Query: 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW---YGQ 282
           LW  +  K  S+  +    H           +G +      V   S+ G   +W    G+
Sbjct: 310 LWDLETGKLLSS--LTLKGHEGPVSSLSFSPDGSL-----LVSGGSDDGTIRLWDLRTGK 362

Query: 283 NIEELRNTKATKILSSSEDVNSKSQKSA--TAAIFAAKLQDIVKPASVHTFVAYGLLLKP 340
            ++ L        +S S D    S  S   T  ++      +++    HT     L   P
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422

Query: 341 SFQKILVNSGEDINLNC 357
              K L +   D  +  
Sbjct: 423 D-GKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H GGV+ ++F+  G  + +   DG +   D  TG LL   +  T  +  +A S+DG  LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 176 TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
           + +    ++ ++    + ++  +GH   V  + FS +G+ + SS
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208
           L    +  T G++C+A S DGK+LAT +  G +K ++    + ++   GH G VR +  S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 209 DNGKYVLSSAVGERYIALWRTDGVKK 234
            +G Y+ S +  ++ I LW  +  + 
Sbjct: 61  ADGTYLASGS-SDKTIRLWDLETGEC 85

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 29/218 (13%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
           S +   +++SFSP     A  S D  I++WD              S+   S+  +     
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS----- 293

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
                                 G  L    + G   L    +   L       H G VS+
Sbjct: 294 --------------------PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 123 ISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA--AG 179
           +SF+  GS + S G+ DG +   D  TG  L      +  +  ++ S DG+++++    G
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDG 392

Query: 180 QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
            ++ ++ S    ++   GH   V  + FS +GK + S 
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG- 161
           VS   L   L   H   +++I+F+  G  + S  +DG +   D   G  L K        
Sbjct: 51  VSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110

Query: 162 -ISCMAVSS-DGKMLATAA----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYV 214
            +S +A+SS DG  +  A+    G +K ++ S   K ++   GH  +V  + FS +GK +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274
            S +  +  I LW     K  S    LA     V       D       GL + + S  G
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDG------GLLIASGSSDG 221

Query: 275 VCYIWYGQNIEELRNT 290
              +W     + LR+T
Sbjct: 222 TIRLWDLSTGKLLRST 237

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	612
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG4547	541	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
PTZ00420	568	coronin; Provisional	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.82
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.8
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG2096	420	consensus WD40 repeat protein [General function pr	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.76
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
PRK11028	330	6-phosphogluconolactonase; Provisional	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.64
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.61
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.6
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.55
PRK01742	429	tolB translocation protein TolB; Provisional	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.54
PRK01742	429	tolB translocation protein TolB; Provisional	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.51
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.48
KOG1334	559	consensus WD40 repeat protein [General function pr	99.48
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.43
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.39
PRK02889	427	tolB translocation protein TolB; Provisional	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
KOG4227	609	consensus WD40 repeat protein [General function pr	99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.38
PRK04922	433	tolB translocation protein TolB; Provisional	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG1310	758	consensus WD40 repeat protein [General function pr	99.35
KOG1310	758	consensus WD40 repeat protein [General function pr	99.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
KOG1334	559	consensus WD40 repeat protein [General function pr	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.26
PRK01029	428	tolB translocation protein TolB; Provisional	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.21
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.21
PRK04792	448	tolB translocation protein TolB; Provisional	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.19
PRK00178	430	tolB translocation protein TolB; Provisional	99.19
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.17
PRK04792	448	tolB translocation protein TolB; Provisional	99.17
PRK01029	428	tolB translocation protein TolB; Provisional	99.15
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.15
KOG2315	566	consensus Predicted translation initiation factor	99.14
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
KOG2321	703	consensus WD40 repeat protein [General function pr	99.12
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.1
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.07
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.05
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG2315	566	consensus Predicted translation initiation factor	99.03
KOG4547	541	consensus WD40 repeat-containing protein [General	99.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.99
KOG2314	698	consensus Translation initiation factor 3, subunit	98.97
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.97
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.96
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.9
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.82
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
COG4946	668	Uncharacterized protein related to the periplasmic	98.82
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.81
PRK04043	419	tolB translocation protein TolB; Provisional	98.81
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.81
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.78
PRK04043	419	tolB translocation protein TolB; Provisional	98.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.72
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.67
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.61
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.61
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.51
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.48
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	98.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.44
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.43
KOG2695	425	consensus WD40 repeat protein [General function pr	98.42
KOG2695	425	consensus WD40 repeat protein [General function pr	98.42
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.41
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.4
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.37
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.35
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.3
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.3
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.27
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.22
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.2
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.16
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.02
COG3391	381	Uncharacterized conserved protein [Function unknow	98.01
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.97
PRK02888	635	nitrous-oxide reductase; Validated	97.96
KOG3621	726	consensus WD40 repeat-containing protein [General	97.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.9
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.88
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.85
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.78
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.75
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.74
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.74
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.72
COG3391	381	Uncharacterized conserved protein [Function unknow	97.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.67
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.65
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.62
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.61
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.55
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.53
KOG3621	726	consensus WD40 repeat-containing protein [General	97.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.47
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.37
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.29
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.28
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.21
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.18
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.14
PRK13616	591	lipoprotein LpqB; Provisional	97.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.06
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.92
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.71
KOG2395	644	consensus Protein involved in vacuole import and d	96.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.64
PHA02713	557	hypothetical protein; Provisional	96.61
KOG2395	644	consensus Protein involved in vacuole import and d	96.6
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.6
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.59
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.42
PRK13616	591	lipoprotein LpqB; Provisional	96.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.14
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.79
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.64
PHA02713	557	hypothetical protein; Provisional	95.52
PHA03098	534	kelch-like protein; Provisional	95.37
KOG2444	238	consensus WD40 repeat protein [General function pr	95.31
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.15
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.08
KOG2444	238	consensus WD40 repeat protein [General function pr	95.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.95
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.93
PHA03098	534	kelch-like protein; Provisional	94.91
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.88
PHA02790	480	Kelch-like protein; Provisional	94.79
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.55
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.5
PHA02790	480	Kelch-like protein; Provisional	94.38
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.25
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.21
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.21
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.2
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.12
PRK10115	686	protease 2; Provisional	94.12
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.96
COG5167	776	VID27 Protein involved in vacuole import and degra	93.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.54
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.84
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.65
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.61
PRK13684	334	Ycf48-like protein; Provisional	92.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.08
PRK10115	686	protease 2; Provisional	91.92
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.79
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.67
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	91.61
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.43
COG5167	776	VID27 Protein involved in vacuole import and degra	91.38
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.33
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.9
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.72
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.53
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.17
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.04
PRK13684	334	Ycf48-like protein; Provisional	89.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.0
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.78
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.75
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.41
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.25
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.61
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.54
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.36
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.27
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.79
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.57
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.55
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.11
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.8
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.61
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.2
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.14
PLN02193	470	nitrile-specifier protein	85.04
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.01
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	84.8
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.61
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.46
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.41
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.19
KOG2247	615	consensus WD40 repeat-containing protein [General	82.35
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.1
PLN02153	341	epithiospecifier protein	81.81
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.64
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	81.27
COG4590	733	ABC-type uncharacterized transport system, permeas	81.2
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	80.73
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.71
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.51
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.02

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-53  Score=427.14  Aligned_cols=510  Identities=19%  Similarity=0.254  Sum_probs=392.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +..+|..+  +|+..|++||.|+. -|.+-||++++...+...++|...+.++.|+++                      
T Consensus       306 s~~~I~t~--~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD----------------------  361 (893)
T KOG0291|consen  306 SDQKILTV--SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD----------------------  361 (893)
T ss_pred             ccceeeEE--EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence            45678544  99999999999887 489999999999999999999999999999988                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                           ++++++|+.||+|+|||..+|-|..++ ..|++.|+++.|+..|+.++++|.||+|+.||+..+++.++|.....
T Consensus       362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  362 -----GQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             -----CcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence                 999999999999999999999999888 46999999999999999999999999999999999999999987654


Q ss_pred             -CeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       161 -~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                       ...|++..|.|.++.+|+   =.|++|++++|+.+..+.||++||.+++|+|++..|++++ +|++|++||+-..... 
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~-  513 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT-  513 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence             788999999999999998   3899999999999999999999999999999999999987 9999999999776432 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                         +.++.....++ .+.|.     |+|+.|++++.||.|.+||.+.+.++..+...+.......  ..+...+...-..
T Consensus       514 ---vEtl~i~sdvl-~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~--~~D~~ta~~sa~~  582 (893)
T KOG0291|consen  514 ---VETLEIRSDVL-AVSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK--ETDRITAENSAKG  582 (893)
T ss_pred             ---eeeEeecccee-EEEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc--ccceeehhhcccC
Confidence               34455555554 35566     9999999999999999999999988877776655444321  1111111111222


Q ss_pred             ccccceecCCCceEEEEeCCccCce----EEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecceeecccC--C
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPS----FQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRA--N  390 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~----~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~--~  390 (612)
                      -.+..+++++||.++++.|...+.+    .+.+.... ...+.+.|-||...     .-++.++.+.++. ..++.+  +
T Consensus       583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk-fqiS~N~sLdg~~e-----fln~rkmtEfG~~-~LiD~e~~~  655 (893)
T KOG0291|consen  583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK-FQISDNRSLDGVLE-----FLNRRKMTEFGNM-DLIDTEESD  655 (893)
T ss_pred             CceEEEEEcCCCCEEEecCCcccEEEEECchhheeee-EEeccccchhHHHH-----HhccccccccCCc-ccccccccc
Confidence            3455678888888888888766532    22222222 34555567777665     4567777777764 112211  1


Q ss_pred             ---ccccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhcc-------Cc---ccccccCCccCCHHHHH
Q 007234          391 ---AEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIK-------DD---KVEVEADSQTVCMEDRL  457 (612)
Q Consensus       391 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~e~~~~~~l  457 (612)
                         ..+..+|+.++++.+.|+-||+     -.+...-.++.|..|+...++       |.   .+|.+. +.++|.+...
T Consensus       656 ~e~~i~~~lpG~~~gdlssRr~rpe-----Irv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~L-D~~vTPe~v~  729 (893)
T KOG0291|consen  656 LEGRIDIALPGVQRGDLSSRRFRPE-----IRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDL-DVDVTPESVR  729 (893)
T ss_pred             ccccccccCCccccCCccccccCce-----EEEEEEEECCCcCeeeeecccceEEEecCCceEEccccc-ccccCHHHHH
Confidence               1256899999999999988884     233334457888888766432       11   234444 3456666666


Q ss_pred             HhcCCCCCCCCCCCCchhhhhhhccc---------cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchH
Q 007234          458 RSLGILSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNIL  528 (612)
Q Consensus       458 ~~l~~~~~~~~~~~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~  528 (612)
                      +++..          +.+..+|+.+|         +++..+|.+.|+..+..||..|+.+||++|++.++..|| .|+++
T Consensus       730 ~al~~----------qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l~~s~H-ieF~l  798 (893)
T KOG0291|consen  730 EALRE----------QEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFLENSPH-IEFYL  798 (893)
T ss_pred             HHHhc----------chHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHHhcCch-HHHHH
Confidence            66542          25566666666         678888999999999999999999999999988877775 89999


Q ss_pred             HHHHHHHHHhcccccCCc-ChHHHHHHHHHHH-------HhhcccccccccceEeecccc
Q 007234          529 QWIYFILVNHGHHLLSQE-SLTPMLSSLYKVF-------RSASCKKTWSLGHSYFIADTN  580 (612)
Q Consensus       529 ~W~~~ll~~H~~~l~s~~-~l~~~L~~l~~~l-------~~r~~~~~~~~~~~~~~~~~~  580 (612)
                      +|+++||.+||.||.... .+.|+|..||+.|       .+-..-|-|+|  .|+++-++
T Consensus       799 ~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L--~~lv~~~~  856 (893)
T KOG0291|consen  799 RWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTL--RYLVSKRQ  856 (893)
T ss_pred             HHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHhhhh
Confidence            999999999999998653 4455555555554       44556677888  88776554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-46  Score=349.27  Aligned_cols=323  Identities=17%  Similarity=0.223  Sum_probs=281.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|  ||++|||+|..||+|+.|.++|+||+.+.....+.++|...|.++.|+++                       
T Consensus       114 H~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD-----------------------  168 (480)
T KOG0271|consen  114 HGEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD-----------------------  168 (480)
T ss_pred             CCCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-----------------------
Confidence            35688  88899999999999999999999999999999999999998888877777                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-----CCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                          +..|++|+.+|.|++||+.+|+++..-+.+|...|++++|.|     ..++|+++|.||+|+|||+..+.++..+.
T Consensus       169 ----gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls  244 (480)
T KOG0271|consen  169 ----GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS  244 (480)
T ss_pred             ----cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence                889999999999999999999999888899999999999976     56789999999999999999999999999


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEe-----------eCCc-----------
Q 007234          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGK-----------  212 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----------p~~~-----------  212 (612)
                      +|..+|+|++|--+| ++++|+  ++|++|+...|+++++++||...|+.++.+           |.++           
T Consensus       245 gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  245 GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            999999999998655 888888  899999999999999999999999999876           3343           


Q ss_pred             --------------EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234          213 --------------YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (612)
Q Consensus       213 --------------~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i  278 (612)
                                    .+++++ +|.++.+|+....++.    +..+..+...+..+.|+     ||++++++++.|+.|++
T Consensus       324 Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkp----i~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkL  393 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKP----ITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKL  393 (480)
T ss_pred             HHHHHHHhhccCcceeEEec-CCceEEEecccccccc----hhhhhchhhheeeEEEC-----CCccEEEEeecccceee
Confidence                          388887 7999999997765432    34455666677788898     99999999999999999


Q ss_pred             EECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEec
Q 007234          279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (612)
Q Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S  358 (612)
                      |+..+|+.+..+.++...+-... ++.|.+    .+++++.|.+++.|+        ...+.....+.+|..+|.++.||
T Consensus       394 W~g~tGk~lasfRGHv~~VYqva-wsaDsR----LlVS~SkDsTLKvw~--------V~tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  394 WDGRTGKFLASFRGHVAAVYQVA-WSADSR----LLVSGSKDSTLKVWD--------VRTKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             eeCCCcchhhhhhhccceeEEEE-eccCcc----EEEEcCCCceEEEEE--------eeeeeecccCCCCCceEEEEEec
Confidence            99999999987776655444333 677877    899999999888877        22334445778899999999999


Q ss_pred             CCCceEeccccceeeeccee
Q 007234          359 QDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~  378 (612)
                      |||..+ ++|+.|+.+++|.
T Consensus       461 pDG~rV-~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 PDGQRV-ASGGKDKVLRLWR  479 (480)
T ss_pred             CCCcee-ecCCCceEEEeec
Confidence            999999 9999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-45  Score=373.23  Aligned_cols=468  Identities=18%  Similarity=0.220  Sum_probs=339.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.+.||++  +||.|...+++|+ .+.++||+..++++++++...                    ..-|..+.|.     
T Consensus       372 HR~dVRsl--~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg-----  423 (888)
T KOG0306|consen  372 HRSDVRSL--CVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG-----  423 (888)
T ss_pred             chhheeEE--EeecCceeeeecC-CCcEEEEEccCcceeEEeccc--------------------cEEEEEecCC-----
Confidence            46789888  9999998888876 468999999999999998521                    2334444443     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-----Ccee----
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLL----  152 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-----~~~~----  152 (612)
                          +.++++|..+|.+.+||+.+...+..+ ++|.+.|++++.+||+..+++||.|.+|++||+.-     |...    
T Consensus       424 ----d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls  498 (888)
T KOG0306|consen  424 ----DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS  498 (888)
T ss_pred             ----CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence                788999999999999999999888666 58999999999999999999999999999999641     2211    


Q ss_pred             ----EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          153 ----GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       153 ----~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                          ++++ -...|.|+++||||++|+++-  +++++|-+.+.+....+.||.-||.||..+||++.+++|+ .|++|++
T Consensus       499 l~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKi  576 (888)
T KOG0306|consen  499 LKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKI  576 (888)
T ss_pred             eccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEE
Confidence                1222 346899999999999999997  8999999999999999999999999999999999999997 7999999


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCC
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS  306 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~  306 (612)
                      |-++.|.+.     ..+..|...+.++.|.     |....+++++.||.|+.||.+..+.+                   
T Consensus       577 WGLdFGDCH-----KS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i-------------------  627 (888)
T KOG0306|consen  577 WGLDFGDCH-----KSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI-------------------  627 (888)
T ss_pred             eccccchhh-----hhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh-------------------
Confidence            999999854     4555666666777787     89999999999999999997655442                   


Q ss_pred             CcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecceeec
Q 007234          307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTAL  386 (612)
Q Consensus       307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~  386 (612)
                                                          +++.+|..+|++++.+|+|.++ +|+|+|.++|+|+.++.+..+
T Consensus       628 ------------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~l  670 (888)
T KOG0306|consen  628 ------------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILIL  670 (888)
T ss_pred             ------------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceee
Confidence                                                3677899999999999999999 999999999999987655444


Q ss_pred             ccCCccccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhccCcccccccCCccCCHHHHHHhcCCCC--
Q 007234          387 DRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS--  464 (612)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~--  464 (612)
                      +.+.+  .+.  ...|.     ..-+  +++....  .....|....  ..      -+..+.....|..++++++..  
T Consensus       671 EeekE--~Er--Ee~yE-----~l~~--~~e~~~~--~~~~~g~~~~--~s------kkTieSvk~aE~i~ea~di~~~e  729 (888)
T KOG0306|consen  671 EEEKE--GER--EEEYE-----TLLA--SEEVVAG--DGSADGDAGV--AS------KKTIESVKSAERILEALDIGREE  729 (888)
T ss_pred             ehhhh--hhh--HHHHH-----Hhhh--hcccccC--CCcccccccc--hh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence            42111  000  00010     0000  0000000  0000000000  00      011112222233344444321  


Q ss_pred             --CCCCCCCCchhhhhhhccc---------cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHH
Q 007234          465 --NKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF  533 (612)
Q Consensus       465 --~~~~~~~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~  533 (612)
                        ...+..+..|. .+|++|+         .++..++.+.++.++.-||++||+.+|+++.+-+ +++.+.+++++.+.+
T Consensus       730 ~~~~ee~~~g~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~~~-q~~~~veLv~rv~~f  807 (888)
T KOG0306|consen  730 LTQLEEYSPGHPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDECI-QRKSKVELVCRVLFF  807 (888)
T ss_pred             HHhHHhhcCCCCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHHHH-cCCCcceeEeeeeee
Confidence              00111001121 4566665         5667789999999999999999999999998655 445679999999999


Q ss_pred             HHHHhcccccCCcChHHHHHHHHHHHHhhcccccccccceEeecccceeeeccchhccCCceeEe
Q 007234          534 ILVNHGHHLLSQESLTPMLSSLYKVFRSASCKKTWSLGHSYFIADTNHLLLLPDYCIQRSSFSIF  598 (612)
Q Consensus       534 ll~~H~~~l~s~~~l~~~L~~l~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (612)
                      |+++|..+|.++++|+|.|..+...+++.-+.-.=-+  +|++++-..   ++-|+-++.....|
T Consensus       808 L~rih~~~it~~~~~kp~l~~i~s~l~~~v~q~rdv~--G~NlagL~~---l~~E~e~r~~v~~f  867 (888)
T KOG0306|consen  808 LLRIHHKQITAHKNMKPLLEKIKSKLREIVEQLRDVL--GFNLAGLSL---LKQEWEDRENVKFF  867 (888)
T ss_pred             hhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhhhh--hhhhhHHHH---HHHhhhchhcchhH
Confidence            9999999999999999999888877776544433335  777777543   34445444444333

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-43  Score=335.43  Aligned_cols=281  Identities=18%  Similarity=0.218  Sum_probs=254.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +.||  ..|.||+|++.|||||.+|.++||+..++..+++|.+|.+.+.++.|.|.                  +.    
T Consensus       175 ~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~------------------~~----  230 (459)
T KOG0272|consen  175 TRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPV------------------DS----  230 (459)
T ss_pred             CCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccC------------------CC----
Confidence            5688  55699999999999999999999999999999999999887766666554                  10    


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                         +..+++|+.||++++|++.+...+..+ .+|...|..++|+|+|++|.|++.|.+-++||+.++..+...++|..+|
T Consensus       231 ---~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  231 ---DLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             ---ccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc
Confidence               567999999999999999998888777 6899999999999999999999999999999999999988899999999


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      .+++|.|||.++++|+  ..-+|||+++|+++..+.||..+|.++.|+|+|..+++++ .|++++|||++..+.     +
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~-----l  380 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE-----L  380 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc-----c
Confidence            9999999999999999  6789999999999999999999999999999999999987 799999999998764     4


Q ss_pred             EeecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~  319 (612)
                      +.+..+...++-+.|+     | .|.+|++++.|+++++|...++..++                               
T Consensus       381 y~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k-------------------------------  424 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK-------------------------------  424 (459)
T ss_pred             eecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch-------------------------------
Confidence            7778888888899998     6 78999999999999999876665432                               


Q ss_pred             cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                              ++.+|.+.|.++.+|+||.++ +|+|.|+++|+|.
T Consensus       425 ------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 ------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR  458 (459)
T ss_pred             ------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence                                    567899999999999999999 9999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-38  Score=299.57  Aligned_cols=292  Identities=20%  Similarity=0.252  Sum_probs=234.8

Q ss_pred             EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC
Q 007234           39 VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG  118 (612)
Q Consensus        39 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~  118 (612)
                      |...+.+|.+.|.+..|+++                           +..+++|+.|.++++||+.+....... ++|..
T Consensus       107 CssS~~GH~e~Vl~~~fsp~---------------------------g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~  158 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPT---------------------------GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKN  158 (480)
T ss_pred             eccccCCCCCcEEEEEecCC---------------------------CceEEecCCCceEEeeccCCCCcceee-cCCcc
Confidence            44556677777777777766                           889999999999999999999988777 68999


Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCeeEEEECC-----CCCEEEEeC--CeEEEEEcCCCe
Q 007234          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSS-----DGKMLATAA--GQLKTFNCSDHK  190 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~sp-----dg~~l~~~~--g~i~lwd~~~~~  190 (612)
                      -|.|++|+|||+.|++|+.||+|++||.++|+++. .+.+|...|++++|.|     ..++||+++  |.|+|||+..++
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence            99999999999999999999999999999998765 5999999999999975     678999988  999999999999


Q ss_pred             eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec------CCccCCC-
Q 007234          191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID------NGGVDDA-  263 (612)
Q Consensus       191 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-  263 (612)
                      ++..+.||+.+|+|+.|-.+| ++++++ .|++|++|+...+...     ..+..+...+..++.+      .++++|. 
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~g-liySgS-~DrtIkvw~a~dG~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~t~  311 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGEG-LIYSGS-QDRTIKVWRALDGKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDHTG  311 (480)
T ss_pred             EEEEeccCccceEEEEEcCCc-eEEecC-CCceEEEEEccchhHH-----Hhhcccchheeeeeccchhhhhcccccccc
Confidence            999999999999999998666 677775 8999999999887643     2333333333333332      1112233 


Q ss_pred             ------------------------CcEEEEEecCCcEEEEECCCcc-ee---cccCCceeEeecccccCCCCcccchhhh
Q 007234          264 ------------------------GLYVLAISETGVCYIWYGQNIE-EL---RNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       264 ------------------------~~~l~t~s~dg~i~iwd~~~~~-~~---~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                                              +..+++|+.|+++.+|+....+ .+   ..++.....+.    |+|+++    +|+
T Consensus       312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSPd~r----~IA  383 (480)
T KOG0271|consen  312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSPDGR----YIA  383 (480)
T ss_pred             ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECCCcc----EEE
Confidence                                    3459999999999999965544 33   33333333333    899999    999


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecc
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                      +|+||..+++|+|.        ......++.+|-..|..++||.|.++| +|||.|.++++|++..+
T Consensus       384 SaSFDkSVkLW~g~--------tGk~lasfRGHv~~VYqvawsaDsRLl-VS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  384 SASFDKSVKLWDGR--------TGKFLASFRGHVAAVYQVAWSADSRLL-VSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             EeecccceeeeeCC--------CcchhhhhhhccceeEEEEeccCccEE-EEcCCCceEEEEEeeee
Confidence            99999988888732        222334788999999999999999999 99999999999999553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-37  Score=281.58  Aligned_cols=281  Identities=16%  Similarity=0.202  Sum_probs=249.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      -..|  .++.|++|.++++++|.||.+.|||..+...++-+.-....|..++|+|.                        
T Consensus        55 ~~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------  108 (343)
T KOG0286|consen   55 LNKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------  108 (343)
T ss_pred             ccce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC------------------------
Confidence            3566  45599999999999999999999999999999888888888888888887                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCC--e---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~--~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                         +++++.|+.|+...||++.+.  +   .+.+.+.+|++.+.|+.|-+|+ .|+|+|.|.++.+||+++|+.+..|.+
T Consensus       109 ---g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  109 ---GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             ---CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecC
Confidence               999999999999999999865  2   3344457999999999999855 699999999999999999999999999


Q ss_pred             CCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          158 STKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       158 ~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      |.+.|.++.++| +++.+++|+  +..++||++.+.+++.|.||.+.|+++.|.|+|.-+++++ +|+++++||++....
T Consensus       185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~  263 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQE  263 (343)
T ss_pred             CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcE
Confidence            999999999999 999999998  8999999999999999999999999999999999999987 799999999999876


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i  314 (612)
                      .   .++..+.....+..+.|+     ..|++|++|..|.++.+||.-.++.+                           
T Consensus       264 ~---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~v---------------------------  308 (343)
T KOG0286|consen  264 L---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGERV---------------------------  308 (343)
T ss_pred             E---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccceE---------------------------
Confidence            5   555555555667888888     89999999999999999996444332                           


Q ss_pred             hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                  -.+.+|.+.|.++..+|||.-+ +|||-|..+|+|.
T Consensus       309 ----------------------------g~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~  343 (343)
T KOG0286|consen  309 ----------------------------GVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA  343 (343)
T ss_pred             ----------------------------EEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence                                        1566899999999999999999 9999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.5e-38  Score=316.18  Aligned_cols=492  Identities=17%  Similarity=0.169  Sum_probs=341.2

Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +|.+||  +.++|+|.|..+|+|+.||.++|||+..+.+.+.|++|.+.+..+.|.+...                    
T Consensus       103 ~He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~--------------------  160 (775)
T KOG0319|consen  103 IHEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN--------------------  160 (775)
T ss_pred             ccCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc--------------------
Confidence            368899  6779999999999999999999999999999999999999999888887611                    


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe----
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----  156 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----  156 (612)
                           ..+|++|..|+.+++||+.+..........|.+.|+++.|++|+..++++|.|..+.+||+.+.+...++.    
T Consensus       161 -----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~  235 (775)
T KOG0319|consen  161 -----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES  235 (775)
T ss_pred             -----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh
Confidence                 45689999999999999997665223446799999999999999999999999999999885432211110    


Q ss_pred             --------------------------------------------------------------------------------
Q 007234          157 --------------------------------------------------------------------------------  156 (612)
Q Consensus       157 --------------------------------------------------------------------------------  156 (612)
                                                                                                      
T Consensus       236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i  315 (775)
T KOG0319|consen  236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI  315 (775)
T ss_pred             eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence                                                                                            


Q ss_pred             -----------------------------------------------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC
Q 007234          157 -----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (612)
Q Consensus       157 -----------------------------------------------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~  187 (612)
                                                                     +|...|.++....+|-+|++++  .++++|.++
T Consensus       316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence                                                           3334455555445666777777  678888664


Q ss_pred             CC----eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeE----eecCCceeEEeEEecCC
Q 007234          188 DH----KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNG  258 (612)
Q Consensus       188 ~~----~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  258 (612)
                      .+    -++....||.+.|.+++++..+. +|++++ .|+++++|++...+.......+    ....|...+.++.++  
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia--  472 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA--  472 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEec--
Confidence            33    23455678999999999987664 666665 8999999999884333222233    334566677888887  


Q ss_pred             ccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc
Q 007234          259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL  338 (612)
Q Consensus       259 ~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~  338 (612)
                         |+.++++|||.|++.++|+++....+....+++..+-+.. |++..+    .+++++.|.++++|.        -..
T Consensus       473 ---~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-Fs~~dq----~laT~SgD~TvKIW~--------is~  536 (775)
T KOG0319|consen  473 ---PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-FSKNDQ----LLATCSGDKTVKIWS--------IST  536 (775)
T ss_pred             ---CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-eccccc----eeEeccCCceEEEEE--------ecc
Confidence               9999999999999999999998888777777766555554 788777    899999999888876        345


Q ss_pred             CceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecc--eeecccCCccccccCCCcccchhhhhhcccCCCC
Q 007234          339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS  416 (612)
Q Consensus       339 ~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (612)
                      +.+..++.+|...|..+.|-.+|+.| +|++.||.+++|++.+.  ...+|  ..+|+.+......             .
T Consensus       537 fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~-------------~  600 (775)
T KOG0319|consen  537 FSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSP-------------L  600 (775)
T ss_pred             ceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecC-------------c
Confidence            67777999999999999999999999 99999999999999654  44554  2234443221110             0


Q ss_pred             CccccccccccchhhhhhhhccC--cc--cccccCCccCCHHHHHHhcCCCCCCCCCCCCchhhhhhhccc---c----c
Q 007234          417 DLDEVMTDVVDSESQAKFMEIKD--DK--VEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----F  485 (612)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~~l---~----~  485 (612)
                      +.....++.+..-..|++....+  .+  ...+..+.+.+++.-|.+.       ++..|--++..|....   .    +
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~-------~~~~A~~LA~tLd~P~~~f~vi~~~  673 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQK-------RYTKAFVLALTLDKPHLVFTVINAL  673 (775)
T ss_pred             cceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHhHhhccCchhHHHHHHHH
Confidence            11011111111111222221100  00  0001111122222222211       1111111222111111   2    2


Q ss_pred             cccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhccc-ccCCcChHHHHHHHHHHHHhh
Q 007234          486 ETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHH-LLSQESLTPMLSSLYKVFRSA  562 (612)
Q Consensus       486 ~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~-l~s~~~l~~~L~~l~~~l~~r  562 (612)
                      .+..++..++.+|++|.-....-||+++. .|+.++......++-|..+|+.|-.- |...|....++..|....++-
T Consensus       674 ~r~r~~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRH  750 (775)
T KOG0319|consen  674 YRERDPEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRH  750 (775)
T ss_pred             HhcCCcHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHH
Confidence            33457889999999999999999999999 89998887777887888888876543 556677777777777666553

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-34  Score=257.20  Aligned_cols=287  Identities=18%  Similarity=0.250  Sum_probs=236.0

Q ss_pred             CCcccceeEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspd-g~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |+..|..+  +..+. .+.+.+++.|.++.+|++.     .|..++.|++|...+.....+.+                 
T Consensus        14 h~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-----------------   74 (315)
T KOG0279|consen   14 HTDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-----------------   74 (315)
T ss_pred             CCceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-----------------
Confidence            45667666  66665 5688899999999999764     56678899999888887777777                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                                +++.++++.||.+++||+.+|+..+++ .+|...|.+++|+||++.+++||.|.+|++||+. +.+..++
T Consensus        75 ----------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~  142 (315)
T KOG0279|consen   75 ----------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTI  142 (315)
T ss_pred             ----------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEE
Confidence                      899999999999999999999888776 6899999999999999999999999999999975 5555665


Q ss_pred             ecC--CCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          156 RAS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       156 ~~~--~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      ..+  .+.|+|++|+|+  ..++++++  ++|++||+++.+....+.||.+.++.+.+||||...++++ .||.+.+||+
T Consensus       143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL  221 (315)
T KOG0279|consen  143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDL  221 (315)
T ss_pred             ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEc
Confidence            544  679999999997  67888888  8999999999999999999999999999999999999987 8999999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  309 (612)
                      +.++     +.+.+++.. .+..++|+     |+...|+.+... .|+|||++++..+....+.....        ..+ 
T Consensus       222 ~~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~--------s~~-  280 (315)
T KOG0279|consen  222 NEGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGP--------SSK-  280 (315)
T ss_pred             cCCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccCC-ceEEEeccchhhhhhcccccccc--------ccc-
Confidence            9987     346665554 55677787     887776666554 59999999988776544331111        000 


Q ss_pred             cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                           ...-...+++||+||..| ++|-.|+.+++|.+
T Consensus       281 -------------------------------------~~~~~clslaws~dG~tL-f~g~td~~irv~qv  312 (315)
T KOG0279|consen  281 -------------------------------------AGDPICLSLAWSADGQTL-FAGYTDNVIRVWQV  312 (315)
T ss_pred             -------------------------------------cCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEe
Confidence                                                 001135789999999999 99999999999987

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.2e-34  Score=284.53  Aligned_cols=483  Identities=31%  Similarity=0.405  Sum_probs=331.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc-----------cccc
Q 007234           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR-----------KKKR   82 (612)
Q Consensus        14 spdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~-----------~~~~   82 (612)
                      +|.+.|+|....||.++|||+.+++..++|.               +..+++..+++..|.-.-.           ..+.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~---------------p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~   66 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA---------------PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA   66 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeec---------------cchhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence            4667899999999999999999999999886               3355666777777763221           1122


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                      ..+...++.|...|.|.+|++..|+..+.+. ..|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.+++....
T Consensus        67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL  146 (541)
T ss_pred             cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence            3356789999999999999999999988887 789999999999998889999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC-----CcEEEEEEcCCCeEEEEEcCC-Cccc
Q 007234          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ  235 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~l~s~s~~d~~i~vwd~~~-~~~~  235 (612)
                      +.+++++|||+.+++++++|++||+++++.+..|+||.++|+++.|..+     |.+++++...++.+.+|-... .+..
T Consensus       147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk  226 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK  226 (541)
T ss_pred             cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence            9999999999999999999999999999999999999999999999877     788888776778899998876 3334


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCc--EEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      ...+.+..++.........-      .++.  +.++.+..+-+..|...+...+-..+..+....... .++       -
T Consensus       227 s~~~sl~~~dipv~~ds~~~------ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~-~s~-------g  292 (541)
T KOG4547|consen  227 SLSCSLTVPDIPVTSDSGLL------EDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD-SSK-------G  292 (541)
T ss_pred             hhheeeccCCCCeEeccccc------cccccceEEeeeccCceeeeccccHHHHhcCccccccceeee-ccc-------c
Confidence            45566666666655544433      3333  444444444444444444443333333332222111 111       2


Q ss_pred             hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEE-ecCCCceEeccccceeeecceeeecceeecccCCcc
Q 007234          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN-CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAE  392 (612)
Q Consensus       314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~-~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~  392 (612)
                      ++++.+...    .-+.++.+|...++.++++....+.-..+. ..-.|... ++...-....-..+.|....+.    +
T Consensus       293 ~~a~~~~~~----~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~-~~~~~~k~~~rqv~~n~~~k~~----~  363 (541)
T KOG4547|consen  293 FLAALFGID----KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK-LKLVTSKEGKRQVVLNSVAKLG----E  363 (541)
T ss_pred             hhhhhcccc----hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc-cceeeeecccceeecchhhhhc----c
Confidence            444444321    135667788877777766654332222111 11111111 0000000000000000000000    0


Q ss_pred             ccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhccCcccccccCCccCCHHHHHHhcCCCCCCCC---C
Q 007234          393 DAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDD---L  469 (612)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~---~  469 (612)
                      +  .    .    ..+..+                   +...++.   .  ......|..+++|+.++.......+   .
T Consensus       364 ~--~----~----~q~~~p-------------------~~~~l~v---~--~~~g~iEv~~earl~~l~i~~~~~~~k~~  409 (541)
T KOG4547|consen  364 A--E----V----IQEEPP-------------------LTEDLPV---L--TKGGDIEVSTEARLSALDINLTSNADKSD  409 (541)
T ss_pred             h--h----h----hcccCc-------------------chhcchh---h--hcCCcceeeehhhhhhcccccccccchhh
Confidence            0  0    0    000000                   0000000   0  1234567888999999877643321   1


Q ss_pred             CCCchhhhhhhccc---------cccccCChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcc
Q 007234          470 LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH  540 (612)
Q Consensus       470 ~~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~  540 (612)
                      ......+..|+|+|         .++..+++..|+.|+.++|++++.+||+.++.||++++.+.+.+++|+++++..|++
T Consensus       410 ~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~  489 (541)
T KOG4547|consen  410 ESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNS  489 (541)
T ss_pred             hhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcccc
Confidence            22334567788888         577888999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcChHHHHHHHHHHHHhhcccccc
Q 007234          541 HLLSQESLTPMLSSLYKVFRSASCKKTW  568 (612)
Q Consensus       541 ~l~s~~~l~~~L~~l~~~l~~r~~~~~~  568 (612)
                      |||+.|+....|..+.+...++++.-+.
T Consensus       490 yl~sv~~~~~~l~~~~~~~~~~ae~~~~  517 (541)
T KOG4547|consen  490 YLSSVPDQLETLSGKMQKDLRTAEQLGH  517 (541)
T ss_pred             eeecCcchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999777788888877778777333

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=270.02  Aligned_cols=280  Identities=15%  Similarity=0.258  Sum_probs=249.7

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ..+|..+  -|.|+-..+++++.|++|++||..+|++...+++|...+..+.|...                        
T Consensus       108 r~~vt~v--~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~------------------------  161 (406)
T KOG0295|consen  108 RSSVTRV--IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS------------------------  161 (406)
T ss_pred             ccceeee--eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC------------------------
Confidence            3567555  89999999999999999999999999999999999988888888776                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                         +.++++++.|-.+++||..+- +++ +...+|...|.++.|-|.|.++++|+.|.+|+.|++.+|.++.+|.+|...
T Consensus       162 ---Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew  237 (406)
T KOG0295|consen  162 ---GKYLATCSSDLSAKLWDFDTFFRCI-KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW  237 (406)
T ss_pred             ---ccEEEecCCccchhheeHHHHHHHH-HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh
Confidence               889999999999999999873 444 334689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC---------------CcEEEEEEcCCCeE
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYI  224 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~---------------~~~l~s~s~~d~~i  224 (612)
                      |..++.+.||.++++++  .++++|-+.++++...+.+|+.+|-+++|.|.               +.++.+++ .|++|
T Consensus       238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktI  316 (406)
T KOG0295|consen  238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTI  316 (406)
T ss_pred             EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceE
Confidence            99999999999999999  79999999999999999999999999999763               24677765 89999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccC
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS  304 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s  304 (612)
                      ++||+.++.     |++++..+...++.+.|+     |.|+||+++..|+++++||+++++.+.                
T Consensus       317 k~wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk----------------  370 (406)
T KOG0295|consen  317 KIWDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMK----------------  370 (406)
T ss_pred             EEEeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeee----------------
Confidence            999999996     678999999999999998     999999999999999999998887654                


Q ss_pred             CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                             ++..|..+|.++.|..+-.++ +|||-|.+.++|+.
T Consensus       371 ---------------------------------------~~~ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  371 ---------------------------------------TLEAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC  405 (406)
T ss_pred             ---------------------------------------ccCCCcceeEEEecCCCCceE-Eeccccceeeeeec
Confidence                                                   223456678888888888898 99999999999964

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=249.97  Aligned_cols=272  Identities=14%  Similarity=0.205  Sum_probs=220.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~   97 (612)
                      -+||++|.|.+||+|...+|.|..+++...+.|+.+...++                           +..|+ +.....
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~~LA-aa~~qh   62 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KKDLA-AAGNQH   62 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cchhh-hccCCe
Confidence            48999999999999999999999999877777776666655                           44444 445678


Q ss_pred             EEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE
Q 007234           98 VLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA  175 (612)
Q Consensus        98 I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  175 (612)
                      |++||++++..  +..+ ++|+..|+++.|..+|+.+++||.||++++||++...+.+.++ +..+|+++..+|+...|+
T Consensus        63 vRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   63 VRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             eEEEEccCCCCCceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence            99999998865  4444 7899999999999999999999999999999999977777776 568999999999999999


Q ss_pred             EeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-ceeeEeec-CCceeE
Q 007234          176 TAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFM  250 (612)
Q Consensus       176 ~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~  250 (612)
                      +|+  |.|++||+.+..+...+ +....+|.++...|||++++.+. ..|.+++|++-.....+ ..++..+. |...++
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEE
Confidence            998  99999999988766555 34456899999999999998886 68999999997754321 12233344 444444


Q ss_pred             EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceE
Q 007234          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT  330 (612)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~  330 (612)
                      . +-++     ||+++|++++.|.+++||+.++.  ++                                          
T Consensus       220 ~-C~lS-----Pd~k~lat~ssdktv~iwn~~~~--~k------------------------------------------  249 (311)
T KOG0315|consen  220 R-CLLS-----PDVKYLATCSSDKTVKIWNTDDF--FK------------------------------------------  249 (311)
T ss_pred             E-EEEC-----CCCcEEEeecCCceEEEEecCCc--ee------------------------------------------
Confidence            4 4465     99999999999999999987654  10                                          


Q ss_pred             EEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       331 ~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                .-..+.+|...+|.++||.||.|| +|||.|...|+|++..
T Consensus       250 ----------le~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  250 ----------LELVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLSA  289 (311)
T ss_pred             ----------eEEEeecCCceEEeeeeccCccEE-EecCCCCceeeccccc
Confidence                      001456777799999999999999 9999999999999843

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-32  Score=265.50  Aligned_cols=362  Identities=17%  Similarity=0.174  Sum_probs=262.0

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccc----ccc-ccceeEEEeee
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----EHL-SVDYTCMKWLS   75 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~----~~~-~~~~~~~~w~~   75 (612)
                      +.+++..  .|||.|.|+|+|...|+|||||+...+  +..+|+...+++..+.|+.+-..    |.- ..-.....|.+
T Consensus        59 ~~~vtVA--kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS  136 (603)
T KOG0318|consen   59 AHQVTVA--KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS  136 (603)
T ss_pred             cceeEEE--EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence            4455434  999999999999999999999987633  45678888999999999876211    111 11223345554


Q ss_pred             ccccc-------------ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEE
Q 007234           76 VDRKK-------------KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC  142 (612)
Q Consensus        76 ~~~~~-------------~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~  142 (612)
                      .+...             .++...-.+++|+.|+.|.+|+=.--+....+ ..|..-|+|+.|+|||..|++++.||+|.
T Consensus       137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEE
Confidence            33110             11222557999999999999986554444444 56999999999999999999999999999


Q ss_pred             EEECCCCceeEEEe---cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE------------------------
Q 007234          143 EIDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------  193 (612)
Q Consensus       143 iwd~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~------------------------  193 (612)
                      +||=.+|+.+..+.   +|.+.|.+++|+||++.+++++  .+++|||+.+.++++                        
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt  295 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT  295 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence            99999999999998   7999999999999999999998  799999997665443                        


Q ss_pred             -------------------EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc------eee--------
Q 007234          194 -------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------SCV--------  240 (612)
Q Consensus       194 -------------------~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~------~~~--------  240 (612)
                                         .+.||...|+++..+|++++|++++ .||.|.-|+..++.....      ..+        
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES  374 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCC
Confidence                               3458999999999999999999997 799999999876542100      000        


Q ss_pred             ---E------------------------eecCCcee--------EEeE-Eec---------------------CCccCCC
Q 007234          241 ---L------------------------AMEHPAVF--------MDCR-CID---------------------NGGVDDA  263 (612)
Q Consensus       241 ---~------------------------~~~~~~~~--------~~~~-~~~---------------------~~~~~~~  263 (612)
                         +                        .+.++...        +..+ +.+                     ...++|+
T Consensus       375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~  454 (603)
T KOG0318|consen  375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD  454 (603)
T ss_pred             CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence               0                        00000000        0000 000                     0134699


Q ss_pred             CcEEEEEecCCcEEEEECCCcceecc--cCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCce
Q 007234          264 GLYVLAISETGVCYIWYGQNIEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPS  341 (612)
Q Consensus       264 ~~~l~t~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~  341 (612)
                      +..+++|+.||.|++|.+..++....  ...++-.++... ++|+++    +++++...+.+       ++.+-...+..
T Consensus       455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~----yla~~Da~rkv-------v~yd~~s~~~~  522 (603)
T KOG0318|consen  455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGA----YLAAGDASRKV-------VLYDVASREVK  522 (603)
T ss_pred             CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCc----EEEEeccCCcE-------EEEEcccCcee
Confidence            99999999999999999877654322  112222223222 899988    88888875533       33333333344


Q ss_pred             EEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          342 FQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       342 ~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      .....+|+..|.+++|||+.+.+ +|||-|..+.+|++.+
T Consensus       523 ~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  523 TNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKK  561 (603)
T ss_pred             cceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccC
Confidence            55677899999999999999999 9999999999999854

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.4e-35  Score=276.70  Aligned_cols=238  Identities=16%  Similarity=0.203  Sum_probs=214.6

Q ss_pred             CCcccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |.+.|.  ++.|+|.  +.-+|+|+.||++++|++.+...+..+.+|...|....|.++                     
T Consensus       216 H~~~v~--~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs---------------------  272 (459)
T KOG0272|consen  216 HTSRVG--AAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS---------------------  272 (459)
T ss_pred             ccccee--eEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC---------------------
Confidence            345664  4599997  568999999999999999999999999999888888888877                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                            |++|++++-|.+-++||+.++..+.. ..||...|.+++|+|||..++|||.|..-++||+++|+++..+.+|.
T Consensus       273 ------G~~L~TasfD~tWRlWD~~tk~ElL~-QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~  345 (459)
T KOG0272|consen  273 ------GKFLGTASFDSTWRLWDLETKSELLL-QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI  345 (459)
T ss_pred             ------CceeeecccccchhhcccccchhhHh-hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence                  99999999999999999999988743 47999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      .+|.+++|+|+|..||+|+  ++++|||++..+.+.++++|.+-|+.+.|+| .|.+|++++ .|+++++|...+..+. 
T Consensus       346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~~-  423 (459)
T KOG0272|consen  346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSPL-  423 (459)
T ss_pred             cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCcccc-
Confidence            9999999999999999999  8999999999999999999999999999999 677888887 7999999999888743 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                          ..+..+..-+.++.++     +|+.++++++.|+++++|.
T Consensus       424 ----ksLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  424 ----KSLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ----hhhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence                5556666666667776     9999999999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.2e-34  Score=272.96  Aligned_cols=281  Identities=14%  Similarity=0.177  Sum_probs=232.0

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      -+|..+  .|.|+|+.|++|+..|.+.+|+..+......++.|.+.|.                  ++.|.+.       
T Consensus        97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr------------------~m~ws~~-------  149 (464)
T KOG0284|consen   97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR------------------TMKWSHN-------  149 (464)
T ss_pred             cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce------------------eEEEccC-------
Confidence            367666  9999999999999999999999854443333455555555                  4445443       


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                        +..+++|+.+|.|++|++..+... .+...|...|++++|+|+...|++||.||+|++||....+..+.+.+|...|.
T Consensus       150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence              889999999999999999877664 33344569999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      |+.|+|...++++++  +.|++||.+++.++.++.+|...|..+.|+|++++|+++| .|..++++|+++-+..     +
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl-----~  300 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKEL-----F  300 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHH-----H
Confidence            999999999999999  8999999999999999999999999999999999999997 8999999999965533     4


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccc
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~  321 (612)
                      ....+...+..+.+.+    -...+|.+|+.||.|..|.+...+.+..                                
T Consensus       301 ~~r~Hkkdv~~~~WhP----~~~~lftsgg~Dgsvvh~~v~~~~p~~~--------------------------------  344 (464)
T KOG0284|consen  301 TYRGHKKDVTSLTWHP----LNESLFTSGGSDGSVVHWVVGLEEPLGE--------------------------------  344 (464)
T ss_pred             Hhhcchhhheeecccc----ccccceeeccCCCceEEEeccccccccC--------------------------------
Confidence            5554555555565653    3457899999999999998762222110                                


Q ss_pred             eecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                            --..|...|++++|.|=|..| ++||.|+++|+|..
T Consensus       345 ----------------------i~~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  345 ----------------------IPPAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR  379 (464)
T ss_pred             ----------------------CCcccccceeeeeccccceeE-eecCCCcceeeecc
Confidence                                  112477799999999999999 99999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-32  Score=247.57  Aligned_cols=243  Identities=16%  Similarity=0.195  Sum_probs=204.8

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +--|..+  +.++||++.++++.|+++++||+.+|+..+.|.+|...|.+.+|+++                        
T Consensus        63 sH~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------------------------  116 (315)
T KOG0279|consen   63 SHFVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------------------------  116 (315)
T ss_pred             ceEecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------------------------
Confidence            3456666  99999999999999999999999999999999999999998888888                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                         ++.|++|+.|.+|++||+..+.........|.+-|+|++|+|+  ..+++++|.|++|++||+++.+....+.+|.+
T Consensus       117 ---n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~  193 (315)
T KOG0279|consen  117 ---NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG  193 (315)
T ss_pred             ---CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence               8899999999999999998776664444445889999999997  78899999999999999999999999999999


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      .++.+++||||.++++|+  |.+.+||++.++.+..+. |...|.+++|+|+...|+.+  .+..|+|||+.++......
T Consensus       194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhc
Confidence            999999999999999998  899999999999988875 88999999999988666654  4667999999987654110


Q ss_pred             eeEe----ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          239 CVLA----MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       239 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      ....    ..........++|+     +||..|++|-.|+.|++|.+.
T Consensus       271 ~~d~~g~s~~~~~~~clslaws-----~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLSLAWS-----ADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccccccccccCCcEEEEEEEc-----CCCcEEEeeecCCcEEEEEee
Confidence            0000    11112233345555     899999999999999999764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=256.73  Aligned_cols=284  Identities=14%  Similarity=0.210  Sum_probs=242.5

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      =||++  ++.|-+++|++|+.|++++|||+.+|++..++.+|...+..+.++..                          
T Consensus       153 WVr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r--------------------------  204 (460)
T KOG0285|consen  153 WVRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR--------------------------  204 (460)
T ss_pred             eEEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc--------------------------
Confidence            36655  99999999999999999999999999999999999998888888876                          


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                       ..++++++.|+.|+-||++.++.++.+ .+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.+
T Consensus       205 -HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~  282 (460)
T KOG0285|consen  205 -HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS  282 (460)
T ss_pred             -CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence             778999999999999999999999777 689999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      +.+.|-...+++|+  ++|++||++.|+....+..|...|.+++.+|....+++++ .| .|+-|++..+...     ..
T Consensus       283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~n  355 (460)
T KOG0285|consen  283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----QN  355 (460)
T ss_pred             EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----hc
Confidence            99999888999998  8999999999999999999999999999999998888876 45 6999999988744     34


Q ss_pred             ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccce
Q 007234          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~  322 (612)
                      +..+..++..+...     . ..++++|+..|.|.+||.++|-..+..+..                    +--|+.+  
T Consensus       356 lsgh~~iintl~~n-----s-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~--------------------vqpGSl~--  407 (460)
T KOG0285|consen  356 LSGHNAIINTLSVN-----S-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTI--------------------VQPGSLE--  407 (460)
T ss_pred             cccccceeeeeeec-----c-CceEEEcCCceEEEEEecCcCccccccccc--------------------ccCCccc--
Confidence            55666677777664     3 467899999999999999888654322111                    0011111  


Q ss_pred             ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                               ....|.+.+|...|.-| +||..|++|++|.-
T Consensus       408 -------------------------sEagI~as~fDktg~rl-it~eadKtIk~~ke  438 (460)
T KOG0285|consen  408 -------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKE  438 (460)
T ss_pred             -------------------------cccceeEEeecccCceE-EeccCCcceEEEec
Confidence                                     11257788899999999 99999999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.9e-33  Score=283.37  Aligned_cols=238  Identities=14%  Similarity=0.213  Sum_probs=210.1

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------EEEEeeccCCccccccccc
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-------------------------------VQTEFADIASTETTSLYGN   57 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~-------------------------------~~~~~~~~~~~~~~~~~s~   57 (612)
                      .|+.||+|+.+||.|..|..|++|.+...+                               ...++.+|.++|....|++
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            577999999999999999999999987422                               1123445555555555555


Q ss_pred             cccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec
Q 007234           58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA  137 (612)
Q Consensus        58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~  137 (612)
                      +                           .++|++++.|++|++|.+.+..++..+ .+|..+|+++.|+|.|-+|+|||.
T Consensus       462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             c---------------------------ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence            5                           889999999999999999999998777 599999999999999999999999


Q ss_pred             CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      |++-++|.....++++.|.+|-..|.|+.|+|++.++++|+  .+|++||+.+|..++.|.||.++|.+++|||+|++|+
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence            99999999999999999999999999999999999999999  8999999999999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      +++ .|+.|.+||+.++...     ..+..+...+..+.|+     .+|..||+|+.|++|++||+....
T Consensus       594 Sg~-ed~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  594 SGD-EDGLIKIWDLANGSLV-----KQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ecc-cCCcEEEEEcCCCcch-----hhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence            997 7999999999998754     2333447777888898     999999999999999999976543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-31  Score=280.39  Aligned_cols=277  Identities=23%  Similarity=0.333  Sum_probs=231.8

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      .|+.|||||+++++++.|+.+++|+..+++  ...++.+|...+..+.|+++                           +
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d---------------------------~  215 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD---------------------------G  215 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC---------------------------C
Confidence            456999999999999999999999998887  77777778777777777776                           8


Q ss_pred             cEEEEEECCCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           87 SLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      .++++|+.|++|+|||+. .+..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|..+|+++
T Consensus       216 ~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~  294 (456)
T KOG0266|consen  216 SYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL  294 (456)
T ss_pred             cEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence            899999999999999994 44666566 6999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCe--eEEEEecCCCC--EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~--v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +|++++.++++++  +.|++||+.++.  ++..+.++..+  ++++.|+|++.++++++ .|+.+++||+..+...   .
T Consensus       295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~---~  370 (456)
T KOG0266|consen  295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSV---G  370 (456)
T ss_pred             EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcce---e
Confidence            9999999999998  999999999998  66788777766  99999999999999997 7999999999988644   1


Q ss_pred             eEeecCCce--eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          240 VLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       240 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                      .+ ..|...  .+.....     .+++.++++|+.|+.|++||..++..+.                             
T Consensus       371 ~~-~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~-----------------------------  415 (456)
T KOG0266|consen  371 TY-TGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQ-----------------------------  415 (456)
T ss_pred             ee-cccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhh-----------------------------
Confidence            11 123332  2222222     3899999999999999999987765432                             


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeecc-CCCeEEEEecCCCceEecccc--ceeeecceee
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV  379 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~l~~S~dg~~l~~s~s--~d~~~~~w~~  379 (612)
                                                .+.+| ...+..+++++...++ ++++  .|+.+++|..
T Consensus       416 --------------------------~l~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  416 --------------------------RLEGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY  453 (456)
T ss_pred             --------------------------hhcCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence                                      23344 4467778888888888 7777  7888999964

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.8e-31  Score=241.86  Aligned_cols=233  Identities=17%  Similarity=0.262  Sum_probs=207.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            8 DILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+.|+|+|.|+++|+|+-|+...||++.+.      ...+++.+|.+.+.++.|..+                       
T Consensus       100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-----------------------  156 (343)
T KOG0286|consen  100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-----------------------  156 (343)
T ss_pred             EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-----------------------
Confidence            378999999999999999999999999855      355667777777666666543                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                           ..|++++.|.+..+||+++|+.+..+ .+|.+.|.+++++| +++.|++|+-|++.++||++.+.++++|.+|+.
T Consensus       157 -----~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes  230 (343)
T KOG0286|consen  157 -----NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES  230 (343)
T ss_pred             -----CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc
Confidence                 56899999999999999999999777 68999999999999 999999999999999999999999999999999


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      .|++++|.|+|.-+++|+  +++++||++..+.+..+..  -..+|++++||-.|++|+++. .|.++.+||.-.++.. 
T Consensus       231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~v-  308 (343)
T KOG0286|consen  231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERV-  308 (343)
T ss_pred             ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceE-
Confidence            999999999999999999  8999999999998888862  235799999999999999886 7999999998887643 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                          -.+..+..-++++..+     |||..+++|+.|.+++||.
T Consensus       309 ----g~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  309 ----GVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ----EEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence                4556778888888887     9999999999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.9e-31  Score=265.61  Aligned_cols=326  Identities=16%  Similarity=0.200  Sum_probs=269.0

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ...|.  ++.||.|.++|++||.|-+++||.+...+-  ...+.+|...|..+.|..+                      
T Consensus       145 fddi~--si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~----------------------  200 (893)
T KOG0291|consen  145 FDDIT--SIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN----------------------  200 (893)
T ss_pred             cccee--EEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC----------------------
Confidence            34664  459999999999999999999999986665  5667788887777777766                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCC-----------------------CeE-----EE-----EeccCCCCCeEEEEEec
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSA-----------------------GQL-----KW-----RLSDCHPGGVSAISFAT  127 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~-----------------------~~~-----~~-----~~~~~h~~~V~~l~~sp  127 (612)
                           ..-+++.+.||.+.+|....                       ++.     .+     .++......|++.+|++
T Consensus       201 -----~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~  275 (893)
T KOG0291|consen  201 -----SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK  275 (893)
T ss_pred             -----cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence                 56689999999999998761                       111     11     12223347899999999


Q ss_pred             CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEE
Q 007234          128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (612)
Q Consensus       128 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~  204 (612)
                      ..+.|++|-..|...++++....+++.+.....+|..++|+..|.++|.|+   |.+-+|+.++..-+.+.+||...+++
T Consensus       276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~  355 (893)
T KOG0291|consen  276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS  355 (893)
T ss_pred             CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence            999999999999999999999999999998888999999999999999998   79999999999989999999999999


Q ss_pred             EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ++++|||+++++++ .||.|+|||...+-     |..++..|...++.+.|.     ..|+.+++.|.||+|+.||+...
T Consensus       356 l~YSpDgq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  356 LAYSPDGQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             EEECCCCcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeeccc
Confidence            99999999999998 79999999998876     667888888888899998     89999999999999999999999


Q ss_pred             ceecccCCc-eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCce
Q 007234          285 EELRNTKAT-KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL  363 (612)
Q Consensus       285 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~  363 (612)
                      +..+++..+ ..+..|.. ..|.+.    .+.+|+.|.    ++..+|..   ......+.+.+|.++|.+++|+|+|..
T Consensus       425 rNfRTft~P~p~Qfscva-vD~sGe----lV~AG~~d~----F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVA-VDPSGE----LVCAGAQDS----FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             ceeeeecCCCceeeeEEE-EcCCCC----EEEeeccce----EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCe
Confidence            888887744 33444433 344454    677777764    23333332   234556688999999999999999999


Q ss_pred             Eeccccceeeecceeeec
Q 007234          364 LPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       364 l~~s~s~d~~~~~w~~~~  381 (612)
                      | +|+|.|+++|+|++-+
T Consensus       493 L-aS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  493 L-ASGSWDKTVRIWDIFS  509 (893)
T ss_pred             E-EeccccceEEEEEeec
Confidence            9 9999999999999743

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3e-30  Score=255.75  Aligned_cols=280  Identities=23%  Similarity=0.312  Sum_probs=232.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|.++  +|+|++++|++++.||.|++||..+++....+..|...+.                  .+.|.+.     
T Consensus         8 h~~~i~~~--~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~-----   62 (289)
T cd00200           8 HTGGVTCV--AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------------------DVAASAD-----   62 (289)
T ss_pred             cCCCEEEE--EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee------------------EEEECCC-----
Confidence            46788655  9999999999999999999999999887777766555443                  3444432     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          ++.+++++.+|.|.+|++.+++....+ ..|...|.++.|+|+++++++++.|+.|++||+.+++....+..|...
T Consensus        63 ----~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 ----GTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             ----CCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence                678999999999999999988777666 468889999999999888888888999999999999999999888889


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +.+++|+|++.++++++  |.|++||+++++.+..+..|...+.++.|+|+++.+++++ .|+.+++||+..++..    
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~----  212 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL----  212 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee----
Confidence            99999999999999886  8999999999999999999999999999999999898887 5999999999876533    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~  319 (612)
                       ..+..+...+..+.+.     +++.++++++.||.|++|+..+++.+.                               
T Consensus       213 -~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~-------------------------------  255 (289)
T cd00200         213 -GTLRGHENGVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ-------------------------------  255 (289)
T ss_pred             -cchhhcCCceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence             3332333355667776     888888888889999999986643321                               


Q ss_pred             cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                              .+..|...+.+++|+++|.++ ++++.|+.+++|+
T Consensus       256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~  289 (289)
T cd00200         256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD  289 (289)
T ss_pred             ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence                                    122455578899999999999 9999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-30  Score=244.56  Aligned_cols=326  Identities=14%  Similarity=0.119  Sum_probs=259.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+.+|  .+++.+|+.+++|+|+.|..-.+|++.+|....++.+|...|.++.|+++                       
T Consensus        63 H~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-----------------------  117 (399)
T KOG0296|consen   63 HTDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-----------------------  117 (399)
T ss_pred             cCCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-----------------------
Confidence            56778  56699999999999999999999999999999999999999999999988                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.+|++|..+|.|+||...++...+.+. .....+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..+
T Consensus       118 ----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  118 ----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ----ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence                9999999999999999999999988885 35677899999999999999999999999999998888999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc-
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA-  237 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~-  237 (612)
                      +++=.|.|||+.++++.  |+|++||+++++++..+.+. ..+..++.++..+..++.+. .++.+.+-...+++...- 
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEec
Confidence            99999999999999998  99999999999998888633 33566788888888777775 688887777666653310 


Q ss_pred             -----eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234          238 -----SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (612)
Q Consensus       238 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  312 (612)
                           .......+....+..+.++     ..=.+.|+|+.||+|.|||+...+......-... +... .|.+ .+    
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-V~~l-~w~~-t~----  339 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-VTKL-KWLN-TD----  339 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCc-eEEE-EEcC-cc----
Confidence                 0001111222333333333     4446788899999999999887655432222111 2111 1343 23    


Q ss_pred             hhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      ++++++.+|.++.||    ...|    ...-+..+|...|..++++||++++ +|+|.|++.++.++
T Consensus       340 ~l~t~c~~g~v~~wD----aRtG----~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  340 YLLTACANGKVRQWD----ARTG----QLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV  397 (399)
T ss_pred             hheeeccCceEEeee----cccc----ceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence            899999999999888    2233    3334888999999999999999999 99999999999876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.1e-31  Score=241.08  Aligned_cols=283  Identities=14%  Similarity=0.192  Sum_probs=231.8

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+.|..  +.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.|..+.|..+                       
T Consensus        47 ~geI~~--~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-----------------------  101 (338)
T KOG0265|consen   47 KGEIYT--IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-----------------------  101 (338)
T ss_pred             cceEEE--EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence            567754  4999999999999999999999954 44556777888888877777776                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                          ++.|++++.|.+|+.||+++|++.+++ ++|.+-|+.+.-+.-|. ++.+++.|+++++||+++...++++. ...
T Consensus       102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky  175 (338)
T KOG0265|consen  102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY  175 (338)
T ss_pred             ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence                889999999999999999999999887 67999999998665554 46788899999999999999888876 356


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      .++++.|..++..+.+|+  +.|++||++.+.....+.||..+|+.+..+|+|.++++-+ .|.++++||++..... ..
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R  253 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR  253 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence            899999999999999999  8999999999999999999999999999999999999987 6999999999865433 12


Q ss_pred             eeEeecC--CceeEE--eEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234          239 CVLAMEH--PAVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (612)
Q Consensus       239 ~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i  314 (612)
                      ++..+..  +.....  .+.++     |++..+.+|+.|+.+++||......+.                          
T Consensus       254 ~v~if~g~~hnfeknlL~csws-----p~~~~i~ags~dr~vyvwd~~~r~~ly--------------------------  302 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWS-----PNGTKITAGSADRFVYVWDTTSRRILY--------------------------  302 (338)
T ss_pred             eEEEeecchhhhhhhcceeecc-----CCCCccccccccceEEEeecccccEEE--------------------------
Confidence            3333322  111111  22343     999999999999999999864332211                          


Q ss_pred             hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                   .+.+|.+.|.++.|.|...++ .+++.|+++.+-++
T Consensus       303 -----------------------------klpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei  337 (338)
T KOG0265|consen  303 -----------------------------KLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI  337 (338)
T ss_pred             -----------------------------EcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence                                         566888899999999999999 99999999877543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-30  Score=251.48  Aligned_cols=336  Identities=16%  Similarity=0.207  Sum_probs=256.8

Q ss_pred             CCcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCC--c--EEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234            2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKG--Q--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~--~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      +.++|  ++++|+|-.. .+|+|+.|-..++|++...  .  .+..++        ..+...........++|++.|...
T Consensus       177 ~~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdVT~L~Wn~~  246 (524)
T KOG0273|consen  177 HESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDVTSLDWNND  246 (524)
T ss_pred             CCCce--EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCcceEEecCC
Confidence            35667  7899999776 8999999999999998641  1  111111        111111112333578999999876


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                               |.+|++|+.+|.+++|+...+.. ..+ ..|.++|.++.|+..|.+|++++.|+++.+||..+|...+.|.
T Consensus       247 ---------G~~LatG~~~G~~riw~~~G~l~-~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  247 ---------GTLLATGSEDGEARIWNKDGNLI-STL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             ---------CCeEEEeecCcEEEEEecCchhh-hhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence                     89999999999999999865544 244 5799999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .|..+-..+.|-.+..+..++. |.|+++-+....++.++.||.++|.++.|.|.|.+|++++ .|++++||........
T Consensus       316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSV  394 (524)
T ss_pred             eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcch
Confidence            8888877889986655554444 9999999999999999999999999999999999999987 7999999997665422


Q ss_pred             cceeeEeecCCceeEEeEEecCC-c--cC-CCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccc
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNG-G--VD-DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  311 (612)
                           ..+..+...+-.+.+++. .  .+ ..+..+++++.|++|++||+..+.++..+..++..+.... |+|+++   
T Consensus       395 -----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~---  465 (524)
T KOG0273|consen  395 -----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR---  465 (524)
T ss_pred             -----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc---
Confidence                 233333333333444421 1  11 2457899999999999999999999988877766666555 899999   


Q ss_pred             hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                       ++++|++++++-+|+        ......++...+. +.|..++|+.+|.+|.++. .|+++++-++
T Consensus       466 -ylAsGs~dg~V~iws--------~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~-sd~~vcvldl  522 (524)
T KOG0273|consen  466 -YLASGSLDGCVHIWS--------TKTGKLVKSYQGT-GGIFELCWNAAGDKLGACA-SDGSVCVLDL  522 (524)
T ss_pred             -EEEecCCCCeeEecc--------ccchheeEeecCC-CeEEEEEEcCCCCEEEEEe-cCCCceEEEe
Confidence             999999999888877        2333334444333 3589999999999994444 4777776554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-30  Score=232.57  Aligned_cols=249  Identities=17%  Similarity=0.274  Sum_probs=209.3

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      .+.|+.|  ...||+.+||+++.. .||+||+.++.  .+.+|.+|...|..+.|..+                      
T Consensus        40 dsqVNrL--eiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----------------------   94 (311)
T KOG0315|consen   40 DSQVNRL--EITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----------------------   94 (311)
T ss_pred             ccceeeE--EEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence            4678777  999999999999865 69999999876  58899999998888888887                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-CC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST  159 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~  159 (612)
                           ++.+++|+.||+++|||++.-.+.+.+  .|.++|+++..+|+...|++|..+|.|++||+....+...+-. ..
T Consensus        95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence                 899999999999999999996665444  4889999999999988999999999999999988877666443 34


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCC------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .+|.++.+.|||++++++.  |..++|++-+.      +++.+++.|.+.+..+.+|||+++|++++ .|.+++||+.++
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~  246 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDD  246 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCC
Confidence            5899999999999999988  99999998654      45778899999999999999999999998 699999999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      --+    ....+..+...+--..|+     .||.+|++++.|+.+++|++..++.++..+++
T Consensus       247 ~~k----le~~l~gh~rWvWdc~FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  247 FFK----LELVLTGHQRWVWDCAFS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             cee----eEEEeecCCceEEeeeec-----cCccEEEecCCCCceeecccccCceeeecCCc
Confidence            721    123334343333344565     89999999999999999999999987765544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=2.3e-31  Score=272.72  Aligned_cols=201  Identities=18%  Similarity=0.315  Sum_probs=190.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |++||...  +|+|+.++|++||.|+++|+|.+.+..++-.+++|..+|....|++-                       
T Consensus       450 H~GPVyg~--sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-----------------------  504 (707)
T KOG0263|consen  450 HSGPVYGC--SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-----------------------  504 (707)
T ss_pred             CCCceeee--eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------------------
Confidence            57899655  99999999999999999999999999999999999999998888876                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          |-++++|+.|++.++|.......++. +.+|-+.|.|+.|+|++.++++||.|.+|++||+.+|..++.|.+|.++
T Consensus       505 ----GyYFatas~D~tArLWs~d~~~PlRi-faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  505 ----GYYFATASHDQTARLWSTDHNKPLRI-FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP  579 (707)
T ss_pred             ----ceEEEecCCCceeeeeecccCCchhh-hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence                88999999999999999999888744 4789999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      |.+++|+|+|++|++|+  |.|.+||+.+++.+..+.+|++.|.++.|+.+|..|+++| .|.+|++||+....
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI  652 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence            99999999999999999  9999999999999999999999999999999999999998 79999999987654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.3e-31  Score=251.46  Aligned_cols=284  Identities=16%  Similarity=0.182  Sum_probs=229.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      |+..|+.+  .||++|+|||+++.|.+.-||++....   ...++.+|..+|.-+.|+|+                    
T Consensus       223 htdEVWfl--~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--------------------  280 (519)
T KOG0293|consen  223 HTDEVWFL--QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--------------------  280 (519)
T ss_pred             CCCcEEEE--EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--------------------
Confidence            45678555  999999999999999999999875443   46777778777776666666                    


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                             .+++++|+.+..+.+||+.+|.....+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++.
T Consensus       281 -------dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv  352 (519)
T KOG0293|consen  281 -------DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV  352 (519)
T ss_pred             -------CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccc
Confidence                   78899999999999999999999888877778899999999999999999999999999975 6666667665


Q ss_pred             CC-CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          159 TK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       159 ~~-~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .. .|.++++++||+++++..  ..|++|+..+........ ...+|+++..|.+++++++.- .+..+++||+......
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv  430 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLV  430 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHH
Confidence            43 699999999999998776  799999988765554443 567899999999999888875 7999999999965533


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                      .   .+.......++-..||.    ..+..++++||+|+.|+||+..+++.+.                           
T Consensus       431 ~---kY~Ghkq~~fiIrSCFg----g~~~~fiaSGSED~kvyIWhr~sgkll~---------------------------  476 (519)
T KOG0293|consen  431 R---KYFGHKQGHFIIRSCFG----GGNDKFIASGSEDSKVYIWHRISGKLLA---------------------------  476 (519)
T ss_pred             H---HhhcccccceEEEeccC----CCCcceEEecCCCceEEEEEccCCceeE---------------------------
Confidence            1   11111223333344554    2566899999999999999987776542                           


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                  .+.+|...|.+++|+|......+|+|+|+++|+|..
T Consensus       477 ----------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  477 ----------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             ----------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence                                        566788899999999988876699999999999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.2e-29  Score=287.03  Aligned_cols=304  Identities=15%  Similarity=0.161  Sum_probs=227.7

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ...|.++  +|+|+|++||+|+.|+.|+|||..+...... ..+ ..+.  .     ..+  .....++.|.+..     
T Consensus       483 ~~~V~~i--~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~-~~~~--~-----~~~--~~~v~~l~~~~~~-----  544 (793)
T PLN00181        483 SNLVCAI--GFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH-YPVV--E-----LAS--RSKLSGICWNSYI-----  544 (793)
T ss_pred             CCcEEEE--EECCCCCEEEEEeCCCEEEEEECCccccccc-ccc-cceE--E-----ecc--cCceeeEEeccCC-----
Confidence            4567544  9999999999999999999999764210000 000 0000  0     001  2345678887765     


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                         +.++++++.||.|++||+.+++.+..+ .+|...|++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..
T Consensus       545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence               678999999999999999999888666 67999999999997 7889999999999999999999998888754 67


Q ss_pred             eeEEEEC-CCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc-c
Q 007234          162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S  236 (612)
Q Consensus       162 v~~l~~s-pdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~-~  236 (612)
                      +.++.|+ ++|.++++|+  |.|++||+++++ .+..+.+|...|.++.|. ++.++++++ .|++|++||+...... .
T Consensus       620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence            8999995 5799999998  899999998865 567788999999999997 677888887 7999999999754210 1


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                      ..++..+..+...+..+.++     +++.+|++|+.||.|++|+......+....           +.....     +  
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~--  754 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V--  754 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence            12344555566666777787     899999999999999999975543221110           000000     0  


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                       .+       .....|...|.+++|+++|..| ++|+.|+.+++|++
T Consensus       755 -----------------~~-------~~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~  792 (793)
T PLN00181        755 -----------------SG-------LEVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM  792 (793)
T ss_pred             -----------------cc-------cccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence                             00       0112345579999999999999 99999999999975

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=228.84  Aligned_cols=246  Identities=18%  Similarity=0.342  Sum_probs=208.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++++|+.+  .|+-||+|.++|+.|.+|++||...|.+++++.+|...+.....+.+                       
T Consensus        16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-----------------------   70 (307)
T KOG0316|consen   16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-----------------------   70 (307)
T ss_pred             cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence            46789766  99999999999999999999999999999999999988876666655                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC--ceeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~  159 (612)
                          +..+++|+.|..|.+||+++|+..+++ .+|.+.|+.+.|+.+...+++|+.|.++++||.++.  ++++.+....
T Consensus        71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence                677999999999999999999999887 689999999999999999999999999999999754  7888898888


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ..|.++.++  +..+++|+  |+++.||++.|+.....-||  ||+++.|++|++..+.++ -|+++++.|-.+++... 
T Consensus       146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~-  219 (307)
T KOG0316|consen  146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLK-  219 (307)
T ss_pred             CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEee-ccceeeecccchhHHHH-
Confidence            899999987  55777777  99999999999877666554  799999999999999887 69999999999998652 


Q ss_pred             eeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          238 SCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       238 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                        .+. .|.  ..-+. .++.     ....++++|++||.+++||+....++.....
T Consensus       220 --sYk-Ghkn~eykld-c~l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  220 --SYK-GHKNMEYKLD-CCLN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             --Hhc-ccccceeeee-eeec-----ccceeEEeccCCceEEEEEeccceeeeeecc
Confidence              121 222  22233 2343     5668999999999999999988887755443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=255.88  Aligned_cols=247  Identities=15%  Similarity=0.253  Sum_probs=219.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++..|+++  .|+|...++.++-..|.|.|||.++...++.|....-++....|-..                       
T Consensus        12 rSdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR-----------------------   66 (794)
T KOG0276|consen   12 RSDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR-----------------------   66 (794)
T ss_pred             cCCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec-----------------------
Confidence            35567666  99999999999999999999999999999999876666665555444                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~  160 (612)
                          .+.+++|+.|+.|+||+..+++.+..+ .+|..-|.+++.+|...+++|+|.|-+|++||.+.. .+.++|.+|..
T Consensus        67 ----knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   67 ----KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             ----cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence                677999999999999999999999777 689999999999999999999999999999999765 78899999999


Q ss_pred             CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC--cEEEEEEcCCCeEEEEEcCCCccc
Q 007234          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~--~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      -|.+++|+| |.+.+++++  ++|++|.+.+..+..++.||...|+++.|-+.|  .+|++++ +|.+++|||..+..  
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~--  218 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS--  218 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH--
Confidence            999999999 778899998  899999999999999999999999999998744  6999987 79999999999876  


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                         |+.++..+..-++.++|.     |.=..+++|++||+++||+..+.++-..
T Consensus       219 ---CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  219 ---CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             ---HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhh
Confidence               667888888888899997     8889999999999999999888765443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.5e-31  Score=243.75  Aligned_cols=275  Identities=20%  Similarity=0.287  Sum_probs=226.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee--------ccCCccccccccccccccccccceeEEEeeecccccc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA--------DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |..|||||+||++|+.||-|.|||..+|+..+.++        -+...+.|+.|+.+                       
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-----------------------  274 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-----------------------  274 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-----------------------
Confidence            56999999999999999999999999998765443        23344444445444                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          ...+++|+.||.|++|.+.+|.|++++..+|+..|+|+.|+.|+..+++++.|.++++.-+++|+++..|++|...
T Consensus       275 ----sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy  350 (508)
T KOG0275|consen  275 ----SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY  350 (508)
T ss_pred             ----HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc
Confidence                7789999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      |+...|.+||.++++++  |+|++|+.++.+++.+|+  +...+|+++..-|.+ ..++.|. ..+++.+.++...-.. 
T Consensus       351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVr-  428 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVR-  428 (508)
T ss_pred             ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEe-
Confidence            99999999999999988  999999999999988885  445678888877754 4666665 6889999888764322 


Q ss_pred             ceeeEee--cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234          237 ASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (612)
Q Consensus       237 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i  314 (612)
                         .+..  .....++. ++.+     |.|.++.+.++|+.++.|...+|..-+                          
T Consensus       429 ---sfsSGkREgGdFi~-~~lS-----pkGewiYcigED~vlYCF~~~sG~LE~--------------------------  473 (508)
T KOG0275|consen  429 ---SFSSGKREGGDFIN-AILS-----PKGEWIYCIGEDGVLYCFSVLSGKLER--------------------------  473 (508)
T ss_pred             ---eeccCCccCCceEE-EEec-----CCCcEEEEEccCcEEEEEEeecCceee--------------------------
Confidence               1111  12334444 3344     999999999999999999876664421                          


Q ss_pred             hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                   ++..|...|+.++-.|...+| +|-|.|+..++|.
T Consensus       474 -----------------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk  507 (508)
T KOG0275|consen  474 -----------------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK  507 (508)
T ss_pred             -----------------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence                                         455677778888888888888 9999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.4e-29  Score=225.33  Aligned_cols=247  Identities=15%  Similarity=0.146  Sum_probs=188.0

Q ss_pred             eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC--ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC
Q 007234          112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (612)
Q Consensus       112 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~  187 (612)
                      +..+|...|.+++|+|.|++|++||.|.++.+|.-..+  +++.++.+|+..|.|++|+++|++||+++  .+|.||.+.
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            33679999999999999999999999999999975543  78889999999999999999999999999  799999987


Q ss_pred             CC---eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234          188 DH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (612)
Q Consensus       188 ~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (612)
                      .+   .+...+.+|...|..+.|+|....|++++ .|.+|++|+-..+.  ...++.++..+...+-++.|.     +.|
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G  207 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIG  207 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCC
Confidence            54   56788899999999999999999999997 79999999877422  244778888777666677787     899


Q ss_pred             cEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEE
Q 007234          265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK  344 (612)
Q Consensus       265 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~  344 (612)
                      ..|++++.|++++||-..+.-.. .+....-.+.    +.   .   ..|++++.|+.++++.... -..+.......+.
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~~~~~-~~sr~~Y~v~----W~---~---~~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~  275 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYTDLSG-MHSRALYDVP----WD---N---GVIASGGGDDAIRLFKESD-SPDEPSWNLLAKK  275 (312)
T ss_pred             ceEEEecCCcceEeeeeccCcch-hcccceEeee----ec---c---cceEeccCCCEEEEEEecC-CCCCchHHHHHhh
Confidence            99999999999999985432111 1111111111    11   1   2788888877666544220 0011111222223


Q ss_pred             eeccCCCeEEEEecCC-CceEeccccceeeecceee
Q 007234          345 ILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       345 ~~~h~~~v~~l~~S~d-g~~l~~s~s~d~~~~~w~~  379 (612)
                      -..|...|.++.|.|. ...| +|||+||.+++|++
T Consensus       276 ~~aHe~dVNsV~w~p~~~~~L-~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  276 EGAHEVDVNSVQWNPKVSNRL-ASGGDDGIVNFWEL  310 (312)
T ss_pred             hcccccccceEEEcCCCCCce-eecCCCceEEEEEe
Confidence            3458889999999996 4456 99999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=3.9e-31  Score=245.70  Aligned_cols=277  Identities=16%  Similarity=0.225  Sum_probs=224.8

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +..|.  |+.|  |.+.+++|..|++|+|||..+-.+...+.+|.+.+.|+.|.                          
T Consensus       197 skgVY--ClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------------------------  246 (499)
T KOG0281|consen  197 SKGVY--CLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------------------------  246 (499)
T ss_pred             CCceE--EEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--------------------------
Confidence            44553  3365  56679999999999999999999999999998877765554                          


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc---eeEEEecCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST  159 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~  159 (612)
                         ...+++|+.|.+|+|||+++|+++..+. +|...|..+.|+  +.+++++|.|.++.+||+.+..   +.+.+.+|.
T Consensus       247 ---~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             ---ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence               5689999999999999999999997775 699999999997  4589999999999999998764   344577899


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ..|+.+.|+  .+++++++  .+|++|++.+++.++++.||...|.|+.+.  |+++++++ .|.+|++||+..|...  
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~cL--  393 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACL--  393 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccHHH--
Confidence            999999996  56999888  699999999999999999999999888764  77888877 6999999999999744  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                         ..++++...+.++-|.       .+.+++|..||+|++||+.++..-+..               .+.         
T Consensus       394 ---RvLeGHEeLvRciRFd-------~krIVSGaYDGkikvWdl~aaldpra~---------------~~~---------  439 (499)
T KOG0281|consen  394 ---RVLEGHEELVRCIRFD-------NKRIVSGAYDGKIKVWDLQAALDPRAP---------------AST---------  439 (499)
T ss_pred             ---HHHhchHHhhhheeec-------CceeeeccccceEEEEecccccCCccc---------------ccc---------
Confidence               5677888888888884       478999999999999999877542210               000         


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                            .+..++..|++.|..+.|.  ...+ +++++|.+|.+|++.+
T Consensus       440 ----------------------~Cl~~lv~hsgRVFrLQFD--~fqI-vsssHddtILiWdFl~  478 (499)
T KOG0281|consen  440 ----------------------LCLRTLVEHSGRVFRLQFD--EFQI-ISSSHDDTILIWDFLN  478 (499)
T ss_pred             ----------------------hHHHhhhhccceeEEEeec--ceEE-EeccCCCeEEEEEcCC
Confidence                                  0011344577788888774  3455 9999999999999855

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.1e-27  Score=234.32  Aligned_cols=323  Identities=14%  Similarity=0.127  Sum_probs=245.8

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee---ccCCccccccccccccccccccceeEEEeeecccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +.=|+++  .|||||++||+++.||++.+||-.+|+.+.++.   .|.+.+..+.|+|+                     
T Consensus       190 skFV~~V--RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD---------------------  246 (603)
T KOG0318|consen  190 SKFVNCV--RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD---------------------  246 (603)
T ss_pred             ccceeeE--EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC---------------------
Confidence            3446555  999999999999999999999999999999997   66666666666655                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCC--CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~--~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                            +..+++++.|.+++|||+.++.++.++.-+.+  ..-.++-|-  +..|++.+.+|+|.+++...+..+..+.+
T Consensus       247 ------s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G  318 (603)
T KOG0318|consen  247 ------STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG  318 (603)
T ss_pred             ------CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc
Confidence                  78899999999999999999999888765443  444555564  56899999999999999999999999999


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE-----------E--------------------E---------
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-----------K--------------------F---------  195 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~-----------~--------------------~---------  195 (612)
                      |...|+++..+||+++|++|+  |.|.-||..++..-+           .                    +         
T Consensus       319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~  398 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK  398 (603)
T ss_pred             cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence            999999999999999999999  999999986542110           0                    0         


Q ss_pred             ---------------------------------ecC--------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          196 ---------------------------------SGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       196 ---------------------------------~~h--------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                                                       +.+        .-...+++++|+++.++.++ .|+.|++|.+.....
T Consensus       399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l  477 (603)
T KOG0318|consen  399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDEL  477 (603)
T ss_pred             cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcc
Confidence                                             000        01235678899999999988 799999999988764


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC-CceeEeecccccCCCCcccchh
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK-ATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      ..   ......+...++.+.++     ||+.+|+++...+.+.+||..+.+.....- -+...+.+.. ++|+.+    .
T Consensus       478 ~e---e~~~~~h~a~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~----~  544 (603)
T KOG0318|consen  478 KE---EAKLLEHRAAITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNK----L  544 (603)
T ss_pred             cc---eeeeecccCCceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCce----E
Confidence            31   22223344556778888     999999999999999999999887632211 1233334443 899988    9


Q ss_pred             hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +++|+.|.++.+|+..      ..... ..-...|...|..+.|-.+.. + +|.+.|..+|+|++
T Consensus       545 vATGSlDt~Viiysv~------kP~~~-i~iknAH~~gVn~v~wlde~t-v-vSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  545 VATGSLDTNVIIYSVK------KPAKH-IIIKNAHLGGVNSVAWLDEST-V-VSSGQDANIKVWNV  601 (603)
T ss_pred             EEeccccceEEEEEcc------Chhhh-eEeccccccCceeEEEecCce-E-EeccCcceeEEecc
Confidence            9999998766554411      11111 222235887899999965554 5 78888999999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-28  Score=239.02  Aligned_cols=423  Identities=15%  Similarity=0.178  Sum_probs=284.0

Q ss_pred             cccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            4 SNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         4 ~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .+|.+|  +|||... -+|+.+ .-++.||+..+.....++......+.+..|..+                        
T Consensus        27 ~~vssl--~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D------------------------   79 (487)
T KOG0310|consen   27 NSVSSL--CFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD------------------------   79 (487)
T ss_pred             CcceeE--ecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecC------------------------
Confidence            467667  9999553 355554 347999999988888777666666666666655                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                         |.++++|...|.|+|||..+...+.. +.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+......+.+|++.
T Consensus        80 ---G~LlaaGD~sG~V~vfD~k~r~iLR~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   80 ---GRLLAAGDESGHVKVFDMKSRVILRQ-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             ---CeEEEccCCcCcEEEeccccHHHHHH-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence               99999999999999999776555544 47899999999999955 55888999999999999988876689999999


Q ss_pred             eeEEEECCCCC-EEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          162 ISCMAVSSDGK-MLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       162 v~~l~~spdg~-~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      |.|.+|+|-.. ++++|+  |.|++||.++. ..+.++. |..||..+.|-|.|..++++|  ...|+|||+.++...  
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql--  230 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL--  230 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee--
Confidence            99999999655 667777  99999999987 6677775 999999999999999999886  568999999977644  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                        +.....+...++|+.+.     .++..|++++.||.+++||..+.+.+....                          
T Consensus       231 --l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--------------------------  277 (487)
T KOG0310|consen  231 --LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--------------------------  277 (487)
T ss_pred             --hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEeee--------------------------
Confidence              22333344556777776     688999999999999999976665542110                          


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecceeecccCCccccccC
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLP  397 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~  397 (612)
                                                    -.+.|.++++|||++.+ +.|..++.+.......  + -++       .+
T Consensus       278 ------------------------------~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~~--k-~k~-------s~  316 (487)
T KOG0310|consen  278 ------------------------------YPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRREV--K-KKP-------SK  316 (487)
T ss_pred             ------------------------------cccceeeEEecCCCceE-EEecccceeeeehhhc--c-cCC-------Cc
Confidence                                          12378999999999999 8887787775553210  0 000       00


Q ss_pred             CCcccchhhhhhcccCCCCCccccccccccchhhhhhhhccCcccccccCCccCCHHHHHHhcCCCCCCCCCCCCchhhh
Q 007234          398 LPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEA  477 (612)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~  477 (612)
                      .++.       ++..   ......     ....+....+.+|-.........-..++.+|+.....+         .+-.
T Consensus       317 ~~~~-------r~~r---~~~~~v-----~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kk---------ALd~  372 (487)
T KOG0310|consen  317 EPKR-------RADR---SDGFFV-----KVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKK---------ALDH  372 (487)
T ss_pred             cccc-------cccc---cccceE-----eeeccccccccceeEeccccccCCchHHHHHhhhhHHH---------HHHH
Confidence            0000       0000   000000     00000000000000000000000111222222221100         0000


Q ss_pred             hhh-ccc-----cccccC-ChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcChHH
Q 007234          478 TLF-NGI-----DFETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTP  550 (612)
Q Consensus       478 ~L~-~~l-----~~~~~~-~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~l~s~~~l~~  550 (612)
                      +|- +.-     .+++-+ ....+..++....-..+.+||.||.+.+.. +.-+..++.|+..+|-..+.-|...|.+..
T Consensus       373 vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l~~-~rf~~~L~~~~~~iLd~Y~~~i~~s~~l~k  451 (487)
T KOG0310|consen  373 VLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNLTV-VRFASILMEVVSVILDLYARDIEGSPMLAK  451 (487)
T ss_pred             HhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHhhhccCHHHHH
Confidence            110 000     111111 234677777788888889999999977744 445889999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 007234          551 MLSSLYKVFRS  561 (612)
Q Consensus       551 ~L~~l~~~l~~  561 (612)
                      .+..|+..+++
T Consensus       452 ~i~~L~~~V~~  462 (487)
T KOG0310|consen  452 LIQALRGKVEQ  462 (487)
T ss_pred             HHHHHHHHHHH
Confidence            99999887764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=9.2e-29  Score=238.87  Aligned_cols=248  Identities=13%  Similarity=0.281  Sum_probs=215.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ...|++|  +|+.+|.+||+|+.||.++||+. +|..+.++..|.+++.++-|+..                        
T Consensus       235 nkdVT~L--~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~------------------------  287 (524)
T KOG0273|consen  235 NKDVTSL--DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK------------------------  287 (524)
T ss_pred             cCCcceE--EecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC------------------------
Confidence            3578666  99999999999999999999997 57788888888877776666655                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                         +++|++++.||++.+||..+|...+.+ .-|..+-.++.|-.+ ..|++++.|+.|+++-+....++.++.+|.++|
T Consensus       288 ---G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V  362 (524)
T KOG0273|consen  288 ---GTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV  362 (524)
T ss_pred             ---CCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence               899999999999999999999998777 458887778888754 469999999999999999999999999999999


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC---------cEEEEEEcCCCeEEEEEcCC
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .++.|+|.|.+|++++  ++++||+.........+.+|...|..+.|+|+|         ..+++++ .|++|++||+..
T Consensus       363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~  441 (524)
T KOG0273|consen  363 NALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVES  441 (524)
T ss_pred             EEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccC
Confidence            9999999999999998  999999999998999999999999999999964         3577777 699999999999


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      +.+     +..+..+...+..+.|+     |+|+++++|+.||.|++|+.++++..+.....
T Consensus       442 gv~-----i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  442 GVP-----IHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             Cce-----eEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence            874     45564444555667787     99999999999999999999999988766544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=7.8e-30  Score=247.26  Aligned_cols=285  Identities=11%  Similarity=0.127  Sum_probs=233.1

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |+..|.++  .|.| .+.+|++++.|+.|+|||+.. ++++++|.+|..+|..+.|+..                     
T Consensus       213 H~kgvsai--~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~---------------------  269 (503)
T KOG0282|consen  213 HTKGVSAI--QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC---------------------  269 (503)
T ss_pred             Cccccchh--hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc---------------------
Confidence            35567666  9999 899999999999999999987 8999999999999999999988                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                            +..+++++-|+.|++||+++|+++.++.  ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|
T Consensus       270 ------g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h  341 (503)
T KOG0282|consen  270 ------GTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH  341 (503)
T ss_pred             ------CCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence                  8899999999999999999999998874  34578999999988 78999999999999999999999999999


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      -+.|..+.|-++|+.+++++  +++++|+.+.+-.++... .+.....++..+|++++++.-+ .|+.|.++.+...-..
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~  420 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRL  420 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEeccccccc
Confidence            99999999999999999988  899999999886655432 2334466889999999999887 6999999997654333


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                      .....+....-......+.|+     |||.+|++|+.||.+.+||.++-+.+.                           
T Consensus       421 nkkK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~---------------------------  468 (503)
T KOG0282|consen  421 NKKKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS---------------------------  468 (503)
T ss_pred             CHhhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh---------------------------
Confidence            222223222222233445566     999999999999999999987776543                           


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                  ++..|.+.++.+.|.|-..--++|++.||.|++|+
T Consensus       469 ----------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 ----------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ----------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                                        33455556777778876655448999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-29  Score=234.72  Aligned_cols=238  Identities=20%  Similarity=0.333  Sum_probs=211.4

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ...|.++  +|+..|+++|+++.|=.+++||.++ .+++....+|...+.+..|-+.                       
T Consensus       150 t~sv~di--~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~-----------------------  204 (406)
T KOG0295|consen  150 TDSVFDI--SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL-----------------------  204 (406)
T ss_pred             ccceeEE--EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec-----------------------
Confidence            3457556  9999999999999998899999986 4567767666666655555554                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.+|++++.|.+|+.|++.+|.++.++ .+|..-|.-+..+.||..+++|+.|.+|++|-+.++++...++.|+.+
T Consensus       205 ----gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  205 ----GDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP  279 (406)
T ss_pred             ----CCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence                789999999999999999999999887 689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCC---------------CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          162 ISCMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       162 v~~l~~spd---------------g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                      |.|++|.|.               +.++++++  ++|++||+.++.++.++.||.+.|..++|+|.|+||++++ +|+++
T Consensus       280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktl  358 (406)
T KOG0295|consen  280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTL  358 (406)
T ss_pred             eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcE
Confidence            999999863               25888888  8999999999999999999999999999999999999998 79999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ++||+.+..     |......+..++.+..|.     .+.-++++|+.|-.+++|..
T Consensus       359 rvwdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  359 RVWDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence            999999987     556777788888889997     67779999999999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=3.7e-27  Score=242.16  Aligned_cols=310  Identities=15%  Similarity=0.195  Sum_probs=242.7

Q ss_pred             EcCCC--CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           13 FSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        13 fspdg--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++|+.  +.++.|+.+|.+++||+++++.+.+|+++...++++.-++.                           -+.++
T Consensus       166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVVa  218 (910)
T KOG1539|consen  166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVVA  218 (910)
T ss_pred             ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEEE
Confidence            67765  56889999999999999999999999988877776666665                           67899


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCC-CCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEe------------
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR------------  156 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~------------  156 (612)
                      +|..+|+|.++|++.++.+..+.  | .++|++++|..||.. +++|+..|.+.+||++..+.+..++            
T Consensus       219 iG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f  296 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF  296 (910)
T ss_pred             EeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence            99999999999999999998884  5 499999999999876 6666777999999987532211111            


Q ss_pred             --------------------------------------------------------------------------------
Q 007234          157 --------------------------------------------------------------------------------  156 (612)
Q Consensus       157 --------------------------------------------------------------------------------  156 (612)
                                                                                                      
T Consensus       297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------cCC------CCeeEEEE
Q 007234          157 ---------------------------------------------------------------AST------KGISCMAV  167 (612)
Q Consensus       157 ---------------------------------------------------------------~~~------~~v~~l~~  167 (612)
                                                                                     .+.      ..+++++.
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v  456 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV  456 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence                                                                           001      24567778


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      ++-|++.+.|.  |.|-+|++++|-...++   +.|.++|++++...-++.+++++ .+|.+++||..+....   ....
T Consensus       457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l~  532 (910)
T KOG1539|consen  457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSLR  532 (910)
T ss_pred             eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eeec
Confidence            88888888887  89999999999888888   58999999999998889999998 6999999999887633   2222


Q ss_pred             ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccce
Q 007234          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~  322 (612)
                      +.+....  .+ ..     .....++.+..|=.|.++|..+.+.++.+.++...+.... |||+++    ++++++.|+.
T Consensus       533 l~~~~~~--iv-~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~t  599 (910)
T KOG1539|consen  533 LGSSITG--IV-YH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDST  599 (910)
T ss_pred             cCCCcce--ee-ee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCCc
Confidence            3222222  22 22     4557788889999999999999999998888877777655 999999    9999999999


Q ss_pred             ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccce-eeeccee
Q 007234          323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRY  378 (612)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d-~~~~~w~  378 (612)
                      +++||    ++.|..    ...+. -....+++.|||+|.+| ++...| .-+.+|.
T Consensus       600 Ir~wD----lpt~~l----ID~~~-vd~~~~sls~SPngD~L-AT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  600 IRTWD----LPTGTL----IDGLL-VDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEEe----ccCcce----eeeEe-cCCcceeeEECCCCCEE-EEEEecCceEEEEE
Confidence            99998    222221    21222 23478999999999999 777666 8889994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=6.1e-30  Score=242.80  Aligned_cols=240  Identities=15%  Similarity=0.183  Sum_probs=202.9

Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-cCCccccccccccccccccccceeEEEeeecccc
Q 007234            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +|.++|+.+  .||++|.++++|+.+|.|++|+..-.. ++.++. |...|.+++|++.                     
T Consensus       136 aHDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpn---------------------  191 (464)
T KOG0284|consen  136 AHDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPN---------------------  191 (464)
T ss_pred             hhcccceeE--EEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCC---------------------
Confidence            367899877  999999999999999999999986443 334443 3366666666665                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                            +..+++++.||.|+|||....+....+ .+|.-.|.++.|+|....++++|.|..|++||.++|.++.++.+|+
T Consensus       192 ------DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK  264 (464)
T KOG0284|consen  192 ------DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK  264 (464)
T ss_pred             ------CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence                  677999999999999999988776555 7899999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ..|..+.|+|++++|++++  ..++++|+++.+.+..+++|...|+++.|+|-..-|++++..||.|..|.+...+..  
T Consensus       265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~--  342 (464)
T KOG0284|consen  265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL--  342 (464)
T ss_pred             ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc--
Confidence            9999999999999999999  799999999999999999999999999999976555554458999999999855433  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                       ..... .+...+-.+.+.     |=|..|++|+.|.++++|.
T Consensus       343 -~~i~~-AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  343 -GEIPP-AHDGEIWSLAYH-----PLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             -cCCCc-ccccceeeeecc-----ccceeEeecCCCcceeeec
Confidence             12222 344444556665     9999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.7e-28  Score=247.52  Aligned_cols=322  Identities=17%  Similarity=0.165  Sum_probs=235.8

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +|.++  +-+||.-+||.|..||.|+||+..++....+|.+|...|+.+-|...                          
T Consensus        67 evt~l--~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~--------------------------  118 (888)
T KOG0306|consen   67 EVTCL--RSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI--------------------------  118 (888)
T ss_pred             eEEEe--eccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence            56433  77789999999999999999999999999999999887777777766                          


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                       |..+++|+.|+.|.+||+-......++ .+|...|+..-|..+.++++++|.|+.|++||+.+..+..+.-.|.+.++.
T Consensus       119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~  196 (888)
T KOG0306|consen  119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA  196 (888)
T ss_pred             -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence             899999999999999999888777777 689999999999988889999999999999999999988888888888888


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCC-----------------------------------Ce-----------------
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSD-----------------------------------HK-----------------  190 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~-----------------------------------~~-----------------  190 (612)
                      +++++  +.++++.  +.+++|++..                                   .+                 
T Consensus       197 l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~  274 (888)
T KOG0306|consen  197 LVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR  274 (888)
T ss_pred             EEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence            88876  3444443  6777776600                                   00                 


Q ss_pred             ------------------------------------------------------------e-------------------
Q 007234          191 ------------------------------------------------------------K-------------------  191 (612)
Q Consensus       191 ------------------------------------------------------------~-------------------  191 (612)
                                                                                  .                   
T Consensus       275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s  354 (888)
T KOG0306|consen  275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS  354 (888)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence                                                                        0                   


Q ss_pred             -----------EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc-ee--------------------
Q 007234          192 -----------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA-SC--------------------  239 (612)
Q Consensus       192 -----------~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~-~~--------------------  239 (612)
                                 -.++.||...|.++++|.+...+++++  .+.+++|+..+.+.... .+                    
T Consensus       355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga--~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k  432 (888)
T KOG0306|consen  355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA--GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTK  432 (888)
T ss_pred             CCCCccccccceeeeccchhheeEEEeecCceeeeecC--CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEecc
Confidence                       002458888888888888877777664  56788888776553310 00                    


Q ss_pred             --------------eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce--------ecccCCce---
Q 007234          240 --------------VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE--------LRNTKATK---  294 (612)
Q Consensus       240 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~--------~~~~~~~~---  294 (612)
                                    +.....|...+-.+..+     ||+..+++||.|.+|++||..-...        +.-.+...   
T Consensus       433 ~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~-----pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel  507 (888)
T KOG0306|consen  433 NGELQVFDLASASLVETIRAHDGAIWSISLS-----PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL  507 (888)
T ss_pred             CCceEEEEeehhhhhhhhhccccceeeeeec-----CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence                          01111222333334443     9999999999999999999532221        11111111   


Q ss_pred             -eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234          295 -ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (612)
Q Consensus       295 -~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~  373 (612)
                       ..+-|. .+||+++    .++.+-.|.++.++-     .+   ....+-++.+|.=+|.|+..|||++++ +|||.|++
T Consensus       508 ~ddvL~v-~~Spdgk----~LaVsLLdnTVkVyf-----lD---tlKFflsLYGHkLPV~smDIS~DSkli-vTgSADKn  573 (888)
T KOG0306|consen  508 EDDVLCV-SVSPDGK----LLAVSLLDNTVKVYF-----LD---TLKFFLSLYGHKLPVLSMDISPDSKLI-VTGSADKN  573 (888)
T ss_pred             cccEEEE-EEcCCCc----EEEEEeccCeEEEEE-----ec---ceeeeeeecccccceeEEeccCCcCeE-EeccCCCc
Confidence             122222 2789998    888888876554321     11   223455788999999999999999999 99999999


Q ss_pred             ecceee
Q 007234          374 KRGRYV  379 (612)
Q Consensus       374 ~~~w~~  379 (612)
                      +++|-+
T Consensus       574 VKiWGL  579 (888)
T KOG0306|consen  574 VKIWGL  579 (888)
T ss_pred             eEEecc
Confidence            999965

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3.7e-28  Score=246.56  Aligned_cols=272  Identities=17%  Similarity=0.219  Sum_probs=223.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      -+.|+.++||.+++.+.+|+|+..+..+. .+.+|...+.++..                 |.+          +.++++
T Consensus       331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~-----------------~~~----------g~llat  382 (775)
T KOG0319|consen  331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDV-----------------WSS----------GDLLAT  382 (775)
T ss_pred             ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeee-----------------ccc----------CcEEEE
Confidence            35678899999999999999999888776 66777665553332                 221          679999


Q ss_pred             EECCCcEEEEEcCCCeEEE---EeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCce-----e----EEEecC
Q 007234           92 GTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL-----L----GKFRAS  158 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~---~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~-----~----~~~~~~  158 (612)
                      |+.|.++++|.++.+....   ....+|++.|.+++++..+ .+|+++|.|+++++|++...+.     +    .+...|
T Consensus       383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH  462 (775)
T ss_pred             ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence            9999999999885544321   2226899999999997754 4699999999999999876221     1    123468


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      ...|+|++++|+.+++|+|+  .+.++|++........+.||...|.++.|+|..+.+++++ .|++|+||.+.+..   
T Consensus       463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fS---  538 (775)
T KOG0319|consen  463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFS---  538 (775)
T ss_pred             cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccce---
Confidence            88999999999999999999  8999999999999999999999999999999999999987 79999999999986   


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                        |+.++.++...+--+.|-     .+|+.|++++.||.|++|++++.+.+.                            
T Consensus       539 --ClkT~eGH~~aVlra~F~-----~~~~qliS~~adGliKlWnikt~eC~~----------------------------  583 (775)
T KOG0319|consen  539 --CLKTFEGHTSAVLRASFI-----RNGKQLISAGADGLIKLWNIKTNECEM----------------------------  583 (775)
T ss_pred             --eeeeecCccceeEeeeee-----eCCcEEEeccCCCcEEEEeccchhhhh----------------------------
Confidence              667787444444444454     788999999999999999998876643                            


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                 ++..|.+.||.++.++++..+ +||+.|+.+-+|.
T Consensus       584 ---------------------------tlD~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  584 ---------------------------TLDAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK  617 (775)
T ss_pred             ---------------------------hhhhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence                                       445788899999999999988 9999999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=5.1e-29  Score=222.08  Aligned_cols=279  Identities=14%  Similarity=0.151  Sum_probs=234.0

Q ss_pred             CCcccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            2 GSSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         2 ~s~~V~~l~~~fsp---dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ++.||-.|  +|||   +|-+|++++.||.-.+=+-++|.-+-+|.+|.+.|.+.....+                    
T Consensus        13 htrpvvdl--~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n--------------------   70 (334)
T KOG0278|consen   13 HTRPVVDL--AFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN--------------------   70 (334)
T ss_pred             CCcceeEE--eccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch--------------------
Confidence            46788444  9987   8889999999999999899999999999999998877666655                    


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEEec
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA  157 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~  157 (612)
                             ....++++.|-+-+|||..+|..+..+.  |.--|.+++|+.|.++|++|+.+..+++||++..+ +...+.+
T Consensus        71 -------a~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   71 -------ATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             -------hhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence                   4456788889999999999999988873  77889999999999999999999999999998764 5677899


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      |.+.|..+.|....+.++++.  ++|++||.++++.++++. ...+|+++.++++|.++.++  ..+.|..||..+-...
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL  218 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce
Confidence            999999999988777777755  999999999999999987 57789999999999977664  4778999999887644


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                           ....-+.. +......     |+...+++|++|+.++.||..+++.+..                          
T Consensus       219 -----Ks~k~P~n-V~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------  261 (334)
T KOG0278|consen  219 -----KSYKMPCN-VESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------  261 (334)
T ss_pred             -----eeccCccc-ccccccc-----CCCceEEecCcceEEEEEeccCCceeee--------------------------
Confidence                 22222322 3444555     8999999999999999999999987531                          


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                  -..+|.+.|.|+.|||||..- ++||.|+++|+|...
T Consensus       262 ----------------------------~nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  262 ----------------------------YNKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT  297 (334)
T ss_pred             ----------------------------cccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence                                        024788899999999999999 999999999999763

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.9e-27  Score=215.63  Aligned_cols=249  Identities=16%  Similarity=0.205  Sum_probs=202.7

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..|.++  .|+++|+++++++.|.++++||..+|+.++++..+..++....|.+.                         
T Consensus        15 ~~i~sl--~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~-------------------------   67 (311)
T KOG1446|consen   15 GKINSL--DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH-------------------------   67 (311)
T ss_pred             CceeEE--EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC-------------------------
Confidence            467555  99999999999999999999999999999999877666666666655                         


Q ss_pred             cCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           84 LGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        84 ~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                        ...++.++.  |.+|+..++.+++.++.+ .||...|++++.+|-+..+++++.|++|++||++..++...+..... 
T Consensus        68 --~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-  143 (311)
T KOG1446|consen   68 --SNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-  143 (311)
T ss_pred             --CceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-
Confidence              455666666  677999999999999555 89999999999999889999999999999999998888877765444 


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCC--eeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~--~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                       ..++|+|+|-++|++.  +.|++||++.-  .+..++.   +.....+.+.|||||++++.+. ..+.+.+.|.-.|..
T Consensus       144 -pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  144 -PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTV  221 (311)
T ss_pred             -cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcE
Confidence             4578999999999998  48999999864  3445553   3466789999999999999887 688999999999875


Q ss_pred             ccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          235 QSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       235 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      .   ..+... ......-.++|.     ||++++++|+.||+|++|+++++..+....+.
T Consensus       222 ~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  222 K---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             e---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            4   233332 222233456676     99999999999999999999999888666553

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3e-28  Score=250.79  Aligned_cols=252  Identities=16%  Similarity=0.220  Sum_probs=222.1

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ++.|+.+  +|+|...++.++-..|.|++||.+=+.++..|..|.++|..+.|.+.                        
T Consensus         9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------   62 (1202)
T KOG0292|consen    9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------   62 (1202)
T ss_pred             cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence            5677778  99999999999999999999999999999999999999999999988                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                         +.++++|+.|..|+||+..+.+++.++ .+|-..|..+.|++.-.++++||.|.+|++|+..+++++..+.+|..-|
T Consensus        63 ---qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV  138 (1202)
T KOG0292|consen   63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV  138 (1202)
T ss_pred             ---CCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence               889999999999999999999999888 5899999999999999999999999999999999999999999999999


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCC----------------------------e-eEEEEecCCCCEEEEEEeeCC
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDH----------------------------K-KMQKFSGHPGAVRFMTFSDNG  211 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~----------------------------~-~~~~~~~h~~~v~~l~~sp~~  211 (612)
                      .|..|+|...++++++  .+|++||+..-                            . ....+.||...|+-++|+|.-
T Consensus       139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            9999999999999999  89999998421                            0 123457999999999999999


Q ss_pred             cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      ..+++++ +|+.|++|.+...+.-   .+-+...+-..++++-|.     |...++++.++|+.|++||+...+.++++.
T Consensus       219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence            9999987 7999999999876522   233344555556667776     888999999999999999998888777664


Q ss_pred             Cc
Q 007234          292 AT  293 (612)
Q Consensus       292 ~~  293 (612)
                      ..
T Consensus       290 re  291 (1202)
T KOG0292|consen  290 RE  291 (1202)
T ss_pred             cc
Confidence            43

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.8e-27  Score=250.80  Aligned_cols=238  Identities=24%  Similarity=0.389  Sum_probs=204.3

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ...|+.+  +|+|||+++++++.|++|+|||+ ..+..++++.+|...+.++.|++.                       
T Consensus       203 ~~~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~-----------------------  257 (456)
T KOG0266|consen  203 TRGVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD-----------------------  257 (456)
T ss_pred             ccceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC-----------------------
Confidence            4567666  99999999999999999999999 666899999999998888888887                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~  159 (612)
                          ++++++|+.|++|+|||+.++++...+ .+|.+.|++++|+++++.|++++.|+.|++||+.++.  +...+..+.
T Consensus       258 ----g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  332 (456)
T KOG0266|consen  258 ----GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE  332 (456)
T ss_pred             ----CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC
Confidence                889999999999999999999999777 6899999999999999999999999999999999998  567777665


Q ss_pred             CC--eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEE---EEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          160 KG--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR---FMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       160 ~~--v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~---~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ..  +++++|+|++++++++.  +.+++||+..+..+..+.+|...+.   +..+++.++++++++ .|+.|.+|++.++
T Consensus       333 ~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  333 NSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSG  411 (456)
T ss_pred             CCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCcc
Confidence            55  99999999999999998  6999999999999999999988643   334567899999987 8999999999986


Q ss_pred             ccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEEC
Q 007234          233 KKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYG  281 (612)
Q Consensus       233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~  281 (612)
                      ...     ..+..+ ...+....+.     +...++++++  .|+.+++|..
T Consensus       412 ~~~-----~~l~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  412 GIL-----QRLEGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             chh-----hhhcCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecC
Confidence            543     233333 4444555555     8889999998  6889999964

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=8.1e-28  Score=224.66  Aligned_cols=226  Identities=17%  Similarity=0.246  Sum_probs=199.1

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +..+++|+.|++|+|||+.+|+...++ .+|...|.++++|+...++++|+.|+.|++||+...+.++.+.+|-..|.|+
T Consensus       163 n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L  241 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL  241 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence            789999999999999999999998777 6899999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (612)
                      +.+|.-..|++|+  .++++||+++...+..+.||..+|.++.+.|....+++++ .|++|++||+..++..     .++
T Consensus       242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt~-----~tl  315 (460)
T KOG0285|consen  242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKTM-----ITL  315 (460)
T ss_pred             eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCcee-----Eee
Confidence            9999999999998  7999999999999999999999999999999888899987 7999999999998743     566


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~  323 (612)
                      .|+...+.+++..     |....+++++.| .|+-|++..|+.+.                                   
T Consensus       316 t~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~-----------------------------------  354 (460)
T KOG0285|consen  316 THHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQ-----------------------------------  354 (460)
T ss_pred             ecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhh-----------------------------------
Confidence            6788888888886     888888888877 68889877665432                                   


Q ss_pred             cCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                          .+.+|..-+.+++...||-+  ++|++.+++.+|+..+
T Consensus       355 --------------------nlsgh~~iintl~~nsD~v~--~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  355 --------------------NLSGHNAIINTLSVNSDGVL--VSGGDNGSIMFWDWKS  390 (460)
T ss_pred             --------------------ccccccceeeeeeeccCceE--EEcCCceEEEEEecCc
Confidence                                23355556777888888865  6899999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=246.62  Aligned_cols=259  Identities=15%  Similarity=0.190  Sum_probs=188.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeecc---------------------------------CC
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADI---------------------------------AS   48 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~---------------------------------~~   48 (612)
                      +.+.|  +|+.||+||+|||+||.||.|+||.+...+....-.+.                                 ..
T Consensus       266 h~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  266 HKGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cCCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            56788  66799999999999999999999998652110000000                                 00


Q ss_pred             cccc-------cccccc---ccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC
Q 007234           49 TETT-------SLYGNR---LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG  118 (612)
Q Consensus        49 ~~~~-------~~~s~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~  118 (612)
                      ...+       ..|...   ...||. .++-.+.|.-          +.+|++++.|.+|++|++.+.+|+..+  .|..
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hnd  410 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHND  410 (712)
T ss_pred             CCccccCCCccccccccchhhhhccc-hhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCC
Confidence            0000       001100   012232 2344455643          679999999999999999999999887  4999


Q ss_pred             CeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE
Q 007234          119 GVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF  195 (612)
Q Consensus       119 ~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~  195 (612)
                      -|+|++|+| |.++|++|+.||.|++|++...+.+.- ..-..-|++++|.|||+..++|+  |.+++|+....+....+
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            999999999 888999999999999999976655444 44457899999999999999999  99999999888776544


Q ss_pred             ec--C------CCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcE
Q 007234          196 SG--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY  266 (612)
Q Consensus       196 ~~--h------~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (612)
                      .-  |      ...|+++.|.|... .+++++ .|..|+|+|.+..+..   +.+...+.......+.|+     .||++
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~  560 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKH  560 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCE
Confidence            21  1      12799999997544 244444 6999999999776644   334333333344456676     89999


Q ss_pred             EEEEecCCcEEEEECCCcc
Q 007234          267 VLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       267 l~t~s~dg~i~iwd~~~~~  285 (612)
                      |+++++|..|++|+.+...
T Consensus       561 IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  561 IVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             EEEeecCceEEEEeCCCCc
Confidence            9999999999999975543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=5.9e-27  Score=211.07  Aligned_cols=273  Identities=13%  Similarity=0.115  Sum_probs=219.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +.+|++++.|....||-...|+.+.++ .+|++.|+|+..+.+.+.+++|+.|.++++||+.+|+++.+++. ..+|..+
T Consensus        22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~   99 (327)
T KOG0643|consen   22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRV   99 (327)
T ss_pred             CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEE
Confidence            999999999999999999999999888 68999999999999999999999999999999999999999984 6789999


Q ss_pred             EECCCCCEEEEeC-------CeEEEEEcC-------CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       166 ~~spdg~~l~~~~-------g~i~lwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .|+++|++++...       +.|.++|++       ..+++..+..+.+.++.+.|.|-+++++++. .||.|.+||+++
T Consensus       100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~  178 (327)
T KOG0643|consen  100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART  178 (327)
T ss_pred             eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence            9999999888765       589999998       4566888888999999999999999999986 799999999999


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  311 (612)
                      +...    +.....+...++-+.++     +|..+++++|.|.+-++||..+.+.+++.....+.-+..  ++|-...  
T Consensus       179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa--isP~~d~--  245 (327)
T KOG0643|consen  179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA--ISPLLDH--  245 (327)
T ss_pred             Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeeccccccee--cccccce--
Confidence            8643    33334444466677777     999999999999999999999999988766554433221  3443331  


Q ss_pred             hhhhcccccceecCCCceEEEE-eC--------CccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          312 AAIFAAKLQDIVKPASVHTFVA-YG--------LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       312 ~~i~~~~~d~~~~~~~~~~~~~-~g--------~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                       .|+.|+.+.....    .... .|        ......+..+.+|.+++.+++|+|||+.. .||+.|+.+|+.-+.
T Consensus       246 -VilgGGqeA~dVT----TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  246 -VILGGGQEAMDVT----TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHFD  317 (327)
T ss_pred             -EEecCCceeeeee----eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEec
Confidence             4444444321111    0000 01        01125566888999999999999999999 999999999998663

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.4e-27  Score=218.99  Aligned_cols=303  Identities=17%  Similarity=0.170  Sum_probs=212.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.+++|.-  +|||||.++|+|+.|..|+|.|++..-...  .                                     
T Consensus       111 HK~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks--~-------------------------------------  149 (430)
T KOG0640|consen  111 HKSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKS--K-------------------------------------  149 (430)
T ss_pred             cccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhc--c-------------------------------------
Confidence            45677655  999999999999999999999986211000  0                                     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec--C
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--S  158 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~  158 (612)
                          ...+..|.         .+.+ -.++++ ..|...|+++.|+|....|++++.|++|++||+......+-++.  .
T Consensus       150 ----~~em~~~~---------~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd  215 (430)
T KOG0640|consen  150 ----PKEMISGD---------TQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD  215 (430)
T ss_pred             ----hhhhccCC---------cccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence                00000000         0111 223344 56999999999999999999999999999999875433332222  3


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..+|.++.|+|.|.+|++|.  ..+++||+.+.++...-   .+|.+.|+++.+++.|+..++++ .||.|++||--.++
T Consensus       216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~r  294 (430)
T KOG0640|consen  216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNR  294 (430)
T ss_pred             cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHH
Confidence            45899999999999999998  69999999999886543   47899999999999999888887 89999999977776


Q ss_pred             cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce----eEeecccccCCCCcc
Q 007234          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK----ILSSSEDVNSKSQKS  309 (612)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~  309 (612)
                      +.   ..+...|....++...|.     .+|+++++.+.|..+++|++.+++.+....+..    .......+|.-... 
T Consensus       295 Cv---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-  365 (430)
T KOG0640|consen  295 CV---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED-  365 (430)
T ss_pred             HH---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc-
Confidence            44   123334777778888887     999999999999999999999998886554331    11111111111110 


Q ss_pred             cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                         +++.-...      .+.+..++........---.+|.+.+..+.-||.+.-+ +++|+|...|+|..
T Consensus       366 ---yVl~pDEa------s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr  425 (430)
T KOG0640|consen  366 ---YVLFPDEA------SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR  425 (430)
T ss_pred             ---eEEccccc------cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence               11111110      11222222221111222235799999999999999999 99999999999975

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=4.1e-28  Score=225.61  Aligned_cols=238  Identities=14%  Similarity=0.250  Sum_probs=195.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +++.|  ||+.|  |.+.+++|+.|.+|+|||+++|+++.++-+|...+..+.|+                         
T Consensus       236 HtGSV--LCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-------------------------  286 (499)
T KOG0281|consen  236 HTGSV--LCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-------------------------  286 (499)
T ss_pred             CCCcE--Eeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-------------------------
Confidence            46677  75566  55699999999999999999999999998887776655555                         


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                          +.++++++.|.++.|||+.....  +..++.||...|+.+.|+  .++++++|.|.+|++|++.+++.++++.+|.
T Consensus       287 ----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHk  360 (499)
T KOG0281|consen  287 ----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK  360 (499)
T ss_pred             ----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccc
Confidence                56899999999999999986542  334557999999999995  5699999999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-  236 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~-  236 (612)
                      .+|.|+.+.  |+++++|+  .+|++||+..|.+++.+.||+.-|.++.|.  .+.+++++ .||.|++||+..+.... 
T Consensus       361 RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  361 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCcc
Confidence            999999885  89999998  899999999999999999999999999995  56799988 79999999998875431 


Q ss_pred             ---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                         ..|+..+..+..-+-.+.|       |...+++++.|.+|.+||..++-.
T Consensus       436 ~~~~~Cl~~lv~hsgRVFrLQF-------D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  436 PASTLCLRTLVEHSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cccchHHHhhhhccceeEEEee-------cceEEEeccCCCeEEEEEcCCCCc
Confidence               1233333333322233444       347799999999999999877644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.2e-25  Score=222.77  Aligned_cols=232  Identities=21%  Similarity=0.303  Sum_probs=196.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .+.|+|+++++++++.||.|++||+.+++....+..|...+.                  ++.|.+.         +.++
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~---------~~~~  108 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS------------------SVAFSPD---------GRIL  108 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE------------------EEEEcCC---------CCEE
Confidence            559999999999999999999999998888777765554444                  4444432         5677


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp  169 (612)
                      ++++.+|.|.+||+.+++....+ ..|...|.++.|+|++.++++++.|+.|++||+++++.+..+..+...+.++.|+|
T Consensus       109 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  187 (289)
T cd00200         109 SSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP  187 (289)
T ss_pred             EEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC
Confidence            88888999999999988887666 47899999999999988888888899999999999999999998888999999999


Q ss_pred             CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc
Q 007234          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (612)
                      +++.+++++  |.|++||+++++.+..+..|...+.++.|+|++.++++++ .|+.+++|++.+++..     ..+..+.
T Consensus       188 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~~  261 (289)
T cd00200         188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGHT  261 (289)
T ss_pred             CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEccccC
Confidence            998888877  8999999999999999888999999999999988777765 6999999999876533     3333444


Q ss_pred             eeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ..+..+.++     +++.++++++.||.+++|+
T Consensus       262 ~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         262 NSVTSLAWS-----PDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence            456677776     8899999999999999996

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.5e-25  Score=235.09  Aligned_cols=260  Identities=15%  Similarity=0.170  Sum_probs=196.5

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|+..  .+++|+..+++++.+.....|+...+..+..+...+ ...   -..++..|| ...+.++.|.+.+       
T Consensus        22 ~i~~~--~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~~---~~~~~l~GH-~~~V~~v~fsP~d-------   87 (493)
T PTZ00421         22 NVTPS--TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KLA---SNPPILLGQ-EGPIIDVAFNPFD-------   87 (493)
T ss_pred             ccccc--cccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cCC---CCCceEeCC-CCCEEEEEEcCCC-------
Confidence            45444  788898778888888888899886665433222111 000   011112344 3457788888754       


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCe-------EEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                       +.+|++|+.||+|++||+.++.       .+..+ .+|...|.+++|+|++ ++|++|+.|++|++||+.+++.+..+.
T Consensus        88 -~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         88 -PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             -CCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence             6789999999999999997653       23333 6899999999999975 689999999999999999999999999


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEc---CCCeEEEEEcC
Q 007234          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTD  230 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~---~d~~i~vwd~~  230 (612)
                      .|...|.+++|+|+|.+|++++  +.|++||+++++.+..+.+|.+. +..+.|.+++..+++++.   .|+.|++||++
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            9999999999999999999998  89999999999999999999875 456789998888887652   47899999998


Q ss_pred             CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceec
Q 007234          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELR  288 (612)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~  288 (612)
                      ......  ..... +....+....|+     +++.+|++++. ||.|++||+.+++.+.
T Consensus       246 ~~~~p~--~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        246 KMASPY--STVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             CCCCce--eEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence            764320  11111 223334445565     89999988874 9999999998887654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=216.69  Aligned_cols=274  Identities=14%  Similarity=0.186  Sum_probs=215.1

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..|  .|+.||.||.+||+|+-+|.|+||+..++.....+..                     ....+.|..-.|+    
T Consensus       107 DSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---------------------e~~dieWl~WHp~----  159 (399)
T KOG0296|consen  107 DSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---------------------EVEDIEWLKWHPR----  159 (399)
T ss_pred             Cce--EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---------------------ccCceEEEEeccc----
Confidence            345  5779999999999999999999999999998887742                     1223444443333    


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-Ce
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GI  162 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v  162 (612)
                        ..+++.|+.||.+.+|.+..+... +++.+|..++++=.|.|+|+.++++..||+|++||+.+++++.++..... ..
T Consensus       160 --a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~  236 (399)
T KOG0296|consen  160 --AHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL  236 (399)
T ss_pred             --ccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence              889999999999999999986544 45578999999999999999999999999999999999999998875433 67


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--------cCCCCEEEEEEeeC---CcEEEEEEcCCCeEEEEEc
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--------~h~~~v~~l~~sp~---~~~l~s~s~~d~~i~vwd~  229 (612)
                      .++.++..+..++.|+  +.+++.+..+++.+....        .+...+.++.|.|.   =++.++++ -||+|.|||+
T Consensus       237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~  315 (399)
T KOG0296|consen  237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDL  315 (399)
T ss_pred             CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEec
Confidence            8899999999999888  788888888888876665        45555666666553   34555554 7999999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  309 (612)
                      ......     ....|+..++.+.+.      + ..+|++++.+|.|+.||.++|+.+....++...+-... .+|+.+ 
T Consensus       316 a~~~~R-----~~c~he~~V~~l~w~------~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~-  381 (399)
T KOG0296|consen  316 AASTLR-----HICEHEDGVTKLKWL------N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKR-  381 (399)
T ss_pred             ccchhh-----eeccCCCceEEEEEc------C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCc-
Confidence            887644     345577776665544      4 68999999999999999999999877776665554333 567766 


Q ss_pred             cchhhhcccccceecC
Q 007234          310 ATAAIFAAKLQDIVKP  325 (612)
Q Consensus       310 ~~~~i~~~~~d~~~~~  325 (612)
                         .+++++.|+..++
T Consensus       382 ---~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  382 ---LVVTVSDDNTALV  394 (399)
T ss_pred             ---EEEEecCCCeEEE
Confidence               7888887764443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-25  Score=224.39  Aligned_cols=236  Identities=14%  Similarity=0.151  Sum_probs=199.4

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .-|||+-  .|-+--+++++|+.|..|+||+..+++.++.|..|...+.+++..|.                        
T Consensus        55 ~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt------------------------  108 (794)
T KOG0276|consen   55 EVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT------------------------  108 (794)
T ss_pred             ccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC------------------------
Confidence            3577755  89999999999999999999999999999999999998888888777                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                         ..++++++.|-.|++||.+.+-...+.+.+|+.-|.+++|+| |.+.|++||.|++|++|.+.+..+..++++|..+
T Consensus       109 ---~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG  185 (794)
T KOG0276|consen  109 ---LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG  185 (794)
T ss_pred             ---CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence               678999999999999999987655566689999999999999 6788999999999999999999999999999999


Q ss_pred             eeEEEECCCC--CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          162 ISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       162 v~~l~~spdg--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      |+|+.+-+-|  .+|++|+  .+|++||.++..+++++.||...|..+.|+|.-..+++|+ +||+++||+..+-+..  
T Consensus       186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE--  262 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE--  262 (794)
T ss_pred             cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh--
Confidence            9999998744  6999998  7999999999999999999999999999999999999987 8999999998876543  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i  278 (612)
                       ..+.. .-..+.++...      +++..++.|..+|.|.+
T Consensus       263 -~tLn~-gleRvW~I~~~------k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  263 -KTLNY-GLERVWCIAAH------KGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             -hhhhc-CCceEEEEeec------CCCCeEEEeccCCcEEE
Confidence             11111 22233333322      55566777776665543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=2.8e-25  Score=209.58  Aligned_cols=272  Identities=15%  Similarity=0.192  Sum_probs=214.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      ++++.+|+.||.++|||. .|+++..+.+|.+++.                  .+.|...++.      ...+++++.|.
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik------------------~v~~v~~n~~------~~~fvsas~Dq  169 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIK------------------SVAWVIKNSS------SCLFVSASMDQ  169 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecCCccee------------------eeEEEecCCc------cceEEEecCCc
Confidence            679999999999999997 5889999988877555                  3445544433      45799999999


Q ss_pred             cEEEEEcCCCeEEEE---eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-------------------------
Q 007234           97 DVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------------------------  148 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-------------------------  148 (612)
                      ++++|..+.++....   ...||...|.+++..++|..+++||.|.+|++|+..+                         
T Consensus       170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence            999999887764321   1248999999999999999999999999999999321                         


Q ss_pred             CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      +.++.++.+|..+|.++.|++ ...+++++  .+|+.||+.++..+.++.+ .....++..+|..++|++++ .|+.+++
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl  326 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL  326 (423)
T ss_pred             cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence            235667889999999999997 66788888  8999999999999888874 55789999999999888887 6999999


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc-eecccCCceeEeecccccCC
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK  305 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~s~  305 (612)
                      ||.+++...  ...+.+-.+...+..+.+++    .+..+|++++.||++++||+++.+ .+.                 
T Consensus       327 ~DPR~~~gs--~v~~s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~ply-----------------  383 (423)
T KOG0313|consen  327 WDPRTGDGS--VVSQSLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLY-----------------  383 (423)
T ss_pred             cCCCCCCCc--eeEEeeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcce-----------------
Confidence            999988533  23445555666777777772    345678999999999999986553 211                 


Q ss_pred             CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                            .+.+|...|.++.|. +|.++ +||+.|+++++..-
T Consensus       384 --------------------------------------dI~~h~DKvl~vdW~-~~~~I-vSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  384 --------------------------------------DIAGHNDKVLSVDWN-EGGLI-VSGGADNKLRIFKG  417 (423)
T ss_pred             --------------------------------------eeccCCceEEEEecc-CCceE-EeccCcceEEEecc
Confidence                                                  345566678888886 45566 89999999988753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=238.02  Aligned_cols=236  Identities=15%  Similarity=0.160  Sum_probs=203.1

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      ...|+++--+|.|++||.+.+.++.++ ..|.++|.+++|+|++..|++|+.|..|++|+..+.+++.++.+|-+-|..+
T Consensus        21 rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~   99 (1202)
T KOG0292|consen   21 RPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV   99 (1202)
T ss_pred             CCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence            678999999999999999999999888 5799999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-------
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-------  236 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~-------  236 (612)
                      .|++.-.++++++  .+|+||+.++++++..+.||...|.|..|+|....+++++ -|.+|+|||+..-++..       
T Consensus       100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e  178 (1202)
T KOG0292|consen  100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS-LDQTVRVWDISGLRKKNKAPGSLE  178 (1202)
T ss_pred             eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec-ccceEEEEeecchhccCCCCCCch
Confidence            9999999999999  7999999999999999999999999999999998999987 69999999986433211       


Q ss_pred             -----------------ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234          237 -----------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (612)
Q Consensus       237 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (612)
                                       ....+.++.+..-+..++|.     |.-..+++|+.|..|++|.....+.             
T Consensus       179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmnetKa-------------  240 (1202)
T KOG0292|consen  179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMNETKA-------------  240 (1202)
T ss_pred             hhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEeccccc-------------
Confidence                             11123345556666667776     7778889999999999996532211             


Q ss_pred             ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                |              ..+++.+|.+.|.++-|.|...++ +|.|.|+++|+|+.
T Consensus       241 --------------------------W--------------EvDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm  279 (1202)
T KOG0292|consen  241 --------------------------W--------------EVDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDM  279 (1202)
T ss_pred             --------------------------e--------------eehhhhcccCCcceEEecCcccee-EecCCCccEEEEec
Confidence                                      0              022778999999999999999999 99999999999998


Q ss_pred             ecc
Q 007234          380 QNR  382 (612)
Q Consensus       380 ~~~  382 (612)
                      ..+
T Consensus       280 ~kR  282 (1202)
T KOG0292|consen  280 TKR  282 (1202)
T ss_pred             ccc
Confidence            655

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=1.6e-25  Score=235.19  Aligned_cols=235  Identities=18%  Similarity=0.307  Sum_probs=202.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      +|..|.  +.++++++.|.+|++||..++..+.. +.+|.+.+.++.|...                           +.
T Consensus       212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~  262 (537)
T KOG0274|consen  212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD  262 (537)
T ss_pred             hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence            333555  56788999999999999999999888 9999998887777654                           77


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (612)
                      ++++|+.|.++++||..+|++...+ .+|.+.|.++...  ...+++|+.|.+|++|++.++..+..+.+|..+|.++..
T Consensus       263 ~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~  339 (537)
T KOG0274|consen  263 KLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL  339 (537)
T ss_pred             EEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence            8999999999999999999999777 5899999999875  446888999999999999999999999999999999999


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      +  +.++++|+  ++|++||+.+++++..+.||...|.++.+.+. ..+++++ .|++|++||+++..    .|+.++.+
T Consensus       340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~  411 (537)
T KOG0274|consen  340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG  411 (537)
T ss_pred             c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence            8  78888888  99999999999999999999999999988765 7888887 79999999999983    15566776


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      +...+....       ..+++|++++.||+|++||..+++.++..
T Consensus       412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTL  449 (537)
T ss_pred             Ccccccccc-------cccceeEeccccccEEEeecccCceeeee
Confidence            666654443       34689999999999999999888876533

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.9e-25  Score=213.92  Aligned_cols=275  Identities=18%  Similarity=0.260  Sum_probs=222.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      ...|....+++|+.|..+.++|..+++.+..|+||.-.+....|+++                           ...+++
T Consensus       226 d~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~v~~  278 (506)
T KOG0289|consen  226 DIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDTVIT  278 (506)
T ss_pred             eecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhheee
Confidence            55666678999999999999999999999999998887777777766                           677899


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC--CCCeeEEEECC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMAVSS  169 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~~sp  169 (612)
                      ++.|-.|+||........ .....|..+|+.+..+|.|.||++++.||+..+.|++++.++......  .-.+++.+|+|
T Consensus       279 aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             cCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            999999999999877765 334679999999999999999999999999999999999988876653  23689999999


Q ss_pred             CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc
Q 007234          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (612)
                      ||.++.+|.  |.+++||++++..+..|++|.++|..++|+.+|.||++++ +|+.|++||+++.+..   ..+.+....
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~~~~  433 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLDEKK  433 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeeccccc
Confidence            999999998  9999999999999999999999999999999999999998 7999999999987643   233333322


Q ss_pred             eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCC
Q 007234          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (612)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~  327 (612)
                       .+..+.|.     +.|.+|+.++.|=+|++++-.+.+           +.                             
T Consensus       434 -~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k~-----------W~-----------------------------  467 (506)
T KOG0289|consen  434 -EVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTKS-----------WT-----------------------------  467 (506)
T ss_pred             -cceeEEEc-----CCCCeEEeecceeEEEEEeccccc-----------ce-----------------------------
Confidence             45667786     899999999777666665421110           00                             


Q ss_pred             ceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                   ....+..|.+....+.|..+.+++ +++|.|...++..
T Consensus       468 -------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a  504 (506)
T KOG0289|consen  468 -------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA  504 (506)
T ss_pred             -------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence                         011223345556677788888888 9999888877654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.3e-26  Score=201.25  Aligned_cols=245  Identities=17%  Similarity=0.195  Sum_probs=201.2

Q ss_pred             EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC
Q 007234          111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (612)
Q Consensus       111 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~  188 (612)
                      ..+.+|.++|.++.|+-+|++.++|+.|.+|++|+...|.+++++.+|...|..++.+.|+..+++++  ..+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            34478999999999999999999999999999999999999999999999999999999999999888  6899999999


Q ss_pred             CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEE
Q 007234          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (612)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (612)
                      |+.+++|.+|.+.|+.+.|+.+...+++++ -|..+++||.+.....   +++.+......+..+..       .++.++
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-fD~s~r~wDCRS~s~e---PiQildea~D~V~Si~v-------~~heIv  159 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-FDSSVRLWDCRSRSFE---PIQILDEAKDGVSSIDV-------AEHEIV  159 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEecc-ccceeEEEEcccCCCC---ccchhhhhcCceeEEEe-------cccEEE
Confidence            999999999999999999999999999887 6999999999887644   55555554444455544       357899


Q ss_pred             EEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeecc
Q 007234          269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN  348 (612)
Q Consensus       269 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h  348 (612)
                      +|+.||+++.||++.|+.....-...+...+   |+++++    ..++++.++++++.|        .......+...+|
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs---~s~d~n----c~La~~l~stlrLlD--------k~tGklL~sYkGh  224 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVS---FSKDGN----CSLASSLDSTLRLLD--------KETGKLLKSYKGH  224 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhcCCcceeEE---ecCCCC----EEEEeeccceeeecc--------cchhHHHHHhccc
Confidence            9999999999999999887544444333332   788888    888899988777766        2233333455677


Q ss_pred             CCC--eEEEEecCCCceEeccccceeeecceeeecc
Q 007234          349 SGE--DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       349 ~~~--v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                      .+.  -..++++..-..+ ++||+|+.+.+|++.+.
T Consensus       225 kn~eykldc~l~qsdthV-~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  225 KNMEYKLDCCLNQSDTHV-FSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             ccceeeeeeeecccceeE-EeccCCceEEEEEeccc
Confidence            654  4556677777777 99999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.5e-25  Score=226.69  Aligned_cols=273  Identities=16%  Similarity=0.230  Sum_probs=219.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      +.||. .+.||.|. ...|.+|+..++........+                  ...++++.|.+.         +.+|+
T Consensus       183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~La  233 (484)
T KOG0305|consen  183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLA  233 (484)
T ss_pred             hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEE
Confidence            37774 45677765 347999999999876655432                  335566666655         89999


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEECC
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSS  169 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~sp  169 (612)
                      +|..+|.|.|||..+.+.+..+...|...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++
T Consensus       234 vG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  234 VGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             EeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence            999999999999999988877754599999999997  56799999999999999998876655 888999999999999


Q ss_pred             CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC-cEEEEEE-cCCCeEEEEEcCCCccccceeeEeecC
Q 007234          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      |++++|+|+  +.+.|||.....+...+..|.+.|..++|+|-. ..|++|+ ..|+.|++||..++...     .....
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vdt  386 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVDT  386 (484)
T ss_pred             CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----ccccc
Confidence            999999999  899999998888999999999999999999954 4566643 45899999999988744     33434


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEE-e-cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAI-S-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~-s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~  323 (612)
                      ...+ +.+.|+     +..+.|+++ + .++.|.||+..+.+.+                                    
T Consensus       387 gsQV-csL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~~------------------------------------  424 (484)
T KOG0305|consen  387 GSQV-CSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKLV------------------------------------  424 (484)
T ss_pred             CCce-eeEEEc-----CCCCEEEEecCCCCCcEEEEecccccee------------------------------------
Confidence            4444 555565     666555555 3 3778999987663321                                    


Q ss_pred             cCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                         ..+.+|...|..+++||||..+ ++|+.|.++++|++.+
T Consensus       425 -------------------~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  425 -------------------AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLFD  462 (484)
T ss_pred             -------------------eeecCCcceeEEEEECCCCCEE-EEecccCcEEeccccC
Confidence                               1567899999999999999999 9999999999999854

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3.5e-25  Score=199.09  Aligned_cols=246  Identities=14%  Similarity=0.255  Sum_probs=203.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--eccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +.++|.++  +|+-+|..||+|+.|++++||++..++.....  .+|.+.                  ...++|.+.+  
T Consensus        19 ~~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~s------------------vdql~w~~~~--   76 (313)
T KOG1407|consen   19 HVQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDS------------------VDQLCWDPKH--   76 (313)
T ss_pred             hhhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcc------------------hhhheeCCCC--
Confidence            45678777  99999999999999999999999877655433  333332                  3345666665  


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                            ..++++++.|.+|++||++++++..++.  ..+.=.-+.|+|+|.+++.++.|..|...|.++.+.....+ ..
T Consensus        77 ------~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~  147 (313)
T KOG1407|consen   77 ------PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK  147 (313)
T ss_pred             ------CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence                  6789999999999999999999987774  33444567899999999999999999999999888777655 34


Q ss_pred             CCeeEEEECCCCCEEEEe-C-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          160 KGISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~-~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ..+.-++|+.++.+++.. + |.|.|.....-+++..+..|+....||.|+|+|++|++++ .|-.+.+||++.--    
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi----  222 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI----  222 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh----
Confidence            467788888777766544 4 9999999999999999999999999999999999999998 69999999997754    


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                       |...+......+..+.|+     .||++|+++|+|..|-|=++++|..+..
T Consensus       223 -C~R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  223 -CERCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             -hheeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEEE
Confidence             556667778888899998     9999999999999999988888877653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=8.3e-27  Score=226.33  Aligned_cols=240  Identities=21%  Similarity=0.277  Sum_probs=192.2

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC-CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                      ++++.|++..        +.++++|+.|+.|+||++-. +.+++++ .+|..+|.+++|+++|..|+++|.|+.|++||+
T Consensus       217 vsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  217 VSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             cchhhhccce--------eeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            3455555543        78999999999999999987 7777666 689999999999999999999999999999999


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      ++|+++..|.. ...++|+.|+||+ +.+++|+  +.|+.||+++++.++++..|-+.|..+.|-++|+++++++ +|++
T Consensus       288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddks  365 (503)
T KOG0282|consen  288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDKS  365 (503)
T ss_pred             ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCcc
Confidence            99999999984 4578999999998 6666776  8999999999999999999999999999999999999997 7999


Q ss_pred             EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccccc
Q 007234          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (612)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (612)
                      ++||+.+.+-...    +........+-++...     |++.++++-+.|+.|.+|.+...-.+.               
T Consensus       366 ~riWe~~~~v~ik----~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~n---------------  421 (503)
T KOG0282|consen  366 VRIWENRIPVPIK----NIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLN---------------  421 (503)
T ss_pred             EEEEEcCCCccch----hhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccC---------------
Confidence            9999998875441    1112222222334444     999999999999999999753321110               


Q ss_pred             CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccC--CCeEEEEecCCCceEeccccceeeecceeee
Q 007234          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS--GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~--~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                         .+                                  +.+.+|.  +.-..+.|||||.+| +||+.||.+.+|+..
T Consensus       422 ---kk----------------------------------K~feGh~vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  422 ---KK----------------------------------KRFEGHSVAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK  462 (503)
T ss_pred             ---Hh----------------------------------hhhcceeccCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence               00                                  0122332  235678899999999 999999999999873

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=2.7e-25  Score=203.74  Aligned_cols=237  Identities=14%  Similarity=0.221  Sum_probs=202.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++++|..+  .|.+|++.++++|.|.+|+.||.++|+++..+++|..-++.+.  +.                       
T Consensus        89 HsgAVM~l--~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~-----------------------  141 (338)
T KOG0265|consen   89 HSGAVMEL--HGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS-----------------------  141 (338)
T ss_pred             ccceeEee--eeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence            57889666  9999999999999999999999999999999988876555332  11                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                       +.+..++.+|+.||++++||+++...++.+.  ..-.++++.|..++..+++|+-|+.|++||++.+....++.+|.+.
T Consensus       142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt  218 (338)
T KOG0265|consen  142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT  218 (338)
T ss_pred             -ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence             1126788899999999999999988876653  4567999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCC----eeEEEEecCCC----CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~----~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      |+.+..+|+|.++.+-+  .++++||++..    +++..+.||..    ....++|+|+++.+-+++ .|+.+++||...
T Consensus       219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~  297 (338)
T KOG0265|consen  219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS  297 (338)
T ss_pred             eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence            99999999999999888  89999999753    45778877653    245679999999887776 699999999877


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw  279 (612)
                      ..     .++.++.+...+..+.|.     |...++.+++.|++|++=
T Consensus       298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEee
Confidence            55     567788888888888897     899999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=9.8e-25  Score=247.07  Aligned_cols=241  Identities=18%  Similarity=0.264  Sum_probs=195.9

Q ss_pred             cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         4 ~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ++|..+  +|+| ++.+||+++.||+|+|||+.+++.+..+.+|...+.++.|++                  .+     
T Consensus       533 ~~v~~l--~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p------------------~~-----  587 (793)
T PLN00181        533 SKLSGI--CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS------------------AD-----  587 (793)
T ss_pred             CceeeE--EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC------------------CC-----
Confidence            345444  8987 478999999999999999999999998887776666555543                  22     


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe-cCCCEEEEEecCCcEEEEECCCCc-eeEEEecCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK  160 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~  160 (612)
                         +.+|++|+.||.|++||+.++..+..+.  +...|.++.|+ ++|..|++|+.||.|++||++.++ .+..+.+|..
T Consensus       588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence               6789999999999999999998887663  34689999995 478999999999999999998765 5677888999


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCC------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .|.++.|. ++.++++++  ++|++||+..+      +++..+.+|...+..+.|+|++.++++++ .|+.|++|+....
T Consensus       663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~  740 (793)
T PLN00181        663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP  740 (793)
T ss_pred             CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence            99999997 677888877  89999999743      56888999999999999999999999987 7999999998655


Q ss_pred             ccccce--------eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          233 KKQSAS--------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       233 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ......        .-....+....+..++|+     +++..|++++.||.|++|++
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence            322000        000112334567788887     99999999999999999985

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.1e-24  Score=227.48  Aligned_cols=229  Identities=14%  Similarity=0.176  Sum_probs=174.9

Q ss_pred             EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEE
Q 007234           23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA  102 (612)
Q Consensus        23 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd  102 (612)
                      |+.++.|++|+......+..+.+|.+.|.+                  +.|.+.+        +.+|++|+.||.|+|||
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~------------------lafsP~~--------~~lLASgS~DgtIrIWD  103 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILD------------------LQFNPCF--------SEILASGSEDLTIRVWE  103 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEE------------------EEEcCCC--------CCEEEEEeCCCeEEEEE
Confidence            455788999998877777778777665554                  4444432        57899999999999999


Q ss_pred             cCCCeE-E------EEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234          103 VSAGQL-K------WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (612)
Q Consensus       103 ~~~~~~-~------~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l  174 (612)
                      +.++.. .      .....+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|
T Consensus       104 i~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        104 IPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             CCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence            986431 1      1123679999999999998876 5789999999999999998877776 56789999999999999


Q ss_pred             EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEE-----EEeeCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeec
Q 007234          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAME  244 (612)
Q Consensus       175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~  244 (612)
                      ++++  +.|++||+++++.+.++.+|.+.+...     .|++++.+++++|..+   +.|++||++.....  .....+.
T Consensus       183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld  260 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSID  260 (568)
T ss_pred             EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEec
Confidence            9887  899999999999999999999875443     3458889999988432   47999999864322  1222333


Q ss_pred             CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .....+......     ++|.++++|+.|+.|++|++..+.
T Consensus       261 ~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        261 NASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCCc
Confidence            333333333333     678999999999999999987664

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.2e-25  Score=199.66  Aligned_cols=281  Identities=13%  Similarity=0.160  Sum_probs=214.2

Q ss_pred             EEEEcCC-CCEEEEE-------eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234           10 LTSFSPA-LDYFAIC-------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus        10 ~~~fspd-g~~las~-------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++.|||- .++||.+       ...|++.|.++..++-+.++....                .....-.++|....    
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d----------------~~D~LfdV~Wse~~----   72 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD----------------TEDGLFDVAWSENH----   72 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee----------------cccceeEeeecCCC----
Confidence            5599992 2344433       136899999987555454443110                12234567787765    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                          .+.+++++.||.+++||.......-...+.|...|.++.|++ +++.++++|.|++|++|+...++.+++|.+|..
T Consensus        73 ----e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~  148 (311)
T KOG0277|consen   73 ----ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS  148 (311)
T ss_pred             ----cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc
Confidence                678999999999999997654433344477999999999998 556688889999999999999999999999999


Q ss_pred             CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCcccc
Q 007234          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      .|...+|+| .++.+++++  +.+++||++..-....+..|...+.++.|+.-.. .+++++ -|+.|+.||++.-+.  
T Consensus       149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~-vd~~vr~wDir~~r~--  225 (311)
T KOG0277|consen  149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG-VDNLVRGWDIRNLRT--  225 (311)
T ss_pred             EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC-CCceEEEEehhhccc--
Confidence            999999999 567788777  8999999987554455899999999999997554 555555 799999999998764  


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                        +++.+..+...+..+.|++    .....|++++.|=+++|||.......                             
T Consensus       226 --pl~eL~gh~~AVRkvk~Sp----h~~~lLaSasYDmT~riw~~~~~ds~-----------------------------  270 (311)
T KOG0277|consen  226 --PLFELNGHGLAVRKVKFSP----HHASLLASASYDMTVRIWDPERQDSA-----------------------------  270 (311)
T ss_pred             --cceeecCCceEEEEEecCc----chhhHhhhccccceEEecccccchhh-----------------------------
Confidence              3677788888899999983    23467899999999999986533221                             


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC-CCceEeccccceeeeccee
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~-dg~~l~~s~s~d~~~~~w~  378 (612)
                                               .++..-|+++|..+.||+ ++.++ ++.+-|..+.+|+
T Consensus       271 -------------------------~e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~  307 (311)
T KOG0277|consen  271 -------------------------IETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN  307 (311)
T ss_pred             -------------------------hhhhhccceEEeccccccccCcee-eecccccceeeec
Confidence                                     113345777788888886 45566 9999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-24  Score=197.19  Aligned_cols=240  Identities=14%  Similarity=0.192  Sum_probs=193.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +...||++  +|+|.|++||++|.|.++.||.-..+  +++..+.+|...|.+++|+.+                     
T Consensus        60 hkrsVRsv--Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---------------------  116 (312)
T KOG0645|consen   60 HKRSVRSV--AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---------------------  116 (312)
T ss_pred             chheeeee--eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---------------------
Confidence            45789888  99999999999999999999976644  578889999988887777777                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---CCceeEE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGK  154 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~~~~~~~  154 (612)
                            +.+||+++.|..|.||.+..+..  ...+++.|+..|-.+.|+|...+|+++|.|++|++|+-.   ..++.++
T Consensus       117 ------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t  190 (312)
T KOG0645|consen  117 ------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT  190 (312)
T ss_pred             ------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence                  99999999999999999986543  234557899999999999999999999999999999765   3478999


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      +.+|...|.+++|+|.|..|++++  ++++||-..+.-    -.-|..+++.+.|. +| .+++++ +|+.|++|.-...
T Consensus       191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~g-gD~~i~lf~~s~~  263 (312)
T KOG0645|consen  191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG-VIASGG-GDDAIRLFKESDS  263 (312)
T ss_pred             ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc-ceEecc-CCCEEEEEEecCC
Confidence            999999999999999999999998  899999865321    12377889999998 44 688887 7999999986643


Q ss_pred             cc-ccceeeE-eecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECC
Q 007234          233 KK-QSASCVL-AMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       233 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~  282 (612)
                      -. .....+. ....+...+.++.+.     | .+.+|++++.||.|++|.+.
T Consensus       264 ~d~p~~~l~~~~~~aHe~dVNsV~w~-----p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  264 PDEPSWNLLAKKEGAHEVDVNSVQWN-----PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCchHHHHHhhhcccccccceEEEc-----CCCCCceeecCCCceEEEEEec
Confidence            11 1111111 112344577788887     6 37899999999999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=4.3e-26  Score=217.11  Aligned_cols=279  Identities=17%  Similarity=0.158  Sum_probs=221.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +.+.|..+  .|=++...|++|+.|..|++|++..++  .+.++.+..+++..+.|.++                     
T Consensus       174 h~gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~---------------------  230 (459)
T KOG0288|consen  174 HEGEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD---------------------  230 (459)
T ss_pred             ccccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC---------------------
Confidence            34567666  899998899999999999999998776  55666665555655555555                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                            +..++.++.|+.+++|++...+...++ .+|++.|+++.|......+++|+.|.+|+.||+....+.+++-. .
T Consensus       231 ------~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~  302 (459)
T KOG0288|consen  231 ------NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-G  302 (459)
T ss_pred             ------CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-c
Confidence                  788999999999999999999988777 57999999999988776799999999999999999888877553 3


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ..+..|+.+  +..+++|.  ++|++||.++..+....+.+. .|+++..+++|..+++++ .|.++.+.|+++....  
T Consensus       303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~--  376 (459)
T KOG0288|consen  303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR--  376 (459)
T ss_pred             ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE--
Confidence            455666665  44566666  799999999999999998776 899999999999999986 7999999999987643  


Q ss_pred             eeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          238 SCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       238 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                       ..+...  .....++-+.|+     |++.|+++||.||.|+||++.+++.-...+..                      
T Consensus       377 -~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s----------------------  428 (459)
T KOG0288|consen  377 -QTFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS----------------------  428 (459)
T ss_pred             -EEeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEeccC----------------------
Confidence             112211  111224556676     99999999999999999999888763211100                      


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecce
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w  377 (612)
                                                     .....|.+++|+|.|..| ++++.++..++|
T Consensus       429 -------------------------------~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW  458 (459)
T KOG0288|consen  429 -------------------------------TSNAAITSLSWNPSGSGL-LSADKQKAVTLW  458 (459)
T ss_pred             -------------------------------CCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence                                           000168999999999999 999999998888

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.1e-25  Score=198.70  Aligned_cols=235  Identities=16%  Similarity=0.227  Sum_probs=190.1

Q ss_pred             EEEcCCC-CEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           11 TSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        11 ~~fspdg-~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ++||++. +.+++++.||++++||..- ...++.++.|...|.                  .+.|....        +..
T Consensus        66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~------------------Svdwn~~~--------r~~  119 (311)
T KOG0277|consen   66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY------------------SVDWNTVR--------RRI  119 (311)
T ss_pred             eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE------------------Eecccccc--------cee
Confidence            3899965 4677888999999999642 235666666655444                  45555544        667


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (612)
                      +++++.||+|++|++..++.+.++ .+|...|....|+| ..+.++++|.|+++++||++.......+..|...+.|+.|
T Consensus       120 ~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw  198 (311)
T KOG0277|consen  120 FLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW  198 (311)
T ss_pred             EEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence            888899999999999999988776 68999999999999 6778999999999999999865555558999999999999


Q ss_pred             CC-CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          168 SS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       168 sp-dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      +. +...+++|+  +.|+.||+++. .++.++.+|.-.|..+.|||... .|+++ +.|-++++||...+..    ++.+
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-sYDmT~riw~~~~~ds----~~e~  273 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-SYDMTVRIWDPERQDS----AIET  273 (311)
T ss_pred             cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-cccceEEecccccchh----hhhh
Confidence            97 556777777  89999999875 46888999999999999999765 45555 4899999999886643    3455


Q ss_pred             ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ..++..++..+.++.    .++.++++++.|+.++||+.
T Consensus       274 ~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  274 VDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhccceEEecccccc----ccCceeeecccccceeeecc
Confidence            668888888888872    46789999999999999984

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=5.8e-26  Score=209.48  Aligned_cols=237  Identities=18%  Similarity=0.231  Sum_probs=199.3

Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee-ccCCccccccccccccccccccceeEEEeeecccc
Q 007234            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |...+|  +|++||.|.+.||+|+.||.|+||.+.+|.|++.|. .|..+++++.|+.+                     
T Consensus       261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD---------------------  317 (508)
T KOG0275|consen  261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD---------------------  317 (508)
T ss_pred             ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---------------------
Confidence            346788  677999999999999999999999999999999997 78888888888887                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                            +..+++++.|.++++.-+.+|+++..+ .+|++.|+...|.+||..++++|.||+|++|+.++.+++.+|+...
T Consensus       318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence                  788999999999999999999999777 7899999999999999999999999999999999999999998644


Q ss_pred             C--CeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEec---CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 K--GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~--~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .  +|.++-.-|. -..++++.  +++++.++ .|+.++.|..   ..+..-+...+|.|.++++.+ +|+.++.|...+
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s  468 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS  468 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence            3  7888887774 45666665  89999998 5778888853   234566778999999999998 899999999999


Q ss_pred             CccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          232 VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ++..     ..+. |...++ .+...     |..+.+++-++||.+++|.
T Consensus       469 G~LE-----~tl~VhEkdvI-Gl~HH-----PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  469 GKLE-----RTLPVHEKDVI-GLTHH-----PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             Ccee-----eeeeccccccc-ccccC-----cccchhhhhcccchhhhcC
Confidence            8755     2223 333343 34443     7889999999999999994

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-24  Score=219.16  Aligned_cols=240  Identities=19%  Similarity=0.262  Sum_probs=201.4

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..|.++  .|+++|++||+|..+|.|.|||..+.+.+..+.+                 +....+.+++|.         
T Consensus       218 ~~vtSv--~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~---------  269 (484)
T KOG0305|consen  218 ELVTSV--KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN---------  269 (484)
T ss_pred             CceEEE--EECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence            456555  9999999999999999999999999888887764                 124466788886         


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                        ...+.+|+.+|.|..+|++..+.......+|...|.++.|++|+.++++|+.|+.+.+||....+++..+..|...|.
T Consensus       270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence              457899999999999999988776565678999999999999999999999999999999988899999999999999


Q ss_pred             EEEECC-CCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE-EEcCCCeEEEEEcCCCccccc
Q 007234          164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       164 ~l~~sp-dg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s-~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      +++|+| ...+||+|+    +.|++||+.+++.+..+. ..+.|.++.|++..+-+++ .|..+..|.||+..+.+..  
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~--  424 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV--  424 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence            999999 567888887    589999999999988875 5678999999998865554 4555778999999886533  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                         ..+..|...+-.+..+     |||..+++|+.|.++++|++-..
T Consensus       425 ---~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  425 ---AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence               3344444445556676     99999999999999999997554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=8e-25  Score=213.65  Aligned_cols=284  Identities=14%  Similarity=0.197  Sum_probs=198.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      |+..|.+|  ++.|.|..|++||.|.+|++||....... ..|+....              .....+..+.|.+.    
T Consensus       166 gtk~Vsal--~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--------------~E~h~i~sl~ys~T----  225 (641)
T KOG0772|consen  166 GTKIVSAL--AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--------------CETHQINSLQYSVT----  225 (641)
T ss_pred             CceEEEEe--eecCCCceeeeccccceEEEEecccccccchhhhccCc--------------ccccccceeeecCC----
Confidence            46678555  99999999999999999999999754321 11211100              00122333444332    


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEE-----------eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~-----------~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~  148 (612)
                           +..|++.+.+...+|+|-..-+....           ..+||...++|.+|+|.. ..|+||+.||++++||+..
T Consensus       226 -----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~  300 (641)
T KOG0772|consen  226 -----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN  300 (641)
T ss_pred             -----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence                 78899999999999999654333211           136899999999999965 4599999999999999875


Q ss_pred             Cc-eeEEEec-----CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee---EEEEecCCC--CEEEEEEeeCCcEEE
Q 007234          149 GS-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVL  215 (612)
Q Consensus       149 ~~-~~~~~~~-----~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~--~v~~l~~sp~~~~l~  215 (612)
                      .+ +.+.++.     ..-++++++|+|||+++|+|.  |+|.+|+......   ...-..|..  .|+|+.||+||++|+
T Consensus       301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            43 3444432     233789999999999999888  9999999754322   222356776  899999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec------CCcEEEEECCCcceecc
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELRN  289 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~------dg~i~iwd~~~~~~~~~  289 (612)
                      +-| .|+++++||++..+...  .++..-.......-++|+     |+.++|++|+.      .|.+.+||..+.+.+..
T Consensus       381 SRg-~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k  452 (641)
T KOG0772|consen  381 SRG-FDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK  452 (641)
T ss_pred             hcc-CCCceeeeeccccccch--hhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence            998 69999999999876431  111111122223445666     99999999965      57899999999888776


Q ss_pred             cCCceeEeecccccCCCCcccchhhhccccccee
Q 007234          290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (612)
Q Consensus       290 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~  323 (612)
                      +......+.. ..+-|.-+    .|.+++.+|.+
T Consensus       453 i~i~~aSvv~-~~WhpkLN----Qi~~gsgdG~~  481 (641)
T KOG0772|consen  453 IDISTASVVR-CLWHPKLN----QIFAGSGDGTA  481 (641)
T ss_pred             ecCCCceEEE-Eeecchhh----heeeecCCCce
Confidence            6655443332 22555544    77788776543

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.7e-23  Score=219.77  Aligned_cols=205  Identities=14%  Similarity=0.201  Sum_probs=163.6

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-------EEEEeeccCCccccccccccccccccccceeEEEe
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      |+++|.++  +|+| ++++||+|+.||+|+|||+.++.       .+..+.+|...+.                  ++.|
T Consensus        74 H~~~V~~v--~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~------------------~l~f  133 (493)
T PTZ00421         74 QEGPIIDV--AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG------------------IVSF  133 (493)
T ss_pred             CCCCEEEE--EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE------------------EEEe
Confidence            45778655  9999 89999999999999999997653       3445555554444                  5555


Q ss_pred             eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE
Q 007234           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG  153 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~  153 (612)
                      .+..        +.+|++|+.||.|+|||+.+++....+ .+|...|.+++|+|+|..|++++.|++|++||+++++.+.
T Consensus       134 ~P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~  204 (493)
T PTZ00421        134 HPSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS  204 (493)
T ss_pred             CcCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence            5432        468999999999999999999887666 6799999999999999999999999999999999999999


Q ss_pred             EEecCCCC-eeEEEECCCCCEEEEeC------CeEEEEEcCCCe-eEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          154 KFRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       154 ~~~~~~~~-v~~l~~spdg~~l~~~~------g~i~lwd~~~~~-~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                      .+.+|... +..+.|.+++..+++++      +.|++||+++.. ++.....+ ...+....|+++++++++++..|+.|
T Consensus       205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            99888764 45778999887777643      689999998754 34433333 34566677899999998887569999


Q ss_pred             EEEEcCCCccc
Q 007234          225 ALWRTDGVKKQ  235 (612)
Q Consensus       225 ~vwd~~~~~~~  235 (612)
                      ++||+.+++..
T Consensus       285 riwdl~~~~~~  295 (493)
T PTZ00421        285 RCFELMNERLT  295 (493)
T ss_pred             EEEEeeCCceE
Confidence            99999987643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=195.62  Aligned_cols=287  Identities=18%  Similarity=0.203  Sum_probs=196.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |...|.++  +||.||++||+++.|++|+||+++......    |.    ++..+.  .    ....+.+.|.+.-    
T Consensus        85 H~~~vt~~--~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e----Hr----~~R~nv--e----~dhpT~V~FapDc----  144 (420)
T KOG2096|consen   85 HKKEVTDV--AFSSDGKKLATISGDRSIRLWDVRDFENKE----HR----CIRQNV--E----YDHPTRVVFAPDC----  144 (420)
T ss_pred             cCCceeee--EEcCCCceeEEEeCCceEEEEecchhhhhh----hh----Hhhccc--c----CCCceEEEECCCc----
Confidence            45788655  999999999999999999999998643211    10    000000  0    1122333433332    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCC---CeEE--------EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSA---GQLK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS  150 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~---~~~~--------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~  150 (612)
                          ..+++.+-...++++|.+..   |...        ..+...|...|..+-...++.++++|+.|..|.+|+++ |+
T Consensus       145 ----~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  145 ----KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             ----ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence                33444444445589997743   2111        12345677888888888889999999999999999998 99


Q ss_pred             eeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC---CC-----eeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS---DH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       151 ~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~---~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      .+..+......-+..+++|+|+++++++  -.|++|.+-   .|     ..+.++.||.+.|..++|+|+...+++.+ .
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-k  298 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-K  298 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-c
Confidence            9999988777778899999999999988  689999862   22     34567899999999999999999999997 8


Q ss_pred             CCeEEEEEcCCCcccc--ceeeEe----e-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          221 ERYIALWRTDGVKKQS--ASCVLA----M-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~--~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      ||.+++||++-.-...  ......    + ......+ -+..+     |+|..|+.+.. ..+++|..++|+...+.   
T Consensus       299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~g-s~l~~~~se~g~~~~~~---  368 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSFG-SDLKVFASEDGKDYPEL---  368 (420)
T ss_pred             CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeecC-CceEEEEcccCccchhH---
Confidence            9999999986421110  000011    1 1112222 34454     88887766543 47888877666543211   


Q ss_pred             eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (612)
Q Consensus       294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~  373 (612)
                                                                       |  ..|...|.+++|++||+++ +|++ |+-
T Consensus       369 -------------------------------------------------e--~~h~~~Is~is~~~~g~~~-atcG-dr~  395 (420)
T KOG2096|consen  369 -------------------------------------------------E--DIHSTTISSISYSSDGKYI-ATCG-DRY  395 (420)
T ss_pred             -------------------------------------------------H--HhhcCceeeEEecCCCcEE-eeec-cee
Confidence                                                             1  2477789999999999999 9988 444


Q ss_pred             ecce
Q 007234          374 KRGR  377 (612)
Q Consensus       374 ~~~w  377 (612)
                      +++.
T Consensus       396 vrv~  399 (420)
T KOG2096|consen  396 VRVI  399 (420)
T ss_pred             eeee
Confidence            4443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=210.01  Aligned_cols=230  Identities=14%  Similarity=0.192  Sum_probs=191.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++|-.||++||.|...|.|+|||..+...+..+..|..++....|++.                  +        +..+
T Consensus        73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~------------------d--------~t~l  126 (487)
T KOG0310|consen   73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ------------------D--------NTML  126 (487)
T ss_pred             EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc------------------C--------CeEE
Confidence            3489999999999999999999997776677778877777766666554                  1        6778


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAV  167 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~  167 (612)
                      ++|+.|+.+++||+.++... ....+|++.|.|.+|+|.. ..++|||.||+|++||+++. ..+.++. |..+|.++.+
T Consensus       127 ~s~sDd~v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~  204 (487)
T KOG0310|consen  127 VSGSDDKVVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLA  204 (487)
T ss_pred             EecCCCceEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEE
Confidence            88888999999999999874 3447899999999999954 47999999999999999887 5666665 7889999999


Q ss_pred             CCCCCEEEEeC-CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234          168 SSDGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       168 spdg~~l~~~~-g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      -|.|.++++++ ..+++||+.+| +.+..+..|...|+|+++..++..|+++| -|+.|++||+.+-+     .+....-
T Consensus       205 lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~~  278 (487)
T KOG0310|consen  205 LPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWKY  278 (487)
T ss_pred             cCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeeec
Confidence            99999999998 79999999855 55666666999999999999999999998 69999999976655     4456666


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw  279 (612)
                      +..++++. .+     |++..++.|..+|.+.+=
T Consensus       279 ~~pvLsia-vs-----~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  279 PGPVLSIA-VS-----PDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ccceeeEE-ec-----CCCceEEEecccceeeee
Confidence            66666654 33     899999999999988765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=218.19  Aligned_cols=231  Identities=17%  Similarity=0.215  Sum_probs=191.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCc------EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        15 pdg~~las~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      |.++||.+||.||.|++|++....      ++..+..|...+..++....                           ++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t   87 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT   87 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence            467789999999999999886432      46677888888887777666                           778


Q ss_pred             EEEEECCCcEEEEEcCCC--eEEEEeccCCCCCeEEEEE-ecCCCEEEEEecCCcEEEEECCCC--ceeEE--------E
Q 007234           89 LVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------F  155 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~-sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~--------~  155 (612)
                      +++++.|-+|++|+...+  -+...+ ..|...|.|+++ .++...+++||.|+.|.+||+.++  +.+..        +
T Consensus        88 lIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl  166 (735)
T KOG0308|consen   88 LISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL  166 (735)
T ss_pred             eEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence            999999999999999887  344333 679999999999 788889999999999999999987  23222        2


Q ss_pred             e-cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          156 R-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       156 ~-~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      . ++..+|++++.++.|..+++|+  +.+++||.++++.+..+.||...|..+..++||+.+++++ .||+|++||+...
T Consensus       167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQ  245 (735)
T ss_pred             CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeecccc
Confidence            2 5677999999999999999988  8999999999999999999999999999999999999998 5999999999887


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ++.     .++..+...+-.+..+     |+=.++.+|+.||.|..=|+.+.
T Consensus       246 rCl-----~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 RCL-----ATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             cee-----eeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCc
Confidence            744     4444444434444444     77789999999999999888774

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=3.8e-24  Score=224.81  Aligned_cols=239  Identities=20%  Similarity=0.291  Sum_probs=200.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.+.|+.+  +|..-+.+|++|+.|.+++|||..+|++..++.+|.+.+.++...                         
T Consensus       248 H~g~V~~l--~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-------------------------  300 (537)
T KOG0274|consen  248 HFGGVWGL--AFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-------------------------  300 (537)
T ss_pred             CCCCceeE--EEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence            56788766  888878899999999999999999999999999887655432222                         


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..++.|+.|.+|++|++.++.++..+ .+|.++|.++..+  +..+++|+.|++|++||+.+++++.++.+|...
T Consensus       301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR  373 (537)
T ss_pred             ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence                446778899999999999999999666 5699999999997  779999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      |+++.+.+. ..+++|+  ++|++||+++. +++..+.+|..-+..+.+  .+++|++++ .|++|++||..+++..   
T Consensus       374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~-aD~~Ik~WD~~~~~~~---  446 (537)
T KOG0274|consen  374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS-ADGTIKLWDAEEGECL---  446 (537)
T ss_pred             EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc-ccccEEEeecccCcee---
Confidence            999988765 8888888  89999999999 999999999999976655  467888887 7999999999998744   


Q ss_pred             eeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                        ..+.. +...+..+.+       ....+++++.||.+++||+++++..+..
T Consensus       447 --~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  447 --RTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             --eeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence              44444 3333344433       2378999999999999999999887644

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.3e-24  Score=195.99  Aligned_cols=242  Identities=19%  Similarity=0.263  Sum_probs=195.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|++++|    +|.|+|+||.|-+|+|||..+...+..+..|.+.++++.|.++..                     
T Consensus        42 H~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S---------------------   96 (362)
T KOG0294|consen   42 HAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS---------------------   96 (362)
T ss_pred             cccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------------
Confidence            5677766633    589999999999999999999999998888888888777777611                     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          .+.|++|+.||.|.+|+.....++..+ ++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+.-...+- ...
T Consensus        97 ----~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~  170 (362)
T KOG0294|consen   97 ----KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK  170 (362)
T ss_pred             ----hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence                236899999999999999999888776 68999999999999999999999999999999999987666553 233


Q ss_pred             eeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234          162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      .+.+.|+|.|.+++.+. ..|-+|.+.+.+....+.. +..+.++.|-. +..+++++ .|+.|.+||.+.....    .
T Consensus       171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~  243 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----T  243 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEec-CCceEEEeccCCCccc----e
Confidence            46699999999888887 8999999988877666643 35567777765 44677887 6999999999885433    2


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      ....|...+-.+..+.    +|++.+|++++.||.|++||++...
T Consensus       244 ~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  244 EFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             eeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccccc
Confidence            3345666666666565    4889999999999999999987653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=4.9e-25  Score=196.77  Aligned_cols=242  Identities=15%  Similarity=0.240  Sum_probs=204.0

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .++|+  .++.+.+...-|+++.|=+-+|||.-+|..+++|. |..-|..+.|+.+                        
T Consensus        59 kgavw--~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------  111 (334)
T KOG0278|consen   59 KGAVW--SATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------  111 (334)
T ss_pred             Cccee--eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence            45674  44888888888999999999999999999999885 5555555556555                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                         .++|++|+.+.-++|||++..+....-..+|++.|..+-|....+.+++++.|++||+||.+++..++++. ...+|
T Consensus       112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V  187 (334)
T KOG0278|consen  112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV  187 (334)
T ss_pred             ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence               77899999999999999998765545557899999999999988999999999999999999999999988 46789


Q ss_pred             eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      +++.+++||+++.++. +.|.+||.++..+++.+. -...|.+...+|+...+++++ +|..++.||..++..+.   .+
T Consensus       188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~---~~  262 (334)
T KOG0278|consen  188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIG---SY  262 (334)
T ss_pred             cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCceee---ec
Confidence            9999999999999998 899999999998888876 456688999999998888776 89999999999998662   22


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      . ..+...+.++.|+     |||..-++||+||+|++|....++.
T Consensus       263 n-kgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 N-KGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             c-cCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence            2 3444556788898     9999999999999999998665543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=3.7e-24  Score=216.06  Aligned_cols=338  Identities=13%  Similarity=0.109  Sum_probs=235.5

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---EeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|.|+|..++|.+...|..+.|||++.-..+.   .+--|...++++.--+-   .-......             ..
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~---nv~~~~~a-------------cl  390 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC---NVHSPTAA-------------CL  390 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc---cccCcccc-------------cC
Confidence            3688999999999999999999999998654322   22223332222111110   00000000             11


Q ss_pred             CCcEEEEEECCCcEEEEEcCCC---eEEEE-ec--------------------------------cCCCCCeEEEEEecC
Q 007234           85 GSSLLVLGTGGGDVLALAVSAG---QLKWR-LS--------------------------------DCHPGGVSAISFATH  128 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~---~~~~~-~~--------------------------------~~h~~~V~~l~~sp~  128 (612)
                      ....+++++.||+|++||+..+   +..++ ++                                -.....+.+++.+|+
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence            2456899999999999999762   22111 00                                012346899999999


Q ss_pred             CCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC---CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCE
Q 007234          129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAV  202 (612)
Q Consensus       129 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp---dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v  202 (612)
                      |++|++|..-|++++||+..-+....+.+|+..|.|+.|+.   ..++||+++  ..|++||+... .++.++.+|...|
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99999999999999999999998889999999999999985   357888888  68999998754 5678899999999


Q ss_pred             EEEEEeeCC--cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       203 ~~l~~sp~~--~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      +++.|.-.|  ..++++| .|+.|. |+.......  ..++...++. . .-......+++|..+++++++.|..|+|||
T Consensus       551 TsvKFa~~gln~~MiscG-ADksim-Fr~~qk~~~--g~~f~r~t~t-~-~ktTlYDm~Vdp~~k~v~t~cQDrnirif~  624 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCG-ADKSIM-FRVNQKASS--GRLFPRHTQT-L-SKTTLYDMAVDPTSKLVVTVCQDRNIRIFD  624 (1080)
T ss_pred             eEEEEeecCCceEEEecc-Cchhhh-eehhccccC--ceeccccccc-c-ccceEEEeeeCCCcceEEEEecccceEEEe
Confidence            999999877  6788887 688765 443321100  0112211111 1 111111222348999999999999999999


Q ss_pred             CCCcceecccCCceeEeeccc--ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEec
Q 007234          281 GQNIEELRNTKATKILSSSED--VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (612)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S  358 (612)
                      ++++++.+.++..+.......  ...|.+.    ++++...|..+-.+|        -....+..++.+|...|+.+-|+
T Consensus       625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~~D--------f~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  625 IESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCFVD--------FVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             ccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEEEE--------eccchhhhhhcCcchheeeeeec
Confidence            999999988876644322211  1234555    777777766444333        22334555788999999999999


Q ss_pred             CCCceEeccccceeeecceeee
Q 007234          359 QDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      +|-+.| +|.+.|+-|.+|.+.
T Consensus       693 nDCkHl-ISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  693 NDCKHL-ISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ccchhh-eeecCCceEEEEECc
Confidence            999999 999999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.1e-23  Score=223.70  Aligned_cols=286  Identities=16%  Similarity=0.120  Sum_probs=215.1

Q ss_pred             eEEEEcCCCCEEEEEe--CCCcEEEEECCCC------------cEEEEeeccCCccccccccccccccccccceeEEEee
Q 007234            9 ILTSFSPALDYFAICS--GDARIKIWDTLKG------------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (612)
Q Consensus         9 l~~~fspdg~~las~s--~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~   74 (612)
                      .+++.+|||..+|+|+  .||.++||+.+.-            +.+.....|.+.+.|..|+++                
T Consensus        17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d----------------   80 (942)
T KOG0973|consen   17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD----------------   80 (942)
T ss_pred             EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC----------------
Confidence            4559999999999999  7999999987521            122334445555554444444                


Q ss_pred             ecccccccccCCcEEEEEECCCcEEEEEcCC-------C-----------eEEEEeccCCCCCeEEEEEecCCCEEEEEe
Q 007234           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-------G-----------QLKWRLSDCHPGGVSAISFATHGSCIYSAG  136 (612)
Q Consensus        75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-------~-----------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s  136 (612)
                                 +.++|+|+.|+.|.||.-..       |           ++. ..+.+|.+.|.+++|+|++.+|+++|
T Consensus        81 -----------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   81 -----------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             -----------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEec
Confidence                       89999999999999999872       0           123 33468999999999999999999999


Q ss_pred             cCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC------CCEEEEEEe
Q 007234          137 ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS  208 (612)
Q Consensus       137 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~------~~v~~l~~s  208 (612)
                      .|++|.+||..+.+.+..+++|...|-.+.|.|-|+++|+-+  ++|++|++.+....+.+.++-      .....+.||
T Consensus       149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            999999999999999999999999999999999999999988  899999987766666665443      357789999


Q ss_pred             eCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc------------EEEEEecC
Q 007234          209 DNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISET  273 (612)
Q Consensus       209 p~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~t~s~d  273 (612)
                      |||.+|++.-.-.   .++.|.+-.+.+.     -..+-.|...+.++.|.+..+.....            .+|+|+.|
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk~-----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWKV-----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCcee-----eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            9999999864322   2577776555442     23333445577888888654432222            67888999


Q ss_pred             CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (612)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (612)
                      +.|.||.....+.+.                           .+..                           .-...|.
T Consensus       304 rSlSVW~T~~~RPl~---------------------------vi~~---------------------------lf~~SI~  329 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLF---------------------------VIHN---------------------------LFNKSIV  329 (942)
T ss_pred             ccEEEEecCCCCchh---------------------------hhhh---------------------------hhcCcee
Confidence            999999754333321                           1110                           0112688


Q ss_pred             EEEecCCCceEeccccceeeecceeeecc
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                      .++|||||..| +.+|.|+++.+-.++++
T Consensus       330 DmsWspdG~~L-facS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  330 DMSWSPDGFSL-FACSLDGTVALIHFEEK  357 (942)
T ss_pred             eeeEcCCCCeE-EEEecCCeEEEEEcchH
Confidence            99999999999 99999999999887543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.3e-24  Score=203.25  Aligned_cols=242  Identities=16%  Similarity=0.288  Sum_probs=195.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++.+|  ..+.||||.+||++|+.|..+++||+.+|.+...+..                + +....++++|.|.     
T Consensus       268 h~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD-----  323 (519)
T KOG0293|consen  268 HSQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD-----  323 (519)
T ss_pred             ccCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC-----
Confidence            45678  4559999999999999999999999999999887742                2 3456678889887     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..+++|+.|+.+..||+..+.. ..........|.+++.++||+++++.+.|..|++++.++......+. ...+
T Consensus       324 ----g~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~  397 (519)
T KOG0293|consen  324 ----GFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQP  397 (519)
T ss_pred             ----CceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCc
Confidence                67799999999999999976543 23322234569999999999999999999999999987665544443 4568


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC--EEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~--v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      |++.+.|.||+++++.-  ..+++||++..+.++++.||...  +-.-+|-. +..++++|+ +|+.|+||+..+++.. 
T Consensus       398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll-  475 (519)
T KOG0293|consen  398 ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLL-  475 (519)
T ss_pred             eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCcee-
Confidence            99999999999998876  89999999999999999999865  33335654 345666665 8999999999998844 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                          ..+.++...+.+++++|    .+..++|+++.||+|+||....
T Consensus       476 ----~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  476 ----AVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ----EeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCCc
Confidence                56778888889999984    4668899999999999997653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=4.6e-23  Score=186.09  Aligned_cols=200  Identities=14%  Similarity=0.210  Sum_probs=174.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |..|++.+  .|+.+|.+|.+|+.|.+..||-..+|+.+-++.+|.+.|.++....+                       
T Consensus         9 HERplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-----------------------   63 (327)
T KOG0643|consen    9 HERPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-----------------------   63 (327)
T ss_pred             CccccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-----------------------
Confidence            35688777  99999999999999999999999999999999999988775555444                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-----CCcEEEEECC-------CC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPL-------TG  149 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~v~iwd~~-------~~  149 (612)
                          ...+++|+.|.++++||+++|+++..+.  ...+|..+.|+++|++++.+..     .+.|.++|++       ..
T Consensus        64 ----s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   64 ----SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             ----cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence                6789999999999999999999998874  5689999999999988776643     4679999998       45


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      ++...+..+...++.+-|.|-++.|++|.  |.|..||.++|+ .+..-..|...|+.|.++||..++++++ .|.+-++
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl  216 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKL  216 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCcccee
Confidence            67888888889999999999999999998  999999999985 4566678999999999999999999997 7999999


Q ss_pred             EEcCCCc
Q 007234          227 WRTDGVK  233 (612)
Q Consensus       227 wd~~~~~  233 (612)
                      ||..+-.
T Consensus       217 ~D~~tl~  223 (327)
T KOG0643|consen  217 VDVRTLE  223 (327)
T ss_pred             eecccee
Confidence            9987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=178.14  Aligned_cols=246  Identities=20%  Similarity=0.283  Sum_probs=193.0

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----EEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      .+.|  .|.+|||+|+++|+|++|.+|++.-.....+     -.+|.-|.+.+...+|-.+                  .
T Consensus        89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~  148 (350)
T KOG0641|consen   89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P  148 (350)
T ss_pred             CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence            4567  4669999999999999999999976543332     2345666666666555544                  1


Q ss_pred             cccccccCCcEEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                      ..     ++.++++++ .|.+|++-|..+|+....+ .+|++.|.++. +-+|-.+++|+.|.+|++||++-..++.++.
T Consensus       149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~  221 (350)
T KOG0641|consen  149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD  221 (350)
T ss_pred             Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence            10     144555443 4556888899999988776 68999999883 4468899999999999999999988888764


Q ss_pred             cC-------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          157 AS-------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       157 ~~-------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      ..       ...|.++++.|.|++|++|.  ....+||++.++.++.+..|...|.++.|+|...|+++++ .|..|++=
T Consensus       222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt  300 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT  300 (350)
T ss_pred             CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence            31       24799999999999999998  7899999999999999999999999999999999999997 79999999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      |+...-......+...+|....+.+-+.      |..--+++.+.|+++.+|-+.
T Consensus       301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEeccC
Confidence            9986533323345556677888877655      666778999999999999753

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=2.7e-23  Score=196.21  Aligned_cols=238  Identities=16%  Similarity=0.221  Sum_probs=187.6

Q ss_pred             CCcccceeEEEEc-CCC--CEEEEEeCCCcEEEEECCCCcEE----EEeeccCCccccccccccccccccccceeEEEee
Q 007234            2 GSSNIRDILTSFS-PAL--DYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (612)
Q Consensus         2 ~s~~V~~l~~~fs-pdg--~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~   74 (612)
                      ++++|+++  ++- ++.  ..|++++.|.++++|.++.++..    +.-+||...|.++....+                
T Consensus       143 ht~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----------------  204 (423)
T KOG0313|consen  143 HTGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----------------  204 (423)
T ss_pred             CCcceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----------------
Confidence            45677654  433 332  36999999999999998877643    233466666665555544                


Q ss_pred             ecccccccccCCcEEEEEECCCcEEEEEcCCC-------------------------eEEEEeccCCCCCeEEEEEecCC
Q 007234           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-------------------------QLKWRLSDCHPGGVSAISFATHG  129 (612)
Q Consensus        75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~-------------------------~~~~~~~~~h~~~V~~l~~sp~~  129 (612)
                                 +..+++|+.|.+|.+|+..+.                         ..+ ..+.+|..+|.++.|++ .
T Consensus       205 -----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~GHt~~Vs~V~w~d-~  271 (423)
T KOG0313|consen  205 -----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-VTLEGHTEPVSSVVWSD-A  271 (423)
T ss_pred             -----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-EEecccccceeeEEEcC-C
Confidence                       889999999999999993221                         112 23479999999999998 5


Q ss_pred             CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe---eEEEEecCCCCEEE
Q 007234          130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRF  204 (612)
Q Consensus       130 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~v~~  204 (612)
                      ..++++|.|.+|+.||+.+++.+.++.+ ...+.|+.++|..++|++|+  ..|++||.+++.   ...+|.||.+.|.+
T Consensus       272 ~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss  350 (423)
T KOG0313|consen  272 TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS  350 (423)
T ss_pred             CceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence            6799999999999999999999988875 45789999999999999998  799999999763   46788999999999


Q ss_pred             EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      +.|+|...+.+.+++.|+++++||+++.+..    ++.+..+..-+-++.|      .++..+++|+.|++|+++..
T Consensus       351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~p----lydI~~h~DKvl~vdW------~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP----LYDIAGHNDKVLSVDW------NEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             eecCCCCceEEEEEecCCeEEEEEeccCCCc----ceeeccCCceEEEEec------cCCceEEeccCcceEEEecc
Confidence            9999988876666668999999999987633    4555555555556666      46789999999999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.2e-23  Score=203.39  Aligned_cols=299  Identities=15%  Similarity=0.147  Sum_probs=217.3

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      -+|  +||+++||+++..+++.||+|.=|++.+|+....+-.. ..+....                             
T Consensus       143 ~s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~-~ev~k~~-----------------------------  190 (479)
T KOG0299|consen  143 LSV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIER-DEVLKSH-----------------------------  190 (479)
T ss_pred             Ccc--eEEEeeccccceeecCCCcceeeeehhcCccccccccc-chhhhhc-----------------------------
Confidence            345  67899999999999999999999999999865322100 0000000                             


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                                            +... +.. .+|...+.+++.++||++|++|+.|..|.+||.++.+.++.+++|.+.|
T Consensus       191 ----------------------~~~~-k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V  247 (479)
T KOG0299|consen  191 ----------------------GNPL-KESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAV  247 (479)
T ss_pred             ----------------------cCCC-CcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccce
Confidence                                  0000 111 3699999999999999999999999999999999999999999999999


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      .+++|-.....+++++  .+|++|+++....+.++.||...|.+|....-++.+-+++ .|+++++|++......     
T Consensus       248 ~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesql-----  321 (479)
T KOG0299|consen  248 SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQL-----  321 (479)
T ss_pred             eeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEecccccee-----
Confidence            9999987777777776  8999999999999999999999999998888777665555 7999999999554322     


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE-----------eecccccCCCCcc
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL-----------SSSEDVNSKSQKS  309 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~  309 (612)
                       .+..+...+.+++|-      +..++++|+.+|.|.+|++.+.+.+.........           +.......|... 
T Consensus       322 -ifrg~~~sidcv~~I------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-  393 (479)
T KOG0299|consen  322 -IFRGGEGSIDCVAFI------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-  393 (479)
T ss_pred             -eeeCCCCCeeeEEEe------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-
Confidence             233456677888884      5678999999999999999888776543322111           111111233433 


Q ss_pred             cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                         .+++|+.+|++++|.    +..|......+..+. -.++|.+++|+++|+++++..+.....--|-.
T Consensus       394 ---L~asGS~~G~vrLW~----i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  394 ---LLASGSWSGCVRLWK----IEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             ---eEEecCCCCceEEEE----ecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence               778888888777764    222222222333444 34589999999999988566666655555543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=3.3e-23  Score=220.09  Aligned_cols=244  Identities=18%  Similarity=0.198  Sum_probs=192.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-------C-----------cEEEEeeccCCccccccccccccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------G-----------QVQTEFADIASTETTSLYGNRLEREH   63 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-------~-----------~~~~~~~~~~~~~~~~~~s~~~~~~~   63 (612)
                      +.+.|.  |+.|||||++||+||.|+.|.||+...       |           ++...+.+|.+.|..+.|+++     
T Consensus        68 h~~sv~--CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-----  140 (942)
T KOG0973|consen   68 HDGSVN--CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-----  140 (942)
T ss_pred             ccCcee--EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-----
Confidence            457784  559999999999999999999998763       1           144555556555555555444     


Q ss_pred             cccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEE
Q 007234           64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE  143 (612)
Q Consensus        64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~i  143 (612)
                                            +.++++++.|+.|.|||..+.+.+..+ .+|.+.|-++.|.|-|++|++-+.|++|++
T Consensus       141 ----------------------~~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikv  197 (942)
T KOG0973|consen  141 ----------------------DSLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKV  197 (942)
T ss_pred             ----------------------ccEEEEecccceEEEEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEE
Confidence                                  889999999999999999999777555 789999999999999999999999999999


Q ss_pred             EECCCCceeEEEecCC------CCeeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC-
Q 007234          144 IDPLTGSLLGKFRAST------KGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-  210 (612)
Q Consensus       144 wd~~~~~~~~~~~~~~------~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-  210 (612)
                      |++.+....+.+..+.      ..+..+.|+|||++|++..      .++.|.+-.+.+.-..|-||.+++.++.|+|. 
T Consensus       198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence            9988877777766543      2578899999999999876      38999998888888899999999999999972 


Q ss_pred             -----C---------cE-EEEEEcCCCeEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234          211 -----G---------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       211 -----~---------~~-l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                           .         .| ++++|+.|++|.||.....++.     +... -....+.-++|+     |||..|+++|.||
T Consensus       278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-----~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DG  347 (942)
T KOG0973|consen  278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-----FVIHNLFNKSIVDMSWS-----PDGFSLFACSLDG  347 (942)
T ss_pred             hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch-----hhhhhhhcCceeeeeEc-----CCCCeEEEEecCC
Confidence                 1         11 5555568999999998665543     2221 122233445565     9999999999999


Q ss_pred             cEEEEECCCcc
Q 007234          275 VCYIWYGQNIE  285 (612)
Q Consensus       275 ~i~iwd~~~~~  285 (612)
                      +|.++.++..+
T Consensus       348 tV~~i~Fee~E  358 (942)
T KOG0973|consen  348 TVALIHFEEKE  358 (942)
T ss_pred             eEEEEEcchHH
Confidence            99999876543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=178.73  Aligned_cols=297  Identities=15%  Similarity=0.188  Sum_probs=219.7

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +++||++  +|.|.|.+.|.|++..+++|--.-.-...+                   .+|......             
T Consensus        32 sqairav--~fhp~g~lyavgsnskt~ric~yp~l~~~r-------------------~~hea~~~p-------------   77 (350)
T KOG0641|consen   32 SQAIRAV--AFHPAGGLYAVGSNSKTFRICAYPALIDLR-------------------HAHEAAKQP-------------   77 (350)
T ss_pred             hhheeeE--EecCCCceEEeccCCceEEEEccccccCcc-------------------cccccccCC-------------
Confidence            5688877  999999999999999999886432111000                   011110000             


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-----eEEEec
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRA  157 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-----~~~~~~  157 (612)
                                             ...+.+-.+.|.+.|.|.+|+|+|+++++|+.|.+|++..++...+     -..|.-
T Consensus        78 -----------------------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm  134 (350)
T KOG0641|consen   78 -----------------------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM  134 (350)
T ss_pred             -----------------------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee
Confidence                                   0011122256899999999999999999999999999987654322     235667


Q ss_pred             CCCCeeEEEECC----CCCEEEEeC-C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          158 STKGISCMAVSS----DGKMLATAA-G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       158 ~~~~v~~l~~sp----dg~~l~~~~-g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      |.+.|..++|-.    .|.+|++++ |  .|++-|..+|+.+..+.||.+.|.++ ++-+|..+++++ .|.+|++||++
T Consensus       135 hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgs-qdktirfwdlr  212 (350)
T KOG0641|consen  135 HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGS-QDKTIRFWDLR  212 (350)
T ss_pred             cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccC-CCceEEEEeee
Confidence            889999999964    356788877 4  77888999999999999999999886 344577777775 89999999998


Q ss_pred             CCccccceeeEeec-------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccccc
Q 007234          231 GVKKQSASCVLAME-------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (612)
Q Consensus       231 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (612)
                      -....     ..+.       -....+..++..     |.|++|++|-.|....+||++.++.++.+.|....+.+.. |
T Consensus       213 v~~~v-----~~l~~~~~~~glessavaav~vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-f  281 (350)
T KOG0641|consen  213 VNSCV-----NTLDNDFHDGGLESSAVAAVAVD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-F  281 (350)
T ss_pred             cccee-----eeccCcccCCCcccceeEEEEEC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-e
Confidence            76532     2222       123455666676     9999999999999999999999999999999887777766 8


Q ss_pred             CCCCcccchhhhcccccceecCCCceEEEEeCCccCc-eEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKP-SFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~-~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +|...    ++++++.|..++.-|     ..|..... ..-.+..|...++.+.|.|..--+ +|.|.|++..+|..
T Consensus       282 sp~a~----yllt~syd~~ikltd-----lqgdla~el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~  348 (350)
T KOG0641|consen  282 SPGAH----YLLTCSYDMKIKLTD-----LQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL  348 (350)
T ss_pred             CCCce----EEEEecccceEEEee-----cccchhhcCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence            88877    899999887666544     22333221 122345688899999999988777 89999999999965

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=5e-22  Score=209.51  Aligned_cols=179  Identities=10%  Similarity=0.109  Sum_probs=142.7

Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCc--------eeEEEecCCCCe
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI  162 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~--------~~~~~~~~~~~v  162 (612)
                      |+..|.|.+|++.....+..+ .+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.        ++..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            455677999998877666555 689999999999996 7899999999999999997642        345678899999


Q ss_pred             eEEEECCCCCEE-EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       163 ~~l~~spdg~~l-~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      .+++|+|++..+ ++++  ++|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||++++...    
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i----  202 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA----  202 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE----
Confidence            999999998765 5665  899999999998877776 667899999999999998887 7999999999987643    


Q ss_pred             eEeec-CCcee----EEeEEecCCccCCCCcEEEEEecCC----cEEEEECCC
Q 007234          240 VLAME-HPAVF----MDCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN  283 (612)
Q Consensus       240 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~l~t~s~dg----~i~iwd~~~  283 (612)
                       ..+. |....    +....|+     +++.+|++++.|+    +|++||+++
T Consensus       203 -~tl~gH~g~~~s~~v~~~~fs-----~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        203 -SSFHIHDGGKNTKNIWIDGLG-----GDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             -EEEecccCCceeEEEEeeeEc-----CCCCEEEEEEcCCCCccEEEEEECCC
Confidence             2333 33221    1122233     7888999988774    799999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=5.2e-24  Score=199.76  Aligned_cols=261  Identities=16%  Similarity=0.170  Sum_probs=205.9

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      ..+++|+.||.|++||+.+..+...+ .+|.+.|.++++..  ..+++++.|.+|+.|-+.. .+++++.+ ...+..+.
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gId  154 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGID  154 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccc
Confidence            56899999999999999999998777 68999999999976  5689999999999999764 57777764 45677888


Q ss_pred             ECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       167 ~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      -+..+..+++++..|.|||.+-..++..+.--...|.++.|+|....++.++..|+.|.+||++.+.+.. ..+..+   
T Consensus       155 h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~m---  230 (433)
T KOG0268|consen  155 HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTM---  230 (433)
T ss_pred             cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeec---
Confidence            8877888999889999999999999999988888899999999877555555469999999999987652 222222   


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc-eecccCCceeEeecccccCCCCcccchhhhcccccceecC
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~  325 (612)
                        -...++|+     |++--++++++|..++.||++..+ .+..++.....+...+ |+|.|+    -+++|++|..+++
T Consensus       231 --RTN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~----EfvsgsyDksIRI  298 (433)
T KOG0268|consen  231 --RTNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQ----EFVSGSYDKSIRI  298 (433)
T ss_pred             --cccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cCCCcc----hhccccccceEEE
Confidence              22446676     888889999999999999987653 4455555555555555 899999    8999999988877


Q ss_pred             CCceEEEEeCCccCceEEEeeccC---CCeEEEEecCCCceEeccccceeeecceee
Q 007234          326 ASVHTFVAYGLLLKPSFQKILVNS---GEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~h~---~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +.    +..|.+ .     -..|+   ..|.++.||.|.+|+ +|||+|+.+|+|..
T Consensus       299 f~----~~~~~S-R-----diYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  299 FP----VNHGHS-R-----DIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA  344 (433)
T ss_pred             ee----cCCCcc-h-----hhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeec
Confidence            54    111111 0     11222   358999999999999 99999999999975

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6.8e-23  Score=188.84  Aligned_cols=276  Identities=12%  Similarity=0.181  Sum_probs=216.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      +-......+.+++.|.+.+||.+++|.|+..+.+|.+.++++.|.+.                           +.++++
T Consensus       155 aa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~lT  207 (481)
T KOG0300|consen  155 AADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLLT  207 (481)
T ss_pred             hhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEEE
Confidence            44444457889999999999999999999999999999998888876                           788899


Q ss_pred             EECCCcEEEEE------cCCC----------------------------------eEEEEeccCCCCCeEEEEEecCCCE
Q 007234           92 GTGGGDVLALA------VSAG----------------------------------QLKWRLSDCHPGGVSAISFATHGSC  131 (612)
Q Consensus        92 gs~~g~I~vwd------~~~~----------------------------------~~~~~~~~~h~~~V~~l~~sp~~~~  131 (612)
                      ++.|++..||.      +...                                  ..+.. +.+|.+.|.+..|-..|+.
T Consensus       208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q  286 (481)
T KOG0300|consen  208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQ  286 (481)
T ss_pred             ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcce
Confidence            99999988886      2110                                  01112 2579999999999999999


Q ss_pred             EEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEe
Q 007234          132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFS  208 (612)
Q Consensus       132 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s  208 (612)
                      +++++.|.+..+||+++|+.+..+.+|....+.++-+|..+++++++  .+.++||++.. ..+..|.||...|++..|.
T Consensus       287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~  366 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN  366 (481)
T ss_pred             eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence            99999999999999999999999999999999999999999999998  79999999854 4578899999999999999


Q ss_pred             eCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       209 p~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .+.+ +++++ +|++|++||+++....    +.++.... .+.-+..+     ..+..++.-..+..|++||+.....-+
T Consensus       367 ~dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS-~~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  367 TDDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDS-PANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             cCCc-eeecC-CCceEEEeeeccccCc----ceeeecCC-ccceeEee-----cCCceEEeccCCceEEEEecCCCcccc
Confidence            8775 67776 7999999999886533    23332222 22334443     445566666667799999986443321


Q ss_pred             ccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCC--ceEec
Q 007234          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLPM  366 (612)
Q Consensus       289 ~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg--~~l~~  366 (612)
                                     .|..                                    .-++|...|.|++|..+-  .-| +
T Consensus       435 ---------------lPrt------------------------------------sRqgHrRMV~c~AW~eehp~cnL-f  462 (481)
T KOG0300|consen  435 ---------------LPRT------------------------------------SRQGHRRMVTCCAWLEEHPACNL-F  462 (481)
T ss_pred             ---------------CCcc------------------------------------cccccceeeeeeeccccCccccc-c
Confidence                           0100                                    224677789999998664  456 8


Q ss_pred             cccceeeecceee
Q 007234          367 SQSLLKSKRGRYV  379 (612)
Q Consensus       367 s~s~d~~~~~w~~  379 (612)
                      +++.|..+.-|++
T Consensus       463 tcGFDR~v~gW~i  475 (481)
T KOG0300|consen  463 TCGFDRMVAGWKI  475 (481)
T ss_pred             cccccceeeeeEe
Confidence            9999999999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.9e-23  Score=213.60  Aligned_cols=204  Identities=17%  Similarity=0.183  Sum_probs=158.5

Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCe
Q 007234          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK  190 (612)
Q Consensus       114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~  190 (612)
                      .||.+.|.++.|+.++ +|+++|.|.+|++|++...+++..|. |...|+|++|+| |.+++++|+  |.|+||++...+
T Consensus       366 ~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  366 KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            4899999999999754 89999999999999999999999998 899999999999 889999999  999999998887


Q ss_pred             eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec---CCceeEEeEEecCCccCCCCcEE
Q 007234          191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME---HPAVFMDCRCIDNGGVDDAGLYV  267 (612)
Q Consensus       191 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l  267 (612)
                      .+.-...+ .-|++++|.|||++.+.|+ .+|.+++|+....+......+....   ....-++.+.|.+    .+...|
T Consensus       444 Vv~W~Dl~-~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p----~~~~~v  517 (712)
T KOG0283|consen  444 VVDWNDLR-DLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFP----GDPDEV  517 (712)
T ss_pred             eEeehhhh-hhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecC----CCCCeE
Confidence            76655444 7899999999999999988 6999999999887654211111110   1112445555542    233478


Q ss_pred             EEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec
Q 007234          268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV  347 (612)
Q Consensus       268 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~  347 (612)
                      ++.+.|..|+|||.++.+.+..+++...                                                    
T Consensus       518 LVTSnDSrIRI~d~~~~~lv~KfKG~~n----------------------------------------------------  545 (712)
T KOG0283|consen  518 LVTSNDSRIRIYDGRDKDLVHKFKGFRN----------------------------------------------------  545 (712)
T ss_pred             EEecCCCceEEEeccchhhhhhhccccc----------------------------------------------------
Confidence            8889999999999877666543332100                                                    


Q ss_pred             cCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       348 h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                       ........|+.||+++ +++|+|..+.+|+.
T Consensus       546 -~~SQ~~Asfs~Dgk~I-Vs~seDs~VYiW~~  575 (712)
T KOG0283|consen  546 -TSSQISASFSSDGKHI-VSASEDSWVYIWKN  575 (712)
T ss_pred             -CCcceeeeEccCCCEE-EEeecCceEEEEeC
Confidence             0023455689999999 99999999999986

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=2.4e-23  Score=198.53  Aligned_cols=233  Identities=16%  Similarity=0.217  Sum_probs=197.4

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ++|..+  .|.+++.++.+++.|+.+++|++.+++...++.+|.+.+++.-|...                         
T Consensus       220 g~it~~--d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~-------------------------  272 (459)
T KOG0288|consen  220 GNITSI--DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS-------------------------  272 (459)
T ss_pred             CCccee--eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-------------------------
Confidence            568666  99999999999999999999999999999999999988876666554                         


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                        ...+++|+.|.+|++||+..+.|..+++.  .+.+.++..+  ...+++|-.|++|++||.++..+......+. .|+
T Consensus       273 --~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vt  345 (459)
T KOG0288|consen  273 --HSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVT  345 (459)
T ss_pred             --ccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-cee
Confidence              34489999999999999999999877764  3567777776  4568899999999999999999999988655 899


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC----CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ++..+++|..+.+.+  .++.+.|+++.+....+...    ....+.+.|||++.|+++|+ .||.|+||++.+++..  
T Consensus       346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE--  422 (459)
T KOG0288|consen  346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE--  422 (459)
T ss_pred             eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE--
Confidence            999999999999888  89999999999887776532    23478899999999999987 6999999999999865  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw  279 (612)
                       .+....+....+.++.|+     |.|..+++++.++.+.+|
T Consensus       423 -~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  423 -KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence             333434444467788887     999999999999999999

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=4.6e-22  Score=182.71  Aligned_cols=246  Identities=15%  Similarity=0.192  Sum_probs=175.4

Q ss_pred             cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEE-EeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQT-EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         4 ~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~-~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ..|..|  +||| ...+++.+|.||+||+|+++. |..+. ....|.+++.+++|+.+                      
T Consensus        28 DsIS~l--~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd----------------------   83 (347)
T KOG0647|consen   28 DSISAL--AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD----------------------   83 (347)
T ss_pred             cchhee--EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC----------------------
Confidence            356556  9999 556777889999999999986 34332 22334444444444444                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC--EEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                           +..+++|+.|+.+++||+.+++.. ++ ..|.++|..+.|-+...  .|+|||.|++|+.||++...++.++.- 
T Consensus        84 -----gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-  155 (347)
T KOG0647|consen   84 -----GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-  155 (347)
T ss_pred             -----CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-
Confidence                 788999999999999999999765 33 56999999999987655  699999999999999999999988874 


Q ss_pred             CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEE-E-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc-
Q 007234          159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-F-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-  235 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~-~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~-  235 (612)
                      .+.++++..-..--.++++...|.+|+++++....+ . ..-.-.+.+++..+|....+.++ -.|.+.+..++.+... 
T Consensus       156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~  234 (347)
T KOG0647|consen  156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKD  234 (347)
T ss_pred             cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccC
Confidence            456777766543333333448999999987643211 1 11233578898888887778777 6899999998876332 


Q ss_pred             --cceeeEee---cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          236 --SASCVLAM---EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       236 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                        ...|....   ......+..++|.     |.-..|++++.||+..+||-+....+
T Consensus       235 nFtFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~kL  286 (347)
T KOG0647|consen  235 NFTFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTKL  286 (347)
T ss_pred             ceeEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhhh
Confidence              11222211   1113455666776     88899999999999999996544433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2e-22  Score=195.35  Aligned_cols=281  Identities=17%  Similarity=0.183  Sum_probs=209.4

Q ss_pred             EEeCC-CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc-EE
Q 007234           22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD-VL   99 (612)
Q Consensus        22 s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~-I~   99 (612)
                      +++.| .++.+||+++|....+|++.....           ++   ..+.             .++.+++++..... +.
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~---sl~~-------------l~~~yllsaq~~rp~l~   64 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AA---SLTA-------------LNNEYLLSAQLKRPLLH   64 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCccccc-----------ch---hhhh-------------hchhheeeecccCcccc
Confidence            33444 459999999999999887531100           00   0000             01456666665544 89


Q ss_pred             EEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-
Q 007234          100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-  178 (612)
Q Consensus       100 vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-  178 (612)
                      +|.+.......+. .--.++|.++.-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+-||.++++|+ 
T Consensus        65 vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   65 VWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             ccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence            9998765544322 22467899999999999888888999999999999999999999999999999999999999999 


Q ss_pred             -CeEEEEEcC---------CCeeEEEEecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       179 -g~i~lwd~~---------~~~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                       |.|.+|++.         +-+++..|..|.-+|+.+...+.  ..++++++ .|+++++||+..+...     .+...+
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~fp  217 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTITFP  217 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEecC
Confidence             999999863         34678899999999999988764  35788887 7999999999999754     333223


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~  326 (612)
                       ..+.++..+     |.++.+++|+.+|.|.+.++......+.                +-+                  
T Consensus       218 -~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~----------------~v~------------------  257 (476)
T KOG0646|consen  218 -SSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSA----------------GVN------------------  257 (476)
T ss_pred             -CcceeEEEc-----ccccEEEecCCcceEEeeehhcCCcccc----------------ccc------------------
Confidence             344566666     8899999999999999987644321000                000                  


Q ss_pred             CceEEEEeCCccCceEEEeeccCC--CeEEEEecCCCceEeccccceeeecceeeecc
Q 007234          327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                           ...+..-...+..+.+|.+  .|+|+++|-||.+| +||+.|+.+++|++.++
T Consensus       258 -----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  258 -----QKGRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             -----ccccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecchH
Confidence                 0000111233446778888  89999999999999 99999999999999765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=7.7e-22  Score=183.02  Aligned_cols=241  Identities=13%  Similarity=0.173  Sum_probs=187.5

Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCe
Q 007234          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHK  190 (612)
Q Consensus       115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~  190 (612)
                      .....|.++.|+++|..+++++.|.++++||..++++++++..++.++..++|......++.++    .+|+..++.+.+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            3567899999999999999999999999999999999999998888999999987777777666    499999999999


Q ss_pred             eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE
Q 007234          191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (612)
Q Consensus       191 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~  270 (612)
                      .++-|.||...|.+++.+|-+..+++++ .|++|++||++..+.+     -.+.....  .+++|.     |+|-++|++
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S-~D~tvrLWDlR~~~cq-----g~l~~~~~--pi~AfD-----p~GLifA~~  158 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSS-LDKTVRLWDLRVKKCQ-----GLLNLSGR--PIAAFD-----PEGLIFALA  158 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecc-cCCeEEeeEecCCCCc-----eEEecCCC--cceeEC-----CCCcEEEEe
Confidence            9999999999999999999999999987 7999999999977644     22222222  345676     999999999


Q ss_pred             ecCCcEEEEECCCcce--ecccC---CceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEe
Q 007234          271 SETGVCYIWYGQNIEE--LRNTK---ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI  345 (612)
Q Consensus       271 s~dg~i~iwd~~~~~~--~~~~~---~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~  345 (612)
                      ...+.|++||++....  ...+.   +....+. ...|+++||    .|+.+...+.+++.|    ..+|.    ..+++
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK----~iLlsT~~s~~~~lD----Af~G~----~~~tf  225 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGK----SILLSTNASFIYLLD----AFDGT----VKSTF  225 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCC----EEEEEeCCCcEEEEE----ccCCc----EeeeE
Confidence            9888999999876532  11111   2233333 234899999    777776655443322    11222    34456


Q ss_pred             eccCCC---eEEEEecCCCceEeccccceeeecceeeecc
Q 007234          346 LVNSGE---DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       346 ~~h~~~---v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                      .++.+.   -...+|+|||+++ ++|+.|+++.+|++...
T Consensus       226 s~~~~~~~~~~~a~ftPds~Fv-l~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDSKFV-LSGSDDGTIHVWNLETG  264 (311)
T ss_pred             eeccCCCCcceeEEECCCCcEE-EEecCCCcEEEEEcCCC
Confidence            665543   3678899999999 99999999999998543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=5.1e-22  Score=200.86  Aligned_cols=233  Identities=20%  Similarity=0.300  Sum_probs=183.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |.++|+.+  ++.+ +..++++|.||++++|+-..++.+.  .+.++.+-+                 ...+++...+  
T Consensus        13 H~~DVr~v--~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i-----------------~~~i~y~e~~--   70 (745)
T KOG0301|consen   13 HKSDVRAV--AVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFI-----------------ANSICYAESD--   70 (745)
T ss_pred             Cccchhee--EecC-CeEEeecCCCCceeeeeccCcccccceecccCccee-----------------eccceecccc--
Confidence            56788777  5555 4488999999999999987666543  233332222                 2223333322  


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                            +..+++|+.|+.|.+|.+.+...+..+ .+|.+.|.+++...++. +++||.|.++++|-.  +++...+.+|.
T Consensus        71 ------~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~  140 (745)
T KOG0301|consen   71 ------KGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHT  140 (745)
T ss_pred             ------CcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcc
Confidence                  567999999999999999999998666 68999999999877775 999999999999975  77788899999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ..|++++.-|++ .+++|+  .+|++|.-  ++.+++|.||..-|..+++-|++. |++++ .||.|+.|++...     
T Consensus       141 asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge-----  210 (745)
T KOG0301|consen  141 ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE-----  210 (745)
T ss_pred             hheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc-----
Confidence            999999999998 666666  79999974  788999999999999999999864 67887 8999999999444     


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                       ++.....+...+-++...     .++..++++++|+++++|+..
T Consensus       211 -~l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  211 -VLLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -eeeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecC
Confidence             345555555555555544     778899999999999999865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.8e-23  Score=209.45  Aligned_cols=241  Identities=13%  Similarity=0.224  Sum_probs=182.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++..++-..++.++.. .++||.+..............           ........+..+.|....        .++|+
T Consensus        45 Is~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k-----------~kqn~~~S~~DVkW~~~~--------~NlIA  104 (839)
T KOG0269|consen   45 ISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFK-----------TKQNKFYSAADVKWGQLY--------SNLIA  104 (839)
T ss_pred             EeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecc-----------cccceeeehhhcccccch--------hhhhe
Confidence            3777888888888764 677876654322111100000           012223344567787554        78999


Q ss_pred             EEECCCcEEEEEcCC---CeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234           91 LGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      +++.+|.|.+||+..   ++.+ ..+..|+..++++.|++. ..+|++||.||+|++||++..+...++.+....|..++
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~  183 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK  183 (839)
T ss_pred             eecCCCcEEEEecCccccchhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence            999999999999987   3343 344679999999999984 45799999999999999999999999998888999999


Q ss_pred             ECC-CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          167 VSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       167 ~sp-dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      |+| .+..++++.  |.+++||++.. ++..++..|.++|.++.|+|++.+|++|| .|+.|+|||+.+.+...   ..+
T Consensus       184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~---~~t  259 (839)
T KOG0269|consen  184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP---KHT  259 (839)
T ss_pred             eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc---eeE
Confidence            998 566777776  99999999875 55788899999999999999999999998 89999999999876542   222


Q ss_pred             ecCCceeEEeEEecCCccCCCC-cEEEEEec--CCcEEEEECC
Q 007234          243 MEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ  282 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~--dg~i~iwd~~  282 (612)
                      + +....+..+.|.     |+. .+|++++.  |-.|+|||+.
T Consensus       260 I-nTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  260 I-NTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             E-eecceeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence            2 344556677776     543 56777765  7799999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.1e-21  Score=181.35  Aligned_cols=223  Identities=14%  Similarity=0.171  Sum_probs=177.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC--EEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                      +.++++|+.|.+|+|||+.....+..+. .|.+.|+++.|.+.-.  .|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence            7789999999999999999998887775 5999999999998664  799999999999999999999999999999999


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      .++.+|.|++.++.+  +.+++||+-+|+.-..+.- ....+.+.|+|.|.+++.++  ...|-+|.++..+..     .
T Consensus       132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~  203 (362)
T KOG0294|consen  132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R  203 (362)
T ss_pred             eeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence            999999999988766  8999999998876444432 22234489999999888876  456999999887533     2


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccc
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~  321 (612)
                      ....+.. +.++.|      -++..+++|..|+.|.+||..+...+.                                 
T Consensus       204 ~i~~~~r-~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~---------------------------------  243 (362)
T KOG0294|consen  204 EIENPKR-ILCATF------LDGSELLVGGDNEWISLKDTDSDTPLT---------------------------------  243 (362)
T ss_pred             hhhcccc-ceeeee------cCCceEEEecCCceEEEeccCCCccce---------------------------------
Confidence            2223322 334445      467899999999999999976533211                                 


Q ss_pred             eecCCCceEEEEeCCccCceEEEeeccCCCeEEEE--ecCCCceEeccccceeeecceeee
Q 007234          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~--~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                            .+..|...|-.+.  -.|++.+| +|+|.||.|++|++.
T Consensus       244 ----------------------~~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  244 ----------------------EFLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID  281 (362)
T ss_pred             ----------------------eeecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence                                  3445666666665  34778888 999999999999973

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.9e-21  Score=175.21  Aligned_cols=235  Identities=15%  Similarity=0.256  Sum_probs=193.4

Q ss_pred             CcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+.|..+  +|+| ....||+++.|.+|++||.+++++........                   ...-+.|.|.     
T Consensus        64 ~~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-------------------eni~i~wsp~-----  117 (313)
T KOG1407|consen   64 TDSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-------------------ENINITWSPD-----  117 (313)
T ss_pred             Ccchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------------cceEEEEcCC-----
Confidence            4566667  7777 55789999999999999999999998775322                   2334556665     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.+++++..+..|...|.++.+......  ..-.+..++|+-++.+|+.....|+|.|.....-+++..+++|...
T Consensus       118 ----g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn  191 (313)
T KOG1407|consen  118 ----GEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN  191 (313)
T ss_pred             ----CCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc
Confidence                8899999999999999999888765542  4456888999988888888778899999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +.||.|+|+|+++|+|+  ..+.+||++..-+++.+..+.-||..+.|+.||++|++++ +|..|-|=++++|...    
T Consensus       192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~----  266 (313)
T KOG1407|consen  192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRV----  266 (313)
T ss_pred             eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeE----
Confidence            99999999999999999  7999999999999999999999999999999999999987 8999999999999744    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecC---------CcEEEEEC
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---------GVCYIWYG  281 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---------g~i~iwd~  281 (612)
                       ..+.+..... .++|.     |...+|+-++.|         |.+++|-+
T Consensus       267 -~eI~~~~~t~-tVAWH-----Pk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  267 -WEIPCEGPTF-TVAWH-----PKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             -EEeeccCCce-eEEec-----CCCceeeEEecCCCCccccccceeEEecC
Confidence             4444444443 35555     888888877654         45666644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=3.4e-22  Score=193.33  Aligned_cols=236  Identities=16%  Similarity=0.219  Sum_probs=190.7

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      +.|  ++++.||||+|||+|+.|..|.||+.++++.++.|++|.+.|.+++|...                         
T Consensus       203 kei--l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-------------------------  255 (479)
T KOG0299|consen  203 KEI--LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-------------------------  255 (479)
T ss_pred             cee--EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-------------------------
Confidence            445  78899999999999999999999999999999999999999998888776                         


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                        ...+++++.|..|++|++.....+.++ .+|.+.|.++....-++.+-+|+.|+++++|++ ..+....+.++.+.+.
T Consensus       256 --t~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sid  331 (479)
T KOG0299|consen  256 --TSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSID  331 (479)
T ss_pred             --ccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCee
Confidence              677999999999999999988887665 589999999998887877777779999999999 3444456788888999


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cC-----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h-----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      |++|-.+ .++++|+  |.|.+|++...+++.... .|           +..|++++..|....+++++ ++|.|++|.+
T Consensus       332 cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i  409 (479)
T KOG0299|consen  332 CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKI  409 (479)
T ss_pred             eEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEe
Confidence            9999854 5677777  999999999888876552 11           23789999999998888876 8999999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEE
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIW  279 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iw  279 (612)
                      ..+-.. ...++.+. -..+++.++|+     ++|+++++| +....+-=|
T Consensus       410 ~~g~r~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  410 EDGLRA-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             cCCccc-cceeeecc-cccEEEEEEEc-----cCCCEEEEeccccccccee
Confidence            887332 12344444 45567778887     888876666 445444444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.89  E-value=1.4e-22  Score=186.28  Aligned_cols=240  Identities=16%  Similarity=0.280  Sum_probs=191.7

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--cCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ..+|+.|  .|+|....|++|+.|++|++||...-...+-++.  ...++.++.|.+.                      
T Consensus       172 ~devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs----------------------  227 (430)
T KOG0640|consen  172 VDEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS----------------------  227 (430)
T ss_pred             cCcccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC----------------------
Confidence            4678777  9999999999999999999999975544333322  1223333444433                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-  157 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-  157 (612)
                           |.++++|+.-..+++||+++.++.....  .+|++.|+++.+++.|+..++||.||.|++||--+++++.++.. 
T Consensus       228 -----GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  228 -----GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             -----CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence                 8999999999999999999999865443  57999999999999999999999999999999999999998854 


Q ss_pred             CCC-CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----CCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          158 STK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       158 ~~~-~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      |.+ .|.+..|..+|+++++.+  ..+++|.+.+++++.++.|-.     .--+...|+....|++.-....+.+.-||.
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda  382 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA  382 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence            443 899999999999999988  799999999999999887541     122345788888888876555678999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ++....   ....+.|... +..+..+     |.+.-+++++.|-.+++|-
T Consensus       383 Rtadr~---~l~slgHn~a-~R~i~HS-----P~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  383 RTADRV---ALLSLGHNGA-VRWIVHS-----PVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             cchhhh---hhcccCCCCC-ceEEEeC-----CCCCceeeecccceeeeee
Confidence            998755   3455555554 4555565     8899999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.9e-20  Score=188.10  Aligned_cols=269  Identities=17%  Similarity=0.158  Sum_probs=190.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEECC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG   95 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~~   95 (612)
                      +..+++++.||.|++||..+++.+..+..+.. +.                  ++.|.+.         +..+ ++++.+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~------------------~l~~~~d---------g~~l~~~~~~~   52 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PR------------------GITLSKD---------GKLLYVCASDS   52 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CC------------------ceEECCC---------CCEEEEEECCC
Confidence            35788999999999999999998888764322 22                  2344332         5544 566778


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l  174 (612)
                      +.|++||+.+++....+. .+. .+..++|+|+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+|+|+++
T Consensus        53 ~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLP-SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CeEEEEECCCCcEEEecc-CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence            899999999998876553 233 35788999999977655 5689999999999888777763 3346889999999999


Q ss_pred             EEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-----
Q 007234          175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-----  246 (612)
Q Consensus       175 ~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----  246 (612)
                      +++.   ..+.+||.++++....+.. ...+.++.|+|+++++++++..++.|.+||+.+++...   .......     
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~  205 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK---KITFEIPGVHPE  205 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee---eeeecccccccc
Confidence            9887   3578889998877665543 33457899999999887665468999999999876431   1111110     


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecC
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~  325 (612)
                      ......+.++     |++++++++ +.++.+.+||.++++.+...                                   
T Consensus       206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----------------------------------  245 (300)
T TIGR03866       206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL-----------------------------------  245 (300)
T ss_pred             cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence            1111234455     899886554 45678999998766543200                                   


Q ss_pred             CCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                           .+...+.+++|+|||++|.++++.++.+++|+...
T Consensus       246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence                                 01114667889999999934456789999999854

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=4.2e-21  Score=197.89  Aligned_cols=327  Identities=15%  Similarity=0.181  Sum_probs=227.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEE----EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      =|+++.++..++.+.||+..+++.-    ..+....                 ...++.+.. |+..       -+.|++
T Consensus       123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~-----------------~~~Ital~H-P~TY-------LNKIvv  177 (910)
T KOG1539|consen  123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVE-----------------GDFITALLH-PSTY-------LNKIVV  177 (910)
T ss_pred             ecceEEEEEccCcEEEEEeccccccccccceeeecc-----------------CCceeeEec-chhh-------eeeEEE
Confidence            3778888888899999998774111    0111000                 001222221 1111       356899


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg  171 (612)
                      |+..|.+.+||+++++.+.++ .++.+.|+++.=+|-=..++.|..+|+|.+++++.++.+.+|+...+.|++++|.-||
T Consensus       178 Gs~~G~lql~Nvrt~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG  256 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG  256 (910)
T ss_pred             eecCCcEEEEEeccCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence            999999999999999999888 5688999999999977789999999999999999999999999767899999999999


Q ss_pred             CEEEEeC---CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc------------
Q 007234          172 KMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------------  235 (612)
Q Consensus       172 ~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~------------  235 (612)
                      +.+.+.+   |.+.+||++..+.+..+. .|.+.|....|.|....+++++ .|+.+++|-.+++...            
T Consensus       257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCCC
Confidence            8765544   899999999988876665 7889999999999998888887 7998888855422210            


Q ss_pred             cceeeEee------------------------------------------------------------------------
Q 007234          236 SASCVLAM------------------------------------------------------------------------  243 (612)
Q Consensus       236 ~~~~~~~~------------------------------------------------------------------------  243 (612)
                      ...|+.-.                                                                        
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            00000000                                                                        


Q ss_pred             ------------------------cCC-----ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC---
Q 007234          244 ------------------------EHP-----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK---  291 (612)
Q Consensus       244 ------------------------~~~-----~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~---  291 (612)
                                              .+.     .....+++     +++-|++.+.|...|.|-+|++++|-....+.   
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~-----vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~  490 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC-----VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP  490 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEE-----EeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence                                    000     00111222     23778999999999999999999997766552   


Q ss_pred             CceeEeecccccCCCCcccchhhhcccccceecCCCceEEE---------------------------------EeCCcc
Q 007234          292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLLL  338 (612)
Q Consensus       292 ~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~---------------------------------~~g~~~  338 (612)
                      .+...+.... ...-++    .+++++.+|+...|+-.-..                                 .+....
T Consensus       491 ah~~~V~gla-~D~~n~----~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t  565 (910)
T KOG1539|consen  491 AHKGEVTGLA-VDGTNR----LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT  565 (910)
T ss_pred             cccCceeEEE-ecCCCc----eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence            2222222211 011112    56777777766666422111                                 011112


Q ss_pred             CceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       339 ~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      ..+.+.+.+|.+.++.++|||||++| ++++.|++||+|++-
T Consensus       566 ~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlp  606 (910)
T KOG1539|consen  566 RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLP  606 (910)
T ss_pred             hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEecc
Confidence            23444566899999999999999999 999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=5.5e-21  Score=174.85  Aligned_cols=297  Identities=11%  Similarity=0.126  Sum_probs=206.2

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      |-+.|++|  ...| .|+|+++|+.||.|.|||++....... .+......|+ ...+...+| ...++.+.|.|.+   
T Consensus        42 HgGsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~k~~c~-v~~~h~~~H-ky~iss~~WyP~D---  113 (397)
T KOG4283|consen   42 HGGSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIAKHKCI-VAKQHENGH-KYAISSAIWYPID---  113 (397)
T ss_pred             CCCcccee--eeccccceEEeecCCCccEEEEEeccccchhh-ccceeheeee-ccccCCccc-eeeeeeeEEeeec---
Confidence            44678777  7777 589999999999999999976541110 0000000111 122223344 4577889999998   


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC---CEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                           ...+.+++-|.+++|||.++-+....+.  -.+.|.+-+++|-.   -++++|..|-.|++.|+.+|..-+++.+
T Consensus       114 -----tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  114 -----TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             -----CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence                 7789999999999999999988876663  56788888898832   3577777888999999999999999999


Q ss_pred             CCCCeeEEEECCCCCEEE-EeC--CeEEEEEcCCC-eeEEEE--------------ecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          158 STKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDH-KKMQKF--------------SGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~-~~~--g~i~lwd~~~~-~~~~~~--------------~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      |...|.++.|+|...+++ +|+  |.|++||++.. .++..+              ..|.+.|.+++|+.++.++++++ 
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-  265 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-  265 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-
Confidence            999999999999888765 555  99999999753 222222              35778899999999999999998 


Q ss_pred             CCCeEEEEEcCCCccccceeeEe----ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee
Q 007234          220 GERYIALWRTDGVKKQSASCVLA----MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~  295 (612)
                      .|..+++|+..++..........    ..+....+.    +     -+...++---.++.+.++++-.+..++       
T Consensus       266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~----~-----~~s~vfv~~p~~~~lall~~~sgs~ir-------  329 (397)
T KOG4283|consen  266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ----S-----MDSDVFVLFPNDGSLALLNLLEGSFVR-------  329 (397)
T ss_pred             CccceEEeecccCcccccccccccccccccceEEEe----e-----cccceEEEEecCCeEEEEEccCceEEE-------
Confidence            68899999998876321000000    001111111    0     111222222334555555544443322       


Q ss_pred             EeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeec
Q 007234          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (612)
Q Consensus       296 ~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~  375 (612)
                                                                      .+..|...+.+.++.||=+.. .+|+.|+.+.
T Consensus       330 ------------------------------------------------~l~~h~k~i~c~~~~~~fq~~-~tg~~d~ni~  360 (397)
T KOG4283|consen  330 ------------------------------------------------RLSTHLKRINCAAYRPDFEQC-FTGDMNGNIY  360 (397)
T ss_pred             ------------------------------------------------eeecccceeeEEeecCchhhh-hccccCCccc
Confidence                                                            444565578888888888888 9999999999


Q ss_pred             ceee
Q 007234          376 GRYV  379 (612)
Q Consensus       376 ~w~~  379 (612)
                      .|..
T Consensus       361 ~w~p  364 (397)
T KOG4283|consen  361 MWSP  364 (397)
T ss_pred             cccc
Confidence            9964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=5.6e-20  Score=179.60  Aligned_cols=344  Identities=12%  Similarity=0.086  Sum_probs=244.2

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccccccccc---ccceeEEEeeeccccccccc-
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL---SVDYTCMKWLSVDRKKKRKL-   84 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~~~~w~~~~~~~~~~~-   84 (612)
                      +|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.+++...+   |.+   ..+-..+.|... -++.+.. 
T Consensus       250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki~~Wd~~-y~k~r~~e  324 (626)
T KOG2106|consen  250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKIILWDDN-YRKLRETE  324 (626)
T ss_pred             EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceEEecccc-cccccccc
Confidence            7889999997 569999999999999988887777799999988877665   332   334555677622 1111110 


Q ss_pred             -------------CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234           85 -------------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (612)
Q Consensus        85 -------------~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~  151 (612)
                                   +..-|++|+..+.|.-=+++++..+..  .+|....+.++.+|+.+.+++|+.|+.+++|+  ..++
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~  400 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL  400 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence                         122278888888887777777766533  47999999999999999999999999999999  4455


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      +-+.. ...++.|+.|+|.| .++.|.  |...+.|.++...+..-.. ..+++.++|+|+|.+|+.++ .|+.|++|.+
T Consensus       401 ~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~V  476 (626)
T KOG2106|consen  401 EWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGS-HDNHIYIYRV  476 (626)
T ss_pred             eEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEec-CCCeEEEEEE
Confidence            44433 45788999999999 888887  9999999999666555444 88999999999999999987 8999999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee-----EeecccccC
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI-----LSSSEDVNS  304 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~s  304 (612)
                      ......   ......+....+..+.|+     +|++++.+-+.|-.|.+|......++...+..+.     .+.....-.
T Consensus       477 s~~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~  548 (626)
T KOG2106|consen  477 SANGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG  548 (626)
T ss_pred             CCCCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc
Confidence            876533   233333445778888887     9999999999999999995444443333221111     000000001


Q ss_pred             CCCc--------ccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecc
Q 007234          305 KSQK--------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (612)
Q Consensus       305 ~~~~--------~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~  376 (612)
                      .++.        .....+++|...|.++++.     .-.......+....+|.+.|.+++|+.+-..+ ++.+.|.++..
T Consensus       549 s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~-----yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~q  622 (626)
T KOG2106|consen  549 SDGTDINAVARSHCEKLLASGDDFGKVHLFS-----YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQ  622 (626)
T ss_pred             cCCchHHHhhhhhhhhhhhccccCceEEEEc-----cccCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEE
Confidence            1111        0111444444444444322     11233456677888999999999999988888 55559999999


Q ss_pred             eee
Q 007234          377 RYV  379 (612)
Q Consensus       377 w~~  379 (612)
                      |.+
T Consensus       623 W~l  625 (626)
T KOG2106|consen  623 WRL  625 (626)
T ss_pred             EEe
Confidence            975

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=2e-21  Score=186.51  Aligned_cols=241  Identities=17%  Similarity=0.210  Sum_probs=199.7

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +..|..+  .|+|+...+++++.|-.|+||......+......|..+|+.....+.                        
T Consensus       261 ~kki~~v--~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------------------------  314 (506)
T KOG0289|consen  261 TKKITSV--KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------------------------  314 (506)
T ss_pred             ceEEEEE--EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC------------------------
Confidence            4456444  99999999999999999999999888888888888888876666666                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccC-CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                         +.+++.++.+|.....|+++|.++...... ..-.+++.+|+|||..|.+|..||.|++||+.++..+..|.+|.++
T Consensus       315 ---geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~  391 (506)
T KOG0289|consen  315 ---GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP  391 (506)
T ss_pred             ---CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence               999999999999999999999988666432 3346899999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      |..++|+.+|-+|+++.  +.|++||++..+.++++.-.. .++.++.|.+.|++|+.+| .|=.|++++-.+..   +.
T Consensus       392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~  467 (506)
T KOG0289|consen  392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WT  467 (506)
T ss_pred             eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ce
Confidence            99999999999999988  789999999988888776433 3699999999999999986 46445554433332   33


Q ss_pred             eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ++..+..+....+.+.|.     ...+++++++.|..++++.+
T Consensus       468 ~~~~~~~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  468 EIKELADHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeehhhhcccccceeeec-----ccceEEeeccchhheEEeec
Confidence            555555555566788887     77899999999999888754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.7e-21  Score=200.53  Aligned_cols=235  Identities=14%  Similarity=0.224  Sum_probs=189.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++|.|+|++|.+++.||.|++|+..+. +...++.-                     ....+.|....        ...
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---------------------~g~~v~~ia~~--------s~~   68 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---------------------SGELVSSIACY--------SNH   68 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---------------------cCceeEEEeec--------ccc
Confidence            3499999999999999999999987655 22222210                     11122232222        568


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                      +++|+.+++|.+|....++.-.-+ ...+-++++++|+.+|++++.||.|-.|++.++.+......+++|..+|.++.|+
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~  147 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD  147 (933)
T ss_pred             eEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence            999999999999999888764222 3467899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEEEecC--------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h--------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      |.+++||+.+  |.|++||++++.+...+.+-        ...+..++|+|+|..++..+ -|+.|++|+..+....   
T Consensus       148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~---  223 (933)
T KOG1274|consen  148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ---  223 (933)
T ss_pred             CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence            9999999887  99999999998776665432        34567789999976666666 5999999999988755   


Q ss_pred             eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      ..+...+....+..+.|+     |+|.|||+++.||.|.|||.++
T Consensus       224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence            334444555557788887     9999999999999999999987

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.9e-21  Score=177.43  Aligned_cols=247  Identities=15%  Similarity=0.167  Sum_probs=182.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus         8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      ..||.||+.|.+||+|+.||+|.|||..|...-+.+.+|.-++.+++|+++                           ++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d---------------------------gr   78 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD---------------------------GR   78 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC---------------------------CC
Confidence            568999999999999999999999999998887777777666665555555                           88


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEec-CC----CC
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA-ST----KG  161 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~----~~  161 (612)
                      .+++++.|..|.+||+..|.+++++.  ..++|+.+.|+|..+ .++++-.+..-.+-++..+... .+.. ..    ..
T Consensus        79 ~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~s  155 (405)
T KOG1273|consen   79 KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSS  155 (405)
T ss_pred             EeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccc
Confidence            99999999999999999999988873  679999999999543 3444434555555565443221 1111 11    12


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc---
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---  235 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~---  235 (612)
                      ..+..|.+.|+++++|.  |.+.++|..+.+++..++-.. ..|.++.|+..|++|+.-+ .|+.|+.|++..-...   
T Consensus       156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCcc
Confidence            34456899999999998  999999999999998887666 7899999999999999987 6999999998632111   


Q ss_pred             -cceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceeccc
Q 007234          236 -SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       236 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~  290 (612)
                       .......+.  -.......++|+     .+|.++++++. ...++||.-..|..++..
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceeeee
Confidence             000011111  112234456666     89999999875 457999998888776543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=2.4e-21  Score=187.71  Aligned_cols=255  Identities=15%  Similarity=0.243  Sum_probs=183.9

Q ss_pred             CcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccc-cccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      .+.|+.+  .+-|.. ..+|+.+..+.|.|||..+-.......+        .+.+++ ..||.. ....+.|....   
T Consensus       124 ~gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~-eg~glsWn~~~---  189 (422)
T KOG0264|consen  124 DGEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEK-EGYGLSWNRQQ---  189 (422)
T ss_pred             Cccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeecc-ccccccccccc---
Confidence            4556555  777754 4677778889999999864432221110        111111 234444 24457888776   


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeE------EEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC--CCce
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSL  151 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~--~~~~  151 (612)
                           ...+++|+.++.|++||+.....      ......+|+..|..++|++ +...|.+++.|+.+.+||++  +.++
T Consensus       190 -----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  190 -----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             -----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence                 56799999999999999976433      2345578999999999999 55678999999999999999  5666


Q ss_pred             eEEEecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEE
Q 007234          152 LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIAL  226 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~v  226 (612)
                      ....++|...|.|++|+| ++.+||+|+  ++|++||+++. +++.++.+|...|.++.|+|... .|+++| .|+.+.|
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~v  343 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNV  343 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEE
Confidence            777888999999999999 556677777  89999999975 56889999999999999999765 555555 7999999


Q ss_pred             EEcCCCccc---------cceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECC
Q 007234          227 WRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQ  282 (612)
Q Consensus       227 wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~  282 (612)
                      ||+..-...         ....+|...++...+.-..|.     |... .+++.+.|+.++||...
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence            998753322         122334444444444444444     5544 56777899999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-21  Score=174.89  Aligned_cols=234  Identities=16%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           14 SPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        14 spdg~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      +--|..||+|+.|++|+|+.++++   +.+.++.+|.+++....|.++ +  .                      +.+|+
T Consensus        20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP-k--~----------------------G~iLA   74 (299)
T KOG1332|consen   20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP-K--F----------------------GTILA   74 (299)
T ss_pred             hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc-c--c----------------------CcEee
Confidence            335889999999999999998755   468899999999998888887 1  0                      88999


Q ss_pred             EEECCCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCC---ceeEEEecCCCCeeE
Q 007234           91 LGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGISC  164 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~v~~  164 (612)
                      +++.||.|.||.-.+|+-.+. ....|.+.|++++|.|.  |-.|++++.||.|.+.+++..   ...+....|.-.|++
T Consensus        75 ScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns  154 (299)
T KOG1332|consen   75 SCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS  154 (299)
T ss_pred             EeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence            999999999999988853211 12469999999999984  456999999999999988754   233445678889999


Q ss_pred             EEECCC---C-----------CEEEEeC--CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCC----cEEEEEEcCCC
Q 007234          165 MAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KYVLSSAVGER  222 (612)
Q Consensus       165 l~~spd---g-----------~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~----~~l~s~s~~d~  222 (612)
                      ++|.|-   |           +.|++|+  +.|+||+...++  .-++|.+|...|+.++|.|.-    .++++++ .||
T Consensus       155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-qDg  233 (299)
T KOG1332|consen  155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-QDG  233 (299)
T ss_pred             eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-CCC
Confidence            999985   4           5688888  899999998763  345689999999999999964    4788886 899


Q ss_pred             eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ++.||..+..... .........+ .++-.+.++     ..|+.|++++.|+.+.+|.
T Consensus       234 ~viIwt~~~e~e~-wk~tll~~f~-~~~w~vSWS-----~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  234 TVIIWTKDEEYEP-WKKTLLEEFP-DVVWRVSWS-----LSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cEEEEEecCccCc-ccccccccCC-cceEEEEEe-----ccccEEEEecCCcEEEEEE
Confidence            9999988743221 1111111222 233445566     8899999999999999996

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.5e-21  Score=194.11  Aligned_cols=316  Identities=13%  Similarity=0.136  Sum_probs=218.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccc-eeEEEeeec-ccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD-YTCMKWLSV-DRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~w~~~-~~~   79 (612)
                      |++.|++|  +.+|.|.+||+|+.||+|+||.+.+|+|+.++. ..+.|.+++|++.-...-+... ..|+....+ -+.
T Consensus       399 Htg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  399 HTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             cCCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            46778766  899999999999999999999999999999886 3334555555544110000000 000000000 000


Q ss_pred             c-ccccCCcEEEEE----ECCCcEEEEEcCCCeEE---EEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCC
Q 007234           80 K-KRKLGSSLLVLG----TGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLT  148 (612)
Q Consensus        80 ~-~~~~~~~~l~~g----s~~g~I~vwd~~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~  148 (612)
                      . ........++.+    ..++.+..|.-...+..   ..+.-.|...|..+.|+..|.+|++...+   ..|.++++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence            0 000001122222    12344556654421111   01223588999999999999999988654   4799999987


Q ss_pred             CceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      .+...-|+...+.|.++.|+|...+|++++ ..|++||+..+..++++......|..++.+|.|..|+.++ .|+.+..+
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~Wf  634 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWF  634 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEE
Confidence            766666766778899999999999999999 8999999998888888877778899999999999999887 79999999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~  307 (612)
                      |+.-....    ...+.++...+..++|.     +.-.++++|+.||++.||...-...+.                   
T Consensus       635 DldlsskP----yk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg~VY~Dl~-------------------  686 (733)
T KOG0650|consen  635 DLDLSSKP----YKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHGMVYNDLL-------------------  686 (733)
T ss_pred             EcccCcch----hHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEeeeeehhhh-------------------
Confidence            99876533    45667788888888886     667789999999999998632111110                   


Q ss_pred             cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCC----eEEEEecCCCceEeccccceeeecce
Q 007234          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNCSQDGVLLPMSQSLLKSKRGR  377 (612)
Q Consensus       308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~l~~S~dg~~l~~s~s~d~~~~~w  377 (612)
                      +                           +.+......+.+|...    |..+.|.|...+| +|++.|+++|+|
T Consensus       687 q---------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL-fsAGAd~tirlf  732 (733)
T KOG0650|consen  687 Q---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL-FSAGADGTIRLF  732 (733)
T ss_pred             c---------------------------CCceEeeeeccCceeecccceEeecccCCCceE-EecCCCceEEee
Confidence            0                           0111112345555544    8888999999999 999999999998

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6.5e-21  Score=175.98  Aligned_cols=261  Identities=19%  Similarity=0.241  Sum_probs=191.1

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|.++  .|+|.++.|+.++.||++++||+........++ |..++.+++|..                           
T Consensus        15 ~IS~v--~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d---------------------------   64 (323)
T KOG1036|consen   15 GISSV--KFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD---------------------------   64 (323)
T ss_pred             ceeeE--EEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC---------------------------
Confidence            46555  999999999999999999999999887666664 555555555543                           


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                       ...+++|+.||.|+.+|+.++....  ...|..+|.|+.+++....+++||.|++|++||.+.......+.. ...|.+
T Consensus        65 -~~~~~~G~~dg~vr~~Dln~~~~~~--igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~  140 (323)
T KOG1036|consen   65 -ESTIVTGGLDGQVRRYDLNTGNEDQ--IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC  140 (323)
T ss_pred             -CceEEEeccCceEEEEEecCCccee--eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence             3458999999999999999988752  256999999999999888899999999999999987666666654 347888


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc----
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS----  236 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~----  236 (612)
                      +...  |..|++|.  ..+.+||+++.....+.  ..-.-.+.++++-|++.-+++++ -||.|.+=.++......    
T Consensus       141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhce
Confidence            8876  55566544  79999999987543322  22345688999999777677766 69988876666552111    


Q ss_pred             -ceeeEeec---CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234          237 -ASCVLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (612)
Q Consensus       237 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~  308 (612)
                       ..|.....   .....+..+.|+     |-...|+||+.||.|.+||+.+.+.+..+.+-...+.+.. |+-++.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls-fs~dG~  287 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS-FSMDGS  287 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE-eccCCC
Confidence             11211111   112445667776     7778899999999999999999988877766644444333 555554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=2.3e-22  Score=188.83  Aligned_cols=272  Identities=10%  Similarity=0.035  Sum_probs=207.6

Q ss_pred             cccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            4 SNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         4 ~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ..|.++  +=+|.. ..+|+|+.||.|+|||+.+..++.+|+.|.+.|.++++..                         
T Consensus        67 dGV~~l--akhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-------------------------  119 (433)
T KOG0268|consen   67 DGVSCL--AKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-------------------------  119 (433)
T ss_pred             cccchh--hcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-------------------------
Confidence            455444  777766 6789999999999999999999999999998888776653                         


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                          ..+++++.|.+|+.|.+... ....+.  ..+.+.++.-+..+..++|||.+  |.+||.....+++.+.-....|
T Consensus       120 ----~~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti  190 (433)
T KOG0268|consen  120 ----TSFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSI  190 (433)
T ss_pred             ----cceEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCce
Confidence                34789999999999998763 444442  34667888877777889999764  8999999999999999888899


Q ss_pred             eEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          163 SCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       163 ~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      .++.|+|-... |+++.  +.|.+||++++.+++++. -.-.-+.|+|+|.+-.|+++ .+|..++.||++.-+..    
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a-~ED~nlY~~DmR~l~~p----  264 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAA-NEDHNLYTYDMRNLSRP----  264 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeec-cccccceehhhhhhccc----
Confidence            99999996654 44543  899999999999887775 23345789999955445554 58999999999886543    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce-eEeecccccCCCCcccchhhhccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-ILSSSEDVNSKSQKSATAAIFAAK  318 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~i~~~~  318 (612)
                      +.....+...+..+.|+     |.|+-+++||.|.+|+||....+.........+ ..+.+.. ++-|.+    +|++|+
T Consensus       265 ~~v~~dhvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk-~S~Dsk----yi~SGS  334 (433)
T KOG0268|consen  265 LNVHKDHVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK-YSMDSK----YIISGS  334 (433)
T ss_pred             chhhcccceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE-Eecccc----EEEecC
Confidence            23334555566667787     999999999999999999987775432222221 2233333 677888    999999


Q ss_pred             ccceecCCC
Q 007234          319 LQDIVKPAS  327 (612)
Q Consensus       319 ~d~~~~~~~  327 (612)
                      .|+.+++|.
T Consensus       335 dd~nvRlWk  343 (433)
T KOG0268|consen  335 DDGNVRLWK  343 (433)
T ss_pred             CCcceeeee
Confidence            988777655

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.6e-23  Score=207.49  Aligned_cols=232  Identities=15%  Similarity=0.244  Sum_probs=201.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+..|..+  ..-..++.+++|+.|..+-+|.+..-..+..+.+|.+++.++.|..+                       
T Consensus        27 hsaav~~l--k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~-----------------------   81 (825)
T KOG0267|consen   27 HSAAVGCL--KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS-----------------------   81 (825)
T ss_pred             hhhhhcee--eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc-----------------------
Confidence            45566555  55567788999999999999999888888889999999998888877                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          ..+|+.|+.+|+|++||++.++.++.+ .+|...+..+.|+|-+.++++|+.|+.+++||.+..-+.+.+.+|...
T Consensus        82 ----E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ----ERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             ----hhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence                778999999999999999999988766 589999999999999999999999999999999988999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +.++.|+|+|++++.++  .++++||...|+...+|.+|.+.+..+.|+|..-.+.+++ .|+++++||+++-..+    
T Consensus       157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I----  231 (825)
T KOG0267|consen  157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVI----  231 (825)
T ss_pred             eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEEe----
Confidence            99999999999999998  7999999999999999999999999999999887777776 7999999999976533    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                       -..+.....+.+..|.     +++..+.+|..+.
T Consensus       232 -~s~~~~~~~v~~~~fn-----~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  232 -SSGKPETDGVRSLAFN-----PDGKIVLSGEQIS  260 (825)
T ss_pred             -eccCCccCCceeeeec-----CCceeeecCchhh
Confidence             2222334445677776     8998888887654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=1.1e-21  Score=190.99  Aligned_cols=230  Identities=16%  Similarity=0.253  Sum_probs=183.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      +|...|||+-|++|+.-.++.|||+..-...  .++.........+..+++                           .+
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak  522 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK  522 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence            3589999999999999999999999865533  222211111111222222                           67


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (612)
                      +.+++..||+|.|||+.....++.+ .+|+..+.|+..++||..|+||+.|++|+.||++.++.+.... ....|.++.+
T Consensus       523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~  600 (705)
T KOG0639|consen  523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY  600 (705)
T ss_pred             eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence            7899999999999999998888777 7899999999999999999999999999999999998776654 4568999999


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      +|.+.++++|-  +.+.+...... ....+.-|.+-|.++.|++.|+++++.| .|..+..|...-+..     ++....
T Consensus       601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGas-----iFqskE  673 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS-----IFQSKE  673 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCccccc-----eeeccc
Confidence            99999999998  67777775433 3456778999999999999999999998 799999999888763     355555


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ...+++| .++     .|.+++++|+.|+...+|.+
T Consensus       674 ~SsVlsC-DIS-----~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 SSSVLSC-DIS-----FDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCcceee-eec-----cCceEEEecCCCcceEEEEE
Confidence            5555444 344     78899999999999988864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=6.4e-21  Score=186.59  Aligned_cols=281  Identities=13%  Similarity=0.150  Sum_probs=198.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF------  155 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~------  155 (612)
                      |..+++|+.|.+|++||...-.    ..+.+.......|.++.|++.|..|++.+.....+++|-...+.....      
T Consensus       179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI  258 (641)
T KOG0772|consen  179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI  258 (641)
T ss_pred             CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence            8889999999999999997532    233444555678999999999999999998999999995433332222      


Q ss_pred             ------ecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee-EEEEe-----cCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          156 ------RASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       156 ------~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~-~~~~~-----~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                            ++|...++|.+|+|+.+ .+++++  |++++||+...+. ...+.     +..-+++.++|+|||+++++++ .
T Consensus       259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-~  337 (641)
T KOG0772|consen  259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-L  337 (641)
T ss_pred             hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-c
Confidence                  45777899999999764 344555  9999999986543 22222     3345789999999999988887 7


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce-ecccCCce-eEee
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE-LRNTKATK-ILSS  298 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~-~~~~~~~~-~~~~  298 (612)
                      ||.|.+|+..........++.........++++.|+     +||++|++-+.|+++++||++..+. +....... .--.
T Consensus       338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~  412 (641)
T KOG0772|consen  338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG  412 (641)
T ss_pred             CCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence            999999998655433222333333344578899998     9999999999999999999987643 22221111 1111


Q ss_pred             cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                      ....|+|+.+    .|++|...-. ....|. +..+....+....++......|..+.|.|.-..+ +.|+.||+++++.
T Consensus       413 tdc~FSPd~k----li~TGtS~~~-~~~~g~-L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi-~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  413 TDCCFSPDDK----LILTGTSAPN-GMTAGT-LFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI-FAGSGDGTAHVYY  485 (641)
T ss_pred             CccccCCCce----EEEecccccC-CCCCce-EEEEeccceeeEEEecCCCceEEEEeecchhhhe-eeecCCCceEEEE
Confidence            2334888888    8888865321 111232 3333355555566776777779999999999888 7777789998885


Q ss_pred             e
Q 007234          379 V  379 (612)
Q Consensus       379 ~  379 (612)
                      -
T Consensus       486 d  486 (641)
T KOG0772|consen  486 D  486 (641)
T ss_pred             C
Confidence            4

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=181.87  Aligned_cols=287  Identities=11%  Similarity=0.138  Sum_probs=216.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC--CcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      -++|+++  .|+|....|.+|+.||+++||.+..  ...++.+.-...++.+..|.+.                      
T Consensus       213 ~~~I~sv--~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~----------------------  268 (514)
T KOG2055|consen  213 HGGITSV--QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN----------------------  268 (514)
T ss_pred             cCCceEE--EecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC----------------------
Confidence            4678766  9999999999999999999998752  3344444433444444444443                      


Q ss_pred             ccccCCc-EEEEEECCCcEEEEEcCCCeEEEE-eccCCC-CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           81 KRKLGSS-LLVLGTGGGDVLALAVSAGQLKWR-LSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        81 ~~~~~~~-~l~~gs~~g~I~vwd~~~~~~~~~-~~~~h~-~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                           |. .+++++...-.+.||+.+++...- ...++. ..+..+..+|++++|+.+|..|.|.+....+++.+..++-
T Consensus       269 -----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki  343 (514)
T KOG2055|consen  269 -----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI  343 (514)
T ss_pred             -----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence                 55 788888888899999999876421 112333 4577888999999999999999999999999999999884


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCE--EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                       .+.|..++|+.||+.|++.+  |.|++||+++..++.++.. .+.|  ++++.++++.||++++ ..|.|.|||.++..
T Consensus       344 -eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  344 -EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCF  420 (514)
T ss_pred             -ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEecc-CcceEEEeccchhh
Confidence             67899999999999887765  9999999999999988863 3333  4577789999999987 79999999966432


Q ss_pred             cc-cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec--CCcEEEEECCCcceecccCCceeEeecccccCCCCccc
Q 007234          234 KQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (612)
Q Consensus       234 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  310 (612)
                      .. ...++..+..-...++.+.|+     +|++.|+.+|.  +..+++-.+.+.......+.             .    
T Consensus       421 ~s~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-------------~----  478 (514)
T KOG2055|consen  421 ASTNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-------------S----  478 (514)
T ss_pred             ccCCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCC-------------C----
Confidence            11 123556666667778888897     99999988876  55777766554443221110             0    


Q ss_pred             chhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       311 ~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                         ...-+.|+|++|||.|-++ +-|..++.+.+|.+
T Consensus       479 -----------------------------------n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL  511 (514)
T KOG2055|consen  479 -----------------------------------NTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKL  511 (514)
T ss_pred             -----------------------------------CCcccceEEEEecCCCceE-EeecCCCceeeEee
Confidence                                               1112378999999999999 99999999999976

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=9.3e-21  Score=191.82  Aligned_cols=222  Identities=15%  Similarity=0.251  Sum_probs=184.3

Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        12 ~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      +|-+ ++-.+++|+.|+.+.+|...+......+++|.+.|.++.-..+                           +. ++
T Consensus        65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~---------------------------~~-~i  116 (745)
T KOG0301|consen   65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED---------------------------GT-LI  116 (745)
T ss_pred             eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc---------------------------Cc-eE
Confidence            6665 4446889999999999999999999999999887775544333                           33 89


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd  170 (612)
                      +|+.|.++++|-...-  ... ..+|+..|+++..-|++ .++|||.|.+|++|.-  ++.+++|.+|.+.|..+++-++
T Consensus       117 SgSWD~TakvW~~~~l--~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  117 SGSWDSTAKVWRIGEL--VYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             ecccccceEEecchhh--hcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence            9999999999987543  323 47999999999999987 8999999999999984  8899999999999999999988


Q ss_pred             CCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCcee
Q 007234          171 GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (612)
Q Consensus       171 g~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (612)
                      +.++-++. |.|++|++ +|+++.++.||++.|.++....++..++++| +|+++++|+...       +...+.++...
T Consensus       191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e-------~~q~I~lPtts  261 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDE-------CVQVITLPTTS  261 (745)
T ss_pred             CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCc-------eEEEEecCccc
Confidence            77776666 99999999 8889999999999999999778888899998 899999999762       56677777744


Q ss_pred             EEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      +-.+.+-     ++|. +++|+.||.|+||...
T Consensus       262 iWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  262 IWSAKVL-----LNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence            4444443     5554 7889999999999865

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=1.6e-20  Score=189.92  Aligned_cols=333  Identities=13%  Similarity=0.124  Sum_probs=240.4

Q ss_pred             eeEEEEcCC-CC-EEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            8 DILTSFSPA-LD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         8 ~l~~~fspd-g~-~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      .+|+++.|+ +. .+|.|+.+..|.++.-.++  +.+.++.+|.+.+.++.|+..   ++                    
T Consensus       148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~--------------------  204 (764)
T KOG1063|consen  148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG--------------------  204 (764)
T ss_pred             hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence            356677774 44 3456666777888865433  567789999999999999877   11                    


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCe------------------------EEE------EeccCCCCCeEEEEEecCCCEEE
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY  133 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~------------------------~~~------~~~~~h~~~V~~l~~sp~~~~l~  133 (612)
                       +.-++++++.|..|+||.+.-+.                        .+.      .++.||.+-|+++.|+|.+..|+
T Consensus       205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL  283 (764)
T KOG1063|consen  205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL  283 (764)
T ss_pred             -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence             04578899999999999875332                        111      23358999999999999998999


Q ss_pred             EEecCCcEEEEECCCC--cee-----EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCC
Q 007234          134 SAGADGMVCEIDPLTG--SLL-----GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA  201 (612)
Q Consensus       134 s~s~dg~v~iwd~~~~--~~~-----~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~  201 (612)
                      ++|.|.++.+|...+.  --+     ..+.+...+.....|+|++..+++-+  |..++|-.+..   .....+.||...
T Consensus       284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~  363 (764)
T KOG1063|consen  284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG  363 (764)
T ss_pred             ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence            9999999999976543  222     22333345789999999999888877  99999983332   234456899999


Q ss_pred             EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce-------------ee----------------------------
Q 007234          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-------------CV----------------------------  240 (612)
Q Consensus       202 v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~-------------~~----------------------------  240 (612)
                      |..++|+|.|.+|++.| .|.+-++|-.-..+ ....             |+                            
T Consensus       364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q-~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQ-QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             ceeeeecCCCCEEEEec-cccceeeecccccc-cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence            99999999999999998 69888876433110 0000             00                            


Q ss_pred             ---------------------------------E--------------------------------------------ee
Q 007234          241 ---------------------------------L--------------------------------------------AM  243 (612)
Q Consensus       241 ---------------------------------~--------------------------------------------~~  243 (612)
                                                       +                                            .+
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                                             0                                            00


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccc
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK  318 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~  318 (612)
                      ..+..-+.+++.     +|+|+++++++...     .|++|+..+..+.+.++.+...+.... |+|+++    ++++++
T Consensus       522 YGHGyEv~~l~~-----s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~-FSpdg~----~LLsvs  591 (764)
T KOG1063|consen  522 YGHGYEVYALAI-----SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA-FSPDGR----YLLSVS  591 (764)
T ss_pred             ccCceeEEEEEe-----cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE-ECCCCc----EEEEee
Confidence            011122223333     49999999997643     689999999888887888877777555 999999    999999


Q ss_pred             ccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      .|....+|..    ..+......|..+..|+.-||.+.|+||+.++ +|+|.|+++++|...+
T Consensus       592 RDRt~sl~~~----~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  592 RDRTVSLYEV----QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPD  649 (764)
T ss_pred             cCceEEeeee----ecccchhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccC
Confidence            9987776652    22222222255677899889999999999998 9999999999998744

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=3.3e-21  Score=194.94  Aligned_cols=242  Identities=17%  Similarity=0.221  Sum_probs=203.6

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .||++  +.||+|++||+|..-|+++||++...+....+..|.+.+.++.|+.+-.                        
T Consensus       461 G~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~------------------------  514 (1080)
T KOG1408|consen  461 GFRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL------------------------  514 (1080)
T ss_pred             ceEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh------------------------
Confidence            46666  9999999999999999999999999999999999999999888887611                        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC--CEEEEEecCCcEEEEECCCCceeEEEe-----c
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFR-----A  157 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~  157 (612)
                      +.++|++++.|.-|+|||+..+-.+...+.+|.+.|+++.|..+|  ..+++|+.|..|.+--.+....-..|.     .
T Consensus       515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~  594 (1080)
T KOG1408|consen  515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL  594 (1080)
T ss_pred             hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence            167899999999999999998877767778999999999998877  669999999987653332111111121     1


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec---CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .+..++.+++.|..+++++++  ..|+|||+++++..+.|+|   |.+..-.+...|.|.|+++++ .|+++.++|..++
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sg  673 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSG  673 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEeccc
Confidence            234789999999999999998  7999999999999999964   667777888999999999998 5999999999999


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      +     |+..+..+...++.+.|.     +|-++|++.+.||.|.||.+..
T Consensus       674 E-----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  674 E-----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             h-----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECch
Confidence            8     556777888888999998     8999999999999999999754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=9.6e-20  Score=177.97  Aligned_cols=312  Identities=14%  Similarity=0.129  Sum_probs=225.0

Q ss_pred             eEEEEcC--CCCEEEEE--eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            9 ILTSFSP--ALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         9 l~~~fsp--dg~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      -|++||+  .|.+|+..  +.+..+.|||++.+......+.....+.                  ...|.|.        
T Consensus       158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~------------------~a~FHPt--------  211 (626)
T KOG2106|consen  158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVF------------------LATFHPT--------  211 (626)
T ss_pred             eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEE------------------EEEeccC--------
Confidence            3569998  35666654  3467899999998877665544333333                  3344444        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEe--cc-CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRL--SD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~--~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                       +..+++....|.+..|+++.+....+.  ++ ....-|.|++|.++|. +++|..+|.|.+|+..+.+..+....|.+.
T Consensus       212 -d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg  289 (626)
T KOG2106|consen  212 -DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGG  289 (626)
T ss_pred             -CCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence             445677777889999999988765432  22 2236799999999886 889999999999999888877777799999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCe-----------eE-----------------------------EEEecCC
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------KM-----------------------------QKFSGHP  199 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~-----------~~-----------------------------~~~~~h~  199 (612)
                      |.+++.-.+|.+|- |+  ..|..||-.-.+           .+                             ....+|.
T Consensus       290 v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~  368 (626)
T KOG2106|consen  290 VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG  368 (626)
T ss_pred             eEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc
Confidence            99999999998777 66  789999831000           00                             1224677


Q ss_pred             CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234          200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (612)
Q Consensus       200 ~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw  279 (612)
                      .....++.+|+...+++++ .|+.+++|+  ..+.     .++.. -.....++.|.     |.| .++.|+..|...+.
T Consensus       369 delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~-----~wt~~-~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  369 DELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKL-----EWTKI-IEDPAECADFH-----PSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             cceeeEEcCCChhheeecc-CcceEEEcc--CCce-----eEEEE-ecCceeEeecc-----Ccc-eEEEeeccceEEEE
Confidence            7888899999999999998 899999999  2221     22222 12233556676     888 99999999999999


Q ss_pred             ECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC
Q 007234          280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (612)
Q Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~  359 (612)
                      |.++...+..+.. ..++.... |+|++.    .++.|+.|+.+|++.    +..+...+....+..+  ..++.+.||+
T Consensus       434 d~e~~~lv~~~~d-~~~ls~v~-ysp~G~----~lAvgs~d~~iyiy~----Vs~~g~~y~r~~k~~g--s~ithLDwS~  501 (626)
T KOG2106|consen  434 DTETQDLVTIHTD-NEQLSVVR-YSPDGA----FLAVGSHDNHIYIYR----VSANGRKYSRVGKCSG--SPITHLDWSS  501 (626)
T ss_pred             ecccceeEEEEec-CCceEEEE-EcCCCC----EEEEecCCCeEEEEE----ECCCCcEEEEeeeecC--ceeEEeeecC
Confidence            9999766654444 33333333 899998    999999998887753    2121222222333333  6899999999


Q ss_pred             CCceEeccccceeeecce
Q 007234          360 DGVLLPMSQSLLKSKRGR  377 (612)
Q Consensus       360 dg~~l~~s~s~d~~~~~w  377 (612)
                      |++++ ++-|-|--+..|
T Consensus       502 Ds~~~-~~~S~d~eiLyW  518 (626)
T KOG2106|consen  502 DSQFL-VSNSGDYEILYW  518 (626)
T ss_pred             CCceE-EeccCceEEEEE
Confidence            99999 999999999999

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=6.4e-21  Score=185.80  Aligned_cols=275  Identities=14%  Similarity=0.221  Sum_probs=205.2

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      .++++|...+++.+|+ .|-|+|||+....   .+..+..         ..++      ...-+| ...+.         
T Consensus       423 cAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdc---------l~rd------nyiRSc-kL~pd---------  476 (705)
T KOG0639|consen  423 CAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDC---------LNRD------NYIRSC-KLLPD---------  476 (705)
T ss_pred             EEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccc---------cCcc------cceeee-EecCC---------
Confidence            4568899999999988 4689999996431   1111110         0000      111122 22222         


Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      ++.|++|+.-.++.|||+......... +....-.+.+++.+||.+..++|..||.|.+||+.+...++.|++|.+.+.|
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc  556 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  556 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence            788999999899999999876542111 1222346788999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      |.+++||..|.+|+  ++|+.||+++++.+.+.. ..+.|.++..+|++.+++.+= +.+.+.|-.....++      +.
T Consensus       557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yq  628 (705)
T KOG0639|consen  557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQ  628 (705)
T ss_pred             EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------ee
Confidence            99999999999999  899999999987765543 467899999999999999874 788777776655542      33


Q ss_pred             ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccce
Q 007234          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~  322 (612)
                      +..+...+-.+.|.     +-|+++++.+.|+.+..|...-|..+...+                               
T Consensus       629 lhlheScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqsk-------------------------------  672 (705)
T KOG0639|consen  629 LHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------------------------  672 (705)
T ss_pred             ecccccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeecc-------------------------------
Confidence            44455566667787     899999999999999999755443322100                               


Q ss_pred             ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                               -.+.|.++.+|.|.+|+ +|||-|+...++++
T Consensus       673 -------------------------E~SsVlsCDIS~ddkyI-VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  673 -------------------------ESSSVLSCDISFDDKYI-VTGSGDKKATVYEV  703 (705)
T ss_pred             -------------------------ccCcceeeeeccCceEE-EecCCCcceEEEEE
Confidence                                     01268899999999999 99998888777765

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=2.9e-22  Score=203.30  Aligned_cols=210  Identities=15%  Similarity=0.195  Sum_probs=181.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      .+.++.|+.+..+-+|.+..-..+..+ .+|.++|.++.|+++..+|++|+.+|+|++||+..++.++++.+|...+.++
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv  118 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV  118 (825)
T ss_pred             ceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence            677889999999999998876666554 6899999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (612)
                      .|+|-+.+.+.|+  +.+++||.+..-+...+.+|...|..+.|+|+|+++++++ +|..++|||+..++..     ..+
T Consensus       119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef  192 (825)
T KOG0267|consen  119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF  192 (825)
T ss_pred             eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence            9999999998888  8999999998888999999999999999999999999998 6999999999888744     334


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~  308 (612)
                      ..+...+..+.|.     |..-+++.|+.|+++++||+++.+.+...++....+.+.. |.++++
T Consensus       193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~  251 (825)
T KOG0267|consen  193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK  251 (825)
T ss_pred             ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence            4334444445565     7778899999999999999999999887777766666554 777776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=5.6e-19  Score=177.42  Aligned_cols=239  Identities=11%  Similarity=0.093  Sum_probs=172.7

Q ss_pred             EEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fspdg~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ++|+|||+.+ ++++.++.|++||..+++....+..+..                   ...+.|.+.         ++.+
T Consensus        36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~---------g~~l   87 (300)
T TIGR03866        36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-------------------PELFALHPN---------GKIL   87 (300)
T ss_pred             eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-------------------ccEEEECCC---------CCEE
Confidence            4999999976 5667789999999999988776643211                   123344433         4555


Q ss_pred             EE-EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-cEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234           90 VL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMAV  167 (612)
Q Consensus        90 ~~-gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (612)
                      ++ +..++.|++||+.+++.+..+.  +...+.+++|+|+|+.+++++.++ .+..||..+++....+.. ...+.+++|
T Consensus        88 ~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~  164 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF  164 (300)
T ss_pred             EEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence            44 4568899999999988776653  234578899999999999888765 567789988877665543 334578999


Q ss_pred             CCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCC-------CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          168 SSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       168 spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      +|+|+++++++   +.|++||+++++.+..+..+..       ....++|+|++++++.+...++.+.+||+.+++..  
T Consensus       165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--  242 (300)
T TIGR03866       165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--  242 (300)
T ss_pred             CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--
Confidence            99999886543   8999999999988776653321       23468899999986655435778999999876543  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccC
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~  291 (612)
                         ....+.. .+..+.|+     |+|++|++++ .+|.|.+||+.+++.+..++
T Consensus       243 ---~~~~~~~-~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       243 ---DYLLVGQ-RVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             ---EEEEeCC-CcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence               1112222 34456676     9999998874 58999999999988766443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.8e-21  Score=196.82  Aligned_cols=237  Identities=15%  Similarity=0.220  Sum_probs=184.5

Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEECCC---CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        12 ~fsp-dg~~las~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .|+. +.++||+++..|.|.+||+..   .+.+..|..|.                  +...++.|.+..        ..
T Consensus        94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~------------------Rs~~~ldfh~te--------p~  147 (839)
T KOG0269|consen   94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE------------------RSANKLDFHSTE--------PN  147 (839)
T ss_pred             ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc------------------cceeeeeeccCC--------cc
Confidence            4543 467999999999999999976   44555565444                  345567777666        67


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM  165 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l  165 (612)
                      +|++|+.||.|++||++..+-...+ .+....|.++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             EEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence            9999999999999999998877666 45788999999999 5678999999999999999865 5677789999999999


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec-CCCCEEEEEEeeCCcEE-EEEEc-CCCeEEEEEcCCCccccceee
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYV-LSSAV-GERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l-~s~s~-~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      .|+|++.+||+|+  +.|+|||+.+++......- ...+|.++.|-|..++. ++++. .|-.|+|||++-.-..    .
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----~  302 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----Y  302 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----c
Confidence            9999999999999  8999999987654333322 35789999999987754 44332 3678999999876543    3


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      ..+..+...++.++|.    +.|...+.+++.||++..-..++
T Consensus       303 ~t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  303 ATFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             eeeeccCccccceecc----CCCceeeEeecCccHHHHhhhhc
Confidence            4455666667777776    35677899999999886554433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=3.2e-20  Score=179.89  Aligned_cols=245  Identities=12%  Similarity=0.127  Sum_probs=184.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEE---------eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCc-----
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-----  150 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~---------~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~-----  150 (612)
                      ..+|++++.++.|+|||.....-...         .+.+|...-++++|++.. ..|++|+.|++|++||+....     
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~  216 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV  216 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence            67888899999999999865322111         235788888899999843 469999999999999987542     


Q ss_pred             --eeEEEecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcC--CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          151 --LLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       151 --~~~~~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                        +...+.+|...|..++|+|-. .++++++  +.+.|||++  +.++.....+|.++|.|++|+|-+.+++++++.|++
T Consensus       217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence              345688899999999999954 4455555  899999999  566677788999999999999977666555557999


Q ss_pred             EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccccc
Q 007234          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (612)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (612)
                      |.+||+++-+.    +...+..+...+..+.|++    .....|++++.|+++.+||+..-..-+.   ..        .
T Consensus       297 V~LwDlRnL~~----~lh~~e~H~dev~~V~WSP----h~etvLASSg~D~rl~vWDls~ig~eq~---~e--------d  357 (422)
T KOG0264|consen  297 VALWDLRNLNK----PLHTFEGHEDEVFQVEWSP----HNETVLASSGTDRRLNVWDLSRIGEEQS---PE--------D  357 (422)
T ss_pred             EEEeechhccc----CceeccCCCcceEEEEeCC----CCCceeEecccCCcEEEEeccccccccC---hh--------h
Confidence            99999998764    3566677777777788872    3456788889999999999854322110   00        0


Q ss_pred             CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      ..++.                   ..+++           .-.||...|..+.|.|...++++|.++|+++-+|..
T Consensus       358 a~dgp-------------------pEllF-----------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  358 AEDGP-------------------PELLF-----------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             hccCC-------------------cceeE-----------EecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence            00100                   00011           334788899999999999998899999999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.6e-19  Score=181.18  Aligned_cols=241  Identities=13%  Similarity=0.131  Sum_probs=188.9

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .+.|.+|  +|++.+ .|.+.+.+|.|.-||+.+++....++..++.+.+++.++.                        
T Consensus        69 drsIE~L--~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------  121 (691)
T KOG2048|consen   69 DRSIESL--AWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------  121 (691)
T ss_pred             CCceeeE--EEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc------------------------
Confidence            3567777  899655 5667788999999999999999999887777776666665                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-----
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----  156 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----  156 (612)
                         +..+++|+.||.+..++...+..... .+...++.|.+++|+|++..+++|+.||.|++||..++..+....     
T Consensus       122 ---~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~  198 (691)
T KOG2048|consen  122 ---NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR  198 (691)
T ss_pred             ---cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence               78899999999888888888876533 334456899999999999999999999999999999998776221     


Q ss_pred             c---CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          157 A---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       157 ~---~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .   ...-|+++.|-.++ .+++|+  |+|.+||...+.+++.+..|.+.|.+++..+++.+++++| -|+.|..+...+
T Consensus       199 l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~  276 (691)
T KOG2048|consen  199 LSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTT  276 (691)
T ss_pred             cccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecC
Confidence            1   12257788887665 566676  9999999999999999999999999999999999999998 699998888877


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      .+.. ........++...+.+++..     +  ..+++|+.|+.+.+-....
T Consensus       277 ~~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  277 NKSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             Cccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence            6542 12222333455555555554     3  3899999999998876544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.1e-20  Score=179.40  Aligned_cols=198  Identities=20%  Similarity=0.239  Sum_probs=165.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---------CCceeEEEe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR  156 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~  156 (612)
                      |.+++.|+-.|+|++|.+.+|..+..+ .+|-..|+++.|+.||.+|+|||.||.|.+|++.         +-++++.|.
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~  171 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS  171 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence            788888889999999999999998655 7899999999999999999999999999999763         346788899


Q ss_pred             cCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          157 ASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       157 ~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .|.-+|+.+...+.  ...+++++  .++++||+..+..+.++. ....+.+++..|.++.++.|+ .+|.|.+.++...
T Consensus       172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL  249 (476)
T ss_pred             cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence            99999999998765  35677777  899999999999988886 567899999999999988887 7999998887654


Q ss_pred             cccc-----------ceeeEeecCCc--eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          233 KKQS-----------ASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       233 ~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      ....           ...+..+..+.  ..+++++.+     -||..|++|+.||.++|||+.+.+.+++..
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            3111           11222233333  378888888     899999999999999999999998887665

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=5.6e-20  Score=184.46  Aligned_cols=291  Identities=18%  Similarity=0.208  Sum_probs=201.3

Q ss_pred             ccceeEEEEcCCC---CEEEEEeCCCcEEEEECCCCcEE------EEeeccCCccccccccccccccccccceeEEEeee
Q 007234            5 NIRDILTSFSPAL---DYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         5 ~V~~l~~~fspdg---~~las~s~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      ++.-+++.|++..   ..||.+..||.|.++|.......      ..+..|..                  .+..+.|.+
T Consensus        49 p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n------------------AifDl~wap  110 (720)
T KOG0321|consen   49 PVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN------------------AIFDLKWAP  110 (720)
T ss_pred             CCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc------------------eeEeeccCC
Confidence            3444567888743   47889999999999998755433      22223333                  344566666


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc---
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS---  150 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~---  150 (612)
                      .         ...|++++.|.++++||+.++.+... +..+|...|.+++|.|.++ .|++|+.||.|.+||++-..   
T Consensus       111 g---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~  181 (720)
T KOG0321|consen  111 G---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA  181 (720)
T ss_pred             C---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence            2         67899999999999999999988754 3468999999999999654 58899999999999986321   


Q ss_pred             ------------------------eeEEEecCCCCeeE---EEECCCCCEEEEeC---CeEEEEEcCCCeeE--------
Q 007234          151 ------------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKM--------  192 (612)
Q Consensus       151 ------------------------~~~~~~~~~~~v~~---l~~spdg~~l~~~~---g~i~lwd~~~~~~~--------  192 (612)
                                              .+...+++...|.+   +.+..|...||+++   +.|++||++.....        
T Consensus       182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~  261 (720)
T KOG0321|consen  182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS  261 (720)
T ss_pred             HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence                                    12222334444555   56667899999887   79999999876432        


Q ss_pred             EEEecC---CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE
Q 007234          193 QKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (612)
Q Consensus       193 ~~~~~h---~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  269 (612)
                      ..+..|   .-.+.++.....|.+|++.+ .|+.|+.|++......   .+..+.+.-.   ..++...+.+|++.++++
T Consensus       262 ~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~s---P~~~~sg~~~---~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  262 DKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSIS---PVAEFSGKLN---SSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             cCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcC---chhhccCccc---ceeeeeeecCCCCceEec
Confidence            222333   23466677777789998887 5999999999876543   2222222111   111112223499999999


Q ss_pred             EecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccC
Q 007234          270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS  349 (612)
Q Consensus       270 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~  349 (612)
                      |+.|...++|.+.+.+.--                        .                              .+.+|.
T Consensus       335 gSsd~~ayiw~vs~~e~~~------------------------~------------------------------~l~Ght  360 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPEAPP------------------------A------------------------------LLLGHT  360 (720)
T ss_pred             cCCCcceeeeeecCccCCh------------------------h------------------------------hhhCcc
Confidence            9999999999876543300                        0                              244677


Q ss_pred             CCeEEEEecCCCceEeccccceeeecceeeecce
Q 007234          350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRV  383 (612)
Q Consensus       350 ~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~  383 (612)
                      .+|++++|.|....=++++|+|...++|++.+.+
T Consensus       361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            7888888887554434788999999999985543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=5e-20  Score=170.06  Aligned_cols=188  Identities=14%  Similarity=0.208  Sum_probs=159.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC------CC-----------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT-----------  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~------~~-----------  148 (612)
                      ...+.+++.|.+.+||.+++|.|+.++ .+|.+.|+++.|++.+.++++++.|++-.||..      ..           
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe  238 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE  238 (481)
T ss_pred             CcceeecccccceeEEeeccccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence            557888999999999999999999888 689999999999999999999999999999961      11           


Q ss_pred             -------------------C----ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEE
Q 007234          149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR  203 (612)
Q Consensus       149 -------------------~----~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~  203 (612)
                                         +    -++..+.+|...|.+..|-..|+.+++++  .+..+||++++.++..+.||....+
T Consensus       239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence                               0    13556788889999999999999999999  7999999999999999999999999


Q ss_pred             EEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      .++-+|..+++++++ .|.+.++||++..-.    .+..+..+...++.+.|.      .+..+++|+.|.+|++||+++
T Consensus       319 HcstHptQrLVvTsS-rDtTFRLWDFReaI~----sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAIQ----SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             ccccCCcceEEEEec-cCceeEeccchhhcc----eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence            999999998888876 899999999984321    344555566666667774      456789999999999999876


Q ss_pred             cc
Q 007234          284 IE  285 (612)
Q Consensus       284 ~~  285 (612)
                      ..
T Consensus       388 MR  389 (481)
T KOG0300|consen  388 MR  389 (481)
T ss_pred             cc
Confidence            53

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.1e-20  Score=186.70  Aligned_cols=234  Identities=15%  Similarity=0.212  Sum_probs=191.5

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccc-cccccccccccceeEEEeeecccccccccCCcE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLY-GNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +..-+|+-|+++|.|-+|++|+...+  -+..++..|...|.++++ ...                           ..+
T Consensus        80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~---------------------------~~l  132 (735)
T KOG0308|consen   80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN---------------------------NEL  132 (735)
T ss_pred             HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC---------------------------cee
Confidence            45567888999999999999999887  577888888888887777 444                           778


Q ss_pred             EEEEECCCcEEEEEcCCCeE--E--------EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           89 LVLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~--~--------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      +++|+-|+.|.+||++++..  +        ..+..++..+|++++.++.|..+++|+..+.+++||.++++.+..+++|
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH  212 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH  212 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence            99999999999999998722  2        1222378899999999999989999999999999999999999999999


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      ...|.++..++||+.+++++  |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|+++.... 
T Consensus       213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~-  290 (735)
T KOG0308|consen  213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKS-  290 (735)
T ss_pred             ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchhh-
Confidence            99999999999999999998  9999999999999999999999999999999999999987 7999999999885332 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                       ..++.-+++..-+.   ..     ....-+-+++.|+.|+-|..+-
T Consensus       291 -tlick~daPv~~l~---~~-----~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  291 -TLICKEDAPVLKLH---LH-----EHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             -eEeecCCCchhhhh---hc-----cccCCceeeeccccceecCCcc
Confidence             13333333332221   11     2223347778889999997543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.1e-18  Score=174.56  Aligned_cols=242  Identities=12%  Similarity=0.166  Sum_probs=189.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+++|.  |+|||.+.+.||.+-.||.|.||++..+=+...+                ..|+.......++|..      
T Consensus        24 ~Ps~I~--slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------   79 (691)
T KOG2048|consen   24 KPSEIV--SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------   79 (691)
T ss_pred             eccceE--EEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc------
Confidence            467885  5599999999999999999999999876544332                2245567788899983      


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE--EecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~  159 (612)
                          +..|++.+.+|.|.-||+.+++.+..+ +...+.|++++.+|.+..++.|+.||.+..++...++....  +...+
T Consensus        80 ----~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~  154 (691)
T KOG2048|consen   80 ----GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK  154 (691)
T ss_pred             ----CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence                667999999999999999999998777 56789999999999999999999999888888877765544  44456


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      +.+.+++|+|++..+++|+  |.|++||..++..+....        +...-|.++.|-.++. ++++. ..|+|++||.
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgD-S~G~V~FWd~  232 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGD-SAGTVTFWDS  232 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEec-CCceEEEEcc
Confidence            7999999999999999998  889999999987665221        1334477888887774 67765 5899999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ..+...     .....+...+-+++..     +++.++++++.|+.|..|...+.
T Consensus       233 ~~gTLi-----qS~~~h~adVl~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  233 IFGTLI-----QSHSCHDADVLALAVA-----DNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             cCcchh-----hhhhhhhcceeEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence            998755     2223233333444454     78899999999999988876554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=4.7e-19  Score=179.47  Aligned_cols=344  Identities=13%  Similarity=0.109  Sum_probs=223.8

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234            6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      |.++  .|+|.+..|.+++.|.++.+|...+..-+..-..--+.+           ++....+-...|++.         
T Consensus       270 V~sv--~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~-----------gg~a~GF~g~lw~~n---------  327 (764)
T KOG1063|consen  270 VYSV--WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV-----------GGSAGGFWGGLWSPN---------  327 (764)
T ss_pred             eEEE--EEccchhhheecccCcceEEEecCCccceEEEEEEeecc-----------cccccceeeEEEcCC---------
Confidence            4445  999999999999999999999876553222211111100           111223334556554         


Q ss_pred             CcEEEEEECCCcEEEEEcCCC-e-EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC----------C-----
Q 007234           86 SSLLVLGTGGGDVLALAVSAG-Q-LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL----------T-----  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~-~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~----------~-----  148 (612)
                      ++.++.-+..|..++|..... . .......||.+.|.++.|+|.|.+|+++|.|.+-|+|-.-          .     
T Consensus       328 ~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG  407 (764)
T KOG1063|consen  328 SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG  407 (764)
T ss_pred             CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence            677888899999999983322 1 1223447999999999999999999999999888876321          0     


Q ss_pred             -----------------C---ceeEEEe----------------------------------------------------
Q 007234          149 -----------------G---SLLGKFR----------------------------------------------------  156 (612)
Q Consensus       149 -----------------~---~~~~~~~----------------------------------------------------  156 (612)
                                       |   +.++.|+                                                    
T Consensus       408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~  487 (764)
T KOG1063|consen  408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV  487 (764)
T ss_pred             ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence                             0   0111111                                                    


Q ss_pred             -----------------------------------cCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE
Q 007234          157 -----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       157 -----------------------------------~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~  194 (612)
                                                         +|...|++++.+|+|+++|++.       ..|++|+..+-..+..
T Consensus       488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~  567 (764)
T KOG1063|consen  488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE  567 (764)
T ss_pred             eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence                                               4566889999999999999987       3799999999888889


Q ss_pred             EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                      +.+|.-.|+.++|||||++|++.+ .|+++.+|.......... .......+..++-.+.|+     |++++++|+|.|+
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~-~fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK  640 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEF-RFACLKAHTRIIWDCSWS-----PDEKYFATASRDK  640 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhh-hhccccccceEEEEcccC-----cccceeEEecCCc
Confidence            999999999999999999999998 799999999855433211 111244566666666666     9999999999999


Q ss_pred             cEEEEECCCc--ceecccC--CceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC----ceEEEee
Q 007234          275 VCYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKIL  346 (612)
Q Consensus       275 ~i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~----~~~~~~~  346 (612)
                      .|++|.....  +.+..+.  +....++.......+.......++.|-..|.+.++.-...-..++...    .......
T Consensus       641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~  720 (764)
T KOG1063|consen  641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI  720 (764)
T ss_pred             eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccccc
Confidence            9999998776  3332211  111122222211222222122444454444443332110000011100    1111233


Q ss_pred             ccCCCeEEEEecCC----------CceEeccccceeeecceee
Q 007234          347 VNSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       347 ~h~~~v~~l~~S~d----------g~~l~~s~s~d~~~~~w~~  379 (612)
                      .|...|..+.|+|-          ...| ++|++|.+.|+.++
T Consensus       721 ~~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv  762 (764)
T KOG1063|consen  721 GPDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV  762 (764)
T ss_pred             ChHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence            57778999999964          2445 88889999998875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=2.7e-19  Score=169.19  Aligned_cols=213  Identities=15%  Similarity=0.249  Sum_probs=152.4

Q ss_pred             ccceeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccc-cccccccceeEEEeeecccccc
Q 007234            5 NIRDILTSFSP--ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         5 ~V~~l~~~fsp--dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .++.+  .-++  +..+.|+=+..|.|.|||+...  +..+......+....+.+-+ ..+|. ...-.+.|.|..    
T Consensus       153 ~~NRv--r~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~----  223 (440)
T KOG0302|consen  153 GINRV--RVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIK----  223 (440)
T ss_pred             cccee--eecccCCcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEecccC-ccceeeeccccc----
Confidence            34444  4444  3446666677899999998532  11121111111111111111 11443 344567888754    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEE--EeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCc---eeEEE
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS---LLGKF  155 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~---~~~~~  155 (612)
                          ...+++|..-+.|++|.+.+|.-..  .-+.+|+..|-+++|||. ...|++||.||+|+|||++.+.   ++. .
T Consensus       224 ----~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~  298 (440)
T KOG0302|consen  224 ----TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-T  298 (440)
T ss_pred             ----ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-e
Confidence                4557888888999999999876431  222469999999999995 4569999999999999999883   333 3


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC---CeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEc
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRT  229 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~  229 (612)
                      +.|...|+.|.|+.+..+||+|+  |+++|||+++   ++++..|+-|..+|+++.|+|... .++++| .|.+|.+||+
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDl  377 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDL  377 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEe
Confidence            78999999999999888999998  9999999975   578999999999999999999654 445554 7999999998


Q ss_pred             CCC
Q 007234          230 DGV  232 (612)
Q Consensus       230 ~~~  232 (612)
                      ...
T Consensus       378 svE  380 (440)
T KOG0302|consen  378 SVE  380 (440)
T ss_pred             ecc
Confidence            654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.8e-19  Score=161.99  Aligned_cols=240  Identities=13%  Similarity=0.235  Sum_probs=173.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      |+.|++-|+.+|+|+.|++|+|||..+.    .+...++.|.+.+..+.|.++..                         
T Consensus        18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf-------------------------   72 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF-------------------------   72 (361)
T ss_pred             eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc-------------------------
Confidence            4599999999999999999999996433    46677888888888777776611                         


Q ss_pred             CcEEEEEECCCcEEEEEcCCC-------e-EEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC------
Q 007234           86 SSLLVLGTGGGDVLALAVSAG-------Q-LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG------  149 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~-------~-~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~------  149 (612)
                      |+.+++++.|+++.||.=...       + .....+....+.|+++.|.|  -|-.+++++.||.+|+|+.-..      
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence            889999999999999976211       1 11222345678899999999  4567999999999999986433      


Q ss_pred             ceeEEEe-------cCCCCeeEEEECCC---CCEEEEeC-------CeEEEEEcCCC----eeEEEEecCCCCEEEEEEe
Q 007234          150 SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFS  208 (612)
Q Consensus       150 ~~~~~~~-------~~~~~v~~l~~spd---g~~l~~~~-------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~s  208 (612)
                      .....++       .+..+..|+.|+|.   ..++|+|+       +.++||....+    ..+.++.+|..+|+.++|.
T Consensus       153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA  232 (361)
T ss_pred             hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence            2222333       34557889999973   46788887       38899976544    3467788999999999999


Q ss_pred             eCC----cEEEEEEcCCCeEEEEEcCCCc------------c---ccceeeEeec-CCceeEEeEEecCCccCCCCcEEE
Q 007234          209 DNG----KYVLSSAVGERYIALWRTDGVK------------K---QSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVL  268 (612)
Q Consensus       209 p~~----~~l~s~s~~d~~i~vwd~~~~~------------~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  268 (612)
                      |+-    ..+++++ .|| |+||.+....            .   .....+..+. |...+.. +.|.     -.|..|.
T Consensus       233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr-v~wN-----mtGtiLs  304 (361)
T KOG2445|consen  233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR-VRWN-----MTGTILS  304 (361)
T ss_pred             cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE-EEEe-----eeeeEEe
Confidence            962    3456665 799 9999987421            0   0011222233 3334443 4454     6789999


Q ss_pred             EEecCCcEEEEECC
Q 007234          269 AISETGVCYIWYGQ  282 (612)
Q Consensus       269 t~s~dg~i~iwd~~  282 (612)
                      +.+.||.|++|...
T Consensus       305 StGdDG~VRLWkan  318 (361)
T KOG2445|consen  305 STGDDGCVRLWKAN  318 (361)
T ss_pred             ecCCCceeeehhhh
Confidence            99999999999743

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=4.4e-19  Score=164.54  Aligned_cols=269  Identities=17%  Similarity=0.232  Sum_probs=182.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccc-cccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      |.|||||.-|.+-+.|..+.+|++-..-.-..-.   ...   -+.... ..-.....+-..+|.+.-  +..++...++
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~---~~~---~~~~~~~~r~~eg~tvydy~wYs~M--~s~qP~t~l~  126 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD---GPL---NFSKHLSYRYQEGETVYDYCWYSRM--KSDQPSTNLF  126 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCC---Ccc---ccccceeEEeccCCEEEEEEeeecc--ccCCCcccee
Confidence            5899999999999999999999974221110000   000   000000 000011223344565321  0011126788


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEec-cCCCCC---eEEEEEecCCCEEEEEecCCcEEEEEC-CCCceeEE---Ee----c
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGG---VSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK---FR----A  157 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~---V~~l~~sp~~~~l~s~s~dg~v~iwd~-~~~~~~~~---~~----~  157 (612)
                      ++.+.+.-|++||.-+|+....+. ..|...   -.+++|+|||..|++| ...+|++||+ +.|+-...   +.    +
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccc
Confidence            888999999999999998765442 124333   4689999999998877 6788999999 55542221   11    1


Q ss_pred             CCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          158 STKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       158 ~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ..+-+.|++|+|.. +.+++|+  ..+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++++..|-.|.+||++....
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            24578999999954 5888888  67888888888899999999999999999999999999987788999999998754


Q ss_pred             ccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC-cceecccCCcee
Q 007234          235 QSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKATKI  295 (612)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~-~~~~~~~~~~~~  295 (612)
                      .    ++.+..+ ...-.-+.|.   ..|++++|++|+.||.|++||++. ++..........
T Consensus       286 p----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd  341 (406)
T KOG2919|consen  286 P----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD  341 (406)
T ss_pred             h----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence            3    3333322 2122333443   238999999999999999999987 554444444333

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.5e-19  Score=171.92  Aligned_cols=253  Identities=18%  Similarity=0.202  Sum_probs=170.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEE---EEeeccCCcccc-ccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g   92 (612)
                      |+|+|.|..|..|.|||+.=-..+   ..+....+.... .........+|.. ..-.+.|.-..        .+.|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n~~~--------~nVLaSg  262 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWNRNF--------RNVLASG  262 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhcccc--------ceeEEec
Confidence            689999999999999998532211   111000000000 0000000001211 11133443322        6789999


Q ss_pred             ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCce-eEEEecCCCCeeEEEECCC
Q 007234           93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSL-LGKFRASTKGISCMAVSSD  170 (612)
Q Consensus        93 s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~spd  170 (612)
                      +.|.+|++||+.+|++...+ ..|...|.++.|+| ....|++||.|++|.+.|++.... -..++ ..+.|..++|.|.
T Consensus       263 saD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~  340 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPH  340 (463)
T ss_pred             CCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCC
Confidence            99999999999999998776 46999999999999 456799999999999999985332 23344 3568999999997


Q ss_pred             CCEEEEeC---CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          171 GKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       171 g~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      ....+.++   |+++-+|++.. +++.++..|.++|.++++++.-..+++.++.|+.|++|++......   .+......
T Consensus       341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~~~~~  417 (463)
T KOG0270|consen  341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKEHSFK  417 (463)
T ss_pred             CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccccccc
Confidence            66544443   99999999976 8999999999999999999877665555568999999999876543   11111111


Q ss_pred             ceeEEeEEecCCccCCC-CcEEEEEecCCcEEEEECCCcceec
Q 007234          247 AVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~-~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      -..+.+..+.     |+ ..+++.|+..+.+++||+.+...++
T Consensus       418 ~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  418 LGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ccceeecccC-----CCcceEEEecCccceEEEeecccChhHH
Confidence            1113333333     33 3567778888899999988776543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.9e-19  Score=158.24  Aligned_cols=235  Identities=17%  Similarity=0.170  Sum_probs=173.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCc--eeEEEecCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~  159 (612)
                      +..|++++.|++|+|+.++.+..  +...+.+|.++|+.++|..  -|..|++|+.||.|.+|.-..|+  ....+..|.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            78899999999999999987542  2233479999999999965  78999999999999999987774  345567789


Q ss_pred             CCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCCEEEEEEeeC---C-----------cEEEEEE
Q 007234          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA  218 (612)
Q Consensus       160 ~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~---~-----------~~l~s~s  218 (612)
                      ..|++++|.|.  |-.|++++  |.|.+.+.++.   ..-+....|.-.|++++|.|.   |           +.|+++|
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            99999999985  56777776  99999988754   223455789999999999986   4           5689988


Q ss_pred             cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee
Q 007234          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (612)
                       .|..|+||+...+.-.   .-..+..+...++-+++.|..- --..++++++.||++.||... .+. .          
T Consensus       183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~-~e~-e----------  245 (299)
T KOG1332|consen  183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKD-EEY-E----------  245 (299)
T ss_pred             -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEec-Ccc-C----------
Confidence             6999999999886432   2233556666666677763221 123679999999999999643 110 0          


Q ss_pred             cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                            +-..                           ..       +......++++.||+.|.+|.++++ |+.+.+|.
T Consensus       246 ------~wk~---------------------------tl-------l~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwk  284 (299)
T KOG1332|consen  246 ------PWKK---------------------------TL-------LEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWK  284 (299)
T ss_pred             ------cccc---------------------------cc-------cccCCcceEEEEEeccccEEEEecC-CcEEEEEE
Confidence                  0000                           00       0011236899999999999955555 88889995

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4e-18  Score=178.14  Aligned_cols=264  Identities=15%  Similarity=0.099  Sum_probs=194.4

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                      .+.++|.+.         +++|++++.||.|++|+.............+...|.+++..  +.+|++|+.+++|.+|.+.
T Consensus        16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            556666655         78999999999999999887732223333377888888764  4589999999999999998


Q ss_pred             CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      +++.-..+....-++.+++|+.+|+++|.|+  -.|++.++........+.+|.++|.++.|+|.+.+|++++ .||.|+
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~  163 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQ  163 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceEE
Confidence            8876656665667899999999999999999  6899999999988999999999999999999999999987 699999


Q ss_pred             EEEcCCCccccc-eee-EeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEe-eccc
Q 007234          226 LWRTDGVKKQSA-SCV-LAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSED  301 (612)
Q Consensus       226 vwd~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~  301 (612)
                      +|++.++..... ..+ ...+.. ..++....|+     |+|..+++.+.|+.|++|+..+++............ .+..
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence            999998764310 000 011111 3455566676     999999999999999999998887765443332211 3333


Q ss_pred             ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceE
Q 007234          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL  364 (612)
Q Consensus       302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l  364 (612)
                      .|+|.|+    +|+++..++.+-+||..       .    .++ ......|.+++|-|++.-+
T Consensus       239 ~wsPnG~----YiAAs~~~g~I~vWnv~-------t----~~~-~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  239 QWSPNGK----YIAASTLDGQILVWNVD-------T----HER-HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             EEcCCCc----EEeeeccCCcEEEEecc-------c----chh-ccccceeEEEecCCCCCee
Confidence            4778877    78888776544444411       0    011 1123357788888887766

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1e-17  Score=154.92  Aligned_cols=255  Identities=20%  Similarity=0.214  Sum_probs=178.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +..|++++.||.+++||+........+  .|..++.+++|.++ ..+++|+.||.|+.+|+.++... .+..|..++.||
T Consensus        25 ~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci  100 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCI  100 (323)
T ss_pred             CCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEE
Confidence            677888899999999999988765555  48999999999974 46999999999999999877653 445588999999


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (612)
                      .+++....+++|+  ++|++||.++......+. ....|.++..+  |..|+.++ .|+.+.+||+++.....   ...-
T Consensus       101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~-~~r~v~iyDLRn~~~~~---q~re  173 (323)
T KOG1036|consen  101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGT-SDRKVLIYDLRNLDEPF---QRRE  173 (323)
T ss_pred             EeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEee-cCceEEEEEcccccchh---hhcc
Confidence            9999888899998  899999999866555554 33478887765  55788876 69999999999876431   0111


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee----cccCC-------ceeEe-ecccccCCCCcccc
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL----RNTKA-------TKILS-SSEDVNSKSQKSAT  311 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~----~~~~~-------~~~~~-~~~~~~s~~~~~~~  311 (612)
                      ..-...+.++++-     |++.-.++++-||+|.+=.++..+..    ..++-       ..+.. .....|.|...   
T Consensus       174 S~lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~---  245 (323)
T KOG1036|consen  174 SSLKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG---  245 (323)
T ss_pred             ccceeEEEEEEEe-----cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc---
Confidence            1223445566665     77888899999998877544443111    11111       11111 11223666655   


Q ss_pred             hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc
Q 007234          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (612)
Q Consensus       312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s  369 (612)
                       .+++|+.||.+..||+..       .+ ....+..-...|.+++|+.||..| +.++
T Consensus       246 -tfaTgGsDG~V~~Wd~~~-------rK-rl~q~~~~~~SI~slsfs~dG~~L-Aia~  293 (323)
T KOG1036|consen  246 -TFATGGSDGIVNIWDLFN-------RK-RLKQLAKYETSISSLSFSMDGSLL-AIAS  293 (323)
T ss_pred             -eEEecCCCceEEEccCcc-------hh-hhhhccCCCCceEEEEeccCCCeE-EEEe
Confidence             799999988888877221       11 111222223359999999999999 4443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8.5e-19  Score=162.09  Aligned_cols=255  Identities=14%  Similarity=0.127  Sum_probs=180.9

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec
Q 007234          120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (612)
Q Consensus       120 V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~  197 (612)
                      -.|+.|++.|.+|++|+.||.|.+||+.+...-+.+.+|..+|++++||+||+.|++++  ..|.+||+..|.+++.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            68999999999999999999999999999998888999999999999999999999999  799999999999998886 


Q ss_pred             CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCce---eEEeEEecCCccCCCCcEEEEEecCC
Q 007234          198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       198 h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                      ..++|....|+|.....+.++--+..-.+-++..+...    ++.......   ..+...|.     +.|+++++|+..|
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~fd-----r~g~yIitGtsKG  175 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVFD-----RRGKYIITGTSKG  175 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccccccccccccc-----CCCCEEEEecCcc
Confidence            78899999999965433333323554555565543321    122221111   11222344     8999999999999


Q ss_pred             cEEEEECCCcceecccCCce-eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC----ceEEEeeccC
Q 007234          275 VCYIWYGQNIEELRNTKATK-ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKILVNS  349 (612)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~----~~~~~~~~h~  349 (612)
                      .+.++|..+.+.+..++... ..+. ...++..+.    .++.-+.|..++.++..-+...|....    ..++.+. ..
T Consensus       176 kllv~~a~t~e~vas~rits~~~IK-~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk  249 (405)
T KOG1273|consen  176 KLLVYDAETLECVASFRITSVQAIK-QIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV-NK  249 (405)
T ss_pred             eEEEEecchheeeeeeeechheeee-EEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH-hh
Confidence            99999999998877665544 2222 222455555    677777777777777664443332211    1111111 11


Q ss_pred             CCeEEEEecCCCceEeccccceeeecceeee--cceeecccCC
Q 007234          350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ--NRVTALDRAN  390 (612)
Q Consensus       350 ~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~--~~~~~~~~~~  390 (612)
                      -.-.+++||.||.|++++.+.-..+.+|+..  +-++.|....
T Consensus       250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence            1345788999999997777778899999863  3377776544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=8.2e-18  Score=154.94  Aligned_cols=227  Identities=17%  Similarity=0.161  Sum_probs=172.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.+||  |+++|+.||..+++|+.|+.+++||+.+++..+ +..|.+++                  .++.|.+...   
T Consensus        71 ~~~Pv--L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~~Hd~pv------------------kt~~wv~~~~---  126 (347)
T KOG0647|consen   71 HDGPV--LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-VAAHDAPV------------------KTCHWVPGMN---  126 (347)
T ss_pred             cCCCe--EEEEEccCCceEEeeccCCceEEEEccCCCeee-eeecccce------------------eEEEEecCCC---
Confidence            46788  888999999999999999999999999997654 44455444                  4556665432   


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-Ee-cCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FR-AST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~  159 (612)
                          ...|++|+.|.+|+.||++....+.++.  -.+.|+++..-  ...++++..+..|.+++++.+..... .. ...
T Consensus       127 ----~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk  198 (347)
T KOG0647|consen  127 ----YQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLK  198 (347)
T ss_pred             ----cceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence                4579999999999999999888876663  45677777653  44788888999999999977643222 11 123


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCC--eeEEEEecCCC---------CEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPG---------AVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~---------~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      ..+.|++..+|....+.|+  |.+.+..+..+  +.-..|+.|..         .|++|+|+|....|+++| .||+...
T Consensus       199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-sDGtf~F  277 (347)
T KOG0647|consen  199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-SDGTFSF  277 (347)
T ss_pred             ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec-CCceEEE
Confidence            4688999999888888888  99999888776  44455666652         477899999988999998 5999999


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s  271 (612)
                      ||-+...++     ...+.+...+.+..|+     .+|.+++-+.
T Consensus       278 WDkdar~kL-----k~s~~~~qpItcc~fn-----~~G~ifaYA~  312 (347)
T KOG0647|consen  278 WDKDARTKL-----KTSETHPQPITCCSFN-----RNGSIFAYAL  312 (347)
T ss_pred             ecchhhhhh-----hccCcCCCccceeEec-----CCCCEEEEEe
Confidence            998766533     3445566677888887     8888877663

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=2.6e-18  Score=166.49  Aligned_cols=204  Identities=14%  Similarity=0.196  Sum_probs=159.0

Q ss_pred             ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEec-CCCEEEEEecCCc
Q 007234           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGM  140 (612)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~  140 (612)
                      ...+++++|.|..+       .+++++|...|+|-+||+.+.+   .-..+...|..+|.++.|+| +-..+++.|.||+
T Consensus       186 ~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  186 DRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             ccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            55788899988764       3789999999999999995322   11233467999999999999 4457999999999


Q ss_pred             EEEEECCCCce--eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEE
Q 007234          141 VCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       141 v~iwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      |++-|++.+..  +.........+.++.|+.+...++.++  |...+||.+++.. ...+.-|...|.+++++|...+++
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99999987643  333333455788899998887777777  9999999998755 666778899999999999877555


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .+++-|++.+|||++.-..... +....-.+...+..++|+     |.+..|++.+.|..|+|||.
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             eecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeec
Confidence            4445899999999987654421 233334556677888898     88888999999999999997

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=5.6e-18  Score=155.27  Aligned_cols=195  Identities=13%  Similarity=0.143  Sum_probs=154.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCe------------EE--EEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQ------------LK--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~------------~~--~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~  150 (612)
                      ++++++|+.||.|.+||++...            ++  .....+|.-.|.++.|-| |...|.++|.|.++++||..+-+
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ  135 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ  135 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence            8899999999999999997643            10  112356888999999999 66788999999999999999999


Q ss_pred             eeEEEecCCCCeeEEEECCCC---CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          151 LLGKFRASTKGISCMAVSSDG---KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       151 ~~~~~~~~~~~v~~l~~spdg---~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      ....|+ .++.|++-+++|-.   .++|+|.  -.|++.|+.+|..-..+.||.+.|.++.|+|...+++..++.||.|+
T Consensus       136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence            888887 46678888998843   4566666  58999999999999999999999999999999998877777899999


Q ss_pred             EEEcCCCccc----------cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          226 LWRTDGVKKQ----------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       226 vwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      +||++....-          .......-..+...+..++|.     .++.++++++.|..+++|+..+|+.
T Consensus       215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             EEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEeecccCcc
Confidence            9999764210          000111122233344566676     8999999999999999999988864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=5.1e-17  Score=150.11  Aligned_cols=264  Identities=11%  Similarity=0.074  Sum_probs=179.4

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe---ccCCCCCeEEEEEec--CCCEEEEEecCCcE
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---SDCHPGGVSAISFAT--HGSCIYSAGADGMV  141 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v  141 (612)
                      -..|+.|...         |+.+++|+.|++|+|||.......+..   -+.|.+.|..+.|.+  -|+.+++||.|+++
T Consensus        15 lihdVs~D~~---------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   15 LIHDVSFDFY---------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             eeeeeeeccc---------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            3455666555         888999999999999997654432222   257999999999965  58889999999999


Q ss_pred             EEEECCC---------CceeEEEecCCCCeeEEEECC--CCCEEEEeC--CeEEEEEcCCC------eeEEEEe------
Q 007234          142 CEIDPLT---------GSLLGKFRASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDH------KKMQKFS------  196 (612)
Q Consensus       142 ~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp--dg~~l~~~~--g~i~lwd~~~~------~~~~~~~------  196 (612)
                      .+|.-..         .....++......|+.++|.|  -|-.||+++  |.++||+.-..      .+..++.      
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9997521         123455677788999999998  466778777  99999986432      2222222      


Q ss_pred             -cCCCCEEEEEEeeC---CcEEEEEEcCC-----CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE
Q 007234          197 -GHPGAVRFMTFSDN---GKYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV  267 (612)
Q Consensus       197 -~h~~~v~~l~~sp~---~~~l~s~s~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (612)
                       .+..+..|+.|+|.   ..+|+.++ .+     +.++||........ ...+..+..+...+..++|.+... ..-+.|
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r~y~~l  242 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-RSYHLL  242 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-CceeeE
Confidence             46677889999974   35677765 33     37889987665422 223445556666777778874321 234679


Q ss_pred             EEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec
Q 007234          268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV  347 (612)
Q Consensus       268 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~  347 (612)
                      ++++.|| |+||.+.....--         .......|+.-.                 +         ........+..
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i---------~~ee~~~~~~~~-----------------~---------l~v~~vs~~~~  286 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAI---------EEEEVLAPDLMT-----------------D---------LPVEKVSELDD  286 (361)
T ss_pred             EEeecCc-EEEEEEeeccchh---------hhhcccCCCCcc-----------------c---------cceEEeeeccC
Confidence            9999999 9999875432100         000000111110                 0         11122334567


Q ss_pred             cCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       348 h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      |.++|+.+.|..-|..| .|.|+||.+|+|..
T Consensus       287 H~~~VWrv~wNmtGtiL-sStGdDG~VRLWka  317 (361)
T KOG2445|consen  287 HNGEVWRVRWNMTGTIL-SSTGDDGCVRLWKA  317 (361)
T ss_pred             CCCceEEEEEeeeeeEE-eecCCCceeeehhh
Confidence            99999999999999999 99999999999965

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=7.4e-18  Score=163.34  Aligned_cols=285  Identities=13%  Similarity=0.112  Sum_probs=201.8

Q ss_pred             CCcccceeEEEEcCCCC--EEEEEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPALD--YFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~--~las~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      ++..|.++  +|+|..+  ++|+|..-|+|-+||+.+.+    -+..|..|+.+|.++.|++.                 
T Consensus       185 ~~~Rit~l--~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-----------------  245 (498)
T KOG4328|consen  185 TDRRITSL--AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-----------------  245 (498)
T ss_pred             cccceEEE--EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-----------------
Confidence            45667544  9999764  78888889999999995222    34456666666666666554                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEE--EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-e
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-L  152 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~  152 (612)
                       +        ...+++.+.||+|++-|++.+...  ..+ ..-.....++.|+.+...++.+..=|...+||.+++.. .
T Consensus       246 -n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  246 -N--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             -C--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence             3        567999999999999999876532  222 12345677888988888888888778999999998765 5


Q ss_pred             EEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      ..+.-|...|.+++++|... +|++++  ++.+|||++....    +.....|...|.+..|||++-.|++.+ .|..|+
T Consensus       316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IR  394 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIR  394 (498)
T ss_pred             hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceE
Confidence            56677888999999999765 566676  8999999986432    233356999999999999888899887 799999


Q ss_pred             EEEcC---CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc-cCCceeEeeccc
Q 007234          226 LWRTD---GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSED  301 (612)
Q Consensus       226 vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~  301 (612)
                      |||..   ...+    ....+.|....-..+.--...|.|+..++++|..-..|-|||...++.+.. +.|....+.+..
T Consensus       395 v~dss~~sa~~~----p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn  470 (498)
T KOG4328|consen  395 VFDSSCISAKDE----PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVN  470 (498)
T ss_pred             EeecccccccCC----ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccce
Confidence            99984   1111    123334443321111111223459999999999999999999999886655 566666777776


Q ss_pred             ccCCCCcccchhhhcccc-cceec
Q 007234          302 VNSKSQKSATAAIFAAKL-QDIVK  324 (612)
Q Consensus       302 ~~s~~~~~~~~~i~~~~~-d~~~~  324 (612)
                      .+-|...    .+++|+. .|.++
T Consensus       471 ~~HP~~~----~~~aG~~s~Gki~  490 (498)
T KOG4328|consen  471 EFHPMRD----TLAAGGNSSGKIY  490 (498)
T ss_pred             eeccccc----ceeccCCccceEE
Confidence            6667655    3444443 34443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=1.1e-17  Score=155.71  Aligned_cols=296  Identities=18%  Similarity=0.203  Sum_probs=198.6

Q ss_pred             cccceeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         4 ~~V~~l~~~fsp-----dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      .+|..+  +|++     .-+.+|++|. +++.+|+....--+..++...+             .......-.+.|.-...
T Consensus        39 ~~I~gv--~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D-------------~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   39 KPIFGV--AFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYAD-------------EDHDESFYTCSWSYDSN  102 (385)
T ss_pred             Ccccee--eeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccC-------------CCCCcceEEEEEEecCC
Confidence            567555  8875     2346666664 5789998754332222221111             11122333455654432


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEE--
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF--  155 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~--  155 (612)
                      .     ++.++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. +++++||.|.+|++|++++..++..|  
T Consensus       103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence            1     1678999999999999999999998777 6899999999999965 67999999999999999999999886  


Q ss_pred             -ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-------------------------EE---EEecCCCCEEE
Q 007234          156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-------------------------MQ---KFSGHPGAVRF  204 (612)
Q Consensus       156 -~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-------------------------~~---~~~~h~~~v~~  204 (612)
                       .+|.+.|.++.|+++|.++++++  .+|++|++...+.                         +.   +-.-|..+|.|
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence             45888999999999999999998  8999999873211                         00   11246667777


Q ss_pred             EEEeeCCcEEEEEEcCCCeEEEEEcCC-Ccc-----cc---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCc
Q 007234          205 MTFSDNGKYVLSSAVGERYIALWRTDG-VKK-----QS---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d~~i~vwd~~~-~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~  275 (612)
                      +.|-  |.++++-+ -++.|..|.... .+.     ..   ......+.-+..   .++|-...+++-+++||.|...|.
T Consensus       257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c---~iWfirf~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC---DIWFIRFAFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc---ceEEEEEeecHHHHHHhhccCCCc
Confidence            7775  56888876 578999998722 111     00   111122222221   122222223478899999999999


Q ss_pred             EEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEE
Q 007234          276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL  355 (612)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l  355 (612)
                      +.+||++..+...     ......                                              ......|...
T Consensus       331 v~vwdL~~~ep~~-----~ttl~~----------------------------------------------s~~~~tVRQ~  359 (385)
T KOG1034|consen  331 VYVWDLDNNEPPK-----CTTLTH----------------------------------------------SKSGSTVRQT  359 (385)
T ss_pred             EEEEECCCCCCcc-----CceEEe----------------------------------------------ccccceeeee
Confidence            9999987665421     000000                                              0011257888


Q ss_pred             EecCCCceEeccccceeeecceee
Q 007234          356 NCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       356 ~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +||.||.+| +-..+|+++--|+.
T Consensus       360 sfS~dgs~l-v~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  360 SFSRDGSIL-VLVCDDGTVWRWDR  382 (385)
T ss_pred             eecccCcEE-EEEeCCCcEEEEEe
Confidence            899999999 66667999888875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=162.26  Aligned_cols=245  Identities=15%  Similarity=0.199  Sum_probs=186.4

Q ss_pred             CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ..||..  ++|.|+|. .+++++.-..+..||+.+.+..+.-.               +.|+.   -..+.-+...+.  
T Consensus       257 ~fPi~~--a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------~~g~e---~~~~e~FeVShd--  314 (514)
T KOG2055|consen  257 KFPIQK--AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------PYGVE---EKSMERFEVSHD--  314 (514)
T ss_pred             cCccce--eeecCCCceEEEecccceEEEEeeccccccccccC---------------CCCcc---cchhheeEecCC--
Confidence            357754  49999998 88889989999999999887654221               11111   111111211111  


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-  160 (612)
                          +++|++.+..|.|.+....+++.+..+.  -.+.|.+++|+.+++.|+.++.+|.|.+||++...+++.|..... 
T Consensus       315 ----~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v  388 (514)
T KOG2055|consen  315 ----SNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV  388 (514)
T ss_pred             ----CCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence                7899999999999999999999887763  568899999999999999999999999999999999999886443 


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCC------CeeEEEEecCCCCEEEEEEeeCCcEEEEEEc-CCCeEEEEEcCC
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG  231 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-~d~~i~vwd~~~  231 (612)
                      .-++++.+++|.++|+|+  |.|.|||.++      .+++..+..-...|+++.|+||++.|+.++. .+..+++-.+..
T Consensus       389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            446788889999999999  9999999653      4667777777788999999999998887653 245788877765


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      ...-+.  -.....+...++++.|+     |.|.+++.|..+|.+.+|.+.
T Consensus       469 ~TVFsN--fP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 CTVFSN--FPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeecc--CCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence            432110  00112344557888998     999999999999999999763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=2.9e-17  Score=160.33  Aligned_cols=287  Identities=13%  Similarity=0.165  Sum_probs=199.3

Q ss_pred             CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc--EEEEEcC
Q 007234           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVS  104 (612)
Q Consensus        27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~--I~vwd~~  104 (612)
                      ..+++||.........+..+..                ......+.|..          ..++++++..|.  +.+|.-.
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~   65 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKD   65 (673)
T ss_pred             CceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEeccc
Confidence            3689999987665554443322                12245566754          344777777666  7777643


Q ss_pred             CC--eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--Ce
Q 007234          105 AG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQ  180 (612)
Q Consensus       105 ~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~  180 (612)
                      ..  +.. .+.......-.|++......++++|+..++|++||++...+.+.+++|...|+++.++-...+||+++  |.
T Consensus        66 g~~~~Vp-~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd  144 (673)
T KOG4378|consen   66 GKTPEVP-RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD  144 (673)
T ss_pred             CCCCccc-eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc
Confidence            22  221 11111222344555555567899999999999999998888888999999999999999999999998  89


Q ss_pred             EEEEEcCCCeeEEEEecCCC-CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCc
Q 007234          181 LKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG  259 (612)
Q Consensus       181 i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (612)
                      |.|..+.++..-..|....+ .|.-+.|+|..+++++..+++|.|.+||+....+.   . .....+......+||++  
T Consensus       145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~-~~~~~HsAP~~gicfsp--  218 (673)
T KOG4378|consen  145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---F-HASEAHSAPCRGICFSP--  218 (673)
T ss_pred             EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---c-chhhhccCCcCcceecC--
Confidence            99999999988777864434 45588999999988877778999999999887644   1 22234555567788873  


Q ss_pred             cCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC
Q 007234          260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK  339 (612)
Q Consensus       260 ~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~  339 (612)
                        .+..+|++.+.|..|.+||.........+..... .... .|+++|.    ++++|...|       .++..+-....
T Consensus       219 --sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P-lstv-af~~~G~----~L~aG~s~G-------~~i~YD~R~~k  283 (673)
T KOG4378|consen  219 --SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP-LSTV-AFSECGT----YLCAGNSKG-------ELIAYDMRSTK  283 (673)
T ss_pred             --CccceEEEecccceEEEeecccccccceeeecCC-ccee-eecCCce----EEEeecCCc-------eEEEEecccCC
Confidence              3557788899999999999876544332221111 1111 2677776    777777744       44444445555


Q ss_pred             ceEEEeeccCCCeEEEEecCCC
Q 007234          340 PSFQKILVNSGEDINLNCSQDG  361 (612)
Q Consensus       340 ~~~~~~~~h~~~v~~l~~S~dg  361 (612)
                      .....+..|...|++++|-+.-
T Consensus       284 ~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  284 APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CCceEeeecccceeEEEeeecc
Confidence            5556777899999999998775

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.1e-18  Score=186.60  Aligned_cols=241  Identities=14%  Similarity=0.141  Sum_probs=183.6

Q ss_pred             ceeEEEEcCCCCE----EEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234            7 RDILTSFSPALDY----FAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         7 ~~l~~~fspdg~~----las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      +.|  +|.+.|..    ||.|..||.|.+||...-      ..+.+++.|.+.|..+-|++.                  
T Consensus        68 ~kL--~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------------  127 (1049)
T KOG0307|consen   68 NKL--AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------------  127 (1049)
T ss_pred             eee--eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------------
Confidence            445  89998875    888889999999998652      244556666666665555444                  


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEE
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                      .        ++++++|+.+|.|.|||+..-+..... ...-.+.|.+++|+.. ...|++++.+|.+.+||++..+++-.
T Consensus       128 q--------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~  199 (1049)
T KOG0307|consen  128 Q--------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK  199 (1049)
T ss_pred             C--------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc
Confidence            2        679999999999999999875543333 1224578999999874 34588999999999999999988888


Q ss_pred             EecCCC--CeeEEEECCCC-CEEEEeC-----CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeE
Q 007234          155 FRASTK--GISCMAVSSDG-KMLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYI  224 (612)
Q Consensus       155 ~~~~~~--~v~~l~~spdg-~~l~~~~-----g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i  224 (612)
                      +..+..  .+..++|+|++ ..+++++     -.|.+||++.. .+++.+.+|...|.++.|++.+ .++++++ .|+.|
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~i  278 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRI  278 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCe
Confidence            776554  57899999976 3455554     38999998854 5678889999999999999877 6777777 79999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .+|+.++++..     ..+......+.-+.|++    .+...+++++.||.|.||.+....
T Consensus       279 i~wN~~tgEvl-----~~~p~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  279 ICWNPNTGEVL-----GELPAQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEecCCCceEe-----eecCCCCcceeeeeecC----CCcchhhhheeccceeeeeeecCC
Confidence            99999998743     44444445555556652    455688999999999999987665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=2.4e-17  Score=153.48  Aligned_cols=237  Identities=12%  Similarity=0.173  Sum_probs=178.6

Q ss_pred             EEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           10 LTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        10 ~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      .|+|+-|    .-++|.||.-|.|+|.|+.++++...+.+|+..++.+-|.+.                          .
T Consensus        94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~--------------------------~  147 (385)
T KOG1034|consen   94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD--------------------------R  147 (385)
T ss_pred             EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------C
Confidence            3455543    248899999999999999999999999999999988887776                          1


Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE----------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----------  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~----------  153 (612)
                      .+++++|+.|..|++||+++..++..+-  .+|.+.|.++.|+++|.++++|+.|.++++|++...+...          
T Consensus       148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            6789999999999999999999986553  6899999999999999999999999999999997432110          


Q ss_pred             ------------------EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEc-CCC-------------eeEEEEecCC
Q 007234          154 ------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-SDH-------------KKMQKFSGHP  199 (612)
Q Consensus       154 ------------------~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~-~~~-------------~~~~~~~~h~  199 (612)
                                        +-..|...|-|+.|-  |.++++-+  +.|..|-. +-.             ..+.++.-..
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~  305 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM  305 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence                              111244555666665  57888766  89999976 211             1233444444


Q ss_pred             CCEEEEEE--eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234          200 GAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (612)
Q Consensus       200 ~~v~~l~~--sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~  277 (612)
                      ..|.-+.|  .|-++.|+.+. ..|.|.+||++..+... ............+.-.+|+     .||..|+..+.|++|.
T Consensus       306 c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  306 CDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTVW  378 (385)
T ss_pred             cceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCcc-CceEEeccccceeeeeeec-----ccCcEEEEEeCCCcEE
Confidence            55666655  46677888876 79999999999877541 1222222334556667777     9999999999999999


Q ss_pred             EEEC
Q 007234          278 IWYG  281 (612)
Q Consensus       278 iwd~  281 (612)
                      -||.
T Consensus       379 rwdr  382 (385)
T KOG1034|consen  379 RWDR  382 (385)
T ss_pred             EEEe
Confidence            9984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.6e-17  Score=151.57  Aligned_cols=189  Identities=22%  Similarity=0.319  Sum_probs=147.5

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +.+-..-++.+|++++.|..|.+|+.. |+.+..+......-...+.+++                           |++
T Consensus       191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF  242 (420)
T KOG2096|consen  191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF  242 (420)
T ss_pred             EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence            334666778899999999999999998 9988877643333232333333                           899


Q ss_pred             EEEEECCCcEEEEEcCC---CeE-----EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC----C---ceeE
Q 007234           89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----G---SLLG  153 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~---~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~----~---~~~~  153 (612)
                      +++++-.-+|+||.+--   |..     ..++ .+|.+.|..++|+++...+++.|.||++++||+.-    +   +.++
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk  321 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK  321 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence            99999999999999842   221     2233 68999999999999999999999999999999752    1   2222


Q ss_pred             EE----ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       154 ~~----~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      +.    ....+....++++|+|+.||.+. ..+++|..++++...++ ..|...|.+++|+++|++++++|  |+.++++
T Consensus       322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~  399 (420)
T KOG2096|consen  322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI  399 (420)
T ss_pred             cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence            22    11223345899999999999998 69999999999877666 46899999999999999999985  8999987


Q ss_pred             E
Q 007234          228 R  228 (612)
Q Consensus       228 d  228 (612)
                      .
T Consensus       400 ~  400 (420)
T KOG2096|consen  400 R  400 (420)
T ss_pred             c
Confidence            6

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=9.2e-17  Score=155.37  Aligned_cols=208  Identities=14%  Similarity=0.136  Sum_probs=159.6

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE---E-----------------EeccCCCCCeEEEEEe
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---W-----------------RLSDCHPGGVSAISFA  126 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~---~-----------------~~~~~h~~~V~~l~~s  126 (612)
                      ..-|+.|.....+.  ...++++|+|+.+-.|.|||+.--..+   .                 ....+|+..|.+++|+
T Consensus       175 fPLC~ewld~~~~~--~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKS--GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cchhhhhhhcCCCC--CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            34577786652111  112889999999999999998532110   0                 0113689999999998


Q ss_pred             cCC-CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCE
Q 007234          127 THG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV  202 (612)
Q Consensus       127 p~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v  202 (612)
                      ..- +.|++||.|.+|++||+.+|++..++..|...|.++.|+|. ..+|++|+  +++.+.|.+.......-..-.+.|
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V  332 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV  332 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence            754 46999999999999999999999999999999999999985 56788888  999999998533222222346778


Q ss_pred             EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       203 ~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      -.++|.|.....+.++..||+++-+|++....    +++++..|...+++++++.    ....++++++.|+.+++|++.
T Consensus       333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             EEEEecCCCceeEEEecCCceEEeeecCCCCC----ceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEeec
Confidence            99999998776555556899999999998752    5788887888888888873    456789999999999999975


Q ss_pred             Cc
Q 007234          283 NI  284 (612)
Q Consensus       283 ~~  284 (612)
                      ..
T Consensus       405 ~~  406 (463)
T KOG0270|consen  405 VD  406 (463)
T ss_pred             CC
Confidence            44

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.75  E-value=4.6e-17  Score=163.77  Aligned_cols=246  Identities=15%  Similarity=0.192  Sum_probs=175.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--eeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |-.+|-++  .|-|-...|++++.|.++++||+.++++...  +.+|.+.+.+.+|.+.                  +  
T Consensus        99 H~nAifDl--~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~------------------n--  156 (720)
T KOG0321|consen   99 HKNAIFDL--KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT------------------N--  156 (720)
T ss_pred             ccceeEee--ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC------------------C--
Confidence            34566555  9999566889999999999999999998877  8899988888888776                  1  


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEE------------------------EE--eccCCCCCeEE---EEEecCCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK------------------------WR--LSDCHPGGVSA---ISFATHGS  130 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------------------------~~--~~~~h~~~V~~---l~~sp~~~  130 (612)
                            ...+++|+.||.|.|||++....-                        .+  -..+|...|.+   +-+..|..
T Consensus       157 ------~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~  230 (720)
T KOG0321|consen  157 ------PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES  230 (720)
T ss_pred             ------CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence                  567999999999999999643200                        00  00234445555   55667888


Q ss_pred             EEEEEec-CCcEEEEECCCCceeEE--------EecC---CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--eEEE
Q 007234          131 CIYSAGA-DGMVCEIDPLTGSLLGK--------FRAS---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQK  194 (612)
Q Consensus       131 ~l~s~s~-dg~v~iwd~~~~~~~~~--------~~~~---~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~  194 (612)
                      .|+++|. |+.|++||++.......        +..+   ...+.++.....|.+|++.+  +.|++||+.+-.  ++..
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~  310 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE  310 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence            9999997 99999999987543222        2223   23688888888888887665  999999997643  3555


Q ss_pred             EecCCCCE--EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          195 FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       195 ~~~h~~~v--~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      +.++...-  ..-..+|++.++++++ .|...++|.+...+..   ..... .+..-+.++++.+.   +. .-+++++.
T Consensus       311 ~sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~---~~~l~-Ght~eVt~V~w~pS---~~-t~v~TcSd  381 (720)
T KOG0321|consen  311 FSGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAP---PALLL-GHTREVTTVRWLPS---AT-TPVATCSD  381 (720)
T ss_pred             ccCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCC---hhhhh-CcceEEEEEeeccc---cC-CCceeecc
Confidence            55543221  1224689999999987 6999999999987654   22333 34444455666532   33 33677799


Q ss_pred             CCcEEEEECCCc
Q 007234          273 TGVCYIWYGQNI  284 (612)
Q Consensus       273 dg~i~iwd~~~~  284 (612)
                      |.++++|++..+
T Consensus       382 D~~~kiW~l~~~  393 (720)
T KOG0321|consen  382 DFRVKIWRLSNG  393 (720)
T ss_pred             CcceEEEeccCc
Confidence            999999998655

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.4e-18  Score=182.17  Aligned_cols=245  Identities=16%  Similarity=0.172  Sum_probs=179.5

Q ss_pred             ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC---Ce---EEEEeccCCCCCeEEEEEecCCC-EEEEEec
Q 007234           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGA  137 (612)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~---~~---~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~  137 (612)
                      ...+..+.|.+...+.     ..+|+.|..||.|.+||...   +.   .+.+. ..|.+.|.++.|++... .|++|+.
T Consensus        64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~  137 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGAD  137 (1049)
T ss_pred             cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCC
Confidence            4567788998775321     24799999999999999875   22   22233 57999999999999554 8999999


Q ss_pred             CCcEEEEECCCCceeEEEe--cCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCC--CEEEEEEeeC
Q 007234          138 DGMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDN  210 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~  210 (612)
                      ||.|.+||+...+.-....  ...+.|.+++|+.. ..+|++++  |.+.|||++..+.+-.+..|.+  .+..+.|+|+
T Consensus       138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence            9999999998765544442  13458999999875 45566666  8999999999988888876655  4678999998


Q ss_pred             Cc-EEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          211 GK-YVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       211 ~~-~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      +. .+++++..|+  .|.+||++.....    ...+.+|...+-.+.|+    ..|.+++++++.|++|.+|+.++++.+
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP----~k~~~~H~~GilslsWc----~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSP----LKILEGHQRGILSLSWC----PQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCc----hhhhcccccceeeeccC----CCCchhhhcccCCCCeeEecCCCceEe
Confidence            74 4555553344  7999999876533    33444455444455555    156699999999999999999999999


Q ss_pred             cccCCceeEeecccccCCCCcccchhhhcccccceecCCC
Q 007234          288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (612)
Q Consensus       288 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~  327 (612)
                      ..+.. ...+.....|+|....   .+++++++|.+.++.
T Consensus       290 ~~~p~-~~nW~fdv~w~pr~P~---~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  290 GELPA-QGNWCFDVQWCPRNPS---VMAAASFDGKISIYS  325 (1049)
T ss_pred             eecCC-CCcceeeeeecCCCcc---hhhhheeccceeeee
Confidence            87766 3334444446666542   888899998776654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=9.9e-17  Score=150.33  Aligned_cols=278  Identities=12%  Similarity=0.148  Sum_probs=185.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEE--EecCC-C
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST-K  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~-~  160 (612)
                      ...++++..+|.|++||..+++.+..+ .++...++.+.|..  ....+.+|+.||+|++||+++......  +..+. .
T Consensus        40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            467999999999999999999988777 67999999999977  456699999999999999998754443  44444 4


Q ss_pred             CeeEEEECCCCCEEEEeC------CeEEEEEcCCCee-EEEE-ecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCC
Q 007234          161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~-~~~~-~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~  231 (612)
                      +..|++..-.++++++|.      -.+.+||++..+. ++.+ ..|...|+++.|+|... .|++++ -||.|.+||+..
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vDGLvnlfD~~~  197 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VDGLVNLFDTKK  197 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-ccceEEeeecCC
Confidence            788888887888999887      3799999998765 5544 68999999999999765 555555 799999999987


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEe-------ec---cc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-------SS---ED  301 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~---~~  301 (612)
                      .....+ ....+ .....+..+.|.    ++.-+.|.+-+..+...+|+++.+.............       .+   ..
T Consensus       198 d~EeDa-L~~vi-N~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~  271 (376)
T KOG1188|consen  198 DNEEDA-LLHVI-NHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN  271 (376)
T ss_pred             Ccchhh-HHHhh-cccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence            643311 11222 333444555554    1443578999999999999998886443222211100       00   00


Q ss_pred             ccCCCCcccchhhhcccccceecCCCceEEEEe----CCccCceEEEeec-cCCCeEEEEecCCCceEeccccceeeecc
Q 007234          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY----GLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (612)
Q Consensus       302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~----g~~~~~~~~~~~~-h~~~v~~l~~S~dg~~l~~s~s~d~~~~~  376 (612)
                      ..+|.... . ..+++...+     .+.++...    |+... ....+.+ |..-|..+.|...+.++ .||+.|+.+.+
T Consensus       272 ~~~~~~~~-~-~~l~g~~~n-----~~~~~~~~~~~s~~~~~-~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~  342 (376)
T KOG1188|consen  272 EHSPGDKD-T-CALAGTDSN-----KGTIFPLVDTSSGSLLT-EPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQA  342 (376)
T ss_pred             cccCCCcc-e-EEEeccccC-----ceeEEEeeecccccccC-ccccccCCcHHHHHHHhhhccccee-eccCCCceEEE
Confidence            01121111 1 111111111     12222211    11111 1223444 55557888888899999 99999999999


Q ss_pred             eeee
Q 007234          377 RYVQ  380 (612)
Q Consensus       377 w~~~  380 (612)
                      |..+
T Consensus       343 Wk~~  346 (376)
T KOG1188|consen  343 WKVE  346 (376)
T ss_pred             EecC
Confidence            9863

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=3.9e-17  Score=159.45  Aligned_cols=214  Identities=14%  Similarity=0.160  Sum_probs=171.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      |++......|+++|+..+.|+|||++...+.+.+++|.+.|.+..|...                           +.+|
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------------------Deyi  136 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------------------DEYI  136 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------------------ccee
Confidence            4455555689999999999999999977778888888777776666655                           7899


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEE-ecCCCCeeEEEE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAV  167 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~  167 (612)
                      ++++..|+|.|..+.++.....+..+....|.-+.|+|..+. |.+++.+|.|.+||+....++..+ +.|..+...|+|
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF  216 (673)
T ss_pred             EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence            999999999999999998876665555567789999997765 678899999999999877776664 568889999999


Q ss_pred             CCCCCEEE-EeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec
Q 007234          168 SSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (612)
Q Consensus       168 spdg~~l~-~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (612)
                      +|....|+ +.+  ..|.+||.+..+....+. -..|...++|+++|.+|+.+. ..|.|..||++..+..    +....
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P----v~v~s  290 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP----VAVRS  290 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC----ceEee
Confidence            99766554 444  799999999877766664 456789999999999999887 5899999999987644    34444


Q ss_pred             CCceeEEeEEec
Q 007234          245 HPAVFMDCRCID  256 (612)
Q Consensus       245 ~~~~~~~~~~~~  256 (612)
                      .+...+.+++|.
T Consensus       291 ah~~sVt~vafq  302 (673)
T KOG4378|consen  291 AHDASVTRVAFQ  302 (673)
T ss_pred             ecccceeEEEee
Confidence            455557777775

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=1.2e-14  Score=152.10  Aligned_cols=323  Identities=20%  Similarity=0.289  Sum_probs=216.3

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ...|.  ++.|++++..++.++.|+.+.+|+...+. ....+.....                 .....+.+...+    
T Consensus        65 ~~~i~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----  121 (466)
T COG2319          65 EDSIT--SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALSSPD----  121 (466)
T ss_pred             cceEE--EEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEECCC----
Confidence            34564  44999999999999999999999998887 5555543221                 111222221111    


Q ss_pred             cccCCc-EEEEEEC-CCcEEEEEcCC-CeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEec
Q 007234           82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        82 ~~~~~~-~l~~gs~-~g~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~  157 (612)
                          +. .++..+. ++.+.+|+... ......+ ..|...|.+++|+|+++.+++++. |+.+++|+...+..+..+..
T Consensus       122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence                33 3444344 88999999998 5555444 579999999999999998888885 99999999999899999999


Q ss_pred             CCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       158 ~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      |...+.+++|+|++. .+++++  +.|++||...+..+. .+.+|.... ...|+|++.++++++ .|+.+++|++....
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~  274 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS  274 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence            999999999999998 555534  899999999888887 688898885 448999998777666 79999999998776


Q ss_pred             cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC--CceeEeecccccCCCCcccc
Q 007234          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT  311 (612)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~  311 (612)
                      ..    ......+...+....+.     |++..+++++.|+.+.+|+..+........  .....+.... +.+++.   
T Consensus       275 ~~----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---  341 (466)
T COG2319         275 SL----LRTLSGHSSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS---  341 (466)
T ss_pred             cE----EEEEecCCccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence            41    11112334455555776     788888889889999999988776544332  1111111111 111111   


Q ss_pred             hhhhcc-cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecc-ccceeeecceeee
Q 007234          312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQ  380 (612)
Q Consensus       312 ~~i~~~-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s-~s~d~~~~~w~~~  380 (612)
                       .+..+ ..++.+..++        ............+. .+..+.+++ .... ++ ++.++.+.+|+..
T Consensus       342 -~~~~~~~~d~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  400 (466)
T COG2319         342 -LLVSGGSDDGTIRLWD--------LRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLS  400 (466)
T ss_pred             -EEEEeecCCCcEEeee--------cCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEecc
Confidence             22222 2222222211        11111111222222 278888888 5333 44 6888999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=1.8e-14  Score=150.88  Aligned_cols=321  Identities=21%  Similarity=0.308  Sum_probs=217.9

Q ss_pred             ccceeEEEEcCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         5 ~V~~l~~~fspdg~-~las~s~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+..+.+. ++++. +++..+. |+.+.+||... ......+..|...+..+.|++.                       
T Consensus       111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  166 (466)
T COG2319         111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-----------------------  166 (466)
T ss_pred             ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence            45556445 88888 5555455 99999999988 7777778777766665555555                       


Q ss_pred             cccCCcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeE-EEecC
Q 007234           82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS  158 (612)
Q Consensus        82 ~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~-~~~~~  158 (612)
                          +..++.++. ++.+++|++..+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+.... .+..|
T Consensus       167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence                556777775 999999999997777555 46999999999999998 56666899999999998888887 67777


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .... ...|+|++..+++++  +.+++|+...... +..+.+|...+.++.|.|++..+++++ .|+.+.+|+.......
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~  319 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL  319 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence            7765 448999998888776  8999999987664 555578899999999999888888866 6788999988877643


Q ss_pred             cceeeEe-ecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234          236 SASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      .   ... ..+.. .+..+.+.     +++..++.+ ..|+.+.+|+............... ..... +.+ ..    .
T Consensus       320 ~---~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~----~  383 (466)
T COG2319         320 S---SLTLKGHEG-PVSSLSFS-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS-FSP-DG----R  383 (466)
T ss_pred             E---EeeecccCC-ceEEEEEC-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEE-ECC-CC----C
Confidence            1   111 12333 33344443     344555555 6789999999887762222221111 11111 122 11    1


Q ss_pred             hhc-ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          314 IFA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       314 i~~-~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      +.. +..++.+..|+       -. ..........+...+..+.+++++..+ ++++.+.+++.|+...
T Consensus       384 ~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  443 (466)
T COG2319         384 VVSSGSTDGTVRLWD-------LS-TGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEEecCCCceEEEe-------cc-cCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEeccC
Confidence            111 22222222222       11 111111222221578899999999999 8888899999998743

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=2.2e-16  Score=159.17  Aligned_cols=270  Identities=14%  Similarity=0.181  Sum_probs=198.6

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      .-|..+  +|-|||..|+.+. +.++.|||+..|..++++++|...|.+++|+++                         
T Consensus        13 hci~d~--afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~d-------------------------   64 (1081)
T KOG1538|consen   13 HCINDI--AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-------------------------   64 (1081)
T ss_pred             cchhee--EECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccC-------------------------
Confidence            356677  9999999888776 447999999999999999999999998888888                         


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                        |..+++|+.|..|.+|+..-...+ +  ..|...|.|+.|+|-...|++|+... .-+|.... +.+.+.+ ....+.
T Consensus        65 --GkrFASG~aDK~VI~W~~klEG~L-k--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q-K~V~K~k-ss~R~~  136 (1081)
T KOG1538|consen   65 --GKRFASGSADKSVIIWTSKLEGIL-K--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ-KSVSKHK-SSSRII  136 (1081)
T ss_pred             --CceeccCCCceeEEEeccccccee-e--eccCCeeeEeecCchHHHhhhcchhh-ccccChhh-hhHHhhh-hheeEE
Confidence              999999999999999997654433 2  35999999999999999999997543 56777543 2233322 234788


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCC-----cEEEEEEcCCCeEEEEEcCCCc
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNG-----KYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~-----~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +++|..||.+++.|-  |+|.+-+- +++..-.+   -|..++|.+++|+|..     ..+++.. +..++..+.+....
T Consensus       137 ~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  137 CCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQLSGKQ  214 (1081)
T ss_pred             EeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEeccee
Confidence            999999999999997  89988864 44433333   3577899999999853     3455554 78888888876543


Q ss_pred             cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      ..   ....+....   .++.+-     ++|.+++.|+.|+.+++|.-+ |-.+.                         
T Consensus       215 Ig---k~r~L~FdP---~CisYf-----~NGEy~LiGGsdk~L~~fTR~-GvrLG-------------------------  257 (1081)
T KOG1538|consen  215 IG---KDRALNFDP---CCISYF-----TNGEYILLGGSDKQLSLFTRD-GVRLG-------------------------  257 (1081)
T ss_pred             ec---ccccCCCCc---hhheec-----cCCcEEEEccCCCceEEEeec-CeEEe-------------------------
Confidence            21   011222222   233333     899999999999999998421 11110                         


Q ss_pred             hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                    ++......||++...|++++. +-|..||++.-+++
T Consensus       258 ------------------------------Tvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  258 ------------------------------TVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNL  292 (1081)
T ss_pred             ------------------------------eccccceeEEEEEEccCCceE-EEEEccCeeehhhh
Confidence                                          111122378999999999999 88889999988876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=7.7e-16  Score=146.25  Aligned_cols=305  Identities=12%  Similarity=0.086  Sum_probs=205.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      .+-|++|  .||.+|++||+|+.|..+++|++...      +.+....                 .|....+.|+.|...
T Consensus        56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-----------------~~H~SNIF~L~F~~~  116 (609)
T KOG4227|consen   56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-----------------HPHRSNIFSLEFDLE  116 (609)
T ss_pred             cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-----------------CccccceEEEEEccC
Confidence            4567666  99999999999999999999998643      2222221                 111244556666554


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeE-
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLG-  153 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~-  153 (612)
                               +.++++|..+|+|...|+++.+.+..+.. ...+.|+.+..+|..+.|++.+.++.|.+||.+..+ ... 
T Consensus       117 ---------N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  117 ---------NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             ---------CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence                     67899999999999999999988765531 123589999999998999999999999999998665 222 


Q ss_pred             -EEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee-EEE------EecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234          154 -KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQK------FSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (612)
Q Consensus       154 -~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~-~~~------~~~h~~~v~~l~~sp~~~~l~s~s~~d~  222 (612)
                       ........+.++.|+|... +|++.+  +-+-+||.+..+. +..      ++.....-.+..|+|+|+.|++.- ...
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~  266 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGK  266 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccC
Confidence             2233445788999999664 555555  7899999876532 211      222122335678999999988764 344


Q ss_pred             eEEEEEcCCCccccceeeEeecCCc-e-----eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPA-V-----FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~  296 (612)
                      .-.+||+-...+.    ++...|.. .     .+..++|      -+...+++|+.+=.|++|.+.....-..+...   
T Consensus       267 ~P~~~D~~S~R~~----V~k~D~N~~GY~N~~T~KS~~F------~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~I---  333 (609)
T KOG4227|consen  267 CPLYFDFISQRCF----VLKSDHNPNGYCNIKTIKSMTF------IDDYTVATGSDHWGIHIWKLPRANDSYGFTQI---  333 (609)
T ss_pred             CCEEeeeecccce----eEeccCCCCcceeeeeeeeeee------ecceeeeccCcccceEEEecCCCccccCcccc---
Confidence            4567888775543    45555433 2     2334455      34466999999999999986544332211100   


Q ss_pred             eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecc
Q 007234          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (612)
Q Consensus       297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~  376 (612)
                                +.          .+. .        ....-.....+-.+.+|..-+..+.|+|-..+| +|.+..+++++
T Consensus       334 ----------G~----------~~~-~--------~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~Kl  383 (609)
T KOG4227|consen  334 ----------GH----------DEE-E--------MPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKL  383 (609)
T ss_pred             ----------Cc----------chh-h--------CchhheecceeEEEecccccccceeecCCcceE-eccchhhheec
Confidence                      00          000 0        000001123344678999999999999999998 89889999999


Q ss_pred             eee
Q 007234          377 RYV  379 (612)
Q Consensus       377 w~~  379 (612)
                      |.-
T Consensus       384 WS~  386 (609)
T KOG4227|consen  384 WSD  386 (609)
T ss_pred             ccc
Confidence            964

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=2.3e-16  Score=150.27  Aligned_cols=208  Identities=17%  Similarity=0.265  Sum_probs=162.4

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      |.++|  |-++|+| +.+.+|+||.|.+|.||.+-.+.....+.   .++..       +.|| ...+..+.|.+.-   
T Consensus        80 Ht~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---epvv~-------L~gH-~rrVg~V~wHPtA---  143 (472)
T KOG0303|consen   80 HTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---EPVVE-------LYGH-QRRVGLVQWHPTA---  143 (472)
T ss_pred             ccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcc---cceEE-------Eeec-ceeEEEEeecccc---
Confidence            56788  5559999 56789999999999999987665433322   11110       2233 2355677888776   


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                           .+.|++++.|..|.+||+.+|+.+.++.  |...|++++|+.||.+|++++.|..|++||.++++.+..-.+|.+
T Consensus       144 -----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  144 -----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             -----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence                 6789999999999999999999887763  999999999999999999999999999999999999998877776


Q ss_pred             -CeeEEEECCCCCEEEEeC-----CeEEEEEcCCCe---eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          161 -GISCMAVSSDGKMLATAA-----GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       161 -~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                       ....+.|-.+|.++.+|-     ..+-+||..+-+   ...++. ..+.|.---|.+|.+.++.+|-+|+.|+.|.+..
T Consensus       217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence             556677888899555554     489999976543   344554 3455666677899999998988999999999887


Q ss_pred             Cc
Q 007234          232 VK  233 (612)
Q Consensus       232 ~~  233 (612)
                      ..
T Consensus       296 d~  297 (472)
T KOG0303|consen  296 EP  297 (472)
T ss_pred             CC
Confidence            65

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=1.6e-15  Score=139.07  Aligned_cols=259  Identities=14%  Similarity=0.109  Sum_probs=177.6

Q ss_pred             CcEEEEEECCC-------cEEEEEcCCC---------eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC
Q 007234           86 SSLLVLGTGGG-------DVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        86 ~~~l~~gs~~g-------~I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~  149 (612)
                      ..+++++..+-       .+.||.+...         +++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus        76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es  154 (370)
T KOG1007|consen   76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES  154 (370)
T ss_pred             CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence            45566655421       2679988643         233344335667999999999999888775 889999999877


Q ss_pred             ce-eEEEec-----CCCCeeEEEECC--CCCEEEEeC-CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       150 ~~-~~~~~~-----~~~~v~~l~~sp--dg~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      .. +..+..     +....++-+|+|  ||+.+++.+ +++..||+++.+....+ ..|...|..+.|+|+.+++++++.
T Consensus       155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g  234 (370)
T KOG1007|consen  155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG  234 (370)
T ss_pred             cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence            55 333322     344678889998  889999888 89999999998776655 578889999999999886555555


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (612)
                      +||.|++||.+..+..    ++.+..+.-.+-++-|.+    .-.+++++++.|..|.+|...+...-..+.......- 
T Consensus       235 DdgyvriWD~R~tk~p----v~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese-  305 (370)
T KOG1007|consen  235 DDGYVRIWDTRKTKFP----VQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE-  305 (370)
T ss_pred             CCccEEEEeccCCCcc----ccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccccccccccc-
Confidence            8999999999987643    566666666666666762    3357899999999999998644321100000000000 


Q ss_pred             ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                          .++..         +.   .+    ...     ......++...|...|.+++||.-..++++|-|.||.+.+-++
T Consensus       306 ----~e~~d---------se---er----~kp-----L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  306 ----SEDED---------SE---ER----VKP-----LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ----Ccchh---------hH---Hh----ccc-----ccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence                00000         00   00    000     1123455777899999999999999999899999999877665

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.71  E-value=1.6e-15  Score=145.30  Aligned_cols=157  Identities=15%  Similarity=0.241  Sum_probs=125.5

Q ss_pred             CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCc---------EEEEeeccCCccccccccccccccccccceeEEE
Q 007234            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQ---------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMK   72 (612)
Q Consensus         3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~   72 (612)
                      ..||.++  .|.+++. .||+|+.|..|+||-+..+.         ....+..|...++.+.|+++              
T Consensus        13 ~~pv~s~--dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--------------   76 (434)
T KOG1009|consen   13 HEPVYSV--DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--------------   76 (434)
T ss_pred             CCceEEE--EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--------------
Confidence            3577555  9999876 99999999999999775332         23344555555555555555              


Q ss_pred             eeecccccccccCCcEEEEEECCCcEEEEEcC--------C-----C--eEEEEeccCCCCCeEEEEEecCCCEEEEEec
Q 007234           73 WLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS--------A-----G--QLKWRLSDCHPGGVSAISFATHGSCIYSAGA  137 (612)
Q Consensus        73 w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~--------~-----~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~  137 (612)
                                   ++++++|+.+|.|.+|-..        +     .  -.++....+|...|..++|+|++.++++++.
T Consensus        77 -------------gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~  143 (434)
T KOG1009|consen   77 -------------GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV  143 (434)
T ss_pred             -------------cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence                         8999999999999999876        2     1  1334555789999999999999999999999


Q ss_pred             CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC
Q 007234          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~  188 (612)
                      |..+++||+..|+....+..|..-+..++|.|-++++++-+  ...+.++...
T Consensus       144 dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  144 DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            99999999999999999999999999999999999998866  3455555443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=1.1e-14  Score=148.34  Aligned_cols=225  Identities=16%  Similarity=0.242  Sum_probs=143.8

Q ss_pred             EEEeCCCcEEEEECCC-Cc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE-CCC
Q 007234           21 AICSGDARIKIWDTLK-GQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-GGG   96 (612)
Q Consensus        21 as~s~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs-~~g   96 (612)
                      ++...++.|++||+.+ ++  .+..+.. .+....+.++++                           +++|++++ .++
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd---------------------------~~~lyv~~~~~~   57 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPD---------------------------KRHLYVGVRPEF   57 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCC---------------------------CCEEEEEECCCC
Confidence            3446689999999964 43  3444431 222233333333                           66776665 467


Q ss_pred             cEEEEEcC-CCeE--EEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCC-Cc---eeEEEecCCCCeeEEEEC
Q 007234           97 DVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GS---LLGKFRASTKGISCMAVS  168 (612)
Q Consensus        97 ~I~vwd~~-~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~-~~---~~~~~~~~~~~v~~l~~s  168 (612)
                      .|.+|++. ++..  ....  ...+....++|+|+++++++++. ++.|.+||+.+ +.   .+..+. +...+.+++++
T Consensus        58 ~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~  134 (330)
T PRK11028         58 RVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID  134 (330)
T ss_pred             cEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC
Confidence            79999997 3433  2222  13345678999999999888874 88999999864 32   223332 22356788999


Q ss_pred             CCCCEEEEeC---CeEEEEEcCCCeeEE-------EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          169 SDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       169 pdg~~l~~~~---g~i~lwd~~~~~~~~-------~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      |+|+++++++   +.|.+||+.+...+.       .... ......+.|+|+|++++++...++.|.+|+++..... ..
T Consensus       135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-~~  212 (330)
T PRK11028        135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-IE  212 (330)
T ss_pred             CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-EE
Confidence            9999998766   799999998643221       1111 2335689999999999888755899999999742111 01


Q ss_pred             eeEeec-CC-----ceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCC
Q 007234          239 CVLAME-HP-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (612)
Q Consensus       239 ~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~  283 (612)
                      .+.... .+     ......+.++     |++++++++.. ++.|.+|++..
T Consensus       213 ~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        213 CVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence            122211 11     1111234455     99999999865 78999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.70  E-value=1.4e-15  Score=145.00  Aligned_cols=207  Identities=17%  Similarity=0.228  Sum_probs=161.0

Q ss_pred             cccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE------EEeccCCCCCeEEEEEecC-CCEE
Q 007234           60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATH-GSCI  132 (612)
Q Consensus        60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~sp~-~~~l  132 (612)
                      .+||.. .+-.+.|.|++        ...|++|+.|.+|.||.+..+...      ...+.+|...|--+.|+|. .+.|
T Consensus        77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL  147 (472)
T KOG0303|consen   77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL  147 (472)
T ss_pred             ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence            345533 44567898887        889999999999999999765432      2334689999999999994 4579


Q ss_pred             EEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC-EEEEEEee
Q 007234          133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSD  209 (612)
Q Consensus       133 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp  209 (612)
                      ++++.|.+|.+||+.+|+.+-++. |..-|+++.|+.||.++++++  ..|+|||.++++.+.+-.+|.+. -....|-.
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence            999999999999999999988888 999999999999999999998  79999999999999988888763 44567888


Q ss_pred             CCcEEEEEEc---CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcc
Q 007234          210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE  285 (612)
Q Consensus       210 ~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~  285 (612)
                      +|. ++++|.   .++.+-+||...-+..  .....++....+ -.-++.     +|.+.+..++. |+.|+.|.+..-.
T Consensus       227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSnGv-l~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSNGV-LLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCCce-EEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence            888 566552   2678999998776543  133344433333 334444     88888777665 9999999976654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1.6e-16  Score=158.02  Aligned_cols=243  Identities=15%  Similarity=0.148  Sum_probs=180.7

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECC--------CCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTL--------KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      .-||.+  +|.|....|++++.||+|++|+++        .-+.+.+|.+|.++|.|.++...                 
T Consensus       295 d~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-----------------  355 (577)
T KOG0642|consen  295 DCIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-----------------  355 (577)
T ss_pred             hhhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-----------------
Confidence            456777  899999999999999999999993        22467889999999998888877                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCe---------EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                                +..+++|+-||+|+.|++..+.         .+...+.||++.|+.+++|+....|++|+.||+|+.|+.
T Consensus       356 ----------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  356 ----------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             ----------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence                      8899999999999999665221         233445799999999999999889999999999999998


Q ss_pred             CCCceeEEEecCC--CCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC-------CCCEEEEEEeeCCcEE
Q 007234          147 LTGSLLGKFRAST--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYV  214 (612)
Q Consensus       147 ~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l  214 (612)
                      ....+ .+|....  +-..++.+-.....+..++   +.--++++.....+..+...       ...+..+.++|.+.+.
T Consensus       426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~  504 (577)
T KOG0642|consen  426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT  504 (577)
T ss_pred             CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence            76655 4444322  2345666653332233333   33344455544444444321       1346778889999888


Q ss_pred             EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      +++. .|+.|+++|..+++..     .....+...+++.++.     |+|-+|++++.||.+.+|.+.....+
T Consensus       505 ~~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  505 FTAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             Eecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhee
Confidence            8775 8999999999998754     4445566667777787     99999999999999999987655544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=7.2e-16  Score=152.08  Aligned_cols=231  Identities=15%  Similarity=0.247  Sum_probs=167.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ||.|+.+...+.++ .|..+.+|+-.+........-....                 ..+.+.  +.....++..+...+
T Consensus        19 ~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df-----------------~pt~~h--~~~rs~~~g~~~d~~   78 (737)
T KOG1524|consen   19 CVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDF-----------------VPTDMH--LGGRSSGGGKGSDTL   78 (737)
T ss_pred             eecccccceEEEec-cCceEEEeecccchhhhhhhCCccc-----------------CCcccc--ccccccCCCCCcceE
Confidence            66788877766555 4666666654444433333211111                 111111  111111222236789


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp  169 (612)
                      +++++||.+.+.+-. ++....+ .+|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|
T Consensus        79 ~i~s~DGkf~il~k~-~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   79 LICSNDGRFVILNKS-ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             EEEcCCceEEEeccc-chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECC
Confidence            999999999888743 4443333 68999999999999999999999999999999 67776666666778999999999


Q ss_pred             CCCEEEEe-CCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCce
Q 007234          170 DGKMLATA-AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV  248 (612)
Q Consensus       170 dg~~l~~~-~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  248 (612)
                      +.+-++.+ ++.+.+=.+.....+-+.+.|.+-|.++.|+|....++++| +|-..++||.....      .+....+..
T Consensus       156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~------Lf~S~~~ey  228 (737)
T KOG1524|consen  156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN------LFTSAAEEY  228 (737)
T ss_pred             CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc------cccCChhcc
Confidence            87665555 48999888888777788899999999999999999999998 89999999987653      455667788


Q ss_pred             eEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234          249 FMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (612)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~  277 (612)
                      .++.++|.     |+ ..++.+|.. +++
T Consensus       229 ~ITSva~n-----pd-~~~~v~S~n-t~R  250 (737)
T KOG1524|consen  229 AITSVAFN-----PE-KDYLLWSYN-TAR  250 (737)
T ss_pred             ceeeeeec-----cc-cceeeeeee-eee
Confidence            88999997     88 556666553 444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=7.9e-16  Score=144.34  Aligned_cols=190  Identities=12%  Similarity=0.201  Sum_probs=144.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~   97 (612)
                      +.+|++...|.|++||..+|+.+..|+++...+..+.|...                  +       ....+.+|+.||.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------d-------s~h~v~s~ssDG~   95 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------D-------SPHGVISCSSDGT   95 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------C-------CCCeeEEeccCCe
Confidence            45888888999999999999999999988877776666543                  1       0677999999999


Q ss_pred             EEEEEcCCCeEEEEec-cCCC-CCeEEEEEecCCCEEEEEe----cCCcEEEEECCCCce-eEE-EecCCCCeeEEEECC
Q 007234           98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS  169 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~-~~h~-~~V~~l~~sp~~~~l~s~s----~dg~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~sp  169 (612)
                      |++||++......++. .+|. .+-.+++.+..++.+++|.    .|-.|.+||++..+. +.. ...|...|++++|+|
T Consensus        96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen   96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence            9999999876654443 3344 4567777766677777764    466899999998766 554 456888999999999


Q ss_pred             C-CCEEEEeC--CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCc
Q 007234          170 D-GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       170 d-g~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      . -++|++|+  |.|.+||++....   +...-.|...|.++.|..++ +.+.+-+ ...+..+|+++.+.
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~  245 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS  245 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence            4 57888888  9999999976522   22233577889999999887 2345544 68889999987664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.8e-14  Score=135.50  Aligned_cols=232  Identities=14%  Similarity=0.158  Sum_probs=171.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ..|+.|...|..|+.||. ++|+..........                  ......+.-+.|.           ..+++
T Consensus        11 ~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~------------------~~~~~~IvEmLFS-----------SSLva   60 (391)
T KOG2110|consen   11 IGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSK------------------DTEGVSIVEMLFS-----------SSLVA   60 (391)
T ss_pred             eeeccceeEEEccCCCce-eEEecCchHHhhcc------------------cCCCeEEEEeecc-----------cceeE
Confidence            379999999999999985 88887654331110                  0001112222222           45667


Q ss_pred             EEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC---CCCeeEE
Q 007234           91 LGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISCM  165 (612)
Q Consensus        91 ~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~v~~l  165 (612)
                      +.+.+..  +++++.+.+..+..+.  ....|.++.++.  +.|+++=. ..|++||+++-+.++++...   ..++.++
T Consensus        61 iV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   61 IVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             EEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEee
Confidence            6666443  8999999988887764  457799999964  46777754 44999999999999887653   3467777


Q ss_pred             EECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          166 AVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       166 ~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      ++++.+.+++.-+    |.|.+||+.+-+.+..+..|.+++.+++|+++|.+|++++.....|+|+.+.++++.   ..+
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl---~eF  212 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL---YEF  212 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe---eee
Confidence            7777778998654    899999999999999999999999999999999999999843335899999998754   223


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      ..+....-+..++|+     +++.+|++.+..++|++|.++...
T Consensus       213 RRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence            222233445556776     999999999999999999987655

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=144.17  Aligned_cols=190  Identities=14%  Similarity=0.183  Sum_probs=147.9

Q ss_pred             CcEEEEEECCCcEEEEEcCC----------------CeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCC
Q 007234           86 SSLLVLGTGGGDVLALAVSA----------------GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~----------------~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~  148 (612)
                      ..+.++-+..|.|+||++..                .+.+.++ .+|...=++++|||- ...|++|.--+.|++|...+
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc
Confidence            45667778889999999853                1234444 578888899999992 22488887788899999888


Q ss_pred             Ccee---EEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          149 GSLL---GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       149 ~~~~---~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      |.-.   ..|.+|...|..++|||..+ .+++++  |+|+|||++.+..  ....+.|.+.|+-|.|+..-.+|++++ .
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~-D  322 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG-D  322 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC-C
Confidence            7532   23667899999999999654 556666  9999999998822  223388999999999999888888887 7


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      ||+++|||++.-+..  .++..+..+...++++.|.+    .+...|++++.|.+|.+||+..
T Consensus       323 dGt~~iwDLR~~~~~--~pVA~fk~Hk~pItsieW~p----~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSG--QPVATFKYHKAPITSIEWHP----HEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceEEEEEhhhccCC--CcceeEEeccCCeeEEEecc----ccCceEEeccCCCcEEEEEeec
Confidence            999999999876543  35667777888888888873    3557788899999999999743

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=2.5e-15  Score=137.90  Aligned_cols=208  Identities=15%  Similarity=0.230  Sum_probs=153.6

Q ss_pred             cccceeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            4 SNIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         4 ~~V~~l~~~fspdg-----~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      =|++.+  -|.||.     ++||+++  ..+|+|.+...+......        ...+.. ...+.....|+..|...+ 
T Consensus        97 YP~tK~--~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~--------~~L~~~-kns~~~aPlTSFDWne~d-  162 (364)
T KOG0290|consen   97 YPVTKL--MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ--------SVLNNN-KNSEFCAPLTSFDWNEVD-  162 (364)
T ss_pred             CCccce--EecCCccccCcchhhccc--CeEEEEeccCcCCceehh--------hhhccC-cccccCCcccccccccCC-
Confidence            366667  899986     3677765  379999987432111111        001111 234556678899999887 


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEE
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                             .++|.+.+-|-+..|||++++..  +.+-+-+|...|.+++|...+ +.|+++|.||.||+||++..+.-..+
T Consensus       163 -------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII  235 (364)
T KOG0290|consen  163 -------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII  235 (364)
T ss_pred             -------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence                   67899999999999999999743  333335899999999999854 46899999999999999877554433


Q ss_pred             ec-C--CCCeeEEEECC-CCCEEEEeC---CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEE
Q 007234          156 RA-S--TKGISCMAVSS-DGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIAL  226 (612)
Q Consensus       156 ~~-~--~~~v~~l~~sp-dg~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~v  226 (612)
                      .. .  ..+...++|++ |-+++|+-.   ..|.+.|++.. .++.++.+|.+.|+.++|.|... .+.++| +|..+.+
T Consensus       236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qali  314 (364)
T KOG0290|consen  236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALI  314 (364)
T ss_pred             ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEE
Confidence            22 2  34788899987 446666544   79999999865 56899999999999999999654 677776 7999999


Q ss_pred             EEcCCCc
Q 007234          227 WRTDGVK  233 (612)
Q Consensus       227 wd~~~~~  233 (612)
                      ||+...-
T Consensus       315 WDl~q~~  321 (364)
T KOG0290|consen  315 WDLQQMP  321 (364)
T ss_pred             Eeccccc
Confidence            9997643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.2e-15  Score=150.61  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=170.1

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE--EEEEecCCcEEEEECCCC--------------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--IYSAGADGMVCEIDPLTG--------------  149 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~s~dg~v~iwd~~~~--------------  149 (612)
                      +..|++|+.||+|+||.+.+|.|++++.  ..+.|.|++|+|.+..  |+++ ...++.+.+..-|              
T Consensus       412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~  488 (733)
T KOG0650|consen  412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLAS  488 (733)
T ss_pred             cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhc
Confidence            8999999999999999999999998874  5578999999997654  4443 3333444432211              


Q ss_pred             -----------------------ceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCC
Q 007234          150 -----------------------SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGA  201 (612)
Q Consensus       150 -----------------------~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~  201 (612)
                                             .-++..-.|...|..+.|+..|.||++..     ..|.|+++...+...-|.-..+.
T Consensus       489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~  568 (733)
T KOG0650|consen  489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL  568 (733)
T ss_pred             CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCc
Confidence                                   00122223667899999999999999876     48999999877666666666778


Q ss_pred             EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       202 v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      |.++.|+|...+|++++  .+.|++||+......     ..+......++..+..     |.|..|+.++.|+.+..||+
T Consensus       569 vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv-----KkL~tg~kwiS~msih-----p~GDnli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  569 VQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV-----KKLLTGSKWISSMSIH-----PNGDNLILGSYDKKMCWFDL  636 (733)
T ss_pred             eeEEEecCCCceEEEEe--ccceEEEehhHHHHH-----HHHhcCCeeeeeeeec-----CCCCeEEEecCCCeeEEEEc
Confidence            99999999999999875  678999999886532     2333455566667776     99999999999999999997


Q ss_pred             CCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCC
Q 007234          282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG  361 (612)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg  361 (612)
                      .-...                                                      ..+++..|...+.+++|.+.-
T Consensus       637 dlssk------------------------------------------------------Pyk~lr~H~~avr~Va~H~ry  662 (733)
T KOG0650|consen  637 DLSSK------------------------------------------------------PYKTLRLHEKAVRSVAFHKRY  662 (733)
T ss_pred             ccCcc------------------------------------------------------hhHHhhhhhhhhhhhhhcccc
Confidence            54321                                                      012566788889999999988


Q ss_pred             ceEeccccceeeeccee
Q 007234          362 VLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       362 ~~l~~s~s~d~~~~~w~  378 (612)
                      .++ +|||+|+++.+.-
T Consensus       663 PLf-as~sdDgtv~Vfh  678 (733)
T KOG0650|consen  663 PLF-ASGSDDGTVIVFH  678 (733)
T ss_pred             cee-eeecCCCcEEEEe
Confidence            888 9999999998874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-14  Score=156.58  Aligned_cols=255  Identities=14%  Similarity=0.160  Sum_probs=162.6

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |++.|..+  +.++ ++.+|++||.||+|++||.+.-.      ++. ..-....|++.      .....++.....   
T Consensus      1047 hs~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~------~~~~s~rS~ltys~~------~sr~~~vt~~~~--- 1109 (1431)
T KOG1240|consen 1047 HSSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLE------GEGGSARSELTYSPE------GSRVEKVTMCGN--- 1109 (1431)
T ss_pred             ccccccce--eecCCCCceEEEecCCceEEEeeehhhh------cCcceeeeeEEEecc------CCceEEEEeccC---
Confidence            45666656  5555 55999999999999999986321      110 00011122211      122233332222   


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEE------EEeccC-CCCCeEEE-EEec-CCC-EEEEEecCCcEEEEECCCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDC-HPGGVSAI-SFAT-HGS-CIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------~~~~~~-h~~~V~~l-~~sp-~~~-~l~s~s~dg~v~iwd~~~~  149 (612)
                            ++.+|+++.||.|.+.++......      .+.... ..+.+.++ +|.. .+. .++.+...+.|..||+++.
T Consensus      1110 ------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1110 ------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred             ------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence                  788999999999999998762211      111111 23334433 3433 233 6777888899999999887


Q ss_pred             ceeEEEec--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeC---CcEEEEEEc-C
Q 007234          150 SLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-G  220 (612)
Q Consensus       150 ~~~~~~~~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~---~~~l~s~s~-~  220 (612)
                      .....++.  ..+.|++++.+|.+.+++.|.  |.+.+||++=+.++.... ++..++..+..+|-   ....+++++ .
T Consensus      1184 ~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred             hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence            66555443  356899999999999999998  999999999887776653 44577888777653   356666665 5


Q ss_pred             CCeEEEEEcCCCccccceeeEeec---------CCc--------eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          221 ERYIALWRTDGVKKQSASCVLAME---------HPA--------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      .+.|.+|++.++....   ++...         .+.        .......+.     ..+.++.+|+.|..|+.||...
T Consensus      1264 ~nevs~wn~~~g~~~~---vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQT---VLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             CCceeeeecccCcceE---EEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCC
Confidence            7789999999986441   11111         000        011112222     4567899999999999999776


Q ss_pred             ccee
Q 007234          284 IEEL  287 (612)
Q Consensus       284 ~~~~  287 (612)
                      .+..
T Consensus      1336 p~~s 1339 (1431)
T KOG1240|consen 1336 PEIS 1339 (1431)
T ss_pred             cccc
Confidence            5543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=3.8e-16  Score=155.45  Aligned_cols=248  Identities=17%  Similarity=0.186  Sum_probs=168.9

Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC--------CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEE
Q 007234          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT  183 (612)
Q Consensus       114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~l  183 (612)
                      ..|...|+.+.|+|....|++|+.||++++|+++.        -+++.+|++|.++|.|+++.+.+.++++|+  |+|+.
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            45888999999999999999999999999999932        267889999999999999999999999999  99999


Q ss_pred             EEcCCC----------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234          184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (612)
Q Consensus       184 wd~~~~----------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (612)
                      |++...          .....+.||...|+.+++|+....|++++ .||+++.|+......    +++...........+
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence            965421          23456789999999999999988999987 699999999877654    233333222233333


Q ss_pred             EecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee---cc---cccCCCCcccchhhhcccccceecCCC
Q 007234          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---SE---DVNSKSQKSATAAIFAAKLQDIVKPAS  327 (612)
Q Consensus       254 ~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~---~~~s~~~~~~~~~i~~~~~d~~~~~~~  327 (612)
                      .+.    +.+-.+.++...-+.-.+++.+.+..+...........   ..   .+.-|..    +..+++..+..++.+|
T Consensus       446 d~~----ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  446 DRT----SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITFTAHEDRSIRFFD  517 (577)
T ss_pred             eec----cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeEecccCCceeccc
Confidence            332    01112222222233333444444433332221111000   00   0011111    2555666666666655


Q ss_pred             ceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecce
Q 007234          328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRV  383 (612)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~  383 (612)
                              +...........|...+.++++.|+|-+| +++++|+++++|+...+.
T Consensus       518 --------n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  518 --------NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             --------ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccchh
Confidence                    33333334666788899999999999999 999999999999885543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=1.1e-14  Score=152.42  Aligned_cols=251  Identities=12%  Similarity=0.119  Sum_probs=179.5

Q ss_pred             CcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         3 s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +++|  .|++|+| +..++|.|+.+|+|.+||++.+...  ..+..              ........++.+.|..... 
T Consensus       242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------~~~sh~~~v~~vvW~~~~~-  304 (555)
T KOG1587|consen  242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------LEVSHSEPVTAVVWLQNEH-  304 (555)
T ss_pred             CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--------------ccccCCcCeEEEEEeccCC-
Confidence            4667  5669999 5577888888999999999877652  21111              1122355677888876422 


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEE------EEec-----cCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLS-----DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~------~~~~-----~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~  147 (612)
                            +.-+++++.||.|..|+++.-...      ....     ..-...+++++|.+ +-..|+.|+.+|.|..-+-.
T Consensus       305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence                  356889999999999988643221      0000     01234689999988 44569999999998874322


Q ss_pred             C---C-----ceeEEEecCCCCeeEEEECCCCCEEE-EeC-CeEEEEEcC-CCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234          148 T---G-----SLLGKFRASTKGISCMAVSSDGKMLA-TAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       148 ~---~-----~~~~~~~~~~~~v~~l~~spdg~~l~-~~~-g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s  216 (612)
                      .   +     +....+..|.++|+++.++|-+..++ +++ .+++||... ...++..+..+...|++++|||....++.
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence            2   2     12334566788999999999665444 444 799999988 66778888888888999999998877666


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      +...||.+.+||+......   ++....-...+...+.++     +.|+.|++|...|++++|++...
T Consensus       459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCch
Confidence            6668999999999876544   333333336666777776     88999999999999999998543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.8e-14  Score=127.85  Aligned_cols=226  Identities=13%  Similarity=0.187  Sum_probs=159.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCc----------EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +-++||.+++|+.|..+|.|.+..+.+-.          .+-.++.|.+++....|.                       
T Consensus        15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-----------------------   71 (325)
T KOG0649|consen   15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-----------------------   71 (325)
T ss_pred             HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-----------------------
Confidence            34899999999999999999999875321          222334455544443333                       


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeE------EEEe-ccCCC-----CCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRL-SDCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~------~~~~-~~~h~-----~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                            ..+++ .+.||.|+-|..+.-..      +++. ..-|.     -.|+++...|..+-++.++.|+.++.||++
T Consensus        72 ------d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE  144 (325)
T KOG0649|consen   72 ------DDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE  144 (325)
T ss_pred             ------hhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec
Confidence                  22344 44559999887754322      1111 11222     358899999988788888899999999999


Q ss_pred             CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC----------CCEEEEEEeeCCcEEE
Q 007234          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----------GAVRFMTFSDNGKYVL  215 (612)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~----------~~v~~l~~sp~~~~l~  215 (612)
                      +|+..+++++|.+-+.++.-......+++|+  |++++||.++++.+..+....          ..|.+++  -+..+++
T Consensus       145 ~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlv  222 (325)
T KOG0649|consen  145 DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLV  222 (325)
T ss_pred             CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEE
Confidence            9999999999999999999866666777877  999999999999988774221          2244444  4566888


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      +++  ...+.+|.++..+..   +++.+..+...   +.|.       ...++++++.+.+.-|.+.
T Consensus       223 CGg--Gp~lslwhLrsse~t---~vfpipa~v~~---v~F~-------~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  223 CGG--GPKLSLWHLRSSEST---CVFPIPARVHL---VDFV-------DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ecC--CCceeEEeccCCCce---EEEecccceeE---eeee-------cceEEEeccccceeeeeec
Confidence            764  567999999998754   66666554433   3342       2567888888888888754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.1e-15  Score=145.56  Aligned_cols=193  Identities=21%  Similarity=0.188  Sum_probs=154.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++|++||..+|+|+.||++|||++.+...+.....|...|.++.|+++                           +.+|
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~l  201 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKFL  201 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcEE
Confidence            5599999999999999999999999888888888889999999999998                           8899


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCC---CE--EEEEecCCcEEEEECCCCce-----eEEEecC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---SC--IYSAGADGMVCEIDPLTGSL-----LGKFRAS  158 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~---~~--l~s~s~dg~v~iwd~~~~~~-----~~~~~~~  158 (612)
                      ++-+.+ ..+||++++|..+.+.. .........+.|+.|+   .+  ++....-+.|+.||+...+.     .++....
T Consensus       202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~  280 (398)
T KOG0771|consen  202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR  280 (398)
T ss_pred             EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence            999999 99999999997765554 3344567788898877   33  33334556777777643221     1111122


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ...|+++++++||++++.|+  |.|-+++..+.+.++-+ +.|...|+.+.|+||.+++++.+ .|....+..+.-
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~v  355 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAV  355 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEee
Confidence            34799999999999999999  99999999988887666 57999999999999999999987 587888877654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.65  E-value=1.1e-13  Score=140.97  Aligned_cols=236  Identities=10%  Similarity=0.069  Sum_probs=150.5

Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECC-CCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        10 ~~~fspdg~~las~s-~dg~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      .++++||+++|++++ .++.|.+|++. ++...  .... ..+                  ....+.+.+.         
T Consensus        39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~------------------~p~~i~~~~~---------   90 (330)
T PRK11028         39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG------------------SPTHISTDHQ---------   90 (330)
T ss_pred             cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC------------------CceEEEECCC---------
Confidence            349999999987765 47899999986 34432  1111 011                  1122333332         


Q ss_pred             CcEEEEEE-CCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeE-----E
Q 007234           86 SSLLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----K  154 (612)
Q Consensus        86 ~~~l~~gs-~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~-----~  154 (612)
                      ++++++++ .++.|.+|++.+..    .+..+  .+.....+++++|+++++++++ .++.|.+||+.+...+.     .
T Consensus        91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            66666665 47789999997432    22221  2334567889999999986665 56999999997633221     1


Q ss_pred             Eec-CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC--C--eeEEEEecCC------CCEEEEEEeeCCcEEEEEEcC
Q 007234          155 FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--H--KKMQKFSGHP------GAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       155 ~~~-~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~--~--~~~~~~~~h~------~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      ... .......+.|+|+|++++++.   ++|.+|+++.  +  +.+..+..+.      .....+.|+|++++++++...
T Consensus       169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~  248 (330)
T PRK11028        169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT  248 (330)
T ss_pred             eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence            111 233567899999999998876   8999999973  3  3344443221      123468899999999988656


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECC
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ  282 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~  282 (612)
                      ++.|.+|++...... ...+..... ......+.++     |+|++|++++. +++|.+|+++
T Consensus       249 ~~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        249 ASLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCeEEEEEEeCCCCe-EEEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence            789999999654321 001111111 1122334565     99999998876 8899999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=2.5e-15  Score=150.91  Aligned_cols=239  Identities=14%  Similarity=0.178  Sum_probs=168.6

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEECCCC-cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           13 FSPALDYFAI--CSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        13 fspdg~~las--~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      |..+..++|.  .+..|.|-||++..- ++--       .+...        -.....++.+.|.+++        ...+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-------gv~p~--------l~Ngt~vtDl~WdPFD--------~~rL  643 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-------GVMPG--------LFNGTLVTDLHWDPFD--------DERL  643 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCc-------ccccc--------cccCceeeecccCCCC--------hHHe
Confidence            3444555553  455789999998642 2211       11101        1124468889999998        6789


Q ss_pred             EEEECCCcEEEEEcCCCeEE------EEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           90 VLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                      ++++.||.|++|.+..+...      ...+..|...|+++.|+| ....|++++.|.+|++||+.+++....+.+|.+.|
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI  723 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence            99999999999999765321      234467999999999999 45679999999999999999999999999999999


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCC-CCEEEEEEeeCCcEEEEEEcCC----CeEEEEEcCCCcc
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK  234 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d----~~i~vwd~~~~~~  234 (612)
                      ..++|+|||+.+++.+  |+|++|+.++++ ++++-.|.. ..-..|.|.-+|+++++.|. |    +.|.+||..+-..
T Consensus       724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~  802 (1012)
T KOG1445|consen  724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDL  802 (1012)
T ss_pred             eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccC
Confidence            9999999999999988  999999998764 344433322 22346889999999998874 4    4688998876543


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECC
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~  282 (612)
                      . ...+..++.....  .+.+.    ++|. ..+++|-.|..|.+|.+-
T Consensus       803 ~-pl~t~~lDvaps~--LvP~Y----D~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  803 R-PLYTQVLDVAPSP--LVPHY----DYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             C-cceeeeecccCcc--ccccc----cCCCceEEEecCCCceEEEEEec
Confidence            2 1122222221111  11111    2444 456677779999999854

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.64  E-value=1.1e-14  Score=133.48  Aligned_cols=199  Identities=14%  Similarity=0.214  Sum_probs=152.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      |+-|.|++..+|+-. |..|.+|+.+.+.. +.++....+.            + .....+.-.|.|..        +..
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~------------e-~~~~ftsg~WspHH--------dgn  185 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA------------E-MRHSFTSGAWSPHH--------DGN  185 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc------------c-ccceecccccCCCC--------ccc
Confidence            559999999998776 88999999998776 4444321110            0 12345566787754        334


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA  166 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~  166 (612)
                      -+....++++..||+++..+...+..+|...|..+.|+|+.++ |++|+.||.|++||++.- .++.++.+|...|+++.
T Consensus       186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR  265 (370)
T ss_pred             eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence            5667788999999999999988998999999999999998765 889999999999999754 57888999999999999


Q ss_pred             ECCCCC-EEEEeC--CeEEEEEcCCC-----------------------------eeEEEEecCCCCEEEEEEeeCCcEE
Q 007234          167 VSSDGK-MLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       167 ~spdg~-~l~~~~--g~i~lwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~sp~~~~l  214 (612)
                      |+|.-. ++++|+  ..|.+|....-                             ..+.++..|...|++++||.-..++
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            999654 455555  57777754210                             1234677899999999999888877


Q ss_pred             EEEEcCCCeEEEEEcC
Q 007234          215 LSSAVGERYIALWRTD  230 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~  230 (612)
                      +++-+.||.+.|=.+.
T Consensus       346 FASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  346 FASLSYDGRVIISSVP  361 (370)
T ss_pred             EEEeccCceEEeecCC
Confidence            7666689998775543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.64  E-value=6e-15  Score=137.34  Aligned_cols=225  Identities=12%  Similarity=0.202  Sum_probs=160.9

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE
Q 007234           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (612)
Q Consensus        14 spdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs   93 (612)
                      .|+..++|+.+.+.-|++||.-+|+....+..-.....             --...++.|.+.         +..|+.| 
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------GeqlfaG-  176 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLFAG-  176 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEeec-
Confidence            37788999999999999999999999887753221000             001223344333         6666655 


Q ss_pred             CCCcEEEEEc-CCCeEE--E-Ee---ccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           94 GGGDVLALAV-SAGQLK--W-RL---SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        94 ~~g~I~vwd~-~~~~~~--~-~~---~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      ....|++||+ +.|...  . ++   ..+..+-|.+++|+| +...++.++...++-++.-..++++..+-+|.+.|+.+
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL  256 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence            4567999999 444321  1 11   123467789999999 45589999999998888888889999999999999999


Q ss_pred             EECCCCCEEEEeC---CeEEEEEcCCC-eeEEEEecCCC-CEEEEE--EeeCCcEEEEEEcCCCeEEEEEcCC-Cccccc
Q 007234          166 AVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPG-AVRFMT--FSDNGKYVLSSAVGERYIALWRTDG-VKKQSA  237 (612)
Q Consensus       166 ~~spdg~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~-~v~~l~--~sp~~~~l~s~s~~d~~i~vwd~~~-~~~~~~  237 (612)
                      +|.++|+.|++|.   ..|..||++.. .++..+..|.. .-..|-  ..|++++|++++ .||.|++||+.+ +...  
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~~--  333 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNEV--  333 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCcc--
Confidence            9999999999998   68999999864 56777777765 333444  468999999886 799999999988 4322  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                         .........+..+.+.     |--.++++++.
T Consensus       334 ---sv~~~~sd~vNgvsln-----P~mpilatssG  360 (406)
T KOG2919|consen  334 ---SVTGNYSDTVNGVSLN-----PIMPILATSSG  360 (406)
T ss_pred             ---cccccccccccceecC-----cccceeeeccC
Confidence               2334445555666665     55455555544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.3e-13  Score=144.50  Aligned_cols=270  Identities=14%  Similarity=0.150  Sum_probs=178.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccc----cccceeEEEeeeccccccc---
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH----LSVDYTCMKWLSVDRKKKR---   82 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~w~~~~~~~~~---   82 (612)
                      ...||+|+++++.+. +..|+||...+|.++..+.+|..++....+.+......    .+.......|.-.++.-.+   
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~   99 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD   99 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence            457999999888776 55899999999999999999988888777766511100    0011111122211110000   


Q ss_pred             ------------------------------------cc--------------------------------CCcEEEEEEC
Q 007234           83 ------------------------------------KL--------------------------------GSSLLVLGTG   94 (612)
Q Consensus        83 ------------------------------------~~--------------------------------~~~~l~~gs~   94 (612)
                                                          +.                                +...+.....
T Consensus       100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~  179 (792)
T KOG1963|consen  100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH  179 (792)
T ss_pred             cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence                                                00                                0000111111


Q ss_pred             CCcEEEEEcCCCeE---EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE-CC-CC--ceeEEEecCCCCeeEEEE
Q 007234           95 GGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID-PL-TG--SLLGKFRASTKGISCMAV  167 (612)
Q Consensus        95 ~g~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd-~~-~~--~~~~~~~~~~~~v~~l~~  167 (612)
                      +..+.+|+...+..   .+.....|.-.+++.++||+++++++|..||.|.+|. +. ++  .....+.-|...|.+++|
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f  259 (792)
T KOG1963|consen  180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF  259 (792)
T ss_pred             eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence            22234444443221   0111124667789999999999999999999999995 33 12  344567778899999999


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee--
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM--  243 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~--  243 (612)
                      +++|.+|++|+  |.+-+|.+.+++ .+-++.-.++|..+.++||+.+..... .|..|.+-...+.....  .+..+  
T Consensus       260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~  335 (792)
T KOG1963|consen  260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKP  335 (792)
T ss_pred             ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccC
Confidence            99999999999  899999999998 444566778999999999999887776 79999998775443221  01111  


Q ss_pred             ------cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          244 ------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       244 ------~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                            .........++++     |..+.++-.+..|.|.+||+.+.+.+..
T Consensus       336 ~~~~~k~~~~~l~t~~~id-----pr~~~~vln~~~g~vQ~ydl~td~~i~~  382 (792)
T KOG1963|consen  336 PTPSTKTRPQSLTTGVSID-----PRTNSLVLNGHPGHVQFYDLYTDSTIYK  382 (792)
T ss_pred             CCccccccccccceeEEEc-----CCCCceeecCCCceEEEEeccccceeee
Confidence                  1123445556665     7667788889999999999988776643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.1e-13  Score=141.81  Aligned_cols=292  Identities=12%  Similarity=0.121  Sum_probs=196.8

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEE-CC-CCc--EEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWD-TL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd-~~-~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      -|.++||+++++|+|..||+|.+|. .. ++.  ..+.+-=|...|.++.|+.+                          
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--------------------------  262 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--------------------------  262 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--------------------------
Confidence            3569999999999999999999995 32 111  11122223344444444444                          


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---C---
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---S---  158 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---  158 (612)
                       |.+|++|+..|-+.+|.+.+++  +++++.-.++|..+.++||+.+......|+.|.+....+.....++.+   .   
T Consensus       263 -G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  263 -GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             -CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence             8999999999999999999998  467777889999999999999999999999999987655443333332   1   


Q ss_pred             -----CCCeeEEEECCC-CCEEEEeC-CeEEEEEcCCCeeEEEEe-----cC------CCCEEEEEEeeCCcEEEEEEc-
Q 007234          159 -----TKGISCMAVSSD-GKMLATAA-GQLKTFNCSDHKKMQKFS-----GH------PGAVRFMTFSDNGKYVLSSAV-  219 (612)
Q Consensus       159 -----~~~v~~l~~spd-g~~l~~~~-g~i~lwd~~~~~~~~~~~-----~h------~~~v~~l~~sp~~~~l~s~s~-  219 (612)
                           .+-.+.++++|. +..++.|. |.|.+||+-+.+.+.++.     .+      .-.++.++.+..|.++++.-. 
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~  419 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR  419 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence                 334677889994 44444555 999999998887666553     11      224666777777888887531 


Q ss_pred             ------CCC--eEEEEEcCCCcccc-ceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcceecc
Q 007234          220 ------GER--YIALWRTDGVKKQS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       220 ------~d~--~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                            .||  .+++|........- .......+|....+..+...     +... ..++++.||.+++|-+...+.+..
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-----~~rs~~~vta~~dg~~KiW~~~~~~n~~k  494 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-----PTRSVRCVTASVDGDFKIWVFTDDSNIYK  494 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-----CcccceeEEeccCCeEEEEEEecccccCc
Confidence                  222  57889876654321 01122334555555555444     3333 899999999999998765544321


Q ss_pred             cCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc
Q 007234          290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (612)
Q Consensus       290 ~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s  369 (612)
                      .   ...+.|..                                          .-..|...+.+++||.||..|  +.|
T Consensus       495 ~---~s~W~c~~------------------------------------------i~sy~k~~i~a~~fs~dGsll--a~s  527 (792)
T KOG1963|consen  495 K---SSNWTCKA------------------------------------------IGSYHKTPITALCFSQDGSLL--AVS  527 (792)
T ss_pred             C---ccceEEee------------------------------------------eeccccCcccchhhcCCCcEE--EEe
Confidence            1   11111100                                          011366689999999999765  566


Q ss_pred             ceeeecceeeec
Q 007234          370 LLKSKRGRYVQN  381 (612)
Q Consensus       370 ~d~~~~~w~~~~  381 (612)
                      .|+++.+|+..+
T Consensus       528 ~~~~Itiwd~~~  539 (792)
T KOG1963|consen  528 FDDTITIWDYDT  539 (792)
T ss_pred             cCCEEEEecCCC
Confidence            789999998855

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=1.3e-12  Score=124.30  Aligned_cols=144  Identities=19%  Similarity=0.355  Sum_probs=120.5

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccC--CCCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEEecCCCCe
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                      +.++++-.+. |+|||+++-+.+.++..-  |...+.++++++++.+++--+  ..|.|.+||..+-+++.++.+|++.+
T Consensus        98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l  176 (391)
T KOG2110|consen   98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL  176 (391)
T ss_pred             ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence            3455555544 999999999998777543  667788888888777877543  46889999999999999999999999


Q ss_pred             eEEEECCCCCEEEEeC--C-eEEEEEcCCCeeEEEEecCC--CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          163 SCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g-~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .+++|+++|.+||+++  | .|||+.+.+|+.+.+|+.-.  ..|.+++|+|++++|.+++ ..++|.+|.+...
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV  250 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence            9999999999999999  5 68999999999999996433  3577999999999988887 6899999998654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.61  E-value=6e-15  Score=133.72  Aligned_cols=279  Identities=11%  Similarity=0.070  Sum_probs=177.6

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +++.|+++  .|..+++ |.+|..-|.|++|++++.+....+..+..                    .++.|...-+   
T Consensus        13 ~~~~v~s~--~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~--------------------~~it~lq~~p---   66 (323)
T KOG0322|consen   13 HSSSVTSV--LFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR--------------------LFITNLQSIP---   66 (323)
T ss_pred             ccchheeh--hhccchh-hhcccccceEEEEEeecCccchhhhhhcc--------------------ceeeceeecC---
Confidence            45667555  8888776 77899999999999999887766652221                    1222322221   


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-----C----EEEEEecCC-cEEEEECCCCce
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-----S----CIYSAGADG-MVCEIDPLTGSL  151 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-----~----~l~s~s~dg-~v~iwd~~~~~~  151 (612)
                          +..+.+-+.|+.+.+|++.-+..+    ..|+-.++++.|.+..     +    .++.-+... .+.+-|......
T Consensus        67 ----~d~l~tqgRd~~L~lw~ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq  138 (323)
T KOG0322|consen   67 ----NDSLDTQGRDPLLILWTIAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ  138 (323)
T ss_pred             ----CcchhhcCCCceEEEEEccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence                456778888999999999876554    2355555666665421     1    111111000 012222211112


Q ss_pred             eEEEe----cCCCCeeEEEECC-CCC-EEEE-eC--CeEEEEEcCCCe----------eEEEEecCCCCEEEEEEeeCCc
Q 007234          152 LGKFR----ASTKGISCMAVSS-DGK-MLAT-AA--GQLKTFNCSDHK----------KMQKFSGHPGAVRFMTFSDNGK  212 (612)
Q Consensus       152 ~~~~~----~~~~~v~~l~~sp-dg~-~l~~-~~--g~i~lwd~~~~~----------~~~~~~~h~~~v~~l~~sp~~~  212 (612)
                      +....    ...+.+.|..+.. ++. .++. |.  |.+.+||+.++.          .+.....|.++|.++.|.+.-.
T Consensus       139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~  218 (323)
T KOG0322|consen  139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD  218 (323)
T ss_pred             eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence            22111    1234677776533 333 3333 43  999999999973          3334457999999999987655


Q ss_pred             EEEEEEcCCCeEEEEEcCCC--ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          213 YVLSSAVGERYIALWRTDGV--KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       213 ~l~s~s~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      .=+++| .+..+..|+++..  ... ......+.++..  ..+.+.     ||++.+++++.||+|+||+.++.+.+.  
T Consensus       219 rGisgg-a~dkl~~~Sl~~s~gslq-~~~e~~lknpGv--~gvrIR-----pD~KIlATAGWD~RiRVyswrtl~pLA--  287 (323)
T KOG0322|consen  219 RGISGG-ADDKLVMYSLNHSTGSLQ-IRKEITLKNPGV--SGVRIR-----PDGKILATAGWDHRIRVYSWRTLNPLA--  287 (323)
T ss_pred             CCcCCC-ccccceeeeeccccCccc-ccceEEecCCCc--cceEEc-----cCCcEEeecccCCcEEEEEeccCCchh--
Confidence            556666 5667888988654  221 112233334332  333444     999999999999999999988776542  


Q ss_pred             CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccc
Q 007234          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL  370 (612)
Q Consensus       291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~  370 (612)
                                                                           .+..|...|.+++||||..++ +.+|.
T Consensus       288 -----------------------------------------------------VLkyHsagvn~vAfspd~~lm-Aaask  313 (323)
T KOG0322|consen  288 -----------------------------------------------------VLKYHSAGVNAVAFSPDCELM-AAASK  313 (323)
T ss_pred             -----------------------------------------------------hhhhhhcceeEEEeCCCCchh-hhccC
Confidence                                                                 345677789999999999998 99999


Q ss_pred             eeeecceee
Q 007234          371 LKSKRGRYV  379 (612)
Q Consensus       371 d~~~~~w~~  379 (612)
                      |..|.+|++
T Consensus       314 D~rISLWkL  322 (323)
T KOG0322|consen  314 DARISLWKL  322 (323)
T ss_pred             CceEEeeec
Confidence            999999974

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.61  E-value=9.7e-14  Score=133.22  Aligned_cols=244  Identities=17%  Similarity=0.187  Sum_probs=168.6

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECC--------C--------CcEEEEeeccCCccccccccccccccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--------K--------GQVQTEFADIASTETTSLYGNRLEREHLS   65 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--------~--------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~   65 (612)
                      |..+|+.+  .|+|+|+.||+|+.+|.|.+|-..        +        -.....+.+|...+..++|+++       
T Consensus        64 H~~aVN~v--Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-------  134 (434)
T KOG1009|consen   64 HTRAVNVV--RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-------  134 (434)
T ss_pred             CcceeEEE--EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-------
Confidence            45678656  999999999999999999999765        2        1122334444444444444444       


Q ss_pred             cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (612)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd  145 (612)
                                          +.++++|+.|..+++||+..|+....+ .+|...|..++|.|-++++++-+.|...+.+.
T Consensus       135 --------------------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  135 --------------------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             --------------------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceee
Confidence                                789999999999999999999998665 67999999999999999999999888777766


Q ss_pred             CCCCceeEEEe---------------------cC--CCCeeEEEECCCCCEEEEeCC-----------eEEEEEcCC-Ce
Q 007234          146 PLTGSLLGKFR---------------------AS--TKGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HK  190 (612)
Q Consensus       146 ~~~~~~~~~~~---------------------~~--~~~v~~l~~spdg~~l~~~~g-----------~i~lwd~~~-~~  190 (612)
                      +...+.+....                     ..  ......++|+|||.++++..|           ..++|+-+. .+
T Consensus       194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r  273 (434)
T KOG1009|consen  194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR  273 (434)
T ss_pred             eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence            55433222211                     10  123556899999999998762           234554332 24


Q ss_pred             eEEEEecCCCCEEEEEEee------------------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEe
Q 007234          191 KMQKFSGHPGAVRFMTFSD------------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (612)
Q Consensus       191 ~~~~~~~h~~~v~~l~~sp------------------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (612)
                      +...+++...++..+.|+|                  -+-.++.++  ...|.+||.++..+.   +... .-+-..++-
T Consensus       274 P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v~-nihy~~iTD  347 (434)
T KOG1009|consen  274 PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVVD-NIHYSAITD  347 (434)
T ss_pred             ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEEe-eeeeeeecc
Confidence            4566666666666666665                  122334443  568999998887644   2221 223334455


Q ss_pred             EEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       253 ~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      ++|+     +||..++..|.||...+-.++..++
T Consensus       348 iaws-----~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  348 IAWS-----DDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eeec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence            5665     9999999999999888877766554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=3.1e-15  Score=154.69  Aligned_cols=242  Identities=15%  Similarity=0.166  Sum_probs=179.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ..+|  -|+.|...|.++++|+.|..++||..+++.+.....||.+.++..+.+..                        
T Consensus       190 ~naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------------------------  243 (1113)
T KOG0644|consen  190 RNAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------------------------  243 (1113)
T ss_pred             hhhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------------------------
Confidence            3466  46699999999999999999999999999999999999998887666655                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-------------
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------------  149 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-------------  149 (612)
                         +.++++++.|.-|++|.+.++..+. ++.+|++.|++++|+|-.    +.+.||++++||.+-.             
T Consensus       244 ---n~~iaaaS~D~vIrvWrl~~~~pvs-vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~  315 (1113)
T KOG0644|consen  244 ---NTMIAAASNDKVIRVWRLPDGAPVS-VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTE  315 (1113)
T ss_pred             ---hhhhhhcccCceEEEEecCCCchHH-HHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccc
Confidence               6788999999999999999999884 447899999999999953    7789999999998610             


Q ss_pred             -ceeEEEec----------------CCCCeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCC
Q 007234          150 -SLLGKFRA----------------STKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHP  199 (612)
Q Consensus       150 -~~~~~~~~----------------~~~~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~  199 (612)
                       ..+..+..                ....+.+++|...+-.+++.+             ..+++|++.+|.....+.+|.
T Consensus       316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence             11111000                001122333333222233222             367899999999999999999


Q ss_pred             CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEE
Q 007234          200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (612)
Q Consensus       200 ~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iw  279 (612)
                      ..+..+.++|-+..++-....||...|||+-.+.+.   .++... +...++ ..|+     +||..++....-|.++|.
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d-~kFS-----qdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVD-GKFS-----QDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeec-cccC-----CCCceEecCCCCCceEEe
Confidence            999999999977665544448999999999988755   233333 333333 3455     999999988888999999


Q ss_pred             ECCCcceec
Q 007234          280 YGQNIEELR  288 (612)
Q Consensus       280 d~~~~~~~~  288 (612)
                      ....++...
T Consensus       466 g~gqs~s~k  474 (1113)
T KOG0644|consen  466 GTGQSKSQK  474 (1113)
T ss_pred             ccCCCcccc
Confidence            765554443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.60  E-value=6.7e-15  Score=147.81  Aligned_cols=181  Identities=13%  Similarity=0.169  Sum_probs=138.2

Q ss_pred             EEECCCcEEEEEcCCC-eE----EEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCC-------ceeEEEec
Q 007234           91 LGTGGGDVLALAVSAG-QL----KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-------SLLGKFRA  157 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~-~~----~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~-------~~~~~~~~  157 (612)
                      ..+..|.|-||+++.. +.    +..+.  ....|+++.|.| |...|++++.||.|++|.+..+       .+...+..
T Consensus       598 L~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  598 LAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             ecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence            3556788999999753 22    22222  456799999999 7778999999999999998754       34566788


Q ss_pred             CCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          158 STKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       158 ~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      |...|+++.|+|- ...|++++  .+|++||+++++....+.||.+.|.+++|||+|+.+++.| .||+|++|..++++.
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSREQ  754 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCCC
Confidence            9999999999993 45667766  7999999999999999999999999999999999999998 799999999988764


Q ss_pred             ccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCC----cEEEEECCCc
Q 007234          235 QSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQNI  284 (612)
Q Consensus       235 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg----~i~iwd~~~~  284 (612)
                      .    ++....+  .....+.+.      -||+++++.+.|.    .|.+||.++.
T Consensus       755 p----v~Eg~gpvgtRgARi~wa------cdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  755 P----VYEGKGPVGTRGARILWA------CDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             c----cccCCCCccCcceeEEEE------ecCcEEEEecccccchhhhhhhhhhhc
Confidence            3    2222221  112233333      4778888877654    6778876544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=3.8e-13  Score=142.88  Aligned_cols=288  Identities=14%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      .|+|-...++++...-+|+|||.+.+++...|..+...               ...++.+.......       ..++++
T Consensus      1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~D-------~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQD-------DALLLT 1128 (1387)
T ss_pred             eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeecccc-------hhheee
Confidence            89998888998886678999999999998877543311               12334444433221       578999


Q ss_pred             EECCCcEEEEEcCCC-----eEEEEe------ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-
Q 007234           92 GTGGGDVLALAVSAG-----QLKWRL------SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (612)
Q Consensus        92 gs~~g~I~vwd~~~~-----~~~~~~------~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-  159 (612)
                      |+.||.|+||+--..     +.+...      ..+-.+.=.-+.|.....+|+++|.-..|++||....+.+..+.... 
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence            999999999975322     222111      01111111345677766778887778899999998887777765433 


Q ss_pred             CCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCe---eEEEEecCCCC--EEEEEEeeCCcE-EEEEEcCCCeEEEEEcC
Q 007234          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGKY-VLSSAVGERYIALWRTD  230 (612)
Q Consensus       160 ~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~--v~~l~~sp~~~~-l~s~s~~d~~i~vwd~~  230 (612)
                      ..++++.-+- .|+.+++|.  |.|++||.+...   .+...+.|+..  |..+.+.+.|-- +++++ .||.|++||++
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence            3677776543 468888886  999999988653   46677788877  999999887654 88887 79999999999


Q ss_pred             CCccccceeeEee-cCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCC
Q 007234          231 GVKKQSASCVLAM-EHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (612)
Q Consensus       231 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~  307 (612)
                      ......   .... .+.  +..++++...     +....+++|+. +.|+||++. |+++..++..       ..|..  
T Consensus      1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n-------~~F~~-- 1348 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLS-GEQLNIIKYN-------PGFMG-- 1348 (1387)
T ss_pred             cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecC-hhhhcccccC-------ccccc--
Confidence            853221   1111 122  2235555554     77788999988 999999974 3443322211       00000  


Q ss_pred             cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                                             .....+.|++|.|--.+| +.|++|..+.++...+
T Consensus      1349 ---------------------------------------q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1349 ---------------------------------------QRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             ---------------------------------------CcCCCcceeeecchhHhh-hhccCCceEEEeecCC
Confidence                                                   112245889999998888 8999999999987643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=4.8e-13  Score=120.03  Aligned_cols=204  Identities=17%  Similarity=0.254  Sum_probs=139.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccc-cceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS-VDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~w~~~~~~~   80 (612)
                      +.+||+.+  +|.  ..+|.+|+ ||.|+=|.++....-...+..-      ..-++...+... ..+.. .|..+.   
T Consensus        61 hdgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lw------e~~~P~~~~~~evPeINa-m~ldP~---  125 (325)
T KOG0649|consen   61 HDGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLW------EVKIPMQVDAVEVPEINA-MWLDPS---  125 (325)
T ss_pred             cCCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhhh------hhcCccccCcccCCccce-eEeccC---
Confidence            56788777  887  44666665 6999999886443211110000      000000001111 11222 233322   


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-  159 (612)
                           .+-++.++.|+.++-||+++|+....+ .+|++.|.++.-......+++|+.||++++||++++++++.+.... 
T Consensus       126 -----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~  199 (325)
T KOG0649|consen  126 -----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN  199 (325)
T ss_pred             -----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC
Confidence                 344566669999999999999998776 7999999999985555679999999999999999999988875422 


Q ss_pred             ---------CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          160 ---------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       160 ---------~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                               ..|.+++.  +..+|++|+ -.+.+|+++..++...|+ -..++..+.|..|  .++++| ..+.|.-|.+
T Consensus       200 ~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l  273 (325)
T KOG0649|consen  200 PNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTL  273 (325)
T ss_pred             hhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeee
Confidence                     23555555  466999998 589999999999888886 5667888888754  567776 5778999987


Q ss_pred             CCC
Q 007234          230 DGV  232 (612)
Q Consensus       230 ~~~  232 (612)
                      ...
T Consensus       274 ~Gv  276 (325)
T KOG0649|consen  274 NGV  276 (325)
T ss_pred             ccE
Confidence            653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=6e-15  Score=143.53  Aligned_cols=225  Identities=15%  Similarity=0.201  Sum_probs=175.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .+.|+.+|++|+.|+.-|.|-.+|+.++++..++.. ...|.++.|-+.                           .. +
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHn---------------------------eq-~  184 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHN---------------------------EQ-F  184 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcc---------------------------hH-H
Confidence            348999999999999999999999999999888752 222333333322                           23 3


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp  169 (612)
                      +.......++|||-. |..+..+ . ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus       185 ~AVAQK~y~yvYD~~-GtElHCl-k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  185 FAVAQKKYVYVYDNN-GTELHCL-K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             HHhhhhceEEEecCC-CcEEeeh-h-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            444455678899855 4444444 3 236799999999888899999999999999999999999998888999999999


Q ss_pred             CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc
Q 007234          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (612)
                      -+-.+-+|.  |+|.+|.....+++.++-.|.++|.++++.++|+|++++| .|+.++|||++.-...   ......++.
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql---~t~~tp~~a  337 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQL---HTYRTPHPA  337 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccccc---ceeecCCCc
Confidence            988888887  9999999999999988899999999999999999999998 6999999999987644   112223333


Q ss_pred             eeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                         ..+.++     .  +-+++.+....+.+|.
T Consensus       338 ---~~ls~S-----q--kglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 ---SNLSLS-----Q--KGLLALSYGDHVQIWK  360 (545)
T ss_pred             ---cccccc-----c--ccceeeecCCeeeeeh
Confidence               334454     3  3345556666899995

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=7.9e-14  Score=138.15  Aligned_cols=171  Identities=21%  Similarity=0.370  Sum_probs=131.6

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234           15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (612)
Q Consensus        15 pdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~   94 (612)
                      |.|--+..|-..|.|.+.|....+..+-|.            ..  .......++|+.|.+.+        ...++++-.
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfn------------e~--r~i~ktsvT~ikWvpg~--------~~~Fl~a~~  240 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFN------------EE--RLINKSSVTCIKWVPGS--------DSLFLVAHA  240 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhh------------hc--ccccccceEEEEEEeCC--------CceEEEEEe
Confidence            344456666667777777765422221111            11  11224578999999987        678889999


Q ss_pred             CCcEEEEEcCC--------------CeEEE--------------EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234           95 GGDVLALAVSA--------------GQLKW--------------RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus        95 ~g~I~vwd~~~--------------~~~~~--------------~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                      +|.+++||..-              +....              .. .--.+.|..++|+|||++|++.|.||.+++||+
T Consensus       241 sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f  319 (636)
T KOG2394|consen  241 SGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDF  319 (636)
T ss_pred             cCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeec
Confidence            99999997531              11100              00 012347889999999999999999999999999


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEe
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s  208 (612)
                      .+.+++..++.--+...|++|+|||+++++|+  ..|.||.+..++.+..-.||.+.|+.++|.
T Consensus       320 dt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  320 DTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            99988888887778999999999999999999  799999999999999999999999999998

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=6.2e-12  Score=117.46  Aligned_cols=236  Identities=16%  Similarity=0.207  Sum_probs=163.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus         8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .+.++|+.|..-++.|..+| .+||+++--+....-+.+.++                .....+.+-           .+
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G----------------~~~veMLfR-----------~N   59 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG----------------FKIVEMLFR-----------SN   59 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc----------------hhhhhHhhh-----------hc
Confidence            35679999999999998776 699998753322111111110                001111110           23


Q ss_pred             EEEE-EECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC-CCceeEEEecCC
Q 007234           88 LLVL-GTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRAST  159 (612)
Q Consensus        88 ~l~~-gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~  159 (612)
                      +++. |+.+      .+|.|||=....++.++.  ...+|.++.+.++  .+++. ..+.|++|... ..+.++.+....
T Consensus        60 ~laLVGGg~~pky~pNkviIWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~  134 (346)
T KOG2111|consen   60 YLALVGGGSRPKYPPNKVIIWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS  134 (346)
T ss_pred             eEEEecCCCCCCCCCceEEEEecccCcEEEEEE--eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc
Confidence            4443 4333      249999976677766653  6789999999875  45555 57889999987 456666655432


Q ss_pred             --CCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEEcCCC-eEEEEEcCC
Q 007234          160 --KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDG  231 (612)
Q Consensus       160 --~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~-~i~vwd~~~  231 (612)
                        .++.+++-+.+..+||.-+   |.|+|-|+...+.  -..+..|.+.|.+++.+-+|..+++++ ..| -|+|||..+
T Consensus       135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~~  213 (346)
T KOG2111|consen  135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDTED  213 (346)
T ss_pred             CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEcCC
Confidence              3444444444455566555   8999999987655  467789999999999999999999998 455 589999999


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      +.+.   ..+.-+.....+.++.|+     |++.+|+++|..|+++||.++...
T Consensus       214 g~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  214 GTLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CcEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecCC
Confidence            9866   334444455566778887     999999999999999999986543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=7.4e-13  Score=139.44  Aligned_cols=215  Identities=14%  Similarity=0.130  Sum_probs=140.0

Q ss_pred             CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC---CcEEEEE
Q 007234           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALA  102 (612)
Q Consensus        26 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~---g~I~vwd  102 (612)
                      +..|.+||..... .+.+..+...+....|+++                           ++.++.++.+   ..|++||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~i~i~d  234 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD---------------------------GSKLAYVSFENKKSQLVVHD  234 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCC---------------------------CCEEEEEEecCCCcEEEEEe
Confidence            4689999986554 4555555555666666665                           6777776543   3599999


Q ss_pred             cCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEE--EECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-
Q 007234          103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-  178 (612)
Q Consensus       103 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~i--wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-  178 (612)
                      +.+++.....  ...+....++|+|||+.|+.++ .+|.+.+  ||+.+++. ..+..+...+.+..|+|||+.|+.++ 
T Consensus       235 l~tg~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        235 LRSGARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             CCCCceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence            9988643211  1222344789999999888764 6776555  46666554 44555666788999999999877654 


Q ss_pred             --CeEEEEEcC--CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEE
Q 007234          179 --GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC  254 (612)
Q Consensus       179 --g~i~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (612)
                        |...+|++.  ++. ...+ ++..  ....|+|||++++.++ .++ +.+||+.++...   . ......   .....
T Consensus       312 ~~g~~~I~~~~~~~~~-~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~---~-lt~~~~---~~~~~  378 (429)
T PRK01742        312 RSGSPQVYRMSASGGG-ASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTE---V-LSSTFL---DESPS  378 (429)
T ss_pred             CCCCceEEEEECCCCC-eEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeE---E-ecCCCC---CCCce
Confidence              667777654  332 2233 3443  4578999999998876 455 566999887533   1 111111   12344


Q ss_pred             ecCCccCCCCcEEEEEecCCcEEEEECC--Ccceecc
Q 007234          255 IDNGGVDDAGLYVLAISETGVCYIWYGQ--NIEELRN  289 (612)
Q Consensus       255 ~~~~~~~~~~~~l~t~s~dg~i~iwd~~--~~~~~~~  289 (612)
                      |+     |||++|+.++.+|.+.+|++.  +|...+.
T Consensus       379 ~s-----PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        379 IS-----PNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             EC-----CCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            55     999999999999988888752  3444433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.54  E-value=1.7e-13  Score=124.33  Aligned_cols=143  Identities=22%  Similarity=0.359  Sum_probs=118.1

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEec---------cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC--c--ee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS---------DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--S--LL  152 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~---------~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~--~~  152 (612)
                      .-++++|..+|.|.+||+.++..+..+.         ..|..+|.++.|.+....=++|+.+..+..|.+...  .  ..
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence            3467788899999999999984433321         368999999999886666788888888999987643  2  12


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      ..+.-..-++..+...||++++|+++  |.|++|+.++.+++..+.-|...|++++|+|+...+++++ .|+.|.+|++
T Consensus       245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas-kD~rISLWkL  322 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS-KDARISLWKL  322 (323)
T ss_pred             ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc-CCceEEeeec
Confidence            22333345789999999999999999  9999999999999999999999999999999988888887 8999999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=8.9e-14  Score=134.46  Aligned_cols=199  Identities=15%  Similarity=0.106  Sum_probs=147.7

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec--
Q 007234          121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG--  197 (612)
Q Consensus       121 ~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~--  197 (612)
                      ..++|+++|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++-+ ...+||+++++..+.....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence            6789999999999999999999999888887778888999999999999999999888 7999999999977666542  


Q ss_pred             CCCCEEEEEEeeCC---c-EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234          198 HPGAVRFMTFSDNG---K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (612)
Q Consensus       198 h~~~v~~l~~sp~~---~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d  273 (612)
                      .......+.|+.|+   . ++++.-..-+.|+.|++...+..........-.....+++...+     ++|++++.|+.|
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d  302 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD  302 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence            22345677888776   3 23333334556777776554331000111111223345666676     999999999999


Q ss_pred             CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (612)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (612)
                      |.|-+++..+.+.+..              .                                        -..|...|+
T Consensus       303 GsVai~~~~~lq~~~~--------------v----------------------------------------k~aH~~~VT  328 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQY--------------V----------------------------------------KEAHLGFVT  328 (398)
T ss_pred             CcEEEEEeceeeeeEe--------------e----------------------------------------hhhheeeee
Confidence            9999999766554321              1                                        124677899


Q ss_pred             EEEecCCCceEeccccceeeecceee
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      .+.|+||.+++ ++-|.|....+..+
T Consensus       329 ~ltF~Pdsr~~-~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  329 GLTFSPDSRYL-ASVSSDNEAAVTKL  353 (398)
T ss_pred             eEEEcCCcCcc-cccccCCceeEEEE
Confidence            99999999999 88888888877765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.4e-13  Score=141.16  Aligned_cols=189  Identities=14%  Similarity=0.133  Sum_probs=126.0

Q ss_pred             cccceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      .++..  .+|||||++||.++.+   ..|.+||+.+++.... ....+...                  ...|.|.    
T Consensus       204 ~~v~~--p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~------------------~~~wSPD----  258 (429)
T PRK01742        204 QPLMS--PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNG------------------APAFSPD----  258 (429)
T ss_pred             Ccccc--ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccC------------------ceeECCC----
Confidence            34644  4999999999988753   3699999988864322 11111111                  2345443    


Q ss_pred             ccccCCcEEEEE-ECCCcE--EEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCC-ceeEEE
Q 007234           81 KRKLGSSLLVLG-TGGGDV--LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF  155 (612)
Q Consensus        81 ~~~~~~~~l~~g-s~~g~I--~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~-~~~~~~  155 (612)
                           ++.|+.+ +.+|.+  ++||+.++... .+ ..+...+.+..|+|||+.|+.++ .+|...+|++... .....+
T Consensus       259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             -----CCEEEEEEecCCcEEEEEEECCCCCeE-ee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence                 6666665 467765  45577666653 34 34667788999999999876555 5788888876432 222223


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                       .+..  .+..|+|||++++.++ ..+.+||+.+++.......+  ....+.|+|+|+++++++ .++.+.+|.+.
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~  401 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV  401 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence             3333  4678999999998877 67778999988754322222  335678999999999987 58878888764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.8e-12  Score=121.47  Aligned_cols=196  Identities=19%  Similarity=0.303  Sum_probs=143.6

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..++.+  +|++.-.-+|++..|..|++||-.+ ++...++                 .......+|++|-|-.      
T Consensus        99 ~dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------  152 (445)
T KOG2139|consen   99 IDLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------  152 (445)
T ss_pred             cceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC------
Confidence            456666  9999877889999999999999766 4444443                 2335688999998876      


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCC----eEE--------EEec-cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCC
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAG----QLK--------WRLS-DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTG  149 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~----~~~--------~~~~-~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~  149 (612)
                        ...+++|+..| |.+|.....    ..+        ..+. .+| .+|+++.|++||..+++++. |..|.+||..++
T Consensus       153 --aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg  228 (445)
T KOG2139|consen  153 --ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG  228 (445)
T ss_pred             --cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence              56788887766 778876431    110        0111 344 68999999999999999985 668999999998


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      ..+.......+.++-+.|||||.+++++.  +..++|+...........--.+.|...+|+|+|++|+.+++  +.-.+|
T Consensus       229 ~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~ly  306 (445)
T KOG2139|consen  229 QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLY  306 (445)
T ss_pred             CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEE
Confidence            87666544567889999999999999887  89999965443222222334558999999999998888764  444566


Q ss_pred             EcCC
Q 007234          228 RTDG  231 (612)
Q Consensus       228 d~~~  231 (612)
                      .+..
T Consensus       307 sl~f  310 (445)
T KOG2139|consen  307 SLTF  310 (445)
T ss_pred             EEee
Confidence            6543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=1.2e-12  Score=129.91  Aligned_cols=196  Identities=17%  Similarity=0.241  Sum_probs=144.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEec---cCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCC-------------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT-------------  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~-------------  148 (612)
                      +--+++|-..|.|.+.|+...+....+.   .-....|+++.|-|.+ ..++.+-.+|.++++|..-             
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k  264 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK  264 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence            6678999999999999987633221110   1124689999999954 4566677899999997531             


Q ss_pred             -Cc--------------eeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC
Q 007234          149 -GS--------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG  211 (612)
Q Consensus       149 -~~--------------~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~  211 (612)
                       +.              ++..+....+.|...+|+|||++||+.+  |.++|||..+.+++..++.--+...|++|||||
T Consensus       265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG  344 (636)
T KOG2394|consen  265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG  344 (636)
T ss_pred             CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence             11              1222223345788999999999999998  999999999998887777777889999999999


Q ss_pred             cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCC------------------------------ccC
Q 007234          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG------------------------------GVD  261 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~  261 (612)
                      +|++++| +|.-|.||.+...+     .+.....+...++.++|.+-                              ..+
T Consensus       345 KyIvtGG-EDDLVtVwSf~erR-----VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S  418 (636)
T KOG2394|consen  345 KYIVTGG-EDDLVTVWSFEERR-----VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS  418 (636)
T ss_pred             cEEEecC-CcceEEEEEeccce-----EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence            9999998 79999999998876     33444556666677777610                              001


Q ss_pred             C-------------CCcEEEEEecCCcEEEEECCCccee
Q 007234          262 D-------------AGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       262 ~-------------~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      .             ....|.+.+.|-.+.+||+......
T Consensus       419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             cCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence            1             1246788899999999998765443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.51  E-value=1.8e-13  Score=135.37  Aligned_cols=178  Identities=20%  Similarity=0.268  Sum_probs=133.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      -++|  +|-.|+|||.-|++++.||.|++|.- +|-+..++.                  .....+.|..|.|.+.    
T Consensus       104 ~~A~--~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~------------------Q~~~~v~c~~W~p~S~----  158 (737)
T KOG1524|consen  104 AAAI--SSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV------------------QNEESIRCARWAPNSN----  158 (737)
T ss_pred             hhhh--hhcccCCCCceeeeecCCceEEEEec-cchHHHHHh------------------hcCceeEEEEECCCCC----
Confidence            4556  66799999999999999999999984 454433321                  1234566888888753    


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                          +  ++-+..|.+.|=.+..+..+-+. .+|.+-|.++.|++.++.+++|+.|...++||- -|+.+.+-..|+.+|
T Consensus       159 ----~--vl~c~g~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  159 ----S--IVFCQGGHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI  230 (737)
T ss_pred             ----c--eEEecCCeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence                2  33344556666555555444344 579999999999999999999999999999995 577777777889999


Q ss_pred             eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      ++++|.|| +.++.++ +++++=           ....+.|..++||+||..++.++ ..|.+.+
T Consensus       231 TSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~  282 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGT-STGQLIV  282 (737)
T ss_pred             eeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence            99999999 7777777 676621           23457789999999999988876 4665543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.51  E-value=3.4e-12  Score=133.83  Aligned_cols=244  Identities=18%  Similarity=0.212  Sum_probs=168.0

Q ss_pred             ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCCCeEEEEEecCCCE--EEEEec
Q 007234           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSC--IYSAGA  137 (612)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~--l~s~s~  137 (612)
                      ...++|+.+.+.+        ..+++.|+.+|.|.+||++.+..     +......|..+|+.+.|..+..-  |+++|.
T Consensus       242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss  313 (555)
T KOG1587|consen  242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS  313 (555)
T ss_pred             CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence            3467788888887        77899999999999999987765     22333579999999999765444  999999


Q ss_pred             CCcEEEEECCCCce------eEEEe------cCCCCeeEEEECCC-CCEEEEeC--CeEEEEE---cCCC-----eeEEE
Q 007234          138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSD-GKMLATAA--GQLKTFN---CSDH-----KKMQK  194 (612)
Q Consensus       138 dg~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd---~~~~-----~~~~~  194 (612)
                      ||.|..|+++.-..      .....      .....+++++|.|. -..+++|+  |.|+--+   .+..     +....
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~  393 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST  393 (555)
T ss_pred             CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence            99999998764322      11111      11237889999884 34566666  8776633   2222     12345


Q ss_pred             EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC-CcEEEEEecC
Q 007234          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET  273 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~t~s~d  273 (612)
                      +..|.++|+.+.++|-+..++.++ .|-++++|.-.....    +++........+..++|+     |. ...|+++..|
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~  463 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD  463 (555)
T ss_pred             ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence            567889999999999887666666 489999999773221    234444455546677787     44 3567778889


Q ss_pred             CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (612)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (612)
                      |.|.+||+.....-.                 ..+                                    ...+.....
T Consensus       464 G~l~iWDLl~~~~~P-----------------v~s------------------------------------~~~~~~~l~  490 (555)
T KOG1587|consen  464 GNLDIWDLLQDDEEP-----------------VLS------------------------------------QKVCSPALT  490 (555)
T ss_pred             CceehhhhhccccCC-----------------ccc------------------------------------ccccccccc
Confidence            999999975432210                 000                                    000111344


Q ss_pred             EEEecCCCceEeccccceeeecceeee
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      .+.|+++|++| +.|...|++.++++.
T Consensus       491 ~~~~s~~g~~l-avGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  491 RVRWSPNGKLL-AVGDANGTTHILKLS  516 (555)
T ss_pred             eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence            56688999999 999999999999884

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=8.7e-12  Score=127.20  Aligned_cols=316  Identities=14%  Similarity=0.135  Sum_probs=179.9

Q ss_pred             CEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           18 DYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        18 ~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      ++++ +-..+|.|.|.|..+.+.+.++...........|+++                           ++++++++.||
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg   58 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG   58 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence            4454 4456899999999999999998754333233344444                           78899999999


Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEEEecC-------CCCeeEEEEC
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS  168 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~s  168 (612)
                      .|.++|+.+++.+.++..  .....++++++||+++++++ .++.+.++|.++.+.++.+...       ...+.++..+
T Consensus        59 ~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   59 TVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             EEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             eEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            999999999999988854  35678999999999988775 6899999999999999887643       3467888888


Q ss_pred             CCCCEEEEe-C--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce------
Q 007234          169 SDGKMLATA-A--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS------  238 (612)
Q Consensus       169 pdg~~l~~~-~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~------  238 (612)
                      |.+..++.. -  +.|.+.|....+.+. +............|+|+++|++.+...++.|-++|..+++.....      
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            888855554 3  899999987764332 222344567789999999998887777889999998887543100      


Q ss_pred             ---eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          239 ---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                         ....+.|+..-.- ....     ..+...++.-..+.+.+||..+.+.++.++........  ...|+++    .+.
T Consensus       217 ~~~~~~~~php~~g~v-w~~~-----~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi--~thP~s~----~vw  284 (369)
T PF02239_consen  217 HPGPGANFPHPGFGPV-WATS-----GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFI--KTHPDSR----YVW  284 (369)
T ss_dssp             EETTEEEEEETTTEEE-EEEE-----BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--E--E--TT-S----EEE
T ss_pred             cccccccccCCCcceE-Eeec-----cccceecccccCCccccchhhcCeEEEEEECCCCccee--ecCCCCc----cEE
Confidence               0111122222110 1111     23333333333346667888888777655433222111  1256665    444


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccC-CCeEEEEecCCCceEecccccee-eeccee
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDINLNCSQDGVLLPMSQSLLK-SKRGRY  378 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~l~~S~dg~~l~~s~s~d~-~~~~w~  378 (612)
                      +...-+   .....+.+.+-... ....++.... ..+..+.|++||+++-+|.-..+ .+.+++
T Consensus       285 vd~~~~---~~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  285 VDTFLN---PDADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             EE-TT----SSHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             eeccCC---CCCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            431111   00233334332222 2223333222 24889999999998834433332 444443

...

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=1.2e-12  Score=139.25  Aligned_cols=254  Identities=16%  Similarity=0.197  Sum_probs=171.9

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCC----cEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~-~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ..|.+++.-=--|..++.+|+.||.||||+- .++    +.+..+.+..+-          ..+..+ ....+.|.... 
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~----------~~~~r~-~~~v~dWqQ~~- 1177 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ----------LPGARG-TGLVVDWQQQS- 1177 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc----------CccCCC-CCeeeehhhhC-
Confidence            3455553333335678999999999999953 332    333333322110          011111 12445676654 


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc---eeEE
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS---LLGK  154 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~---~~~~  154 (612)
                             | .+++++.-..|+|||.....+...+..+....|+++.-+- .|+.++.|..||.|++||.+...   .+..
T Consensus      1178 -------G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1178 -------G-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             -------C-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence                   3 3444444777999999999998888777777888886544 56889999999999999987543   4667


Q ss_pred             EecCCCC--eeEEEECCCCCE-EEEeC--CeEEEEEcCCCee--EEEEecCC--C-CEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          155 FRASTKG--ISCMAVSSDGKM-LATAA--GQLKTFNCSDHKK--MQKFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       155 ~~~~~~~--v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~--~~~~~~h~--~-~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                      ++.|...  |..+.+.+.|-- |++|+  |.|++||++....  ...+..|.  + ..+++..+++...+++++ . +.|
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~i 1327 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLI 1327 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceE
Confidence            7778775  999999886654 88887  9999999998422  22222333  3 589999999999888876 4 899


Q ss_pred             EEEEcCCCcccccee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          225 ALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      +||++.......... -..+........++.|.     |-.-++++|+.|.+|.||.....
T Consensus      1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             EEEecChhhhcccccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence            999987765431110 00111223334677776     88888999999999999986654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.51  E-value=4.8e-13  Score=135.40  Aligned_cols=231  Identities=15%  Similarity=0.204  Sum_probs=159.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ...|+  |++||.||+.+|+|+.|..|.+|+..-...+ .+ .|...                  +.|+.|+|-      
T Consensus        53 KDtVy--cVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~------------------IQCMsFNP~------  104 (1081)
T KOG1538|consen   53 KDTVY--CVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDA------------------IQCMSFNPI------  104 (1081)
T ss_pred             cceEE--EEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCe------------------eeEeecCch------
Confidence            34564  5599999999999999999999986533222 22 24443                  445555444      


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---CC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---ST  159 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~  159 (612)
                         ...+++++- ...-+|+........   ......|.+++|..||++|+-|-.||+|.+-+ ..++....+..   ..
T Consensus       105 ---~h~LasCsL-sdFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~N  176 (1081)
T KOG1538|consen  105 ---THQLASCSL-SDFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSN  176 (1081)
T ss_pred             ---HHHhhhcch-hhccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCC
Confidence               344555544 345678776655432   12456789999999999999999999999987 45655555543   55


Q ss_pred             CCeeEEEECCCC-----CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          160 KGISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       160 ~~v~~l~~spdg-----~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .+|.+++|+|..     ..+++.+  .++.+|.+. |+.+.+-+.-.-...|+.+.++|.+++.+| .|+.+.+|.-+.-
T Consensus       177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~Gv  254 (1081)
T KOG1538|consen  177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDGV  254 (1081)
T ss_pred             CCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc-CCCceEEEeecCe
Confidence            699999999853     4666766  567777663 444433333334457889999999999998 4999999875443


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .      .-+.......+-.+...     |+++.++.|+.||+|-.|++-
T Consensus       255 r------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  255 R------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             E------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhhH
Confidence            2      22333344444455555     999999999999999999853

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=3.3e-12  Score=127.74  Aligned_cols=183  Identities=18%  Similarity=0.277  Sum_probs=142.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC------C
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------T  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------~  159 (612)
                      ..-|++++....|+-+++++|..+..+. ...+.++++..++...+|++|+.+|.|..||.++...+.++...      .
T Consensus       145 scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p  223 (703)
T KOG2321|consen  145 SCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP  223 (703)
T ss_pred             CccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence            3447788888889999999999886663 45688999999998889999999999999999988777666432      2


Q ss_pred             C-----CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEc
Q 007234          160 K-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       160 ~-----~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~  229 (612)
                      +     .|+++.|+.+|-.+++|.  |.+.|||+++.+++..- .+..-+|..+.|.+.  ++.+++.  ....++|||-
T Consensus       224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~  301 (703)
T KOG2321|consen  224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE  301 (703)
T ss_pred             cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence            2     499999999999999998  99999999998876433 344568889999775  4456654  4788999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .+++..     ..+..... +...|+-     |++.+++++..++.+..|=+.
T Consensus       302 ~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  302 CTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcc
Confidence            998754     23333333 4445554     899999999999888777543

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.50  E-value=2.4e-14  Score=120.01  Aligned_cols=82  Identities=30%  Similarity=0.427  Sum_probs=77.5

Q ss_pred             cccccCChhHHHHhhhccChhhHHHHHHHHHHHHh-cCCCCccchHHHHHHHHHHhcccccCC-cChHHHHHHHHHHHHh
Q 007234          484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKVFRS  561 (612)
Q Consensus       484 ~~~~~~~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~-~~~~~~~~~~~W~~~ll~~H~~~l~s~-~~l~~~L~~l~~~l~~  561 (612)
                      +|++.+|+++|++|+++||++|+.+||++|+++++ +++.+.|++++|++++|+.||+||++. +++++.|..|++.+++
T Consensus         8 ~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~   87 (110)
T PF04003_consen    8 EVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE   87 (110)
T ss_pred             HHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999999999999998 777889999999999999999999999 9999999999999999


Q ss_pred             hccc
Q 007234          562 ASCK  565 (612)
Q Consensus       562 r~~~  565 (612)
                      |.+.
T Consensus        88 ~~~~   91 (110)
T PF04003_consen   88 RLQN   91 (110)
T ss_pred             HHHH
Confidence            8665

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.48  E-value=4.4e-12  Score=117.58  Aligned_cols=132  Identities=18%  Similarity=0.327  Sum_probs=99.6

Q ss_pred             CcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEE--ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCC
Q 007234           96 GDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK  172 (612)
Q Consensus        96 g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~  172 (612)
                      |...+|-++.. .....+.....++|.+++|+|+|+.|+++  ..++.|.+||++ ++.+..+.  ...+..+.|+|+|+
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR  113 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence            34555555322 22223322345679999999999987654  357799999996 66666664  46778999999999


Q ss_pred             EEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC-----CCeEEEEEcCCC
Q 007234          173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV  232 (612)
Q Consensus       173 ~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~-----d~~i~vwd~~~~  232 (612)
                      ++++++     |.|.+||+++.+.+.++. |. .++.++|+|+|++++++...     |..++||+....
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999886     579999999998887765 33 47899999999999998753     678999998644

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1e-12  Score=128.94  Aligned_cols=290  Identities=18%  Similarity=0.248  Sum_probs=195.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.+-|+.+  .|...|..|++||.|.+|.+||+..+.....|.+                ||....+..- |.|...   
T Consensus       141 H~GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~NvfQaK-FiP~s~---  198 (559)
T KOG1334|consen  141 HKGCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVFQAK-FIPFSG---  198 (559)
T ss_pred             CCCcccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchhhhh-ccCCCC---
Confidence            35667767  9999999999999999999999999988776631                3332222222 444432   


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCC-CeEE-EEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEe--
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSA-GQLK-WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR--  156 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~-~~~~-~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~--  156 (612)
                          ..-+++++.||.|++=.+.. +.+. ......|.++|.-++.-|+..+ |.+++.|+.+.-+|++.+.+...+.  
T Consensus       199 ----d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  199 ----DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             ----CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence                56689999999998876643 3332 2333579999999999997654 9999999999999998876544432  


Q ss_pred             -cCCC---CeeEEEECCCCC-EEEEeC--CeEEEEEcCCCe------eEEEEec------CCCCEEEEEEeeCCcEEEEE
Q 007234          157 -ASTK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSG------HPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       157 -~~~~---~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~------~~~~~~~------h~~~v~~l~~sp~~~~l~s~  217 (612)
                       .+..   ....++..|... .+++++  .-+++||.+.-.      .+.++-.      ..-.|++++|+.++.-++++
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence             2333   678899999776 566666  578999876421      2233322      23458999999776656655


Q ss_pred             EcCCCeEEEEEcCCCcc----------ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          218 AVGERYIALWRTDGVKK----------QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      - .|-.|+++.-.-+..          ...++++...-....+..+-|-    .|...++++|+.=|.|.||+-.+++.+
T Consensus       355 Y-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf----GPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  355 Y-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF----GPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             e-cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeec----cCccceEEecCccceEEEEecchhHHH
Confidence            3 688899985433221          0011112211112223334332    288999999999999999999999999


Q ss_pred             cccCCceeEeecccccCCCCcccchhhhcccccceecCCC
Q 007234          288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (612)
Q Consensus       288 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~  327 (612)
                      +-....+..+.|..   |...  .+.+++++.+.-+++|.
T Consensus       430 ~~MegDr~VVNCLE---pHP~--~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  430 RFMEGDRHVVNCLE---PHPH--LPVLASSGIDHDVKIWT  464 (559)
T ss_pred             HHhhcccceEeccC---CCCC--CchhhccCCccceeeec
Confidence            88777777666643   2222  45777777776555544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.47  E-value=1.8e-13  Score=127.76  Aligned_cols=226  Identities=14%  Similarity=0.134  Sum_probs=157.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      -|+|||+|+|+|+++.- ++.|=|..+-+..+.|..                   -..+.-+.|....        -..+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-------------------ldki~yieW~ads--------~~il   64 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-------------------LDKIVYIEWKADS--------CHIL   64 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-------------------HHHhhheeeeccc--------eeee
Confidence            46999999999999855 788889888776655432                   1123345665442        3456


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                      .....++.|.+|++.+.+-..++. ....++.+++|||||+. |.+...|-.|.+|.+.+.+.... +-.+..+..++|+
T Consensus        65 C~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   65 CVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFH  142 (447)
T ss_pred             eeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEEC
Confidence            667788999999999998877774 45678999999999966 55566799999999987665433 3334567899999


Q ss_pred             CCCCEEEEeC-C----eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234          169 SDGKMLATAA-G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (612)
Q Consensus       169 pdg~~l~~~~-g----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (612)
                      |||++.+..+ .    -+.+..-+.-..++.+.-.+...+.+.|+|||..++.   +|..+       .-     .++ .
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---wd~~L-------ey-----kv~-a  206 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---WDNVL-------EY-----KVY-A  206 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---ecchh-------hh-----eee-e
Confidence            9999999887 1    2333323333456666666777889999999987765   23211       10     001 1


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      .+-+..+..+.++     |.++++++|+.|+.+++.+--+.+.
T Consensus       207 Ye~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  207 YERGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             eeeccceeEEEec-----cccceEEeeccchhhhhhceeeeee
Confidence            1222334456676     8899999999999999977544443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=4.4e-12  Score=121.53  Aligned_cols=149  Identities=16%  Similarity=0.219  Sum_probs=126.9

Q ss_pred             CcEEEEEECC--CcEEEEEcCCCeEEEEeccCC--------CCCeEEEEEecC--CCEEEEEecCCcEEEEECCCC-cee
Q 007234           86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCH--------PGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLL  152 (612)
Q Consensus        86 ~~~l~~gs~~--g~I~vwd~~~~~~~~~~~~~h--------~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~-~~~  152 (612)
                      ..++++|+..  ..+.+||+++.+.+++-..--        .-.++++.|-+.  ...|++++.-+.|++||.+.+ +++
T Consensus       161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence            4567778888  779999999987766542211        123578889886  778999999999999999877 567


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      ..|...+.+++++...|+|+++++|.  |.+..||.++++.... +.|-.+.|+++..+|.+++++++| -|+.++|+|+
T Consensus       241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~  319 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDI  319 (412)
T ss_pred             eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeec
Confidence            78888888999999999999999998  9999999999998776 889999999999999999999998 6999999999


Q ss_pred             CCCccc
Q 007234          230 DGVKKQ  235 (612)
Q Consensus       230 ~~~~~~  235 (612)
                      .+.+..
T Consensus       320 ktrkll  325 (412)
T KOG3881|consen  320 KTRKLL  325 (412)
T ss_pred             ccchhh
Confidence            996544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.47  E-value=4.5e-14  Score=146.29  Aligned_cols=240  Identities=18%  Similarity=0.166  Sum_probs=171.2

Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee
Q 007234          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (612)
Q Consensus       114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~  191 (612)
                      .+|...|+|..|...|.++++|+.|..|++|.+.++.++....+|.+.++.++.+.+..++++++  ..|++|-+..+.+
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            47999999999999999999999999999999999999999999999999999999998999888  5799999999999


Q ss_pred             EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234          192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       192 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s  271 (612)
                      +..+.||++.|++++|+|-.    +++ .||++++||.+-........-..+ ..........|.     .++..+++++
T Consensus       267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~-----~~~~~f~Tgs  335 (1113)
T KOG0644|consen  267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFE-----NNGDRFLTGS  335 (1113)
T ss_pred             HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccccCCCCCCc-ccccceeeeecc-----cccccccccc
Confidence            99999999999999999964    444 799999999882211100000111 122333444454     6778899999


Q ss_pred             cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCC
Q 007234          272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE  351 (612)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~  351 (612)
                      .|+.-..|...-..-   .....+-+.    ++.+..   ...+++..+-....|+    +..    ......+.+|...
T Consensus       336 ~d~ea~n~e~~~l~~---~~~~lif~t----~ssd~~---~~~~~ar~~~~~~vwn----l~~----g~l~H~l~ghsd~  397 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAW---RSNLLIFVT----RSSDLS---SIVVTARNDHRLCVWN----LYT----GQLLHNLMGHSDE  397 (1113)
T ss_pred             CCcccccchhhHhhh---hccceEEEe----cccccc---ccceeeeeeeEeeeee----ccc----chhhhhhcccccc
Confidence            999988887532211   010111111    011111   0223333322222211    112    2223466789889


Q ss_pred             eEEEEecCCCceEeccccceeeecceeeecc
Q 007234          352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       352 v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                      +..+.+.|-...+.+++++|++.-+|++...
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence            9999999988877799999999999998543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=1.2e-10  Score=108.97  Aligned_cols=175  Identities=17%  Similarity=0.295  Sum_probs=124.3

Q ss_pred             CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC
Q 007234           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG  106 (612)
Q Consensus        27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~  106 (612)
                      +.|.|||=...+++.++. ..++|.++.+.+                             .. ++.-..+.|.||...++
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r-----------------------------~r-iVvvl~~~I~VytF~~n  123 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRR-----------------------------DR-IVVVLENKIYVYTFPDN  123 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcC-----------------------------Ce-EEEEecCeEEEEEcCCC
Confidence            479999977777777764 233333333332                             22 33445678999998744


Q ss_pred             -eEEEEecc-CCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCce--eEEEecCCCCeeEEEECCCCCEEEEeC--C
Q 007234          107 -QLKWRLSD-CHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--G  179 (612)
Q Consensus       107 -~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~~~~--g  179 (612)
                       +.+..+.. .....+.+++-+.+...|+.- -.-|.|++-|+...+.  ...+.+|...|.|++.+-+|..+|+++  |
T Consensus       124 ~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG  203 (346)
T KOG2111|consen  124 PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG  203 (346)
T ss_pred             hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence             33333321 123344444433343444433 3568999999876655  577899999999999999999999999  5


Q ss_pred             -eEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          180 -QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       180 -~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                       .|+|||..+|..+.+++.-  ...|.+|+|||++.+|++++ +.|++.||.++...
T Consensus       204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence             6899999999999998632  35699999999999999887 79999999987643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=6.2e-11  Score=120.96  Aligned_cols=193  Identities=18%  Similarity=0.214  Sum_probs=133.9

Q ss_pred             CcEEE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           86 SSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        86 ~~~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      +++++ +-..+|.|.+.|..+.+.+.++..+ ...-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            44554 4556789999999999999888543 2334557899999999999999999999999999999998644 4688


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC-------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      +++++||++++++.   +.+.++|.++.++++.++..       ...+..+..+|....++..-.+.+.|.+-|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999999887   89999999999999888643       346788888998886666554457777777766543


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCCcceecc
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~~~~~~~  289 (612)
                      .   ..... .......-..++     |++++++++ ..++.|-++|.++++.+..
T Consensus       163 ~---~~~~i-~~g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  163 L---KVTTI-KVGRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             E---EEEEE-E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             c---ceeee-cccccccccccC-----cccceeeecccccceeEEEeeccceEEEE
Confidence            2   11222 223333445666     999987765 4577999999998877643

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.43  E-value=5.1e-12  Score=118.06  Aligned_cols=200  Identities=12%  Similarity=0.152  Sum_probs=152.3

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      .+||+  |.||++|++.+|.+.....|.||.....+   ..++++.|..                  ..+++.|.+.   
T Consensus        10 ~~pit--chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~------------------~vtgvdWap~---   66 (361)
T KOG1523|consen   10 LEPIT--CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK------------------IVTGVDWAPK---   66 (361)
T ss_pred             cCcee--eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc------------------ceeEEeecCC---
Confidence            36774  55999999999999999999999887665   4555655544                  3455666665   


Q ss_pred             cccccCCcEEEEEECCCcEEEEEc-CCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce----e
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAV-SAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----L  152 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~-~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~----~  152 (612)
                            .+.|++|+.|.+-+||.. ..+.-  ...+ ..|....+++.|+|.++.|++||.-..|.+|=++...-    .
T Consensus        67 ------snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   67 ------SNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             ------CCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence                  567999999999999998 44432  2223 35888999999999999999999999998887654321    1


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEc-----CC-------------CeeEEEEecCCCCEEEEEEeeCCc
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGK  212 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~-----~~-------------~~~~~~~~~h~~~v~~l~~sp~~~  212 (612)
                      +.-+.++..|+++.|+|++-+|++|+  +..++|..     +.             |+++.++....+.|..+.|+|+|.
T Consensus       140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            12233567899999999999999998  77777753     21             233445545678899999999999


Q ss_pred             EEEEEEcCCCeEEEEEcCCCc
Q 007234          213 YVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       213 ~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      .|+-.+ .|..+.+-|.....
T Consensus       220 ~lawv~-Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  220 RLAWVG-HDSTVSFVDAAGPS  239 (361)
T ss_pred             EeeEec-CCCceEEeecCCCc
Confidence            999998 79999999987765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=7.8e-11  Score=124.51  Aligned_cols=215  Identities=18%  Similarity=0.190  Sum_probs=141.7

Q ss_pred             CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---CCcEEEEEc
Q 007234           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV  103 (612)
Q Consensus        27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---~g~I~vwd~  103 (612)
                      ..|.+||.... ....+..+...+....|+++                           ++.|+..+.   +..|++||+
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpD---------------------------G~~lay~s~~~g~~~i~~~dl  233 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPN---------------------------RQEITYMSYANGRPRVYLLDL  233 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeEECCC---------------------------CCEEEEEEecCCCCEEEEEEC
Confidence            37888898544 44445555555555555554                           666666553   346999999


Q ss_pred             CCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCc--EEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--
Q 007234          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (612)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--  178 (612)
                      .+++.. .+ ..+.+.+.+.+|+|||+.|+ +.+.++.  |++||+.+++. ..+..+........|+|||+.++..+  
T Consensus       234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence            988764 23 34566788999999998865 5555554  78889887765 34554555667899999999888765  


Q ss_pred             -C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234          179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (612)
Q Consensus       179 -g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (612)
                       |  .|++||+.+++. ..+..+...+....|+|+|++++..+...  ..|.+||+.++...    .  +.... .....
T Consensus       311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----~--lt~~~-~~~~p  382 (435)
T PRK05137        311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----I--LTSGF-LVEGP  382 (435)
T ss_pred             CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE----e--ccCCC-CCCCC
Confidence             2  789999877654 34444455667789999999998876322  36888887655322    1  11111 22344


Q ss_pred             EecCCccCCCCcEEEEEecC------CcEEEEECCCcc
Q 007234          254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNIE  285 (612)
Q Consensus       254 ~~~~~~~~~~~~~l~t~s~d------g~i~iwd~~~~~  285 (612)
                      .|+     |||++|+..+.+      ..++++|+..+.
T Consensus       383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            565     999998776553      257777775543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.42  E-value=8.3e-12  Score=116.65  Aligned_cols=206  Identities=8%  Similarity=0.058  Sum_probs=154.2

Q ss_pred             ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEE
Q 007234           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC  142 (612)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~  142 (612)
                      ...++|.+|.+.         ...++++..+..|.||....++  .....+..|...|+++.|+|..+.|++|+.|..-+
T Consensus        10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen   10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            346778888776         7789999999999999998776  22334467999999999999999999999999999


Q ss_pred             EEECCC-C--ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE----EEEecCCCCEEEEEEeeCCcE
Q 007234          143 EIDPLT-G--SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       143 iwd~~~-~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~  213 (612)
                      +|.... +  ++.-.+..+...++++.|+|.++.+|+|+  ..|.||-++...--    ..-..+.+.|+++.|+|++-+
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            999833 3  34445556788999999999999999999  57788776543211    111346788999999999988


Q ss_pred             EEEEEcCCCeEEEEEcCCCcc-----c-------c-ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          214 VLSSAVGERYIALWRTDGVKK-----Q-------S-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~-----~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      +++++ .|+.++|+...-...     .       . ...+.........+..+.|+     |+|..|+-.+.|..+.+=|
T Consensus       161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence            88876 799999997532110     0       0 00111222344556777787     9999999999999999988


Q ss_pred             CCCcc
Q 007234          281 GQNIE  285 (612)
Q Consensus       281 ~~~~~  285 (612)
                      .....
T Consensus       235 a~~p~  239 (361)
T KOG1523|consen  235 AAGPS  239 (361)
T ss_pred             cCCCc
Confidence            76554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=4.5e-11  Score=125.65  Aligned_cols=191  Identities=16%  Similarity=0.196  Sum_probs=126.7

Q ss_pred             eEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234            9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus         9 l~~~fspdg~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      ...+|||||+.||..+.   +..|.+||+.+|+..... ...+...                  ...|.|.         
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~------------------~~~~SPD---------  253 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNG------------------APAFSPD---------  253 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcC------------------CeEECCC---------
Confidence            45699999999987653   457999999888654322 1111111                  2344443         


Q ss_pred             CcEEEEE-ECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-C--cEEEEECCCCceeEEEecCC
Q 007234           86 SSLLVLG-TGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~g-s~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~  159 (612)
                      ++.|+.. +.+|.  |++||+.+++.. .+.. +...+....|+|||+.|+.++.+ +  .|+.+|+.+++. ..+....
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~  330 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEG  330 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEE-EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCC
Confidence            5555544 55554  899999988765 3333 44567899999999988777654 4  455557776654 3333344


Q ss_pred             CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC---eEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~---~i~vwd~~~  231 (612)
                      ....+..|+|||++++..+     ..|++||+.+++. ..+... .......|+|||+.++.++ .++   .+.+++++.
T Consensus       331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G  407 (429)
T PRK03629        331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDG  407 (429)
T ss_pred             CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCC
Confidence            4566789999999998764     3689999988864 334322 2334678999999999887 454   366777755


Q ss_pred             Cc
Q 007234          232 VK  233 (612)
Q Consensus       232 ~~  233 (612)
                      ..
T Consensus       408 ~~  409 (429)
T PRK03629        408 RF  409 (429)
T ss_pred             CC
Confidence            43

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5.2e-11  Score=125.18  Aligned_cols=233  Identities=10%  Similarity=0.014  Sum_probs=145.8

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~  173 (612)
                      .|.++|...+... .+ ..+...+.+.+|+|||+.|+..+.   +..|++||+.+++.... ......+..++|+|||+.
T Consensus       180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence            5889998766543 23 235678999999999999886542   45799999988864332 223344567899999998


Q ss_pred             EEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE--EcCCCccccceeeEeecCC
Q 007234          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~  246 (612)
                      |+...   |  .|++||+++++.. .+..+...+....|+|||+.++.++..++...+|  ++.++...      .+...
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------~lt~~  329 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------RITWE  329 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------EeecC
Confidence            88652   3  6999999988654 4444555678899999999888776444444455  66555422      11111


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~  323 (612)
                      ........++     |||++++..+.+   ..|.+||+.+++...-....  . .....++|+++    .|+.++.++..
T Consensus       330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~-~~~p~~SpDG~----~i~~~s~~~~~  397 (429)
T PRK03629        330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--L-DETPSIAPNGT----MVIYSSSQGMG  397 (429)
T ss_pred             CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--C-CCCceECCCCC----EEEEEEcCCCc
Confidence            2222345566     999998887653   35888998887543211111  1 11233788888    66666655421


Q ss_pred             cCCCceEEE--EeCCccCceEEEeeccCCCeEEEEecC
Q 007234          324 KPASVHTFV--AYGLLLKPSFQKILVNSGEDINLNCSQ  359 (612)
Q Consensus       324 ~~~~~~~~~--~~g~~~~~~~~~~~~h~~~v~~l~~S~  359 (612)
                          ..+.+  .+|..    ...+..|.+.+...+|||
T Consensus       398 ----~~l~~~~~~G~~----~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        398 ----SVLNLVSTDGRF----KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ----eEEEEEECCCCC----eEECccCCCCcCCcccCC
Confidence                11111  12322    234556666677777776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=7e-11  Score=124.73  Aligned_cols=214  Identities=14%  Similarity=0.086  Sum_probs=140.1

Q ss_pred             CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC---CcEEEEEc
Q 007234           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV  103 (612)
Q Consensus        27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~---g~I~vwd~  103 (612)
                      .+|.+||...+ ..+.+..+...+....|+++                           ++.|+..+..   ..|++||+
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl  235 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL  235 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence            36899998644 34445545555555556555                           6667766633   35999999


Q ss_pred             CCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCC--cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--
Q 007234          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (612)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--  178 (612)
                      .+++... + ..+.+...++.|+|||+.++ +.+.+|  .|++||+.+++.. .+..+.......+|+|||+.++.++  
T Consensus       236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence            9887642 2 23445556889999998765 555555  5999999887653 3444444557789999999888765  


Q ss_pred             -C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234          179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (612)
Q Consensus       179 -g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (612)
                       |  .|+++|+.+++.. .+..+......++|+|+|++++..+..++  .|.+||+.+++..      .+.+... ....
T Consensus       313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------~Lt~~~~-~~~p  384 (433)
T PRK04922        313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------TLTPGSL-DESP  384 (433)
T ss_pred             CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------ECCCCCC-CCCc
Confidence             3  5888888777643 33333344557899999999887653332  6899999877533      1122111 1223


Q ss_pred             EecCCccCCCCcEEEEEecC---CcEEEEECCCc
Q 007234          254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQNI  284 (612)
Q Consensus       254 ~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~  284 (612)
                      .|+     |||++++..+.+   +.|.+++...+
T Consensus       385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        385 SFA-----PNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             eEC-----CCCCEEEEEEecCCceEEEEEECCCC
Confidence            455     999988877663   35777777543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.40  E-value=4.1e-11  Score=110.56  Aligned_cols=205  Identities=10%  Similarity=0.135  Sum_probs=146.7

Q ss_pred             cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC--eEE-EEe-----ccCCCCCeEEEEEec-CCCEEEEEe
Q 007234           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLK-WRL-----SDCHPGGVSAISFAT-HGSCIYSAG  136 (612)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~--~~~-~~~-----~~~h~~~V~~l~~sp-~~~~l~s~s  136 (612)
                      ...+.+.|.|......    ..  ..++.+..+++|.+...  +.. ...     ...+..+++++.|+. +-+++.++|
T Consensus        97 YP~tK~~wiPd~~g~~----pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVY----PD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCccceEecCCccccC----cc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4556777777652100    22  34556667999998742  211 111     134678999999987 667899999


Q ss_pred             cCCcEEEEECCCCce---eEEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEE
Q 007234          137 ADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTF  207 (612)
Q Consensus       137 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~  207 (612)
                      -|-+..+||++++..   ...+-+|...|..++|...+. .+|+.+  |++++||++..+.-..+   +....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            999999999998743   445778999999999998665 455555  99999999876543333   233457788999


Q ss_pred             eeCC-cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          208 SDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       208 sp~~-~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ++.. +++++-......|.+.|++....    .+..+..+...+..++|.+    ..+.++++++.|..+.+||+...
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCc----ceehhhcCcccccceEecC----CCCceeeecCCcceEEEEecccc
Confidence            8754 57777765567899999998753    3566677777777777762    45678999999999999998643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.1e-10  Score=110.90  Aligned_cols=255  Identities=15%  Similarity=0.182  Sum_probs=158.5

Q ss_pred             CcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCC-CcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +..|.  |++|-|.+ .-||.|+..| |.||.... +..-.... ..+.....++..+   ||  ..++.+.|..+    
T Consensus       140 Qrnvt--clawRPlsaselavgCr~g-IciW~~s~tln~~r~~~-~~s~~~~qvl~~p---gh--~pVtsmqwn~d----  206 (445)
T KOG2139|consen  140 QRNVT--CLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR-MMSTHHLQVLQDP---GH--NPVTSMQWNED----  206 (445)
T ss_pred             hccee--EEEeccCCcceeeeeecce-eEEEEcCcccccccccc-cccccchhheeCC---CC--ceeeEEEEcCC----
Confidence            45664  45999965 6788888765 78997642 21111111 1111111122222   33  57888999876    


Q ss_pred             ccccCCcEEEEEECC-CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           81 KRKLGSSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                           +..+++++-+ ..|.|||+.++..+.-. ...-+.++-+.|||||.+|+.+.-|+..++|+.........+....
T Consensus       207 -----gt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs  280 (445)
T KOG2139|consen  207 -----GTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS  280 (445)
T ss_pred             -----CCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence                 5667776654 55999999999886433 3355789999999999999999999999999654433333333345


Q ss_pred             CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe---------------eEEEE------ec---CCCCEEEEEEeeCCcEE
Q 007234          160 KGISCMAVSSDGKMLATAA-GQLKTFNCSDHK---------------KMQKF------SG---HPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~---------------~~~~~------~~---h~~~v~~l~~sp~~~~l  214 (612)
                      +.|...+|+|+|+.|+.+. |.=.+|.+.-..               .+..+      .+   --+++.+++|.|.|.+|
T Consensus       281 grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyL  360 (445)
T KOG2139|consen  281 GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYL  360 (445)
T ss_pred             CceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEE
Confidence            6899999999999887665 766666553110               01111      11   13578899999999999


Q ss_pred             EEEEcCCC--------eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          215 LSSAVGER--------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       215 ~s~s~~d~--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ++.- ..+        .|.+||.+..-...  ..+-..........++|.+..  .++.+|..+=..|.+.-|++
T Consensus       361 av~f-Kg~~~v~~~k~~i~~fdtr~sp~ve--ls~cg~i~ge~P~~IsF~pl~--n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  361 AVIF-KGQSFVLLCKLHISRFDTRKSPPVE--LSYCGMIGGEYPAYISFGPLK--NEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             EEEE-cCCchhhhhhhhhhhhcccccCceE--EEecccccCCCCceEEeeecc--cCCcEEEEEeccCceEeeee
Confidence            9864 222        35667765543221  110000111113444454332  67788888777888888875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=4.2e-11  Score=114.88  Aligned_cols=190  Identities=10%  Similarity=0.084  Sum_probs=142.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeE----EEEeccCCCCCeEEEEEecCCCE-EEEEecC--CcEEEEECCCCceeEEEecC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSC-IYSAGAD--GMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~d--g~v~iwd~~~~~~~~~~~~~  158 (612)
                      +..|++|..+|.+.+|....+..    +..+  ....++..+.-++..+. +++|+..  ..+.+||+...+++..-+..
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            66799999999999999985542    1122  12356777777775555 5558877  78999999887554443221


Q ss_pred             C---------CCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          159 T---------KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       159 ~---------~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                      .         -.++.+.|-+.  ...++++.  +.+++||.+.+ +++.+|.--..+++++...|++++++++. .-+.+
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l  271 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQL  271 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchh
Confidence            1         24678899887  78888888  89999999876 57888888899999999999999999886 68999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      ..||++.++..    ...+..-...++.+...     |.+.++++++.|..++|+|+++.+.+
T Consensus       272 ~~FD~r~~kl~----g~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  272 AKFDLRGGKLL----GCGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             heecccCceee----ccccCCccCCcceEEEc-----CCCceEEeeccceeEEEeecccchhh
Confidence            99999998754    12233333344444444     88899999999999999999886554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=7.7e-11  Score=123.97  Aligned_cols=201  Identities=17%  Similarity=0.155  Sum_probs=128.2

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~  173 (612)
                      .|.++|..... ...+ ..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+...+.+|+|||+.
T Consensus       177 ~L~~~D~dG~~-~~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        177 QLQISDADGQN-AQSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEEECCCCCC-ceEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            47777774433 3233 2467789999999999998877643   359999999887643 3333455678999999998


Q ss_pred             EEEe-C--C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC--CCccccceeeEeecCC
Q 007234          174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHP  246 (612)
Q Consensus       174 l~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~  246 (612)
                      |+.. +  |  .|+++|+.++. ...+..+........|+|||+.++..+..++...+|.+.  ++...   . ....  
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~-lt~~--  326 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---R-VTFT--  326 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---E-EecC--
Confidence            8753 3  4  46666666554 455665666667789999999888776445666677654  33321   1 1111  


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~  319 (612)
                      ........|+     |||++|+..+.++   .|.+||+.+++...-.....   .....++|+++    .|+.+..
T Consensus       327 g~~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~---~~~p~~spdg~----~l~~~~~  390 (427)
T PRK02889        327 GSYNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTR---DESPSFAPNGR----YILYATQ  390 (427)
T ss_pred             CCCcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCC---ccCceECCCCC----EEEEEEe
Confidence            1111234565     9999998877654   69999998876432221111   11223778877    4555444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=2.1e-09  Score=109.81  Aligned_cols=241  Identities=16%  Similarity=0.211  Sum_probs=152.9

Q ss_pred             EEEcCCCCEEEEEeC----CCcEEEEECCCC--cEEE--EeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234           11 TSFSPALDYFAICSG----DARIKIWDTLKG--QVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        11 ~~fspdg~~las~s~----dg~i~iwd~~~~--~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ++++|++++|.++..    +|.|..|++...  ++..  +......                  ....+. ..++     
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~------------------~p~~i~-~~~~-----   97 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS------------------SPCHIA-VDPD-----   97 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS------------------CEEEEE-ECTT-----
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC------------------CcEEEE-EecC-----
Confidence            389999999988876    468988887653  3322  2211111                  111112 1112     


Q ss_pred             ccCCcEEEEEE-CCCcEEEEEcCC-CeEEEE--ec----------cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECC
Q 007234           83 KLGSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL  147 (612)
Q Consensus        83 ~~~~~~l~~gs-~~g~I~vwd~~~-~~~~~~--~~----------~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~  147 (612)
                         +++++++. .+|.|.++++.. |.....  ..          ........++.|+|+|++++++.. ...|.+|++.
T Consensus        98 ---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~  174 (345)
T PF10282_consen   98 ---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID  174 (345)
T ss_dssp             ---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred             ---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence               67777776 578899999987 433222  11          112355789999999999888753 4479999887


Q ss_pred             CCc--e--eEEEec-CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC--CCe--eEEEEecC------CCCEEEEEEee
Q 007234          148 TGS--L--LGKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHK--KMQKFSGH------PGAVRFMTFSD  209 (612)
Q Consensus       148 ~~~--~--~~~~~~-~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~~--~~~~~~~h------~~~v~~l~~sp  209 (612)
                      ...  .  ...+.. .......++|+|+|+++++..   +.|.++++.  ++.  .+..+...      ......|.++|
T Consensus       175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp  254 (345)
T PF10282_consen  175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP  254 (345)
T ss_dssp             TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred             CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence            654  3  223333 334789999999999998876   799999988  443  23333211      12578899999


Q ss_pred             CCcEEEEEEcCCCeEEEEEcCC--CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEEC--CCc
Q 007234          210 NGKYVLSSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNI  284 (612)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~--~~~  284 (612)
                      ||++|+++......|.+|+++.  +...   .+............+.++     |+|++|++++. ++.|.+|+.  ++|
T Consensus       255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  255 DGRFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             TSSEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CCCEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCC
Confidence            9999998877788999999943  3322   222333333335566676     99999999875 678999975  455


Q ss_pred             ce
Q 007234          285 EE  286 (612)
Q Consensus       285 ~~  286 (612)
                      ..
T Consensus       327 ~l  328 (345)
T PF10282_consen  327 KL  328 (345)
T ss_dssp             EE
T ss_pred             cE
Confidence            54

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=4.1e-11  Score=114.50  Aligned_cols=163  Identities=15%  Similarity=0.180  Sum_probs=127.3

Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC------CCceeEEEec-CCCCeeEEEECCCCCEEEEeC--CeEEEE
Q 007234          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL------TGSLLGKFRA-STKGISCMAVSSDGKMLATAA--GQLKTF  184 (612)
Q Consensus       114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~------~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~--g~i~lw  184 (612)
                      .+|.+.|.++.|+.++++|++|+.|..+++|++.      +.+++..... |...|.|++|...++.+++|.  ++|.+.
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            4799999999999999999999999999999975      3456665544 447899999999999999998  899999


Q ss_pred             EcCCCeeEEEEecCC---CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccC
Q 007234          185 NCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD  261 (612)
Q Consensus       185 d~~~~~~~~~~~~h~---~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (612)
                      |+++.+.+..+. |.   +.|..+..+|..+.|++.+ .++.|.+||.+..... ...+.....+..+.+ +.|.+    
T Consensus       133 DiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~~-~~~~~~AN~~~~F~t-~~F~P----  204 (609)
T KOG4227|consen  133 DIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQNP-ISLVLPANSGKNFYT-AEFHP----  204 (609)
T ss_pred             ecccceeeeeec-ccCcccceeecccCCCCceEEEEe-cCceEEEEeccCCCCC-CceeeecCCCcccee-eeecC----
Confidence            999998887774 44   5899999999988888887 7999999999876522 112222233344433 44542    


Q ss_pred             CCCcEEEEEecCCcEEEEECCCc
Q 007234          262 DAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       262 ~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ....+|++.+..|-+-+||.+..
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             CCceeEEeccccCCCCceeeccc
Confidence            34578888899999999997654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.1e-10  Score=122.90  Aligned_cols=211  Identities=14%  Similarity=0.094  Sum_probs=130.2

Q ss_pred             CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC---CcEEEEEc
Q 007234           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV  103 (612)
Q Consensus        27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~---g~I~vwd~  103 (612)
                      ..|.+||.. |.....+..+...+....|+++                           ++.|+..+..   ..|++||+
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~I~~~dl  227 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPD---------------------------GTKLAYVSFESKKPVVYVHDL  227 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCC---------------------------CCEEEEEEccCCCcEEEEEEC
Confidence            357777874 4444444444444444555544                           6667666532   34999999


Q ss_pred             CCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEE--ECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--
Q 007234          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (612)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iw--d~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--  178 (612)
                      .+++... + ....+.+.+..|+|||+.|+ +.+.+|...+|  |+..+. ...+..+........|+|||+.++..+  
T Consensus       228 ~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~  304 (427)
T PRK02889        228 ATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR  304 (427)
T ss_pred             CCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC
Confidence            9887642 2 22345567899999999876 56677776665  554444 444554555567789999999888655  


Q ss_pred             -Ce--EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234          179 -GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (612)
Q Consensus       179 -g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (612)
                       |.  |+.+++.+++. ..+..+........|+|||++++.++..++  .|.+||+.+++..   .   +..... ....
T Consensus       305 ~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~---lt~~~~-~~~p  376 (427)
T PRK02889        305 GGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---A---LTDTTR-DESP  376 (427)
T ss_pred             CCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---E---ccCCCC-ccCc
Confidence             44  55555555543 222222333446789999999987763222  6999999887533   1   111111 1334


Q ss_pred             EecCCccCCCCcEEEEEecCC---cEEEEEC
Q 007234          254 CIDNGGVDDAGLYVLAISETG---VCYIWYG  281 (612)
Q Consensus       254 ~~~~~~~~~~~~~l~t~s~dg---~i~iwd~  281 (612)
                      .|+     |||++|+.++.++   .+.+.+.
T Consensus       377 ~~s-----pdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        377 SFA-----PNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             eEC-----CCCCEEEEEEecCCCEEEEEEEC
Confidence            565     9999988887644   3444455

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1e-10  Score=123.60  Aligned_cols=195  Identities=15%  Similarity=0.163  Sum_probs=131.1

Q ss_pred             cccceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      .++  .+.+|||||+.|+..+.   +..|.+||+.+|+... +..+.+.+....|+++                      
T Consensus       202 ~~v--~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPD----------------------  256 (435)
T PRK05137        202 SLV--LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPD----------------------  256 (435)
T ss_pred             CCe--EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCC----------------------
Confidence            355  45599999999998764   4689999999887643 3333333333334433                      


Q ss_pred             ccccCCcEE-EEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEE
Q 007234           81 KRKLGSSLL-VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGK  154 (612)
Q Consensus        81 ~~~~~~~~l-~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~  154 (612)
                           ++.| ++.+.+|.  |++||+.++... .+ ..+........|+|||+.++.++. +|  .|++||+..++.. .
T Consensus       257 -----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~  328 (435)
T PRK05137        257 -----GRKVVMSLSQGGNTDIYTMDLRSGTTT-RL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R  328 (435)
T ss_pred             -----CCEEEEEEecCCCceEEEEECCCCceE-Ec-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence                 5545 45566665  888899888764 34 345566778999999998887763 33  6888898766543 3


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC-----CeE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYI  224 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d-----~~i  224 (612)
                      +..+...+....|+|||+.++...     ..|.+||+.++.. +.+. ....+..+.|+|||+.++..+...     ..+
T Consensus       329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L  406 (435)
T PRK05137        329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL  406 (435)
T ss_pred             eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence            433445567789999999998764     2688899866543 3333 223467789999999887765322     256


Q ss_pred             EEEEcCCCc
Q 007234          225 ALWRTDGVK  233 (612)
Q Consensus       225 ~vwd~~~~~  233 (612)
                      .++|+..+.
T Consensus       407 ~~~dl~g~~  415 (435)
T PRK05137        407 YTVDLTGRN  415 (435)
T ss_pred             EEEECCCCc
Confidence            777776554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=5.2e-11  Score=125.72  Aligned_cols=176  Identities=11%  Similarity=0.077  Sum_probs=121.5

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~  173 (612)
                      .|.+||...+... .+ ..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++... +....+...+.+|+|||+.
T Consensus       185 ~l~i~D~~g~~~~-~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        185 ALQVADSDGYNPQ-TI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEECCCCCCce-Ee-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            4889998655443 34 2466789999999999998887643   469999998876543 3333445567899999998


Q ss_pred             EEEe-C--C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe--EEEEEcCCCccccceeeEeecCC
Q 007234          174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       174 l~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      ++.. +  |  .|++||+.+++. ..+..+.......+|+|||++++.++..++.  |.++++.+++..   . ... ..
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~-lt~-~g  335 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---R-LTF-QG  335 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---E-eec-CC
Confidence            7643 2  3  799999988864 4556666666788999999998887644444  666666665432   1 111 11


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCccee
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL  287 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~~  287 (612)
                       .......|+     |||++|+..+.++   .|.+||+.+++..
T Consensus       336 -~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        336 -NYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             -CCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence             122235566     9999998876543   6999999877643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=6.7e-11  Score=109.69  Aligned_cols=152  Identities=16%  Similarity=0.238  Sum_probs=106.7

Q ss_pred             EEEEEecCCCEEEEEec---C-------CcEEEEECC-CCceeEEEec-CCCCeeEEEECCCCCEEEEeC----CeEEEE
Q 007234          121 SAISFATHGSCIYSAGA---D-------GMVCEIDPL-TGSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF  184 (612)
Q Consensus       121 ~~l~~sp~~~~l~s~s~---d-------g~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~----g~i~lw  184 (612)
                      ..+.|+|+|.+|+.-..   |       +...+|.++ .+.....+.- ..++|.+++|+|+|+.+++..    +.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46778888887554322   1       234444442 2334444443 344799999999999877653    589999


Q ss_pred             EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC--CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC
Q 007234          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (612)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (612)
                      |++ ++.+..+.  ...++.+.|+|+|+++++++..  .|.+.+||.++.+.     +....+..  ...+.|+     |
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P  153 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P  153 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence            997 66666664  5678899999999999998743  46799999996653     34444433  4567787     9


Q ss_pred             CCcEEEEEec------CCcEEEEECCCcceec
Q 007234          263 AGLYVLAISE------TGVCYIWYGQNIEELR  288 (612)
Q Consensus       263 ~~~~l~t~s~------dg~i~iwd~~~~~~~~  288 (612)
                      ||++|++++.      |+.++||+.. |+.+.
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence            9999999864      7889999974 55554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=9.7e-12  Score=123.65  Aligned_cols=207  Identities=18%  Similarity=0.340  Sum_probs=146.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |++=|++|  .|+.||.+|++||.|-++.|||.-..+.++.+.                .||.. .+.+..|.|...   
T Consensus        49 H~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------TgHta-NIFsvKFvP~tn---  106 (758)
T KOG1310|consen   49 HTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------TGHTA-NIFSVKFVPYTN---  106 (758)
T ss_pred             ccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeee----------------ccccc-ceeEEeeeccCC---
Confidence            45668766  999999999999999999999998888887764                24433 344566666543   


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCC---------eEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCce
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL  151 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~  151 (612)
                          +.++++|..|..|++||+...         +........|...|-.++..|++ ..+++|+.||+|+-+|++....
T Consensus       107 ----nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  107 ----NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             ----CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence                678999999999999999851         22223345789999999999988 6799999999999999986321


Q ss_pred             -------eEE---EecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCC--------C----------eeEEEE-ecCC
Q 007234          152 -------LGK---FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD--------H----------KKMQKF-SGHP  199 (612)
Q Consensus       152 -------~~~---~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~--------~----------~~~~~~-~~h~  199 (612)
                             ...   +...--...|+.++|... +|++|+  --.++||.+.        +          .+++.| ++|-
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl  262 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL  262 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence                   111   111123567999999654 566666  3688999431        1          123323 2332


Q ss_pred             --------CC---EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          200 --------GA---VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       200 --------~~---v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                              ..   ++-+.|+|+|.-|+..- ....|+++|+..++..
T Consensus       263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  263 KNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP  308 (758)
T ss_pred             cCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence                    11   45578999998777654 4568999999887644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.1e-11  Score=123.29  Aligned_cols=196  Identities=13%  Similarity=0.218  Sum_probs=142.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCC----------CceeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT----------GSLLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~----------~~~~~  153 (612)
                      |.+|++|+.|-.+.|||+-..+.+..+..+|...|.++.|-|  +.+.+++|..|..|+++|+..          .....
T Consensus        62 G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~  141 (758)
T KOG1310|consen   62 GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR  141 (758)
T ss_pred             CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence            899999999999999999999999899899999999999998  556799999999999999974          23455


Q ss_pred             EEecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEE----------EEecCCCCEEEEEEeeCCc-EEEEEEc
Q 007234          154 KFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQ----------KFSGHPGAVRFMTFSDNGK-YVLSSAV  219 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~----------~~~~h~~~v~~l~~sp~~~-~l~s~s~  219 (612)
                      .+..|...|..|+..|++ ..+.+++  |+|+-+|++......          .+.+.--...++.++|... +|++++ 
T Consensus       142 ~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg-  220 (758)
T KOG1310|consen  142 CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG-  220 (758)
T ss_pred             hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC-
Confidence            567788899999999998 6667777  999999998642211          1111123456889999766 556665 


Q ss_pred             CCCeEEEEEcCCCccc--------c-----ceeeE--eec----------CCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234          220 GERYIALWRTDGVKKQ--------S-----ASCVL--AME----------HPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~--------~-----~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                      .|-..++||.+...+.        .     -.|+.  ...          +-....+.+.|+     |+|.-|++.-..-
T Consensus       221 sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn-----pNGtElLvs~~gE  295 (758)
T KOG1310|consen  221 SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN-----PNGTELLVSWGGE  295 (758)
T ss_pred             CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC-----CCCcEEEEeeCCe
Confidence            6899999994321110        0     00111  111          112235556676     9998877776666


Q ss_pred             cEEEEECCCccee
Q 007234          275 VCYIWYGQNIEEL  287 (612)
Q Consensus       275 ~i~iwd~~~~~~~  287 (612)
                      .|++||+..++..
T Consensus       296 hVYlfdvn~~~~~  308 (758)
T KOG1310|consen  296 HVYLFDVNEDKSP  308 (758)
T ss_pred             EEEEEeecCCCCc
Confidence            8999998877654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=5.9e-11  Score=111.91  Aligned_cols=251  Identities=14%  Similarity=0.149  Sum_probs=161.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      ++.|+.+|++||+|..+|+|.++.-....     ...+++.|.....-   -   ..-.....+..+.|.+...      
T Consensus        30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDY---L---kSleieEKinkIrw~~~~n------   97 (433)
T KOG1354|consen   30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDY---L---KSLEIEEKINKIRWLDDGN------   97 (433)
T ss_pred             eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccch---h---hhhhhhhhhhhceecCCCC------
Confidence            45999999999999999999999543222     33444444332110   0   0011123455677776643      


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCe-----------------------------------EEEEeccCCCCCeEEEEEecCC
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQ-----------------------------------LKWRLSDCHPGGVSAISFATHG  129 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~-----------------------------------~~~~~~~~h~~~V~~l~~sp~~  129 (612)
                       ...+++.+.+.+|++|.+....                                   +.+.+..+|+--|.+++++.|+
T Consensus        98 -~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   98 -LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             -ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence             6778899999999999875321                                   1122335788889999999999


Q ss_pred             CEEEEEecCCcEEEEECCCCce-e--EEEecCC-----CCeeEEEECCCCC-EEE-EeC-CeEEEEEcCCCeeEE----E
Q 007234          130 SCIYSAGADGMVCEIDPLTGSL-L--GKFRAST-----KGISCMAVSSDGK-MLA-TAA-GQLKTFNCSDHKKMQ----K  194 (612)
Q Consensus       130 ~~l~s~s~dg~v~iwd~~~~~~-~--~~~~~~~-----~~v~~l~~spdg~-~l~-~~~-g~i~lwd~~~~~~~~----~  194 (612)
                      ..++++ .|-.|.+|++.--.. .  ..++.+.     .-|++..|+|... .++ +.+ |+|++.|++...+..    .
T Consensus       177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            999988 578899999864322 2  2223222     3588899999543 333 344 999999998543211    1


Q ss_pred             E------------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-------------cee
Q 007234          195 F------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------------AVF  249 (612)
Q Consensus       195 ~------------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------------~~~  249 (612)
                      +            .+--..|..+.|+++|+|+++-.  =-+|++||+.-....    +.+..-+             ..+
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~I  329 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDAI  329 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccch
Confidence            1            11124578899999999999753  368999999654322    1111111             111


Q ss_pred             E--EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          250 M--DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       250 ~--~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .  --++++     .++.++++|+..+..++|++..|.
T Consensus       330 fdKFec~~s-----g~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  330 FDKFECSWS-----GNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hheeEEEEc-----CCcceEecccccceEEEecCCCCc
Confidence            0  112333     778899999999999999966554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.32  E-value=1.5e-10  Score=125.43  Aligned_cols=193  Identities=11%  Similarity=0.067  Sum_probs=128.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-------ce
Q 007234           86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SL  151 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-------~~  151 (612)
                      +.++++|+.||+|++||...-       +...++ ......+.++.+.+.+..++.++.||.|++.++...       .+
T Consensus      1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred             CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence            589999999999999998641       111122 124578999999999999999999999999998752       12


Q ss_pred             eEEEecCCC-C-eeEEEECC-CCC-EEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          152 LGKFRASTK-G-ISCMAVSS-DGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       152 ~~~~~~~~~-~-v~~l~~sp-dg~-~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      .+....+.. . |..-++.. ++. .++.+.  +.|..||+++.....++  ....+.|++++.+|.+.+++.|. ..|.
T Consensus      1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-s~G~ 1218 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQ 1218 (1431)
T ss_pred             eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-CCce
Confidence            222222222 2 33333433 233 444444  89999999887654433  34457899999999999999987 6899


Q ss_pred             EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcce
Q 007234          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEE  286 (612)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~  286 (612)
                      +.+||++.+...   +....++...+. -++..+.  .+.....++++  ..+.|.+|++.+|..
T Consensus      1219 l~lWDLRF~~~i---~sw~~P~~~~i~-~v~~~~~--~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPI---LSWEHPARAPIR-HVWLCPT--YPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             EEEEEeecCcee---ecccCcccCCcc-eEEeecc--CCCCceEEEecccCCCceeeeecccCcc
Confidence            999999988754   233333333222 2222211  14445555554  467899999998844

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=6.8e-09  Score=106.10  Aligned_cols=277  Identities=14%  Similarity=0.168  Sum_probs=165.1

Q ss_pred             EEEEECC----CcEEEEEc--CCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----CCcEEEEECCCC--c--eeEE
Q 007234           89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK  154 (612)
Q Consensus        89 l~~gs~~----g~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~  154 (612)
                      +++|+..    +.|.+|++  .+++....-..........++++|++++|+++..    ++.|..|++...  +  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4556655    56888887  5555432211123456678999999999999876    568988887653  3  3334


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-CeeEEE---Ee--c--------CCCCEEEEEEeeCCcEEEEE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK---FS--G--------HPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~~~~---~~--~--------h~~~v~~l~~sp~~~~l~s~  217 (612)
                      ..........++++|++++|+++.   |.|.++++.. +.....   +.  +        ......++.|+|+|++++++
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            443445667899999999999986   8999999987 433222   21  1        12457889999999999988


Q ss_pred             EcCCCeEEEEEcCCCcc-ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECC--Ccce--ecccC
Q 007234          218 AVGERYIALWRTDGVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIEE--LRNTK  291 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~--~~~~--~~~~~  291 (612)
                      ......|.+|++..... ......... ....-.+.+.|+     |+++++.+.++ ++.|.+|++.  ++..  +....
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence            76677899999987652 111111222 333445666777     99999888776 7789999887  3321  11111


Q ss_pred             Cc-----eeEeecccccCCCCcccchhhhccccc-ceecCCCceEEEEeCC-ccCceEEEeeccCCCeEEEEecCCCceE
Q 007234          292 AT-----KILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL  364 (612)
Q Consensus       292 ~~-----~~~~~~~~~~s~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~l~~S~dg~~l  364 (612)
                      ..     .........++|+++    .+.++... +.+.     ++-.+.. -.-...+.+......-..++++|||++|
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI~-----vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l  306 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSIS-----VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL  306 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEEE-----EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred             eccccccccCCceeEEEecCCC----EEEEEeccCCEEE-----EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence            00     000122223566666    44444332 1111     1111111 0112222333333347899999999999


Q ss_pred             eccccceeeecceeee
Q 007234          365 PMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       365 ~~s~s~d~~~~~w~~~  380 (612)
                      .++...++.+.++++.
T Consensus       307 ~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  307 YVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEecCCCeEEEEEEe
Confidence            7777778888888774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.4e-11  Score=121.08  Aligned_cols=275  Identities=12%  Similarity=0.091  Sum_probs=188.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECC-CCce--eEEEecCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPL-TGSL--LGKFRASTK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~-~~~~--~~~~~~~~~  160 (612)
                      +..+++|+.|-.|.+||...+.....+..+|...|..-.|-|  +.+.+++++.||.|++=.+. ++.+  ...+..|.+
T Consensus       154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g  233 (559)
T KOG1334|consen  154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG  233 (559)
T ss_pred             CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence            899999999999999999999999899999999999989988  34569999999999987654 3333  234556889


Q ss_pred             CeeEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEE---ecCCC---CEEEEEEeeCCc-EEEEEEcCCCeEEEEEcC
Q 007234          161 GISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKF---SGHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD  230 (612)
Q Consensus       161 ~v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~---~~h~~---~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~  230 (612)
                      +|..++.-|+..+ +.+++  +.+.-+|++++.+-..+   ..+..   ....++..|... .+++++ .|..+++||.+
T Consensus       234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R  312 (559)
T KOG1334|consen  234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR  312 (559)
T ss_pred             ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence            9999999997654 44444  78888899887553333   22333   456788888776 566666 69999999987


Q ss_pred             CCcccc------ceee-EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce------------ecc-c
Q 007234          231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE------------LRN-T  290 (612)
Q Consensus       231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~------------~~~-~  290 (612)
                      .-....      ..+- ........-+.++.++     .++.-+.++-.|-.|++|.-.-+.-            ++. .
T Consensus       313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY  387 (559)
T KOG1334|consen  313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY  387 (559)
T ss_pred             chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence            543221      0000 0011234456777786     6777777777788899995322211            111 1


Q ss_pred             CCc--eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccc
Q 007234          291 KAT--KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ  368 (612)
Q Consensus       291 ~~~--~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~  368 (612)
                      +++  ...+.+...|.|...    ++++|+..|.+.+|+        ......++-+.+...-|.||--.|--..| +|.
T Consensus       388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~--------K~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS  454 (559)
T KOG1334|consen  388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWD--------KKTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS  454 (559)
T ss_pred             cccccccccceeeeccCccc----eEEecCccceEEEEe--------cchhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence            222  123455556777766    899999988777766        11111122233333367777777777888 999


Q ss_pred             cceeeecceee
Q 007234          369 SLLKSKRGRYV  379 (612)
Q Consensus       369 s~d~~~~~w~~  379 (612)
                      +-|..+|+|.-
T Consensus       455 Gid~DVKIWTP  465 (559)
T KOG1334|consen  455 GIDHDVKIWTP  465 (559)
T ss_pred             CCccceeeecC
Confidence            99999999964

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.26  E-value=3e-09  Score=112.26  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=119.1

Q ss_pred             CcEEEEEECC---CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecCC--cEEEEECCCCceeEEEecCC
Q 007234           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~gs~~---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg--~v~iwd~~~~~~~~~~~~~~  159 (612)
                      ++.++.++..   ..|++||+.+++....  ..+...+.+++|+|||+.|+. .+.++  .|++||+.+++.. .+..+.
T Consensus       201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~  277 (417)
T TIGR02800       201 GQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP  277 (417)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence            6667766544   3599999998865422  235566778999999987764 44444  5899998877543 333344


Q ss_pred             CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC---eEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~---~i~vwd~~~  231 (612)
                      .......|+|||+.|+..+     ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++ .++   .|.+||+.+
T Consensus       278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG  355 (417)
T ss_pred             CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC
Confidence            4456779999999887654     2788999887764 34444556677889999999998876 454   788889877


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEE
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWY  280 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd  280 (612)
                      +...   .   +..... .....|+     |+|++|+..+.++   .+.+.+
T Consensus       356 ~~~~---~---l~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       356 GGER---V---LTDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             CCeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEE
Confidence            5422   1   111111 1223455     9999888887754   344444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=5.1e-09  Score=109.75  Aligned_cols=184  Identities=11%  Similarity=0.058  Sum_probs=115.2

Q ss_pred             EEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-----CCcEEEEECCCC---ceeEEEecCC
Q 007234           90 VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTG---SLLGKFRAST  159 (612)
Q Consensus        90 ~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~v~iwd~~~~---~~~~~~~~~~  159 (612)
                      ++...+|.  |.+.++.+++.. .+. ...+.....+|+|||+.|+..+.     |..+..|++..+   +.........
T Consensus       203 y~S~~~g~~~I~~~~l~~g~~~-~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~  280 (428)
T PRK01029        203 YVSYKLGVPKIFLGSLENPAGK-KIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF  280 (428)
T ss_pred             EEEccCCCceEEEEECCCCCce-Eee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence            34545544  888899887654 222 23455667899999998876553     223444777653   3333333222


Q ss_pred             CCeeEEEECCCCCEEEEeC---C--eEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g--~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~  231 (612)
                      ......+|+|||+.|+..+   |  .|+++++.. +.....+..+...+....|+|||+.|+..+..+  ..|.+||+.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3446789999999887654   4  456666542 233455555556677899999999988776333  3689999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec---CCcEEEEECCCcce
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE  286 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---dg~i~iwd~~~~~~  286 (612)
                      ++..      .+...........|+     |||+.|+..+.   .+.|.+||+.+++.
T Consensus       361 g~~~------~Lt~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        361 GRDY------QLTTSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCeE------EccCCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            7643      111111122334565     99998876543   34688888877654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.21  E-value=8.9e-11  Score=110.07  Aligned_cols=218  Identities=15%  Similarity=0.092  Sum_probs=153.3

Q ss_pred             EEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC
Q 007234          122 AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH  198 (612)
Q Consensus       122 ~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h  198 (612)
                      -++|||+|+++++++.- .+.+-|..+-+..+.|.. -..|..+.|..|..+++++.   +.|.+|++...+-..++...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            46799999999999754 788888877766555443 34677899999998888776   79999999999888888888


Q ss_pred             CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---c
Q 007234          199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---V  275 (612)
Q Consensus       199 ~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~  275 (612)
                      ..++.+++|||||+.++..+.-|-.|.+|.+.+.+.      .-+.++...+..++|.     |||++.+..+.-.   .
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~pK~~~kg~~f~-----~dg~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHPKTNVKGYAFH-----PDGQFCAILSRRDCKDY  159 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEecccee------EEecccccCceeEEEC-----CCCceeeeeecccHHHH
Confidence            889999999999988887776788999999998763      3456777667888887     9999988877632   2


Q ss_pred             EEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc-CceEEEeeccC-CCeE
Q 007234          276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-KPSFQKILVNS-GEDI  353 (612)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~-~~~~~~~~~h~-~~v~  353 (612)
                      +.+...+....++.++...+..+... ++|++.                     .+..-.+.+ +.+   ...|. -.+.
T Consensus       160 v~i~~c~~W~ll~~f~~dT~Dltgie-WsPdg~---------------------~laVwd~~Leykv---~aYe~~lG~k  214 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIE-WSPDGN---------------------WLAVWDNVLEYKV---YAYERGLGLK  214 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCce-ECCCCc---------------------EEEEecchhhhee---eeeeecccee
Confidence            23332333344444443333333222 455444                     222222221 111   11222 2577


Q ss_pred             EEEecCCCceEeccccceeeeccee
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                      .++|||-+++| +.|+.|+.+|+-+
T Consensus       215 ~v~wsP~~qfl-avGsyD~~lrvln  238 (447)
T KOG4497|consen  215 FVEWSPCNQFL-AVGSYDQMLRVLN  238 (447)
T ss_pred             EEEeccccceE-Eeeccchhhhhhc
Confidence            88999999999 9999999988765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.21  E-value=2.1e-11  Score=119.25  Aligned_cols=191  Identities=16%  Similarity=0.205  Sum_probs=158.6

Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      +|..+++|+.-|.|-.+|..++.....+.  -...|.++.|-.+.++++++ ....+++|| ..|..++.++.+ ..|..
T Consensus       140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~r  214 (545)
T KOG1272|consen  140 NGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVAR  214 (545)
T ss_pred             CccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhh
Confidence            38999999999999999999999877663  34679999998888777777 677899999 568778888754 56899


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      +.|-|-.-+|++++  |-++--|+.+|+.+..+....+.+..++-+|-+..+-.+. ..|+|.+|.....+..     ..
T Consensus       215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~skePL-----vK  288 (545)
T KOG1272|consen  215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPNSKEPL-----VK  288 (545)
T ss_pred             hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-CCceEEecCCCCcchH-----HH
Confidence            99999888888887  8999999999999999988889999999999888777776 6999999998887654     22


Q ss_pred             ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      +-.+...++.+++.     ++|++++|.+.|..++|||++...++.+..
T Consensus       289 iLcH~g~V~siAv~-----~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVD-----RGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             HHhcCCCcceEEEC-----CCCcEEeecccccceeEeeeccccccceee
Confidence            33444555777786     999999999999999999999887665443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=4.3e-09  Score=111.16  Aligned_cols=190  Identities=13%  Similarity=0.157  Sum_probs=120.6

Q ss_pred             EEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           10 LTSFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        10 ~~~fspdg~~las~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      +.+|||||++|+..+. ++  .|.+||+.+++.... ....+..                  ....|.+.         +
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~------------------~~~~wSPD---------G  273 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGIN------------------GAPRFSPD---------G  273 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCc------------------CCeeECCC---------C
Confidence            4599999999987754 33  588889988875332 1111111                  12345443         5


Q ss_pred             cEEE-EEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEEEecCCC
Q 007234           87 SLLV-LGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        87 ~~l~-~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~  160 (612)
                      +.|+ +.+.+|.  |+++|+.+++.. .+. .+.......+|+|||+.++..+. ++  .|+++|+.+++.... .....
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~  350 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE  350 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC
Confidence            5454 5566675  888899887754 332 35556678899999998776553 33  577778877765432 22222


Q ss_pred             CeeEEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe--EEEEEcCCC
Q 007234          161 GISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGV  232 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~  232 (612)
                      .....+|+|||++++..+   +  .|.++|+.+++.. .+.... ......|+|||+.++.++..++.  +.+++.+..
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            334578999999988765   3  6777898887643 333221 22345899999988877644443  666676433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.20  E-value=3.9e-09  Score=111.45  Aligned_cols=175  Identities=12%  Similarity=0.107  Sum_probs=120.2

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~  173 (612)
                      .|.++|...+... .+. .+...+....|+|||+.|+.++.+   ..|++||+.+++.... ..+...+.+++|+|||+.
T Consensus       171 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       171 ELQVADYDGANPQ-TIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             eEEEEcCCCCCCE-Eee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            4888887644432 343 366678999999999998877644   4799999988865433 334456677999999998


Q ss_pred             EEEe-C----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCC
Q 007234          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       174 l~~~-~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      |+.. +    ..|++||+.+++. ..+..+........|+|||++++.++..++  .|.++++.+++..      .+...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~  320 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR  320 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence            7654 3    3699999988754 344445555567799999998887663333  5777787765422      11111


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcce
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEE  286 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~  286 (612)
                      ........++     |+|++++.++.++   .|.+||+.++..
T Consensus       321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            2222334565     9999999988776   788999877543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1.2e-08  Score=108.08  Aligned_cols=181  Identities=13%  Similarity=0.100  Sum_probs=116.7

Q ss_pred             CcEEEEEECC-C--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCC--cEEEEECCCCceeEEEecCC
Q 007234           86 SSLLVLGTGG-G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~gs~~-g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg--~v~iwd~~~~~~~~~~~~~~  159 (612)
                      ++.|+..+.. +  .|.+||+.+++... + ....+.+....|+|||+.|+ +.+.+|  .|++||+.+++.. .+..+.
T Consensus       210 G~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~  286 (430)
T PRK00178        210 GKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP  286 (430)
T ss_pred             CCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence            6666655433 3  49999999887642 2 22334556789999999876 444555  5888899887654 344445


Q ss_pred             CCeeEEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCC
Q 007234          160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~  232 (612)
                      .......|+|||+.++..+   |  .|+++|+.+++..+ +...........|+|+|++++..+..++  .|.+||+.++
T Consensus       287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            5567789999999887655   2  68888988876433 3222223345789999999988764343  5788898877


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-C--cEEEEECC
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ  282 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-g--~i~iwd~~  282 (612)
                      +..   . ..  ..... ....|+     |||++++..+.+ |  .|.+++..
T Consensus       366 ~~~---~-lt--~~~~~-~~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        366 SVR---I-LT--DTSLD-ESPSVA-----PNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CEE---E-cc--CCCCC-CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence            533   1 11  11111 123455     999998887654 3  46666654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=5.8e-09  Score=110.39  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=118.5

Q ss_pred             EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234           98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l  174 (612)
                      |.++|...+... .+ ..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+......|+|||+.|
T Consensus       181 l~~~d~~g~~~~-~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        181 LQRSDYDGARAV-TL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEECCCCCCce-EE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            777887765543 33 2466789999999999998776643   369999998886543 33333445678999999988


Q ss_pred             EEe-C--C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCc
Q 007234          175 ATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPA  247 (612)
Q Consensus       175 ~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~  247 (612)
                      +.. +  |  .|++||+.+++. ..+..+........|+|||+.++..+..++  .|.++++.+++..   . .....  
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~-lt~~~--  330 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---R-VTFVG--  330 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---E-eecCC--
Confidence            743 3  3  799999998764 345556666677899999998877764444  5777777766532   1 11111  


Q ss_pred             eeEEeEEecCCccCCCCcEEEEEecC-C--cEEEEECCCcce
Q 007234          248 VFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE  286 (612)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~t~s~d-g--~i~iwd~~~~~~  286 (612)
                      .......++     |||++++..+.+ |  .|.+||+.+++.
T Consensus       331 ~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        331 NYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            112234455     999998887653 3  588899888754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=6.3e-10  Score=119.29  Aligned_cols=191  Identities=12%  Similarity=0.164  Sum_probs=146.1

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        13 fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g   92 (612)
                      +.-+...++.+..++.+.+||...+........                .....-++++.|.... +      .-++++|
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~----------------~er~~l~~~~~~g~s~-~------~~~i~~g  151 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS----------------DERCTLYSSLIIGDSA-E------ELYIASG  151 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCC----------------CceEEEEeEEEEeccC-c------EEEEEec
Confidence            344556788888889999999987776655431                1111122233332211 1      4578999


Q ss_pred             ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCeeEEEECCCC
Q 007234           93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDG  171 (612)
Q Consensus        93 s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~spdg  171 (612)
                      +..|.|.+|++....... ...+|.+.|.++.|+-||.+++++|.|.++++|++.+.+... +.-+|...+..++|.|. 
T Consensus       152 sv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-  229 (967)
T KOG0974|consen  152 SVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-  229 (967)
T ss_pred             cccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence            999999999998444433 347899999999999999999999999999999999988776 55678999999999998 


Q ss_pred             CEEEEeC--CeEEEEEcCCCeeEEEEecCCC-CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                       .+++++  -+.++|+.. ++.+..+.+|.. .+..++..++....++++ .|+.+++|++..
T Consensus       230 -~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 -RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNG  289 (967)
T ss_pred             -eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhc
Confidence             777777  799999764 445557778864 588899988888888887 799999999754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=5.5e-08  Score=93.51  Aligned_cols=244  Identities=15%  Similarity=0.202  Sum_probs=154.0

Q ss_pred             EEEcCCCCEEEEEeC---CCcEEEEECCC--CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           11 TSFSPALDYFAICSG---DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        11 ~~fspdg~~las~s~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      ++|+|++++|.++-.   +|.|..|.++.  |++...-..                 .......|-  .+.+++      
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-----------------~~~g~~p~y--vsvd~~------   99 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-----------------TLPGSPPCY--VSVDED------   99 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-----------------ccCCCCCeE--EEECCC------
Confidence            399999998888754   47777776654  554321110                 001111111  122222      


Q ss_pred             CcEEEEEEC-CCcEEEEEcCC-CeEEE--EeccCCCCC----------eEEEEEecCCCEEEEEec-CCcEEEEECCCCc
Q 007234           86 SSLLVLGTG-GGDVLALAVSA-GQLKW--RLSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~-~g~I~vwd~~~-~~~~~--~~~~~h~~~----------V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~  150 (612)
                      +++++++.- .|.|.++-++. |....  .. ..|.+.          +....|.|++++|++++. -..|.+|++..|+
T Consensus       100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706         100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             CCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence            777777765 46799999966 33211  11 135544          888999999999999863 2468999998776


Q ss_pred             eeEEE---ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCC-eeEEEEec---------CCCCEEEEEEeeCCcEE
Q 007234          151 LLGKF---RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       151 ~~~~~---~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~-~~~~~~~~---------h~~~v~~l~~sp~~~~l  214 (612)
                      ....-   -....+...|.|+|++++..+..   ++|-+|..... ..+..++.         -......|..+|||++|
T Consensus       179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL  258 (346)
T COG2706         179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL  258 (346)
T ss_pred             cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence            53321   12345779999999999999887   89999998773 22333322         12456788999999999


Q ss_pred             EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-cEEEEEC--CCcce
Q 007234          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG--QNIEE  286 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-~i~iwd~--~~~~~  286 (612)
                      +++-.....|.+|.+...... ...+..........+...+.     ++|++|+++.+++ .|.+|..  ++|+.
T Consensus       259 YasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         259 YASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             EEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence            987655567888887654321 01122222333334455565     8999999998854 7888864  34443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=5.7e-08  Score=93.37  Aligned_cols=275  Identities=14%  Similarity=0.118  Sum_probs=168.5

Q ss_pred             EEEEECC----CcEEEEEcCCC--eEEEEeccCCCCCeEEEEEecCCCEEEEEecC---CcEEEEECCC--CceeE--EE
Q 007234           89 LVLGTGG----GDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLT--GSLLG--KF  155 (612)
Q Consensus        89 l~~gs~~----g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~v~iwd~~~--~~~~~--~~  155 (612)
                      +++|+..    .-|++|++.+.  +......-.+.+.++-++|+|+++.|+++..+   |.|..|.+..  |+...  ..
T Consensus         5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~   84 (346)
T COG2706           5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ   84 (346)
T ss_pred             EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence            4555543    44999998743  32211223567889999999999999998654   6677666553  54422  22


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-Cee---EEEEecCCCC----------EEEEEEeeCCcEEEEEE
Q 007234          156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK---MQKFSGHPGA----------VRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~---~~~~~~h~~~----------v~~l~~sp~~~~l~s~s  218 (612)
                      .....+...++++++|++++++.   |.|.++-++. |.+   +..+ .|.+.          +....|.|++++++++.
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence            22334558999999999999998   8999999865 432   2222 35444          78889999999999987


Q ss_pred             cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCc-c---eecccCCc
Q 007234          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI-E---ELRNTKAT  293 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~-~---~~~~~~~~  293 (612)
                      .+-..|.+|++..++........ + .+..-.+-+.|.     |++++....++ +++|-+|..... .   .++.+...
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~-v-~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAE-V-KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             cCCceEEEEEcccCccccccccc-c-CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            66668999999977654322211 2 334444566676     99999999887 999999997763 1   22211111


Q ss_pred             -----eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc---CceEEEeeccCCCeEEEEecCCCceEe
Q 007234          294 -----KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL---KPSFQKILVNSGEDINLNCSQDGVLLP  365 (612)
Q Consensus       294 -----~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~---~~~~~~~~~h~~~v~~l~~S~dg~~l~  365 (612)
                           .....+....+++++    .+.++..-     .| .+.+..=...   -...+....+...-....++++|++|+
T Consensus       237 P~dF~g~~~~aaIhis~dGr----FLYasNRg-----~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         237 PEDFTGTNWAAAIHISPDGR----FLYASNRG-----HD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             ccccCCCCceeEEEECCCCC----EEEEecCC-----CC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence                 111122222344444    33333221     01 1111100001   111222222443467788999999997


Q ss_pred             ccccceeeecceeeec
Q 007234          366 MSQSLLKSKRGRYVQN  381 (612)
Q Consensus       366 ~s~s~d~~~~~w~~~~  381 (612)
                      +++-.+.++.+..+.+
T Consensus       307 aa~q~sd~i~vf~~d~  322 (346)
T COG2706         307 AANQKSDNITVFERDK  322 (346)
T ss_pred             EEccCCCcEEEEEEcC
Confidence            7777777788887744

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.3e-08  Score=107.46  Aligned_cols=181  Identities=15%  Similarity=0.093  Sum_probs=113.0

Q ss_pred             CcEEEEEEC-CC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecCCc--EEEEECCCCceeEEEecCC
Q 007234           86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~gs~-~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg~--v~iwd~~~~~~~~~~~~~~  159 (612)
                      ++.|+..+. +|  .|++||+.+++... +. ...+......|+|||+.|+. .+.+|.  |+++|+.+++.. .+..+.
T Consensus       229 G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~  305 (448)
T PRK04792        229 GRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR  305 (448)
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence            666665543 33  48999998887532 21 12234457899999998764 455664  888898877653 344444


Q ss_pred             CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCC
Q 007234          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~  232 (612)
                      ......+|+|||+.++..+     ..|+++|+.+++..+ +..+........|+|||++++..+..++  .|.++|+.++
T Consensus       306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            5567889999999887655     368888888776533 3222223345789999999888764444  4555677666


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CC--cEEEEECC
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQ  282 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg--~i~iwd~~  282 (612)
                      ...   . .......   ....|+     |||++|+..+. +|  .+++++.+
T Consensus       385 ~~~---~-lt~~~~d---~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        385 AMQ---V-LTSTRLD---ESPSVA-----PNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CeE---E-ccCCCCC---CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence            532   1 1111111   112355     99998877665 33  36667763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=7e-09  Score=108.74  Aligned_cols=197  Identities=16%  Similarity=0.153  Sum_probs=120.4

Q ss_pred             eEEEEcCCCCE--EE-EEeCCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            9 ILTSFSPALDY--FA-ICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         9 l~~~fspdg~~--la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      +..+|||||+.  ++ +...+|  .|.+.++.+|+.... ....+......|+++                         
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPD-------------------------  241 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPR-------------------------  241 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCC-------------------------
Confidence            45599999975  32 333343  577779887764432 222222222333333                         


Q ss_pred             cCCcEEEEEE-CCC--cEE--EEEcCCC--eEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEE--ECCC-Ccee
Q 007234           84 LGSSLLVLGT-GGG--DVL--ALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL  152 (612)
Q Consensus        84 ~~~~~l~~gs-~~g--~I~--vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iw--d~~~-~~~~  152 (612)
                        ++.|+..+ .+|  .+.  +|++..+  .....+...+.......+|+|||+.|+..+ .+|...+|  ++.. +...
T Consensus       242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence              55565544 334  343  4676653  122233333334456789999999877665 46655555  4432 2334


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC--CCeEE
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA  225 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~--d~~i~  225 (612)
                      ..+......+....|+|||+.|+...     ..|++||+.+++.. .+......+....|+|||+.|+..+..  ...|.
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            44544445677899999999988664     37999999988754 344334456788999999988765432  34688


Q ss_pred             EEEcCCCcc
Q 007234          226 LWRTDGVKK  234 (612)
Q Consensus       226 vwd~~~~~~  234 (612)
                      +|++.+++.
T Consensus       399 ~vdl~~g~~  407 (428)
T PRK01029        399 LISLITKKT  407 (428)
T ss_pred             EEECCCCCE
Confidence            888877653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.15  E-value=1.1e-09  Score=101.42  Aligned_cols=198  Identities=14%  Similarity=0.156  Sum_probs=144.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus         8 ~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      .+++.|++.|..++++..+|.+.+-+........  +++.|........|+..                          +
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~  177 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E  177 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence            5688999999999999999999865555444433  66666554444333322                          1


Q ss_pred             CcEEEEEECCCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC-CCceeEEEecCCCCe
Q 007234           86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~v  162 (612)
                      .+++.+|+.||.+.-||++ .++.+++-.+.|...|.++.-+| .+.++++|+.|..|++||.+ -++++..-. ..++|
T Consensus       178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV  256 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV  256 (339)
T ss_pred             CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence            6789999999999999999 56677776677999999998887 56789999999999999998 566665533 34789


Q ss_pred             eEEEECCCCC--EEEEeC-CeEEEEEcCCC--e---eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE-EEEcCCC
Q 007234          163 SCMAVSSDGK--MLATAA-GQLKTFNCSDH--K---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV  232 (612)
Q Consensus       163 ~~l~~spdg~--~l~~~~-g~i~lwd~~~~--~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~-vwd~~~~  232 (612)
                      +.+.++|.-.  +|+++- +-.+|.+.+.+  +   .....+.|.+-+..-.|.....++++|+..|+.++ +|-.-++
T Consensus       257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            9999999543  333333 55666666543  2   34455677777777777555567899888898855 8865554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=5.8e-09  Score=104.93  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      ++++.+++...+...+. ..++|.++.|+|+|+.+++..    ..+.+||++ +.++..+  ..++-+++-|+|.|++++
T Consensus       252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEE
Confidence            46666665222322232 367999999999999888776    589999985 4455555  467778999999999999


Q ss_pred             EEEcC--CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec------CCcEEEEECCCc
Q 007234          216 SSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNI  284 (612)
Q Consensus       216 s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~------dg~i~iwd~~~~  284 (612)
                      .+|.+  .|.+-+||+.+.+++     ..+...  ..+...|+     |||.+++|++.      |+.++||+....
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a~--~tt~~eW~-----PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKAA--NTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EeecCCCCCceEEEeccchhhc-----cccccC--CceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            98854  368999999986544     232222  23445676     99999999975      788999996433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=2.4e-10  Score=117.62  Aligned_cols=202  Identities=12%  Similarity=0.161  Sum_probs=142.3

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +++..+  ..+|.|+-+|.++.-|.+ +-|+..- ....-+ .|..                ........|.+...    
T Consensus        25 ~~~~a~--si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l-~h~t----------------pw~vad~qws~h~a----   80 (1081)
T KOG0309|consen   25 GGFNAV--SINPSGRDIVLASRQGLY-IIDLDDPFTPPRWL-HHIT----------------PWQVADVQWSPHPA----   80 (1081)
T ss_pred             Ccccce--eeccccchhhhhhhcCeE-EEeccCCCCCceee-eccC----------------cchhcceecccCCC----
Confidence            345444  899999999999887754 4465432 221111 1110                22344556665543    


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCC--CeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc-eeEEEecC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKFRAS  158 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~-~~~~~~~~  158 (612)
                         ..+-++.+.+.+-.+|++..  .+.+.-++.+|+..|+++.|+|... .+++|+.|-.|..||+++.. ++..+..-
T Consensus        81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w  157 (1081)
T KOG0309|consen   81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW  157 (1081)
T ss_pred             ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence               35567777777888998753  3344445578999999999998654 58999999999999998764 55556555


Q ss_pred             CCCeeEEEECC-CCCEEEEeC-CeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCc
Q 007234          159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       159 ~~~v~~l~~sp-dg~~l~~~~-g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ......++|+. ++..+|+.. ..|++||.+.| .++..+++|...|+.+.|..-- ..+.+++ .|++|+.||..+..
T Consensus       158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKST  235 (1081)
T ss_pred             cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeecccccc
Confidence            66778899986 556666655 68999999876 5688889999999999987532 3456665 79999999987654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=8.9e-08  Score=95.71  Aligned_cols=266  Identities=14%  Similarity=0.067  Sum_probs=150.2

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----------CCcEEEEECCCCceeEEEecCCC-----
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK-----  160 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~-----  160 (612)
                      |.|.+.|..+++.+..+..+....  .+ ++|||+.++.|..          +..|.+||..+.+.+..+.....     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            889999999999998886554333  34 9999999888765          78999999999999988875322     


Q ss_pred             --CeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       161 --~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                        ....++++|||++|++..    +.|.+.|+.+++.+.++.-.. ...-.. .++..+++.|  .||......+.+...
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~--~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHC--RDGSLAKVGYGTKGN  179 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEe--ecCceEEEEecCCCc
Confidence              234789999999999776    699999999999998887422 111122 2222333333  255544444433221


Q ss_pred             ccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce-----ecccCCcee--Ee--e--cccc
Q 007234          235 QSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE-----LRNTKATKI--LS--S--SEDV  302 (612)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~-----~~~~~~~~~--~~--~--~~~~  302 (612)
                      ........+... .....--.+.    ..+|+++++..+ |.|.+.|+.....     .........  .+  .  ....
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia  254 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA  254 (352)
T ss_pred             eEEeeeeeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence            100000111000 0000000112    137888877777 9999999544322     111110000  00  0  0012


Q ss_pred             cCCCCcccchhhhc-c--cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-eEeccccceeeeccee
Q 007234          303 NSKSQKSATAAIFA-A--KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRY  378 (612)
Q Consensus       303 ~s~~~~~~~~~i~~-~--~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~-~l~~s~s~d~~~~~w~  378 (612)
                      +.++++    .+.. .  ...+.-.....++++.+.... .....+.. ...++.+++||||+ +|.++...++.+.+-+
T Consensus       255 ~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       255 YHRARD----RIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EcCCCC----EEEEEecCCccccccCCCCEEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            344544    2222 1  111112222345666664333 33333333 23789999999999 7744554566666666


Q ss_pred             e
Q 007234          379 V  379 (612)
Q Consensus       379 ~  379 (612)
                      .
T Consensus       329 ~  329 (352)
T TIGR02658       329 A  329 (352)
T ss_pred             C
Confidence            5

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=1.4e-09  Score=109.19  Aligned_cols=190  Identities=14%  Similarity=0.153  Sum_probs=141.6

Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        12 ~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      +|+. ...++..| ....|.=+|++.|+.+.-|....+.++.+..+.-                           ..+|+
T Consensus       140 ~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla  191 (703)
T KOG2321|consen  140 KYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLA  191 (703)
T ss_pred             cccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCc---------------------------cceEE
Confidence            5544 34444444 3446777799999998888755554444333333                           77899


Q ss_pred             EEECCCcEEEEEcCCCeEEEEec-----cCCCC-----CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-cCC
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-AST  159 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~-----~~h~~-----~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~  159 (612)
                      +|+.+|.|..||+++......+.     ..|.+     .|+++.|+.+|-.+++|..+|.|.+||+++.+++..-. +..
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e  271 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE  271 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence            99999999999999876554442     22333     39999999999999999999999999999988766533 223


Q ss_pred             CCeeEEEECCC--CCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 KGISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spd--g~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      -+|..+.|.+.  +..+++.. ..++|||-.+|+....+.. ...++.+++-|++-.++++- .+..+..|=+..
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~  344 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPS  344 (703)
T ss_pred             cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEec-CCCcceeEEccc
Confidence            48999999775  67788888 8999999999999888763 45599999999988888875 566666665544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=1.3e-08  Score=96.52  Aligned_cols=232  Identities=19%  Similarity=0.287  Sum_probs=154.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEE-ECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           13 FSPALDYFAICSGDARIKIW-DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        13 fspdg~~las~s~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      .-|-.+-+.+.+.|.++||| +.+.++.-..+.                 -.....++++...+.         ...|++
T Consensus        32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------~~mP~~~~~~~y~~e---------~~~L~v   85 (404)
T KOG1409|consen   32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------HYMPSPCSAMEYVSE---------SRRLYV   85 (404)
T ss_pred             eccCCCCeEEccccceeeeEEeccccccCchhh-----------------hhCCCCceEeeeecc---------ceEEEE
Confidence            34445567889999999999 455555443332                 111234455554443         567999


Q ss_pred             EECCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE
Q 007234           92 GTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (612)
                      |-.+|++.-+.+...-    .. +....|...|..+-|+-....+++++.|..+...-.+.+..+..+.- ....+++.+
T Consensus        86 g~~ngtvtefs~sedfnkm~~~-r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~  163 (404)
T KOG1409|consen   86 GQDNGTVTEFALSEDFNKMTFL-KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQF  163 (404)
T ss_pred             EEecceEEEEEhhhhhhhcchh-hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCce
Confidence            9999999888775432    22 22357999999999998888999999999887666666655443221 111222222


Q ss_pred             CCCCCEEEEeC--CeEEEE--EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234          168 SSDGKMLATAA--GQLKTF--NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lw--d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (612)
                      .-.  +...|.  |.|.+.  ....-.++.++.+|.+.+.++.|.|....++++. .|..+.+||+...+..   .....
T Consensus       164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~---~~el~  237 (404)
T KOG1409|consen  164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT---AYELQ  237 (404)
T ss_pred             eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce---eeeec
Confidence            212  445555  544443  3345567889999999999999999999999987 6999999999876644   22222


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      .|.. -+..++..     +--+.+++++.||.|.+|+.+..
T Consensus       238 gh~~-kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  238 GHND-KVQALSYA-----QHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             cchh-hhhhhhhh-----hhheeeeeccCCCeEEEEeccce
Confidence            2333 23333333     45578999999999999997544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.11  E-value=7.5e-08  Score=100.10  Aligned_cols=224  Identities=16%  Similarity=0.142  Sum_probs=142.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      ++..+.+++.+|.|..+|..+|+.+..+........               ..  .    .+        +..+++++.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---------------~p--~----v~--------~~~v~v~~~~  114 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---------------GV--G----AD--------GGLVFVGTEK  114 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---------------ce--E----Ec--------CCEEEEEcCC
Confidence            466788888899999999999998877653221000               00  0    00        5678899999


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe-----eEEEECCC
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD  170 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~spd  170 (612)
                      |.+..+|..+|+.+++....  ..+.+.-.. .+..++.++.++.++.||.++|+.+-.+......+     .+.... +
T Consensus       115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~  190 (377)
T TIGR03300       115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D  190 (377)
T ss_pred             CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence            99999999999998876422  223221111 34567778889999999999999877765433211     111222 3


Q ss_pred             CCEEEEeC--CeEEEEEcCCCeeEEEEecCCC----C------E-EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG----A------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       171 g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~----~------v-~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      + .++.+.  |.+..+|.++|+.+.+......    .      + ....+  .+..++.++ .++.+..||..+++..  
T Consensus       191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~--  264 (377)
T TIGR03300       191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL--  264 (377)
T ss_pred             C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence            4 455554  8999999999987654321100    0      0 01112  234566665 6899999999988643  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                         ........  ....       .++..+++++.+|.++.+|..+++.+...
T Consensus       265 ---W~~~~~~~--~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       265 ---WKRDASSY--QGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             ---EeeccCCc--cCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence               22221110  1111       23567888889999999999999877544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=9.3e-08  Score=110.40  Aligned_cols=250  Identities=10%  Similarity=0.060  Sum_probs=149.8

Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        11 ~~fspd-g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ++++++ |+++++-+..++|++||.. |..+..+.+.. .....-.+.    ...+ .....+++.+.         ++.
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~----~a~f-~~P~GIavd~~---------gn~  637 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFE----DATF-NRPQGLAYNAK---------KNL  637 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchh----cccc-CCCcEEEEeCC---------CCE
Confidence            388875 5566666778899999985 55554443211 000000000    0000 01233444332         455


Q ss_pred             EEEEEC-CCcEEEEEcCCCeEEEEecc-CC---------------CCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCc
Q 007234           89 LVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS  150 (612)
Q Consensus        89 l~~gs~-~g~I~vwd~~~~~~~~~~~~-~h---------------~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~  150 (612)
                      |+++.. ++.|+++|+.++... .+.. +.               -..-++++|+| ++..+++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            555554 456999998877643 2211 00               12346899999 55556666778999999987765


Q ss_pred             eeEEEecC---------------CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec-------------C-
Q 007234          151 LLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-------------H-  198 (612)
Q Consensus       151 ~~~~~~~~---------------~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~-------------h-  198 (612)
                      .. .+.+.               -.....|+++|+|+.|+++.   +.|++||+.++.......+             + 
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            42 22211               12456799999998766665   7999999987653211100             0 


Q ss_pred             -------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-----------CCceeEEeEEecCCcc
Q 007234          199 -------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGV  260 (612)
Q Consensus       199 -------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  260 (612)
                             -....+++++++|..+++-. .++.|++||..++....   +....           ..-.....++++    
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~t---iaG~G~~G~~dG~~~~a~l~~P~GIavd----  867 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVTT---LAGTGKAGFKDGKALKAQLSEPAGLALG----  867 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEEE---EeccCCcCCCCCcccccccCCceEEEEe----
Confidence                   01235789999998666654 78999999998765321   11000           001123445665    


Q ss_pred             CCCCcEEEEEecCCcEEEEECCCcce
Q 007234          261 DDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       261 ~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                       ++|+.+++-+.++.|++||+.+++.
T Consensus       868 -~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        868 -ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -CCCCEEEEECCCCEEEEEECCCCcc
Confidence             8999888888899999999988764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.10  E-value=2.9e-08  Score=98.83  Aligned_cols=305  Identities=13%  Similarity=0.133  Sum_probs=182.8

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCcEEEEeeccCCcccccccccccccccccccee
Q 007234            5 NIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT   69 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~   69 (612)
                      .|+.+  .|||.+.||.+=+..+               .+.|||+.+|..+..|.....+-               ..-.
T Consensus        73 ~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---------------~~Wp  135 (561)
T COG5354          73 DVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---------------LGWP  135 (561)
T ss_pred             Cceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---------------cccc
Confidence            56667  9999999999855433               49999999999998887544320               0111


Q ss_pred             EEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCE--EEE-----EecCCcE
Q 007234           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSC--IYS-----AGADGMV  141 (612)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~--l~s-----~s~dg~v  141 (612)
                      .+.|.-.+         .+++=- ....++|+++ ++..- .-+..-....|....|+|.++.  |+.     .+.++++
T Consensus       136 ~~k~s~~D---------~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~  204 (561)
T COG5354         136 VLKFSIDD---------KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMV  204 (561)
T ss_pred             eeeeeecc---------hhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence            22333322         222222 4456899997 33321 1111112367889999996433  443     3578899


Q ss_pred             EEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe
Q 007234          142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (612)
Q Consensus       142 ~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s  208 (612)
                      ++|.+..+..+.+-.-..-.=..+.|.+.|+++++--             ..+++++++...+ ....+..++|...+|.
T Consensus       205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~  283 (561)
T COG5354         205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWE  283 (561)
T ss_pred             EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeec
Confidence            9999987766655332222235688999998876521             3788888874433 2222668999999999


Q ss_pred             eCCcEEEEEE-cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCCc
Q 007234          209 DNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNI  284 (612)
Q Consensus       209 p~~~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~  284 (612)
                      |.++.+++++ ..+-.+.++|++..-      .+.  .+...-....|+     |.+++++.++.|   |.+.+||....
T Consensus       284 p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~--~Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         284 PLSSRFAVISGYMPASVSVFDLRGNL------RFY--FPEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccCCceeEEecccccceeecccccce------EEe--cCCccccccccc-----CcccEEEEecCCccccceEEeccCCc
Confidence            9998777665 567789999988762      222  233333445576     899999987765   68999997655


Q ss_pred             ceec-ccCCceeEeecccccCCCCcccchhhhcccccceecCCCc--eEEEEeCCccCceEEEeeccCCCeEEEEecCCC
Q 007234          285 EELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASV--HTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG  361 (612)
Q Consensus       285 ~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg  361 (612)
                      -.+. .......+.+   .++|++.    .+.++...-..+. |.  .++-.+|...+           +.+.+.|.|.|
T Consensus       351 f~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~-Dn~i~l~~v~g~~~f-----------el~~~~W~p~~  411 (561)
T COG5354         351 FKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRV-DNSIKLWDVYGAKVF-----------ELTNITWDPSG  411 (561)
T ss_pred             eEEEEEeecCCceEe---eccCCce----EEEecCCCccccc-CcceEEEEecCchhh-----------hhhhccccCCc
Confidence            4332 3333332222   3677766    3333332211122 22  22222332222           56677788888


Q ss_pred             ceEeccccce
Q 007234          362 VLLPMSQSLL  371 (612)
Q Consensus       362 ~~l~~s~s~d  371 (612)
                      ++. .+.|.+
T Consensus       412 ~~~-ttsSs~  420 (561)
T COG5354         412 QYV-TTSSSC  420 (561)
T ss_pred             ccc-eeeccC
Confidence            887 444433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.08  E-value=3e-09  Score=114.20  Aligned_cols=183  Identities=13%  Similarity=0.150  Sum_probs=143.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCe-----EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V-----~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                      ...+++++.+..+.+||...+.....+.  +...+     .-+-++++.-++++|+.-+.|.+|+.........+.+|++
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            6789999999999999999888776553  33322     2233456666799999999999999874433346889999


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      .+.++.++-||+++++.+  .++++|++.+.+... ..-+|+..|..+.|.|+  .+++++ .|.+.++|+.+.....  
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~--  251 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE--  251 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh--
Confidence            999999999999999998  899999999988765 66799999999999998  788887 8999999976655432  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                        ++ ..|...-+..+...     ++...++|++.||.+++|++..
T Consensus       252 --~y-~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  252 --VY-DEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             --hh-hhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhc
Confidence              11 23444444445554     6778899999999999999643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=1.7e-07  Score=93.50  Aligned_cols=331  Identities=11%  Similarity=0.045  Sum_probs=187.1

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      |++..  +|||.|.+|++.... .|.+|+...+..+..+.  ...+....|++.        ..-...|......   .+
T Consensus        34 p~~~~--~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~--------~kYL~tw~~~pi~---~p   97 (561)
T COG5354          34 PVAYV--SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPN--------EKYLVTWSREPII---EP   97 (561)
T ss_pred             chhhe--eecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcc--------cceeeeeccCCcc---Ch
Confidence            45444  999999999987765 48999988777665554  223444444443        1111222211100   00


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC--eE-EEEEecCCCEEEEEecCCcEEEEECCCCce-eEEEecC-C
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFRAS-T  159 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~-~  159 (612)
                       ..-+.=-+.+..+.+||+.+|..+..+.. -..+  .+ -+.|+.+.++++=- ....++++++ ++.. ...+..- .
T Consensus        98 -e~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~  173 (561)
T COG5354          98 -EIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP  173 (561)
T ss_pred             -hhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence             00011112223699999999999877743 3333  44 67888887765433 2345889987 3321 1112222 2


Q ss_pred             CCeeEEEECCCCC--EEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc----------C
Q 007234          160 KGISCMAVSSDGK--MLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------G  220 (612)
Q Consensus       160 ~~v~~l~~spdg~--~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~----------~  220 (612)
                      ..+....|+|.|+  .|+.=.       +.+++|.+..+..+.+-.-....=..+.|.+.|++++.-..          +
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            5788888998643  344322       68999998877665443222222345788888887664321          1


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEee
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSS  298 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (612)
                      ...++++++......    +. . .....+.-.+|.     |.++.+++.+  .+-.+.++|++..-.....+..+..  
T Consensus       254 esnLyl~~~~e~~i~----V~-~-~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT--  320 (561)
T COG5354         254 ESNLYLLRITERSIP----VE-K-DLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNT--  320 (561)
T ss_pred             cceEEEEeecccccc----ee-c-cccccceeeeec-----ccCCceeEEecccccceeecccccceEEecCCccccc--
Confidence            235677777644322    11 1 223445556676     8888777766  5778899998766222222222222  


Q ss_pred             cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccc------ccee
Q 007234          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ------SLLK  372 (612)
Q Consensus       299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~------s~d~  372 (612)
                        ..|+|..+    +|+.++++..    .|.+.+.+....+.+...+.+-  ...-+.|||||.|+ .+.      -.|.
T Consensus       321 --~~fsp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~Dn  387 (561)
T COG5354         321 --IFFSPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVDN  387 (561)
T ss_pred             --ccccCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccCc
Confidence              23788877    8888887752    2333333322223222222222  23456699999987 443      2588


Q ss_pred             eecceeeec
Q 007234          373 SKRGRYVQN  381 (612)
Q Consensus       373 ~~~~w~~~~  381 (612)
                      ++++|++..
T Consensus       388 ~i~l~~v~g  396 (561)
T COG5354         388 SIKLWDVYG  396 (561)
T ss_pred             ceEEEEecC
Confidence            999999854

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.07  E-value=1.9e-07  Score=93.37  Aligned_cols=244  Identities=14%  Similarity=0.142  Sum_probs=142.3

Q ss_pred             EEcCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234           12 SFSPALDYFAICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus        12 ~fspdg~~las~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+||||+.|+.+..          ++.|.|||..+++.+.++.....+...           .......+. .+++    
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-----------~~~~~~~~~-ls~d----  115 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-----------VGTYPWMTS-LTPD----  115 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-----------ccCccceEE-ECCC----
Confidence            39999998876654          789999999999999888632211000           000000111 1111    


Q ss_pred             cccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-Cce-eEE---
Q 007234           82 RKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSL-LGK---  154 (612)
Q Consensus        82 ~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~-~~~---  154 (612)
                          ++++++...  +..|.+.|+.+++.+.++..+  +...-...+++ ..+ +-+.||......+.+ |+. ...   
T Consensus       116 ----gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t~e~-~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~v  187 (352)
T TIGR02658       116 ----NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPTAND-TFF-MHCRDGSLAKVGYGTKGNPKIKPTEV  187 (352)
T ss_pred             ----CCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEecCC-ccE-EEeecCceEEEEecCCCceEEeeeee
Confidence                777887774  566999999999998777431  21111222222 212 223455444433221 221 111   


Q ss_pred             EecCCCCe-eEEEECC-CCCEEEEeC-CeEEEEEcCCC-----eeEEEEec-------CCCCEEEEEEeeCCcEEEEEEc
Q 007234          155 FRASTKGI-SCMAVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFSG-------HPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       155 ~~~~~~~v-~~l~~sp-dg~~l~~~~-g~i~lwd~~~~-----~~~~~~~~-------h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      |.....++ ..-.|.+ +|+++.+.. |+|++.|+...     +....+..       ..+.+.-++++|+++.++....
T Consensus       188 f~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       188 FHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             ecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence            11101000 0013455 898888877 99999996443     33333221       2334455999999998887431


Q ss_pred             ---------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEECCCcceec
Q 007234          220 ---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIEELR  288 (612)
Q Consensus       220 ---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd~~~~~~~~  288 (612)
                               ..+.|.++|..+.+..     ..+.-. .....+.++     +|++ +|++.+ .++.|.++|..+++.++
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi-----~~i~vG-~~~~~iavS-----~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRL-----RKIELG-HEIDSINVS-----QDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEE-----EEEeCC-CceeeEEEC-----CCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence                     1257999999888744     222222 233445676     9999 888776 57899999999999887


Q ss_pred             cc
Q 007234          289 NT  290 (612)
Q Consensus       289 ~~  290 (612)
                      ..
T Consensus       337 ~i  338 (352)
T TIGR02658       337 SV  338 (352)
T ss_pred             ee
Confidence            65

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.05  E-value=1.1e-09  Score=122.73  Aligned_cols=182  Identities=21%  Similarity=0.344  Sum_probs=139.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ++.=+|...+.++|+.||.|++|.+..++.+..++..+ ..+....|+..                           |+.
T Consensus      2213 r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---------------------------Gnk 2265 (2439)
T KOG1064|consen 2213 RMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---------------------------GNK 2265 (2439)
T ss_pred             eecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---------------------------CCc
Confidence            34667778899999999999999999998887775332 33444445544                           778


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe---cCCcEEEEECCCC---ceeEEEecCCCCe
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTG---SLLGKFRASTKGI  162 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s---~dg~v~iwd~~~~---~~~~~~~~~~~~v  162 (612)
                      +.++..||.+.+|.+. .+.. .-.+.|.....++.|-.  ..+++++   .++.+.+||..-.   ..+.  ..|.+++
T Consensus      2266 ~~i~d~dg~l~l~q~~-pk~~-~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS-PKPY-TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred             eeeeccCCceeecccC-Ccce-eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCc
Confidence            8999999999999987 3332 22357999999999975  5677765   5788999996432   2333  7789999


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +++++.|..+++++|+  |.|++||++..+.+..++.         +. ...++++++ ..|.++||++......
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccchh
Confidence            9999999999999999  9999999998877666553         33 455778776 6899999999887543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=1.8e-07  Score=92.26  Aligned_cols=173  Identities=17%  Similarity=0.136  Sum_probs=127.3

Q ss_pred             EcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        13 fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      |++ +|+++|..|. |...|.+.-.+-.++.-  +.+.+.-..+..+                           ++-++.
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~VrY~r~~~~---------------------------~e~~vi  376 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGVRYRRIQVD---------------------------PEGDVI  376 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCceEEEEEccC---------------------------CcceEE
Confidence            555 6889998885 57777777666555431  2221211111111                           456899


Q ss_pred             EECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234           92 GTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (612)
Q Consensus        92 gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd  170 (612)
                      |+.||+ +-|||..+++... + .+.-+.|.++..+|+|+.++.+.....+.+.|+.+|.....=+...+-|+...|||+
T Consensus       377 gt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n  454 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             eccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence            999995 9999999998753 3 346688999999999999999988889999999999765554545668999999999


Q ss_pred             CCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234          171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       171 g~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ++++|-+-      ..|+++|+.+++....- ...+.=.+-+|.||+++|..-+
T Consensus       455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence            99999875      58999999998865543 2334445678999999887654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=3.3e-08  Score=99.60  Aligned_cols=198  Identities=19%  Similarity=0.340  Sum_probs=136.4

Q ss_pred             CcccceeEEEEcCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            3 SSNIRDILTSFSPALD--YFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         3 s~~V~~l~~~fspdg~--~las-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      .+.|..+  .+||.+.  .+|+     .|.-+.|+||...-+....       .+.+.        .....+...+.|..
T Consensus       165 ~~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~k--------sFFkadkvqm~WN~  227 (566)
T KOG2315|consen  165 VSGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVANK--------SFFKADKVQMKWNK  227 (566)
T ss_pred             ccceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhhc--------cccccceeEEEecc
Confidence            3456556  7888643  4443     2445678898765221111       11111        22234566778876


Q ss_pred             cccccccccCCcEEEEEECC-----------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE--ecCCcEE
Q 007234           76 VDRKKKRKLGSSLLVLGTGG-----------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVC  142 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~-----------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~--s~dg~v~  142 (612)
                      -.        ..+|++++.+           .++++++++...+...+.  ..++|.++.|+|+++-|+++  -.--++.
T Consensus       228 ~g--------t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  228 LG--------TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSPSGREFAVVYGFMPAKVT  297 (566)
T ss_pred             CC--------ceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECCCCCEEEEEEecccceEE
Confidence            54        4556665542           238888888556655553  57999999999999876665  3556899


Q ss_pred             EEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          143 EIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       143 iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      ++|++ +.++..+.  +++=+++-|+|.|++++.++     |.+-+||+.+.+++.++..-.  -+-+.|+|||.+++++
T Consensus       298 ifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  298 IFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTA  372 (566)
T ss_pred             EEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEE
Confidence            99974 66666654  56668899999999999887     799999999998888886443  3557999999999998


Q ss_pred             EcC-----CCeEEEEEcCCC
Q 007234          218 AVG-----ERYIALWRTDGV  232 (612)
Q Consensus       218 s~~-----d~~i~vwd~~~~  232 (612)
                      ...     |+.++||+....
T Consensus       373 TTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  373 TTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             eccccEEecCCeEEEEecCc
Confidence            743     567999998665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.02  E-value=5.2e-08  Score=98.93  Aligned_cols=190  Identities=13%  Similarity=0.145  Sum_probs=147.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccC--CCCCeEEEEEe------c--------------CCCEEEEEecCCcEEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE  143 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~s------p--------------~~~~l~s~s~dg~v~i  143 (612)
                      ..++|..+.||.+++|+...++....+.+.  -++..++..|.      |              +...++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            678999999999999999999887666421  13444555542      1              1234667778899999


Q ss_pred             EECCCCceeEEEe--cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       144 wd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      +++..|+....+.  .|.+.|.++.++.+-..+.+++  +.+..|+.+..+.++.+.+....+.+++.+|||..+++++ 
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            9999999988876  4778999999999888898887  7999999999999999999999999999999999988764 


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN  283 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~  283 (612)
                        +.|++||+++.+     .+..+.++...++++.|....---.|.+++++ ..+.-|.+|-...
T Consensus       164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence              789999999987     44677788888888888621000126666665 4466778886443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.99  E-value=1.1e-07  Score=98.84  Aligned_cols=226  Identities=13%  Similarity=0.124  Sum_probs=140.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      ++..++.++.+|.+..+|..+|+.+........     .++.+            .    ..        +..+++++.+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p------------~----v~--------~~~v~v~~~~  154 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP------------L----VA--------NGLVVVRTND  154 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC------------E----EE--------CCEEEEECCC
Confidence            456777888899999999999998876542111     00000            0    00        4567888899


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCe-----EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC----C-----
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G-----  161 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V-----~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----~-----  161 (612)
                      |.+..||..+|+.+++.... ...+     .+....  +..++.++.++.+..+|.++|+.+........    .     
T Consensus       155 g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~  231 (377)
T TIGR03300       155 GRLTALDAATGERLWTYSRV-TPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV  231 (377)
T ss_pred             CeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence            99999999999998876421 1111     111121  34678888899999999999987654332100    0     


Q ss_pred             -e-eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          162 -I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       162 -v-~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                       + .+..+. ++..++++. |.++.||.++++.+..... .. .....  .++..++.++ .+|.+..+|..+++..   
T Consensus       232 ~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~-~~G~l~~~d~~tG~~~---  302 (377)
T TIGR03300       232 DVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD-ADGVVVALDRRSGSEL---  302 (377)
T ss_pred             ccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC-CCCeEEEEECCCCcEE---
Confidence             0 111121 343333333 8999999999987766542 11 11222  2355666665 6999999999888643   


Q ss_pred             eeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                        ..... .........       ..+..+++++.+|.|+++|..+++.+...+
T Consensus       303 --W~~~~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       303 --WKNDELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             --EccccccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence              11111 111111111       134688899999999999999998876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.9e-07  Score=93.88  Aligned_cols=305  Identities=11%  Similarity=0.092  Sum_probs=179.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      -+.|||-|.||++--..| |.+|--.+-..++.|..  ..+.-+.|++.                           .++|
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~---------------------------EkYL  264 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPN---------------------------EKYL  264 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCc---------------------------cceE
Confidence            359999999999988776 68997666555555531  12333333333                           3344


Q ss_pred             EEEE----------CCC-cEEEEEcCCCeEEEEeccC-CCCCe-EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           90 VLGT----------GGG-DVLALAVSAGQLKWRLSDC-HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        90 ~~gs----------~~g-~I~vwd~~~~~~~~~~~~~-h~~~V-~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                      ++-+          .+| .++|||+.+|.....+..- ....+ .-+.||.|+++++--.. .+|.+++..+..++..-.
T Consensus       265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks  343 (698)
T KOG2314|consen  265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS  343 (698)
T ss_pred             EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence            4332          233 3999999999987666321 11222 34689999998887655 568999977654443323


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc---------C
Q 007234          157 ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------G  220 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~---------~  220 (612)
                      -...+|....|+|.+.+||-=.       ..+.+..+.+++.+++-.-|.-.=..+.|-.+|.+|+.--.         .
T Consensus       344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~  423 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ  423 (698)
T ss_pred             cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence            3346788899999999988654       36778888787777665544433344667777877765320         0


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec---CCcEEEEECCC-cc---eecccCCc
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IE---ELRNTKAT  293 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---dg~i~iwd~~~-~~---~~~~~~~~  293 (612)
                      -..+.|+.++.....    +...+-...++. .+|.     |.|..+++.+.   ..++.+|.+++ ..   .+..+.. 
T Consensus       424 f~n~eIfrireKdIp----ve~velke~vi~-FaWE-----P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-  492 (698)
T KOG2314|consen  424 FSNLEIFRIREKDIP----VEVVELKESVIA-FAWE-----PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-  492 (698)
T ss_pred             EeeEEEEEeeccCCC----ceeeecchheee-eeec-----cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-
Confidence            113455666554422    233333333433 3343     88888777654   45899998874 22   2222222 


Q ss_pred             eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEee-ccCCCeEEEEecCCCceEecccc
Q 007234          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKIL-VNSGEDINLNCSQDGVLLPMSQS  369 (612)
Q Consensus       294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~-~h~~~v~~l~~S~dg~~l~~s~s  369 (612)
                        ..+....++|.|+    .++.+..-+    -.|.+-..+-.. ......-. .|. ..+.+-|.|.|+|+ +++|
T Consensus       493 --~~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~~~-a~~k~~~~~eh~-~at~veWDPtGRYv-vT~s  556 (698)
T KOG2314|consen  493 --KFANTVFWSPKGR----FVVVAALVS----RRGDLEFYDTDY-ADLKDTASPEHF-AATEVEWDPTGRYV-VTSS  556 (698)
T ss_pred             --cccceEEEcCCCc----EEEEEEecc----cccceEEEecch-hhhhhccCcccc-ccccceECCCCCEE-EEee
Confidence              2223334788888    666666543    122222222111 11111111 233 56778899999999 7766

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.97  E-value=4.5e-09  Score=118.07  Aligned_cols=180  Identities=16%  Similarity=0.203  Sum_probs=145.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      ..+.++|+.||.|++|....++.+..+...-.+.|+.+.|+.+|+.+..+..||.+.+|... .++....+.|....+..
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred             CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence            56789999999999999999888766655555899999999999999999999999999975 77777888888888888


Q ss_pred             EECCCCCEEEEeC-----CeEEEEEcCCC---eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          166 AVSSDGKMLATAA-----GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       166 ~~spdg~~l~~~~-----g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      .|-.  ..+++++     +.+.+||.--.   ..+.  ..|.+.++++++.|..+.|++|| .+|.|++||++..+..  
T Consensus      2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~-- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR-- 2371 (2439)
T ss_pred             eeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH--
Confidence            8875  5666665     68999996422   2233  78999999999999999999998 7999999999887644  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                             |+-..     .      ....++++++..|.|+||++.....+...+
T Consensus      2372 -------h~~~~-----~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 -------HTFQA-----L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             -------HHhhh-----h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence                   21111     1      234789999999999999998877665443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.96  E-value=8.2e-08  Score=89.33  Aligned_cols=199  Identities=13%  Similarity=0.141  Sum_probs=127.0

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEE-EeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEE
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEID  145 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd  145 (612)
                      .-++.|.+.         +..++++..+|.+.+-+........ +..++|.-.++...|+. +.+.+++||.|+.+..||
T Consensus       124 ~lslD~~~~---------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D  194 (339)
T KOG0280|consen  124 ALSLDISTS---------GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD  194 (339)
T ss_pred             eeEEEeecc---------CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence            445667665         5669999999998855544443321 24478999999999976 446799999999999999


Q ss_pred             CC-CCceeEE-EecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCc-EEEEEE
Q 007234          146 PL-TGSLLGK-FRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSA  218 (612)
Q Consensus       146 ~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s  218 (612)
                      ++ .++.+.. -+.|..+|.+|.-+| .+.++++|+  ..|++||.++ ++++..-. -.+.|..+..+|.-. .++.++
T Consensus       195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C  273 (339)
T KOG0280|consen  195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC  273 (339)
T ss_pred             ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHH
Confidence            98 3333333 456788999999886 678999999  7999999984 56554432 347899999998543 222333


Q ss_pred             cCCCeEEEEEcCCCccccceeeEee-c-CCceeEEeEEecCCccCCCCcEEEEEec-CCcEE-EEECCCc
Q 007234          219 VGERYIALWRTDGVKKQSASCVLAM-E-HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCY-IWYGQNI  284 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~-iwd~~~~  284 (612)
                      ...| .+|-+...+...- ..++.. . |.+.... ..+.     ....+|++++. |+.|+ +|-.-++
T Consensus       274 Mh~G-~ki~~~~~~~~e~-~~~~~s~~~hdSl~YG-~DWd-----~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  274 MHNG-AKILDSSDKVLEF-QIVLPSDKIHDSLCYG-GDWD-----SKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             HhcC-ceEEEecccccch-heeeeccccccceeec-cccc-----cccceeeeeeccccceeeeeeeccC
Confidence            3444 5666665543220 011111 1 2222221 1121     23356888764 77755 7754444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.96  E-value=1e-06  Score=85.15  Aligned_cols=218  Identities=19%  Similarity=0.224  Sum_probs=136.4

Q ss_pred             CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC
Q 007234           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA  105 (612)
Q Consensus        26 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~  105 (612)
                      +|+|..||..+|+.+....... ...               .  .......+        +..+++++.++.+..||..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~---------------~--~~~~~~~~--------~~~v~~~~~~~~l~~~d~~t   55 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIG---------------G--PVATAVPD--------GGRVYVASGDGNLYALDAKT   55 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCS---------------S--EEETEEEE--------TTEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCC---------------C--ccceEEEe--------CCEEEEEcCCCEEEEEECCC
Confidence            6899999999999998875211 000               0  00000001        67788889999999999999


Q ss_pred             CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE-ecCCC---CeeEEEECCCCCEEEEeC--C
Q 007234          106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTK---GISCMAVSSDGKMLATAA--G  179 (612)
Q Consensus       106 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~---~v~~l~~spdg~~l~~~~--g  179 (612)
                      |+.+++...  ...+.... ..++..++.++.++.++.+|..+|+.+... .....   .........++..++++.  +
T Consensus        56 G~~~W~~~~--~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  132 (238)
T PF13360_consen   56 GKVLWRFDL--PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG  132 (238)
T ss_dssp             SEEEEEEEC--SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred             CCEEEEeec--ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence            999888753  22221111 224556777778899999999999998884 33211   112222222355555554  8


Q ss_pred             eEEEEEcCCCeeEEEEecCCCC----------EEEEEEeeCCcEEEEEEcCCCe-EEEEEcCCCccccceeeEeecCCce
Q 007234          180 QLKTFNCSDHKKMQKFSGHPGA----------VRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPAV  248 (612)
Q Consensus       180 ~i~lwd~~~~~~~~~~~~h~~~----------v~~l~~sp~~~~l~s~s~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~  248 (612)
                      .|..+|.++|+.+.....+...          +..-....++ .++.++ .++. +.+ |+.+++..     .... ...
T Consensus       133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~-d~~tg~~~-----w~~~-~~~  203 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAV-DLATGEKL-----WSKP-ISG  203 (238)
T ss_dssp             EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEE-ETTTTEEE-----EEEC-SS-
T ss_pred             cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-CCCeEEEE-ECCCCCEE-----EEec-CCC
Confidence            9999999999998888764422          1122222345 555554 4664 555 99998733     2222 122


Q ss_pred             eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      ....  ..     .++..|+.++.+|.|..||+.+|+.+.
T Consensus       204 ~~~~--~~-----~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  204 IYSL--PS-----VDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ECEC--EE-----CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             ccCC--ce-----eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            1111  12     566778888899999999999998764

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.90  E-value=1.5e-06  Score=98.67  Aligned_cols=235  Identities=13%  Similarity=0.203  Sum_probs=151.4

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEE----ECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            9 ILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +.+.|-++..-++.+..+|.|.+.    |..+...- .                  .|.......++.|.|.        
T Consensus        79 vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~------------------VG~vd~GI~a~~WSPD--------  131 (928)
T PF04762_consen   79 VSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-I------------------VGSVDSGILAASWSPD--------  131 (928)
T ss_pred             EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-E------------------EEEEcCcEEEEEECCC--------
Confidence            566899999989999999999988    54443321 1                  1344556778888776        


Q ss_pred             CCcEEEEEECCCcEEEEEcC----C---------C----------eEEEEe------------cc--------C---CCC
Q 007234           85 GSSLLVLGTGGGDVLALAVS----A---------G----------QLKWRL------------SD--------C---HPG  118 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~----~---------~----------~~~~~~------------~~--------~---h~~  118 (612)
                       +.++++.+.+|++.+.+-.    .         |          +...++            ..        +   +..
T Consensus       132 -~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd  210 (928)
T PF04762_consen  132 -EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD  210 (928)
T ss_pred             -cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence             7889999999997775321    0         0          000000            00        0   223


Q ss_pred             CeEEEEEecCCCEEEEEec---C---CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcC
Q 007234          119 GVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCS  187 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~  187 (612)
                      .-..++|..||.+|++.+.   .   ..+++|+- .|....+-..-.+--.+++|.|.|+++|+..     ..|.+|. +
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-r  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-R  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-c
Confidence            4567899999999998874   2   47999994 4766555443333346789999999999876     3566665 4


Q ss_pred             CCeeEEEEe----cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC
Q 007234          188 DHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (612)
Q Consensus       188 ~~~~~~~~~----~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (612)
                      +|-....|.    .....|..+.|++|+..|+..- .|. |++|...+-.--- +....+..... ...+.|++    .+
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWYL-Kqei~~~~~~~-~~~~~Wdp----e~  360 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWYL-KQEIRFSSSES-VNFVKWDP----EK  360 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEEE-EEEEEccCCCC-CCceEECC----CC
Confidence            554444443    3456799999999999998875 454 9999987754220 01111212222 22255652    35


Q ss_pred             CcEEEEEecCCcEEEEEC
Q 007234          264 GLYVLAISETGVCYIWYG  281 (612)
Q Consensus       264 ~~~l~t~s~dg~i~iwd~  281 (612)
                      ...|...+.+|.+..++.
T Consensus       361 p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCEEEEEecCCcEEEEEE
Confidence            567888888788777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.89  E-value=6.7e-08  Score=91.72  Aligned_cols=196  Identities=10%  Similarity=0.193  Sum_probs=135.9

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECC----CCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      +++++.+  .|.+....|+.|-..|++.-+.+.    .....+.+..|...+..+.|+.+                    
T Consensus        68 P~~~~~~--~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~--------------------  125 (404)
T KOG1409|consen   68 PSPCSAM--EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT--------------------  125 (404)
T ss_pred             CCCceEe--eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC--------------------
Confidence            4666555  999999999999989998887543    34455566667777777777766                    


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE--CCCCceeEEEe
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLTGSLLGKFR  156 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd--~~~~~~~~~~~  156 (612)
                             .+.+++.+.|..+.-.-.+.+..+..+.-  ....+++.|.-.  +.+.|...|.|..-.  ...-.++.++.
T Consensus       126 -------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~  194 (404)
T KOG1409|consen  126 -------HEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFN  194 (404)
T ss_pred             -------ceeEEEeccccceEEEeeccCCcccceEe--eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEc
Confidence                   55666666666655544444444322210  111112222111  344444445444433  34456788899


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      +|.+.+.+++|.|....+.+|.  ..+.+||+--++- ..++.+|...|..+...+--+.+++++ .||.|-+|+++..
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~-edg~i~~w~mn~~  272 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG-EDGGIVVWNMNVK  272 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc-CCCeEEEEeccce
Confidence            9999999999999999999988  7999999875543 467789999999998888888899987 7999999998643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.89  E-value=9.1e-06  Score=78.97  Aligned_cols=189  Identities=19%  Similarity=0.206  Sum_probs=125.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe-cCCCEEEEEecCCcEEEEECCCCceeEEEec-----CC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-----~~  159 (612)
                      +.++++-...+.|+.|+..++........    ...++.+. +++ .++.+..++ +.++|..+++.......     ..
T Consensus        12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~   85 (246)
T PF08450_consen   12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP----GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF   85 (246)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEESS----SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred             CEEEEEEcCCCEEEEEECCCCeEEEEecC----CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence            66777777889999999999877532211    27788888 564 566665544 55669988865444432     23


Q ss_pred             CCeeEEEECCCCCEEEEeC----------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      ..++.+++.|+|++.++..          |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.+..+.|..+++
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence            4788999999999777654          247777776 55433333 34557899999999988776667888999998


Q ss_pred             CCCcc-cc-ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          230 DGVKK-QS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       230 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      ..... .. ......+.........+++.     .+|++.++....+.|.+++.+ |+.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            75432 11 11222233333346777776     889888887788999999876 66543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.83  E-value=9.2e-08  Score=89.47  Aligned_cols=246  Identities=16%  Similarity=0.213  Sum_probs=157.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      ++-|...|.|||+|...|+|.+|.-....     ...+|++|.....   |-   ..-.....+..+.|+.+.+      
T Consensus        31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~------   98 (460)
T COG5170          31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG------   98 (460)
T ss_pred             EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC------
Confidence            44899999999999999999999765332     2333444432211   00   0011123455677877654      


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCe-------------------------------------EE-----EEeccCCCCCeEE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQ-------------------------------------LK-----WRLSDCHPGGVSA  122 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~-------------------------------------~~-----~~~~~~h~~~V~~  122 (612)
                       ...+++.+.+.+|++|.+....                                     .+     +.....|.--|.+
T Consensus        99 -r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170          99 -RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             -cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence             4667888899999999874320                                     00     0112467777899


Q ss_pred             EEEecCCCEEEEEecCCcEEEEECCCCce---eEEEecCC-----CCeeEEEECCCCC--EEEEeC-CeEEEEEcCCCee
Q 007234          123 ISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRAST-----KGISCMAVSSDGK--MLATAA-GQLKTFNCSDHKK  191 (612)
Q Consensus       123 l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~-----~~v~~l~~spdg~--~l~~~~-g~i~lwd~~~~~~  191 (612)
                      ++|+.|...++++ .|-.|.+|++.....   +..++.|.     .-|++..|+|...  ++.+.+ |.|++-|++....
T Consensus       178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence            9999998888887 577899999864432   22233333     3578899999654  344555 9999999985422


Q ss_pred             EE--------E--------EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC---------
Q 007234          192 MQ--------K--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---------  246 (612)
Q Consensus       192 ~~--------~--------~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------  246 (612)
                      ..        .        +.+-...|..+.|+++|+++++-.  =-+|++||.+..+..    +.+..-+         
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~d  330 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELND  330 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHHh
Confidence            11        1        112235678899999999998764  468999999876532    3333211         


Q ss_pred             ----ceeEE--eEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          247 ----AVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       247 ----~~~~~--~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                          ..+..  -+.|+     .|.+.+.+|+..+..-+|-
T Consensus       331 ~YEnDaifdkFeisfS-----gd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         331 VYENDAIFDKFEISFS-----GDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hhhccceeeeEEEEec-----CCcccccccccccceeeec
Confidence                11111  12333     7778899999888777774

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.4e-06  Score=87.75  Aligned_cols=277  Identities=13%  Similarity=0.158  Sum_probs=165.5

Q ss_pred             cceeEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEee
Q 007234            6 IRDILTSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~   74 (612)
                      |.-+  .|||+.+||++-+.           ...+.|||+.+|...+.|....++               ...-....|.
T Consensus       252 Vq~i--dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~---------------~~~WP~frWS  314 (698)
T KOG2314|consen  252 VQFI--DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP---------------YLKWPIFRWS  314 (698)
T ss_pred             ceee--ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC---------------ccccceEEec
Confidence            4444  99999999998653           147999999999999888643211               1122234454


Q ss_pred             ecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-----CCcEEEEECCCC
Q 007234           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTG  149 (612)
Q Consensus        75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~v~iwd~~~~  149 (612)
                      ..         +.++|--.. ..|.||+..+-..+- ...-.-..|..+.|+|.++.|+--..     -..+-+..+.++
T Consensus       315 ~D---------dKy~Arm~~-~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~  383 (698)
T KOG2314|consen  315 HD---------DKYFARMTG-NSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK  383 (698)
T ss_pred             cC---------CceeEEecc-ceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc
Confidence            43         445554443 668999887643331 11123467899999999887765432     134666777777


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC------------CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~------------g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s  216 (612)
                      +.+++-.-+.-.=..+-|-.+|.+|+.--            ..+.|+.++.... +..+ .-...|...+|-|.|..+++
T Consensus       384 ~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  384 REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEE
Confidence            77666444333223456777888887532            2455665554432 2222 24567888999999987776


Q ss_pred             EEcCC--CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe---cCCcEEEEECCCcceecccC
Q 007234          217 SAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       217 ~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~  291 (612)
                      .+..+  .++.+|.+++.... ...+..+  .......+.|+     |.|++++.+.   ..|.+.++|...........
T Consensus       463 i~g~~~k~tvsfY~~e~~~~~-~~lVk~~--dk~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~  534 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNIKK-PSLVKEL--DKKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS  534 (698)
T ss_pred             EEccccccceeEEEeecCCCc-hhhhhhh--cccccceEEEc-----CCCcEEEEEEecccccceEEEecchhhhhhccC
Confidence            55332  47888988743211 1122222  22444567777     9999998875   46899999987533322222


Q ss_pred             CceeEeecccccCCCCcccchhhhcccccceec
Q 007234          292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK  324 (612)
Q Consensus       292 ~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~  324 (612)
                      +.... .+...+.|.|+    ++.+++.-...+
T Consensus       535 ~eh~~-at~veWDPtGR----YvvT~ss~wrhk  562 (698)
T KOG2314|consen  535 PEHFA-ATEVEWDPTGR----YVVTSSSSWRHK  562 (698)
T ss_pred             ccccc-cccceECCCCC----EEEEeeehhhhc
Confidence            22221 22223566776    666655544333

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.3e-08  Score=101.66  Aligned_cols=233  Identities=14%  Similarity=0.171  Sum_probs=150.3

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      +..||.+  +--.+.+-+++++.|++|++|.++.       ..|..+++.|..++.++.|-.+                 
T Consensus       735 ~~~iRai--~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----------------  795 (1034)
T KOG4190|consen  735 QEKIRAI--AAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----------------  795 (1034)
T ss_pred             HHHhHHH--HhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----------------
Confidence            3455555  3333456688999999999998753       3366777777776665555544                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccC-CCCCeEEEEEec--CCCEEE-EEecCCcEEEEECCCCce
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFAT--HGSCIY-SAGADGMVCEIDPLTGSL  151 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp--~~~~l~-s~s~dg~v~iwd~~~~~~  151 (612)
                                .  -.+++.||-|.+||+-.|..+.+.... ..+.+..+..-+  +...++ .|+...+|+++|.+.++-
T Consensus       796 ----------l--r~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~  863 (1034)
T KOG4190|consen  796 ----------L--RSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW  863 (1034)
T ss_pred             ----------c--ceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence                      1  246778999999999888876544321 122233333323  333343 447889999999999887


Q ss_pred             eEEEecC-----CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          152 LGKFRAS-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       152 ~~~~~~~-----~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                      ...++..     ..-+.++++.|.|+.++++-  |.|.+.|.++|+.+..+..-.-....++ .|..+.++.+. -|.++
T Consensus       864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa-ldHsl  941 (1034)
T KOG4190|consen  864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA-LDHSL  941 (1034)
T ss_pred             eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc-cccee
Confidence            7776543     34688999999999999885  9999999999998877654443333333 36667777776 58888


Q ss_pred             EE-EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          225 AL-WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       225 ~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      .+ |..-.+...     +....+........       .-|.-+++....+.+.+|-
T Consensus       942 aVnWhaldgimh-----~q~kpppepahflq-------svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  942 AVNWHALDGIMH-----LQDKPPPEPAHFLQ-------SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             EeeehhcCCeee-----eccCCCCcchhhhh-------ccCceeEEeccCcEEEEEe
Confidence            88 876665322     22222222111111       1234566666666777774

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=3.8e-07  Score=95.21  Aligned_cols=245  Identities=15%  Similarity=0.132  Sum_probs=163.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ++.|+|.| +||.|+. ..|.|-|..+-+.++.+..|...|+.+.|++. ...+.-       ..++.       -.-+|
T Consensus        20 A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~-~~p~~l-------lS~~~-------~~lli   82 (1062)
T KOG1912|consen   20 AADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPA-PSPRDL-------LSPSS-------SQLLI   82 (1062)
T ss_pred             ccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccC-CCchhc-------cCccc-------cceeE
Confidence            34899988 7888874 47889999999999999888877777777665 111100       00000       03467


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec---CC-CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp---~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +++.-.|.|.+||...+..+..+ ..|..++.+++|-+   +. ..|+.-....++.+|+..+|+.+-+.........|+
T Consensus        83 AsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f  161 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF  161 (1062)
T ss_pred             EeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence            88888999999999998887666 46889999999976   33 356666778899999999999998888777788889


Q ss_pred             EECC-CCCEEEE-eC-CeEEEEEcC-------CCeeEEEEecCCC-----------------C--------EEEEEEeeC
Q 007234          166 AVSS-DGKMLAT-AA-GQLKTFNCS-------DHKKMQKFSGHPG-----------------A--------VRFMTFSDN  210 (612)
Q Consensus       166 ~~sp-dg~~l~~-~~-g~i~lwd~~-------~~~~~~~~~~h~~-----------------~--------v~~l~~sp~  210 (612)
                      .+.| |.+++.. ++ |.+.+-+.-       .++.++.-..|..                 +        ...++|+|.
T Consensus       162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~  241 (1062)
T KOG1912|consen  162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH  241 (1062)
T ss_pred             eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence            9998 5555544 44 766666542       1233332223322                 0        123567886


Q ss_pred             CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      -+.++... ..+.+.++|++-....   .+..++.. ..++..+.-      |....|++...||.+.+|--+
T Consensus       242 ~rn~lfi~-~prellv~dle~~~~l---~vvpier~~akfv~vlP~------~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  242 WRNILFIT-FPRELLVFDLEYECCL---AVVPIERGGAKFVDVLPD------PRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             hhceEEEE-eccceEEEcchhhcee---EEEEeccCCcceeEeccC------CCcceEEEEecCCeEEEEEee
Confidence            65444444 4788999999876543   22222221 223332211      455679999999999999643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.82  E-value=1.7e-06  Score=80.97  Aligned_cols=197  Identities=16%  Similarity=0.209  Sum_probs=111.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      +||||+.+||.+...|+|+++|+.. ..+..+......           .+..+..+..+.+.......++   ...+++
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~-----------~~d~~~Aiagl~Fl~~~~s~~w---s~ELlv  114 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSF-----------PGDLSDAIAGLIFLEYKKSAQW---SYELLV  114 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccccc-----------CCccccceeeeEeecccccccc---ceeEEE
Confidence            9999999999999999999999975 444444432111           0122233334444333211100   335677


Q ss_pred             EECCCcEEEEEcCCC-----eE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCc-----------EEEEECCCCceeE
Q 007234           92 GTGGGDVLALAVSAG-----QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----------VCEIDPLTGSLLG  153 (612)
Q Consensus        92 gs~~g~I~vwd~~~~-----~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-----------v~iwd~~~~~~~~  153 (612)
                      -.-.|.++-|-+..+     +.  ...+...+...|.++.|+|..+.|+.||....           +..|.+-++.+..
T Consensus       115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy  194 (282)
T PF15492_consen  115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY  194 (282)
T ss_pred             EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE
Confidence            777888777765322     11  12333445789999999999888888764221           2233322222211


Q ss_pred             EEecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          154 KFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +.          ..+. +.-+-....+-.+|.+-+.+...........|..|..||||+.|++.. .+|.|.+|++..-.
T Consensus       195 k~----------v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  195 KQ----------VTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSLR  262 (282)
T ss_pred             EE----------cccc-CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcch
Confidence            10          0111 111111111223333333222222223456799999999999999987 69999999998865


Q ss_pred             cc
Q 007234          234 KQ  235 (612)
Q Consensus       234 ~~  235 (612)
                      .+
T Consensus       263 ~~  264 (282)
T PF15492_consen  263 LQ  264 (282)
T ss_pred             hh
Confidence            44

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=1e-05  Score=78.67  Aligned_cols=217  Identities=18%  Similarity=0.200  Sum_probs=132.8

Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ++|.+ +|.++++--..+.|..|+..++.... +....                    ...+.....         +..+
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--------------------~~G~~~~~~---------~g~l   54 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--------------------PNGMAFDRP---------DGRL   54 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--------------------EEEEEEECT---------TSEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--------------------CceEEEEcc---------CCEE
Confidence            48998 67777776678999999998876543 22110                    112222211         3456


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEecc---C-CCCCeEEEEEecCCCEEEEEecC--------CcEEEEECCCCceeEEEec
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSD---C-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~---~-h~~~V~~l~~sp~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~  157 (612)
                      +++...+ +.++|+.+++.......   . .....+++++.|+|+..++....        |.|..++.. ++...... 
T Consensus        55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-  131 (246)
T PF08450_consen   55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-  131 (246)
T ss_dssp             EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred             EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence            6666544 45559999865432221   1 34568899999999976665533        568888876 55444433 


Q ss_pred             CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCC-e------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-K------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~-~------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      .-...+.|+|+||++.|+++.   +.|..|++... .      .+..+....+....+++..+|+..++.. ..+.|.++
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~  210 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF  210 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence            345678999999999887654   78999998532 1      1222333333478899999998766654 68899999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s  271 (612)
                      +.+ ++..     ..+.-+....+.++|.    .++.+.|+..+
T Consensus       211 ~p~-G~~~-----~~i~~p~~~~t~~~fg----g~~~~~L~vTt  244 (246)
T PF08450_consen  211 DPD-GKLL-----REIELPVPRPTNCAFG----GPDGKTLYVTT  244 (246)
T ss_dssp             ETT-SCEE-----EEEE-SSSSEEEEEEE----STTSSEEEEEE
T ss_pred             CCC-ccEE-----EEEcCCCCCEEEEEEE----CCCCCEEEEEe
Confidence            987 5533     2223332345666663    15656555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.82  E-value=4.3e-06  Score=82.84  Aligned_cols=143  Identities=18%  Similarity=0.181  Sum_probs=114.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-cEEEEECCCCceeEEEecCCCCeeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      ++++++.+. |...|.+...+-.+ +  -+|.+.|.-..+.-+++.++.|..|| .+-++|..+++.. .+...-+.|.+
T Consensus       332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~a  406 (668)
T COG4946         332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEA  406 (668)
T ss_pred             CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEE
Confidence            677777765 56667666666554 2  36888898888888888899999999 8999998877654 44556678999


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC----eEEEEEcCCCcc
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKK  234 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~----~i~vwd~~~~~~  234 (612)
                      +..+|+|+.++++.  ..|.+.|+.++.....=+...+-|+.+.|+|++++++.+- .+|    .|+++|+.+++.
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeE
Confidence            99999999999888  6888889999987555566778899999999999999864 555    689999998863

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1.1e-08  Score=102.24  Aligned_cols=175  Identities=14%  Similarity=0.139  Sum_probs=130.9

Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-------CceeEEEecCCCCeeEEEECCCCCEEEEeCCeEEEEEc
Q 007234          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC  186 (612)
Q Consensus       114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~  186 (612)
                      .+|...|..++--.+.+.+++++.|++|++|.++.       ..+..+++.|+.+|.++.|-.+-+++++++|-|.+||.
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDP  811 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDP  811 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecc
Confidence            58999999888777778899999999999998863       24667788999999999999999999999999999998


Q ss_pred             CCCeeEEEEe--cCCCCEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC
Q 007234          187 SDHKKMQKFS--GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (612)
Q Consensus       187 ~~~~~~~~~~--~h~~~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (612)
                      --++++..+.  ...+.+..+..-+  +...++.+++...+|+++|.+..+-...-.+.....+.....++...     +
T Consensus       812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa-----~  886 (1034)
T KOG4190|consen  812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA-----D  886 (1034)
T ss_pred             cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec-----c
Confidence            8777665432  1223333343333  34445555457889999999987644111222223455556777776     8


Q ss_pred             CCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          263 AGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       263 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      .|++++++-.+|.|.+.|.++|+.+..-.|-
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm  917 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPM  917 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence            9999999999999999999999987654443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=1e-06  Score=91.95  Aligned_cols=189  Identities=13%  Similarity=0.124  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCE-EEEEeCC---CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         9 l~~~fspdg~~-las~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +..+|||||+. ++..+.+   ..|.++|+.+|+...... ..+.                  .....|.+.        
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~------------------~~~~~~SPD--------  243 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM------------------LVVSDVSKD--------  243 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc------------------EEeeEECCC--------
Confidence            56799999985 6654443   468888999887655332 1111                  122335433        


Q ss_pred             CCcEE-EEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEEEecC
Q 007234           85 GSSLL-VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        85 ~~~~l-~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~  158 (612)
                       ++.+ ++.+.+|  .|.++|+.++... .+.. +........|+|||+.|+-.+. .+  .|+++|+.+++..+.....
T Consensus       244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g  320 (419)
T PRK04043        244 -GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG  320 (419)
T ss_pred             -CCEEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence             4434 4444444  4888898888754 3422 3333445689999988776653 23  6888899887764433221


Q ss_pred             CCCeeEEEECCCCCEEEEeC--C---------eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEE
Q 007234          159 TKGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIA  225 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g---------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~  225 (612)
                      .   ....|+|||+.++...  .         .|++.|+.++.. +.+... .......|+|||+.++......+  .+.
T Consensus       321 ~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~  395 (419)
T PRK04043        321 K---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG  395 (419)
T ss_pred             C---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence            1   1248999999988654  1         588889888764 444433 23335889999998877653333  355


Q ss_pred             EEEcCCC
Q 007234          226 LWRTDGV  232 (612)
Q Consensus       226 vwd~~~~  232 (612)
                      +.+++..
T Consensus       396 ~~~l~g~  402 (419)
T PRK04043        396 IIRLNYN  402 (419)
T ss_pred             EEecCCC
Confidence            5666554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.81  E-value=1.2e-06  Score=80.70  Aligned_cols=197  Identities=11%  Similarity=-0.007  Sum_probs=131.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      -.+|+.|+..|...+|.+.+.+....+-..|...|+-+.=..+ .--+..++.|.++++.++.-+..........-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            4578999999999999999887655544445554433221112 223777889999999988655433333222234789


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCe--eEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHK--KMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +.+++|++++++.+  ..|..|.+....  .++ .....+..--+..|+.....++++. .||++.|||++.........
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence            99999999999877  788888876432  223 2222333345678888888888886 89999999998765443333


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCc--EEEEEecCCcEEEEECCCcceec
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      ..+.+++...+..+.|+     +.|.  +|+..-.-+.+++.|++++...+
T Consensus       243 sstrp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             cccCCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCceee
Confidence            34455777778888887     4332  33333335689999998887654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=1.1e-07  Score=90.17  Aligned_cols=246  Identities=13%  Similarity=0.076  Sum_probs=150.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeE----EEEeccCCC------------CCeEEEEEecCCC--EEEEEecCCcEEEEECC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~----~~~~~~~h~------------~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~  147 (612)
                      |.+|++|..+|.|.+|.-.....    .....+.|.            ..|..+.|.++++  .++....|.+|++|-+.
T Consensus        37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~  116 (433)
T KOG1354|consen   37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR  116 (433)
T ss_pred             cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence            89999999999999996543221    222223343            4688899988665  46777799999999865


Q ss_pred             CCc-----------------------------------eeEEE-ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe
Q 007234          148 TGS-----------------------------------LLGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK  190 (612)
Q Consensus       148 ~~~-----------------------------------~~~~~-~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~  190 (612)
                      ...                                   +.+.+ .+|..-|.++.++.|+..+++++ =.|.+|+++-..
T Consensus       117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d  196 (433)
T KOG1354|consen  117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID  196 (433)
T ss_pred             ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence            321                                   01111 13556789999999999999999 699999986432


Q ss_pred             -e--EEEEecCC-----CCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCccccc-eeeEeecC----------CceeE
Q 007234          191 -K--MQKFSGHP-----GAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSA-SCVLAMEH----------PAVFM  250 (612)
Q Consensus       191 -~--~~~~~~h~-----~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~~~~~-~~~~~~~~----------~~~~~  250 (612)
                       .  +-.++.+.     .-|++..|+|.. ..++.++ ..|+|++.|++....-.. ...+....          -...+
T Consensus       197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI  275 (433)
T KOG1354|consen  197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI  275 (433)
T ss_pred             CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence             2  22222232     347888999964 4555555 589999999984321100 01111110          11223


Q ss_pred             EeEEecCCccCCCCcEEEEEecCCcEEEEECC-CcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCce
Q 007234          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (612)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~  329 (612)
                      +-+.|+     ++|+++++-.. -+|++||+. ..+.+.+.+.+     +..      +           +..+.++.  
T Consensus       276 SDvKFs-----~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh-----~~l------r-----------~kLc~lYE--  325 (433)
T KOG1354|consen  276 SDVKFS-----HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH-----EYL------R-----------SKLCSLYE--  325 (433)
T ss_pred             hceEEc-----cCCcEEEEecc-ceeEEEeccccCCcceEEeeh-----HhH------H-----------HHHHHHhh--
Confidence            445555     99999987655 489999974 23333222111     000      0           00000000  


Q ss_pred             EEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                           ....+           .-..++||.++..+ +|||..+..++.+.
T Consensus       326 -----nD~If-----------dKFec~~sg~~~~v-~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  326 -----NDAIF-----------DKFECSWSGNDSYV-MTGSYNNVFRVFNL  358 (433)
T ss_pred             -----ccchh-----------heeEEEEcCCcceE-ecccccceEEEecC
Confidence                 01111           34567899999999 99999999999984

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=1.9e-06  Score=99.71  Aligned_cols=212  Identities=11%  Similarity=0.122  Sum_probs=130.2

Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCcccccccccc-ccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .++++++++.|..+.. .+.|+++|..++. +.++.+...  ....+... ......-.....+++.+.+        +.
T Consensus       628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~  696 (1057)
T PLN02919        628 GLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVN--------EK  696 (1057)
T ss_pred             EEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence            3489999887666554 5789999988765 334432110  00000000 0000001112345554433        55


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEec-------cCC------CCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLS-------DCH------PGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLG  153 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~-------~~h------~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~  153 (612)
                      ++++.+.++.|++||..++....-.-       .++      -...++++|+|+++.|+.+ +.++.|++||+.++....
T Consensus       697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL  776 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            66777778889999998876531110       011      1245679999999865544 567899999998765321


Q ss_pred             EEec-------------C--------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC------------
Q 007234          154 KFRA-------------S--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------  198 (612)
Q Consensus       154 ~~~~-------------~--------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------  198 (612)
                      ...+             .        -.....++++++|.++++-.  +.|++||..++.... +.+.            
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~  855 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALK  855 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccc
Confidence            1100             0        11346899999998777665  799999998876543 2221            


Q ss_pred             --CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          199 --PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       199 --~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                        -.....++++++|+.+++-+ .++.|++||+.++..
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence              12467899999998766654 789999999988764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=6.5e-08  Score=93.89  Aligned_cols=159  Identities=11%  Similarity=0.172  Sum_probs=108.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      +.++|+++++|.+..+....+++.........+-               .........+.+.+...         ...+.
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~---------------~~~~v~~~~~ai~~~~~---------~~sv~  123 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL---------------DVSCVPKRPTAISFIRE---------DTSVL  123 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceee---------------eEeecccCcceeeeeec---------cceEE
Confidence            3789999999999888887777765443211110               00001112223333333         34566


Q ss_pred             EEECCCcEE---EEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE-ecCCCCeeEEE
Q 007234           91 LGTGGGDVL---ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMA  166 (612)
Q Consensus        91 ~gs~~g~I~---vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~  166 (612)
                      ++...|+++   +|++..+.+.  ..-||-+.+++++|+||+++++++..|..|++-....--.+..| -+|+..|..++
T Consensus       124 v~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             EEeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            666666654   4554445543  33589999999999999999999999999999876654445543 46889999999


Q ss_pred             ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe
Q 007234          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFS  196 (612)
Q Consensus       167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~  196 (612)
                      +-++. .|++++  +++++||+.+|+.+.++.
T Consensus       202 l~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            98654 466666  799999999999886654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=9.2e-07  Score=91.49  Aligned_cols=243  Identities=11%  Similarity=0.136  Sum_probs=157.8

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|.--|++|+....|+|+||.||.++|..+.+...-...++ -..+..++.+.. ..||. ..+..+.|+...       
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH~-~sV~vvTWNe~~-------   83 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGHN-ASVMVVTWNENN-------   83 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccCc-ceEEEEEecccc-------
Confidence            34445779999999999999999999998876543333332 112233333333 34553 345567787664       


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCe
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGI  162 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v  162 (612)
                        +.+-+...+|-|.||-+-.|.-.... .....+.|.+++|+.||..+.....||.|.+=.+...+.-. .+++  ...
T Consensus        84 --QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l  159 (1189)
T KOG2041|consen   84 --QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLL  159 (1189)
T ss_pred             --ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hec
Confidence              44778888999999998777643222 23456789999999999999999999988776654333221 1222  234


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCC-------eeEE----EEecCCCCEEEEEEe--------eCCcEEEEEEcCC
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQ----KFSGHPGAVRFMTFS--------DNGKYVLSSAVGE  221 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~-------~~~~----~~~~h~~~v~~l~~s--------p~~~~l~s~s~~d  221 (612)
                      ..+.|++|.+.++.+-  |.+.+||.+..       .+.-    .+......|..+.|.        |+...|+.+- ..
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~n  238 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-AN  238 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cC
Confidence            5789999998887765  99999997643       1111    112222335566664        5777888775 78


Q ss_pred             CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (612)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d  273 (612)
                      |.+.+..-......   .+.   .....+....|+     ++|..|++++.+
T Consensus       239 Gr~QiMR~eND~~P---vv~---dtgm~~vgakWn-----h~G~vLAvcG~~  279 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEP---VVV---DTGMKIVGAKWN-----HNGAVLAVCGND  279 (1189)
T ss_pred             ceehhhhhcCCCCC---eEE---ecccEeecceec-----CCCcEEEEccCc
Confidence            88888654443322   122   222444556666     999999999875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=1.2e-05  Score=83.92  Aligned_cols=181  Identities=12%  Similarity=0.007  Sum_probs=113.2

Q ss_pred             Cc-EEEEEECC---CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecC--CcEEEEECCCCceeEEEecC
Q 007234           86 SS-LLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGAD--GMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        86 ~~-~l~~gs~~---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~d--g~v~iwd~~~~~~~~~~~~~  158 (612)
                      ++ .++..+..   ..|+++|+.+++...-. . ..+......|+|||+.++. .+.+  ..|.++|+.+++.. .+..+
T Consensus       199 G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~  275 (419)
T PRK04043        199 EQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-S-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY  275 (419)
T ss_pred             CCcEEEEEEccCCCCEEEEEECCCCcEEEEe-c-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccC
Confidence            44 35544443   34999999988765332 2 4456677889999987654 3333  46888898877643 34433


Q ss_pred             CCCeeEEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--------CeEE
Q 007234          159 TKGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------RYIA  225 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--------~~i~  225 (612)
                      ........|+|||+.|+..+   |  .|+++|+.+++..+.... ...  ...|+|||++++..+...        ..|.
T Consensus       276 ~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~  352 (419)
T PRK04043        276 PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLY  352 (419)
T ss_pred             CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence            33344568999999887665   2  799999988876433321 111  248999999988876432        3677


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCc
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI  284 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~  284 (612)
                      +.|+.++...      .+.... ......|+     |||+.++..+.++   .+.+.++...
T Consensus       353 v~d~~~g~~~------~LT~~~-~~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        353 LISTNSDYIR------RLTANG-VNQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEECCCCCeE------ECCCCC-CcCCeEEC-----CCCCEEEEEEccCCcEEEEEEecCCC
Confidence            8888777533      111111 11224465     9999887776533   3556666443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=2e-05  Score=76.26  Aligned_cols=198  Identities=15%  Similarity=0.178  Sum_probs=136.6

Q ss_pred             EEEEcC-CCCEEEEEeCCCc-EEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fsp-dg~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .++.+| ++..+|.+-.-|+ ..+||..+++..+.+....+...         .||       -. ++.+        ++
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---------yGH-------g~-fs~d--------G~   63 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---------YGH-------GV-FSPD--------GR   63 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---------ecC-------EE-EcCC--------CC
Confidence            458999 5667777877665 67899999999887753222110         111       11 2222        66


Q ss_pred             EEEEEEC-----CCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEecCCCEEEEEe------------------cCCcEEE
Q 007234           88 LLVLGTG-----GGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGMVCE  143 (612)
Q Consensus        88 ~l~~gs~-----~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s------------------~dg~v~i  143 (612)
                      +|++.-+     .|.|-|||.. +-+.+.++ ..|.-.-..+.+.|||+.|+.+.                  .+.++..
T Consensus        64 ~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~  142 (305)
T PF07433_consen   64 LLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY  142 (305)
T ss_pred             EEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE
Confidence            6666544     3569999999 44555555 45666778899999998888873                  2345667


Q ss_pred             EECCCCceeEEEec----CCCCeeEEEECCCCCEEEEeC--C-------eEEEEEcCCCeeEEEEe-------cCCCCEE
Q 007234          144 IDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKFS-------GHPGAVR  203 (612)
Q Consensus       144 wd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~--g-------~i~lwd~~~~~~~~~~~-------~h~~~v~  203 (612)
                      .|..+|+.+....-    |...+..+++.++|..++..-  |       .+.+++...  .+..+.       .-.+.+-
T Consensus       143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~g  220 (305)
T PF07433_consen  143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIG  220 (305)
T ss_pred             EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceE
Confidence            78888988877443    666899999999998877664  2       355555433  222222       3347899


Q ss_pred             EEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +|++++++.++++++-..+.+.+||..++...
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            99999999988777767889999999998744

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.72  E-value=2e-06  Score=89.89  Aligned_cols=226  Identities=16%  Similarity=0.119  Sum_probs=137.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +..+..++.+|.+..+|.++|+.+.+.+....     .++.+            +..            +..+++++.+|
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP------------~v~------------~~~v~v~~~~g  170 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP------------VVS------------DGLVLVHTSNG  170 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC------------EEE------------CCEEEEECCCC
Confidence            45666777899999999999998877653211     01111            000            45678888999


Q ss_pred             cEEEEEcCCCeEEEEeccCCCCC----eEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-------CeeEE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGG----VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCM  165 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~----V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l  165 (612)
                      .+..+|..+|+.+++........    ..+...  .+..++.++.+|.+..+|..+|+.+-.......       ....+
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~  248 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV  248 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence            99999999999998875321100    011111  233577788899999999999987655432110       01111


Q ss_pred             EECC---CCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          166 AVSS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       166 ~~sp---dg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      ..+|   ++..++++. |.++.+|..+|+.+.+..-  .....+.  ..+..++.++ .++.+..+|..+++..     .
T Consensus       249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~tG~~~-----W  318 (394)
T PRK11138        249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRGGVEL-----W  318 (394)
T ss_pred             CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCCCcEE-----E
Confidence            1222   444444444 8999999999987655431  1111222  2344566665 6899999999888643     1


Q ss_pred             eecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          242 AMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       242 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      .... ..........       .+..|+.++.+|.|+..|..+|+.+...
T Consensus       319 ~~~~~~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        319 SQSDLLHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             cccccCCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            1111 0111111111       2356788899999999999999887544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=1.3e-08  Score=106.97  Aligned_cols=192  Identities=16%  Similarity=0.288  Sum_probs=136.0

Q ss_pred             cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEE
Q 007234           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCE  143 (612)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~i  143 (612)
                      ..++|+++...         .+.+++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.+|..+++.+.-.  -..+
T Consensus      1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence            35666666544         678999999999999999999988666 68999999999999999877665332  5789


Q ss_pred             EECCC-CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ec---CCCCEEEEEEeeCCcEEEE
Q 007234          144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       144 wd~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~---h~~~v~~l~~sp~~~~l~s  216 (612)
                      |++.+ +.+.++|.    .-.++.|+.....-+.|.  ....+||++|+.++.++ .+   ..-.-++..|+|+.++++ 
T Consensus      1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            99853 45555554    346788987655445555  68999999999877663 22   122236678999998765 


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                         +||  .+||.+..+.+     ..+..-... -...|     +|.|..++.-++     |||+++.+.+...+..
T Consensus      1247 ---ndG--vLWDvR~~~aI-----h~FD~ft~~-~~G~F-----HP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFTDY-GGGGF-----HPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ---eCc--eeeeeccHHHH-----hhhhhheec-ccccc-----cCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence               577  47999887543     222221111 12223     499999888775     8999999988765544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.70  E-value=1e-05  Score=78.17  Aligned_cols=188  Identities=22%  Similarity=0.281  Sum_probs=124.3

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        13 fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g   92 (612)
                      ..+++.++.+++.++.|..||..+|+.+..+... ..+.              ...      ...        +..++++
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~--------------~~~------~~~--------~~~v~v~   82 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPIS--------------GAP------VVD--------GGRVYVG   82 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGG--------------SGE------EEE--------TTEEEEE
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccc--------------cee------eec--------ccccccc
Confidence            3346667777789999999999999999887641 1111              000      000        6678888


Q ss_pred             ECCCcEEEEEcCCCeEEEEeccCCC---CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC--------
Q 007234           93 TGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------  161 (612)
Q Consensus        93 s~~g~I~vwd~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--------  161 (612)
                      +.++.+..+|..+|+.+++......   ..........++..++.+..++.|..+|.++|+.+.........        
T Consensus        83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  162 (238)
T PF13360_consen   83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSF  162 (238)
T ss_dssp             ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred             cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence            8889999999999999988422121   11223333334778888888999999999999998887764422        


Q ss_pred             --eeEEEECCCCCEEEEeC-Ce-EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          162 --ISCMAVSSDGKMLATAA-GQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       162 --v~~l~~spdg~~l~~~~-g~-i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                        +.+-....++..+++.. +. +.+ |+.+++.+.+..  ...+.. ....++..++.++ .++.+..||+.+++.
T Consensus       163 ~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  163 SDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             TTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             cccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence              11222333554444444 64 555 999998664333  222222 1456677788877 799999999999874

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.69  E-value=7.5e-06  Score=85.54  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=140.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      .+..+.+++.+|.|.-+|..+|+.+...+.....   ..++.. ......  .....            .+..+++++.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~  129 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK  129 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence            3557777788899999999999998876532210   000000 000000  00000            05678889999


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEE-EEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe-----eEEEECC
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS  169 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp  169 (612)
                      |.+..+|..+|+.+++....  ..+.+ ...  .+..++.++.++.+..+|..+|+.+-.+......+     .+.... 
T Consensus       130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-  204 (394)
T PRK11138        130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-  204 (394)
T ss_pred             CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence            99999999999998877432  22222 112  24467778889999999999999887765431111     111111 


Q ss_pred             CCCEEEEeC-CeEEEEEcCCCeeEEEEecCCC-------CEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       170 dg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~-------~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      ++..++... |.+..+|..+|+.+.+......       ....+.-+|  .+..++.++ .++.+..+|..+++..    
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~----  279 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV----  279 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE----
Confidence            333444333 8999999999987655431110       001111122  234555555 6899999999988744    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                       ....... ... ..       ..+..++.++.+|.+..+|..+|+.+...
T Consensus       280 -W~~~~~~-~~~-~~-------~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        280 -WKREYGS-VND-FA-------VDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             -EeecCCC-ccC-cE-------EECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence             2211111 001 11       23567788889999999999999876543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.67  E-value=5.6e-06  Score=76.37  Aligned_cols=188  Identities=13%  Similarity=0.066  Sum_probs=127.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEe-eccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      .+||.||..|...+|...+.+..... ..+...+.   ..          ..-|..             ..-+..++.|.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---~~----------~r~cd~-------------~~~~~i~sndh  138 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---LV----------KRYCDL-------------KFPLNIASNDH  138 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchh---hh----------hhhccc-------------ccceeeccCCc
Confidence            48999999999999999866543322 22211111   00          000000             23477889999


Q ss_pred             cEEEEEcCCCeEEEEeccCCCC--CeEEEEEecCCCEEEEEecCCcEEEEECCCC--ceeEEE-ecCCCCeeEEEECCCC
Q 007234           97 DVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKF-RASTKGISCMAVSSDG  171 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~--~~~~~~-~~~~~~v~~l~~spdg  171 (612)
                      ++++.++..+.....+   |..  .+.+++++++++++++.+....|..|.+...  ..+.+. ......=.+..|+...
T Consensus       139 t~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  139 TGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             ceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            9999888766543332   333  3889999999999999999999999987643  233322 2233445688899988


Q ss_pred             CEEEEeC--CeEEEEEcCCCeeE-----EEEecCCCCEEEEEEeeCCc--EEEEEEcCCCeEEEEEcCCCccc
Q 007234          172 KMLATAA--GQLKTFNCSDHKKM-----QKFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       172 ~~l~~~~--g~i~lwd~~~~~~~-----~~~~~h~~~v~~l~~sp~~~--~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ..+|++.  |++.|||++.....     .+-+.|.+.+..+.|++.|.  +|+.+ ..-+.+.+.|+++....
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCcee
Confidence            9999988  99999999875332     22356899999999998664  34443 35678999999987643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.61  E-value=5.5e-07  Score=87.55  Aligned_cols=162  Identities=12%  Similarity=0.146  Sum_probs=108.9

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEECCCCc----eeEEEecCCCCeeEEEECCCCCEEEEeC--C---eEEEEEcCCC
Q 007234          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH  189 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~spdg~~l~~~~--g---~i~lwd~~~~  189 (612)
                      .+..+.+++++++++++..+....++++....    +...... ....+++.+..+......+.  |   .+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            34556678888888888888877777765432    2333322 23345566655555555444  4   5555655554


Q ss_pred             eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE
Q 007234          190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (612)
Q Consensus       190 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  269 (612)
                      .+ ..+-||-+.++.++|+||+++++++. .|..|++-........   ..+-++|.. +++..+.      -++..|++
T Consensus       143 ~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~e-FVS~isl------~~~~~LlS  210 (390)
T KOG3914|consen  143 RC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKE-FVSTISL------TDNYLLLS  210 (390)
T ss_pred             Cc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHh-heeeeee------ccCceeee
Confidence            43 34458999999999999999999985 7999998776655433   223344444 4444555      34577999


Q ss_pred             EecCCcEEEEECCCcceecccCCc
Q 007234          270 ISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       270 ~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      ++.|++|++||+.+|+.+.+..-.
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             cCCCCcEEEEecccCCcccccchh
Confidence            999999999999999998655443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.61  E-value=3.5e-07  Score=83.77  Aligned_cols=144  Identities=13%  Similarity=0.223  Sum_probs=91.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEe-----cCCcEEEEECCCCceeEEEecCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                      ++-++++..||.+.+++.+.-..+ .++...|.+ -.+.++...+..+.++.     .-+..++|+++..+.+..-....
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            567999999999999987652111 111111221 12223333444444332     22345566654433222211122


Q ss_pred             CCeeEEEECCCCCEEE-EeC--CeEEEEEcCCCee-EEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLA-TAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~-~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ..|++++-+|..+.++ +|+  |.+-+||.++... ...+..|+.++..+-|+| ++..|++++ +||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCC
Confidence            3599999999766555 444  8999999988743 445678999999999998 456788887 899999999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.53  E-value=5.6e-05  Score=73.17  Aligned_cols=193  Identities=19%  Similarity=0.301  Sum_probs=133.3

Q ss_pred             CcEEEEEECCCc-EEEEEcCCCeEEEEeccCCCCCe--EEEEEecCCCEEEEEe-----cCCcEEEEECC-CCceeEEEe
Q 007234           86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR  156 (612)
Q Consensus        86 ~~~l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~s-----~dg~v~iwd~~-~~~~~~~~~  156 (612)
                      ...++.+-.-|+ ..+||..+++....+.. ..+.-  ---.|++||++|++.-     ..|.|-+||.. +.+.+.+|.
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~   95 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP   95 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence            567888888888 78999999988765532 11111  1236999999999874     35789999998 678888898


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC-C-------------------eEEEEEcCCCeeEEE--E--ecCCCCEEEEEEeeCCc
Q 007234          157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK  212 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~-g-------------------~i~lwd~~~~~~~~~--~--~~h~~~v~~l~~sp~~~  212 (612)
                      .+.-....+.+.|||+.|+++. |                   ++...|..+|+.+.+  +  .-|...|..+++.++|.
T Consensus        96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen   96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence            8877888999999998888875 2                   355567778887766  4  33778899999999997


Q ss_pred             EEEEEEcCCC-------eEEEEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEE
Q 007234          213 YVLSSAVGER-------YIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW  279 (612)
Q Consensus       213 ~l~s~s~~d~-------~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iw  279 (612)
                      .++.. .+.+       -+-+++-...  .   ..+...     .-...+.+++++     +++.++++.|- .|.+.+|
T Consensus       176 V~~a~-Q~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  176 VAFAM-QYQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             EEEEE-ecCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence            55543 2333       2333332221  1   011111     112455667776     88887766664 6799999


Q ss_pred             ECCCcceeccc
Q 007234          280 YGQNIEELRNT  290 (612)
Q Consensus       280 d~~~~~~~~~~  290 (612)
                      |..+++.+...
T Consensus       245 d~~tg~~~~~~  255 (305)
T PF07433_consen  245 DAATGRLLGSV  255 (305)
T ss_pred             ECCCCCEeecc
Confidence            99999887643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.51  E-value=1.6e-06  Score=79.53  Aligned_cols=189  Identities=11%  Similarity=0.111  Sum_probs=111.0

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEe-----------ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee-EE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRL-----------SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GK  154 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~-----------~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~-~~  154 (612)
                      ..++++..++.+..+...++.+....           +..|+++-.+-+.+--+..+++++.||.+.+++.+.-..+ +.
T Consensus        48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~  127 (319)
T KOG4714|consen   48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR  127 (319)
T ss_pred             heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhh
Confidence            34666666666666555444433111           1123322222222223456899999999999997652111 11


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      +......-.+.++...++.+.++.       +..+.|+++..+.+..-...-..|.+++-+|..+.++.+|.+||.+-+|
T Consensus       128 i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~  207 (319)
T KOG4714|consen  128 IPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLW  207 (319)
T ss_pred             cccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEE
Confidence            221112223344445677777665       3566777664433221111223488999999888888888899999999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      |.+.....    +-.+..+...+.-+-|.+    .++..|+++++||.+.-||..+
T Consensus       208 d~rn~~~p----~S~l~ahk~~i~eV~FHp----k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  208 DARNVAMP----VSLLKAHKAEIWEVHFHP----KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             Ecccccch----HHHHHHhhhhhhheeccC----CCchheeEecCCCcEEEEcCCC
Confidence            99987433    112223333334444542    5778999999999999999765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.48  E-value=1.9e-05  Score=82.99  Aligned_cols=203  Identities=13%  Similarity=0.179  Sum_probs=136.9

Q ss_pred             CCcccceeEEEEcCCC------------CEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccccccccccccee
Q 007234            2 GSSNIRDILTSFSPAL------------DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT   69 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg------------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~   69 (612)
                      +++.|..+  .|+|-.            -+||++.-.|.|.+||...+..+..+..+..++                  .
T Consensus        54 h~s~V~~V--rWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~------------------q  113 (1062)
T KOG1912|consen   54 HQSAVTSV--RWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSV------------------Q  113 (1062)
T ss_pred             CccceeEE--EeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcch------------------h
Confidence            45667555  777631            256777778999999999998888886555443                  3


Q ss_pred             EEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCC
Q 007234           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~  148 (612)
                      .++|.+.....     ..++++-.....+.+||..+|+..++...+| ....|+.+.| |.+.+..-+..|.|.+-+.-.
T Consensus       114 dl~W~~~rd~S-----rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  114 DLCWVPARDDS-----RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             heeeeeccCcc-----hheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence            45565543320     3567777778889999999999999885544 5677899988 666677666777777665421


Q ss_pred             -------CceeEEEecCCC------------C-------------eeEEEECCCCCEE-EEeC-CeEEEEEcCCCeeEEE
Q 007234          149 -------GSLLGKFRASTK------------G-------------ISCMAVSSDGKML-ATAA-GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       149 -------~~~~~~~~~~~~------------~-------------v~~l~~spdg~~l-~~~~-g~i~lwd~~~~~~~~~  194 (612)
                             |+..+.-..|..            .             ....+|+|.-+.+ +..- ..+.++|++-..++..
T Consensus       188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~v  267 (1062)
T KOG1912|consen  188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAV  267 (1062)
T ss_pred             CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEE
Confidence                   222222222111            0             1124667755433 3333 8999999999888888


Q ss_pred             EecCCCCEEEEEEeeCCc--EEEEEEcCCCeEEEEEcCC
Q 007234          195 FSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp~~~--~l~s~s~~d~~i~vwd~~~  231 (612)
                      ..-..+.+.-+.+-|+++  .|++. ..||.+.+|--+.
T Consensus       268 vpier~~akfv~vlP~~~rd~Lfcl-H~nG~ltirvrk~  305 (1062)
T KOG1912|consen  268 VPIERGGAKFVDVLPDPRRDALFCL-HSNGRLTIRVRKE  305 (1062)
T ss_pred             EEeccCCcceeEeccCCCcceEEEE-ecCCeEEEEEeec
Confidence            877777777788888765  45554 4799999997554

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=98.46  E-value=6.2e-07  Score=84.72  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             CCchhhhhhhccc---------cccccCChhHHHHhhhccC------hhhHHHHHHHHHHHHhcCCCCccchHHHHHHHH
Q 007234          471 SNSALEATLFNGI---------DFETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL  535 (612)
Q Consensus       471 ~~~~~~~~L~~~l---------~~~~~~~~~~I~~ti~~Lp------~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll  535 (612)
                      ..+.++..|..+-         +.++.++|+.|+..||+|.      ...+..||++|..+|.++.+ +|+++.|+..+|
T Consensus       109 ~~s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~d-fElvQa~l~vFL  187 (237)
T PF04192_consen  109 FESEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRD-FELVQAYLSVFL  187 (237)
T ss_pred             ccCHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence            3456777776644         7888899999999999999      67888999999999988775 999999999999


Q ss_pred             HHhcccccCCcC---hHHHHHHHHHHHHhhccc
Q 007234          536 VNHGHHLLSQES---LTPMLSSLYKVFRSASCK  565 (612)
Q Consensus       536 ~~H~~~l~s~~~---l~~~L~~l~~~l~~r~~~  565 (612)
                      ++||..|+..++   |+..|..|.+..++...+
T Consensus       188 k~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~  220 (237)
T PF04192_consen  188 KVHGDVIMESEEEEELREALEELREAQESEWKR  220 (237)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   999999999988776444

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=6.8e-05  Score=80.00  Aligned_cols=194  Identities=18%  Similarity=0.217  Sum_probs=129.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      -+|++.+..+|.|+.+|.|.+.+- +-+.++.|+.+...+....+..+                  .        ..+++
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~------------------~--------~~~L~   81 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN------------------K--------QNFLF   81 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc------------------C--------ceEEE
Confidence            478999999999999999888774 34444666654443211111111                  0        34566


Q ss_pred             EEECCCc-----EEEEEcCCC------eEE--EEec----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEE--CCC--C
Q 007234           91 LGTGGGD-----VLALAVSAG------QLK--WRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLT--G  149 (612)
Q Consensus        91 ~gs~~g~-----I~vwd~~~~------~~~--~~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd--~~~--~  149 (612)
                      +...|+.     ++||+++.-      +++  .++.    .....++.+++.+.+-+.+++|-.||.|.++.  +..  |
T Consensus        82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence            5555443     899998643      222  1111    12356789999999988899999999999884  222  2


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCE-EEEeC-CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKM-LATAA-GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~-l~~~~-g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      ...........+|+.+.+..+++. ++++. ..|.+|.+....+ ...+..|...+.|-.|++....+++++  +..+.+
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~f  239 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYF  239 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEE
Confidence            222222334569999999998887 34444 8999999984442 455778888899999987666566654  567999


Q ss_pred             EEcCCCc
Q 007234          227 WRTDGVK  233 (612)
Q Consensus       227 wd~~~~~  233 (612)
                      |+....+
T Consensus       240 Y~sd~~~  246 (933)
T KOG2114|consen  240 YDSDGRG  246 (933)
T ss_pred             EcCCCcc
Confidence            9987544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.44  E-value=6.4e-05  Score=85.67  Aligned_cols=187  Identities=12%  Similarity=0.209  Sum_probs=121.8

Q ss_pred             CcEEEEEECCCcEEEE----EcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE--------
Q 007234           86 SSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG--------  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vw----d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~--------  153 (612)
                      ...++++..+|.|.++    +......  .....-...|.+++||||+..|+.+..++++.+.+- +.+++.        
T Consensus        87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   87 SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD  163 (928)
T ss_pred             CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence            5679999999999988    5554443  222234578999999999999999988888877642 111111        


Q ss_pred             ----------------EEec------------------------CCCCeeEEEECCCCCEEEEeC-----C---eEEEEE
Q 007234          154 ----------------KFRA------------------------STKGISCMAVSSDGKMLATAA-----G---QLKTFN  185 (612)
Q Consensus       154 ----------------~~~~------------------------~~~~v~~l~~spdg~~l~~~~-----g---~i~lwd  185 (612)
                                      .|++                        ....-..|+|..||.++|+.+     |   .++||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                            1111                        112345788999999999875     3   789998


Q ss_pred             cCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC
Q 007234          186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (612)
Q Consensus       186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (612)
                      -+ |.....-..-.+--.+++|.|.|++++++-...  ..|.+|.-+.-+..  ............+..+.|+     .|
T Consensus       244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~~~~~~~v~~l~Wn-----~d  315 (928)
T PF04762_consen  244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--EFTLRFDPEEEKVIELAWN-----SD  315 (928)
T ss_pred             CC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--eEecCCCCCCceeeEEEEC-----CC
Confidence            54 665444333334445689999999988875322  34556654443322  1222222344555667787     99


Q ss_pred             CcEEEEEecCCcEEEEECCCc
Q 007234          264 GLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       264 ~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      +..|+....|. |.+|-..+.
T Consensus       316 s~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCEEEEEecCC-ceEEEeeCC
Confidence            99999987665 999976554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.43  E-value=0.00043  Score=64.01  Aligned_cols=142  Identities=22%  Similarity=0.285  Sum_probs=99.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      ..+++.|+..+.+.--|..+|..+.+--                   +.....+-+..-          ++++++|+.+|
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------------lg~RiE~sa~vv----------gdfVV~GCy~g   73 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------------LGVRIECSAIVV----------GDFVVLGCYSG   73 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-------------------hCceeeeeeEEE----------CCEEEEEEccC
Confidence            4577788889999999999999876531                   011111111111          78899999999


Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC-CCCEEE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA  175 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~  175 (612)
                      .+++.+.++|...+.+.....-.+.. ...+++..++.++.|++.+..|.++..++.+.+....-..+-+..| ++.+.+
T Consensus        74 ~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen   74 GLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             cEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence            99999999998887775333333333 3466899999999999999999999999998877666556666677 555555


Q ss_pred             EeC-CeEEEEEcCC
Q 007234          176 TAA-GQLKTFNCSD  188 (612)
Q Consensus       176 ~~~-g~i~lwd~~~  188 (612)
                      +.. |.+.--..++
T Consensus       153 a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  153 AITAGAVLAVTKNP  166 (354)
T ss_pred             EeccceEEEEccCC
Confidence            444 6554444443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=1.8e-06  Score=82.28  Aligned_cols=156  Identities=10%  Similarity=0.100  Sum_probs=110.9

Q ss_pred             EEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           11 TSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        11 ~~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      |+||=+  |-. ++.+.+-.|-+-|+++|... .|. ..+.|....|...                           +.+
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s---------------------------~nL  266 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGS---------------------------DNL  266 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhccc---------------------------CCe
Confidence            356543  334 34445566778888877543 333 3444444444443                           788


Q ss_pred             EEEEECCCcEEEEEcCCC-----eEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCce---eEEEecCC
Q 007234           89 LVLGTGGGDVLALAVSAG-----QLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSL---LGKFRAST  159 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~  159 (612)
                      +..|+.+|.|.++|++.+     .+...+  -|.+.|+++..-. ++++|++.+.+|+|++||++--++   +..+.+|.
T Consensus       267 v~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv  344 (425)
T KOG2695|consen  267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV  344 (425)
T ss_pred             eEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence            999999999999999865     344444  3899999998776 788999999999999999987666   88888887


Q ss_pred             CCeeE--EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC
Q 007234          160 KGISC--MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH  198 (612)
Q Consensus       160 ~~v~~--l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h  198 (612)
                      ..-.-  +-+.+....+++++  .-.++|.++.+..+.+++-.
T Consensus       345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            63333  33456666666665  68899999999998887643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=8.4e-07  Score=84.45  Aligned_cols=141  Identities=15%  Similarity=0.280  Sum_probs=107.6

Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-----ceeEEEecCCCCeeE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC  164 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~  164 (612)
                      ++.+.+-.|.+-|+++|-.. .+ . ..+.|.++.|...++.++.|..+|.|...|++.+     .+...+. |...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf-~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SF-Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccccc-cc-c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            44555666888888877653 22 2 5678999999998999999999999999999864     3444444 7788888


Q ss_pred             EEECC-CCCEEEEeC--CeEEEEEcCCCee---EEEEecCCCCEEEE--EEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       165 l~~sp-dg~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l--~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +..-. ++.+|.+.+  |+|++||.+--++   +.++.||...-.-+  ...+....++++| +|...++|.++.+...
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence            88765 666666666  9999999987776   89999997654433  3346666788887 7999999999998755

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.41  E-value=4.4e-06  Score=89.12  Aligned_cols=179  Identities=16%  Similarity=0.198  Sum_probs=128.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      ++..+.-|+-...+..+|..+++..+......+                  .++.+.-           +++++.+|...
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~------------------~v~imR~-----------Nnr~lf~G~t~  196 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS------------------GVTIMRY-----------NNRNLFCGDTR  196 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCC------------------ceEEEEe-----------cCcEEEeeccc
Confidence            345566777777788889988877765532211                  1222221           17889999999


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---------CCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      |+|.+-|+.+.+.++++ .+|++.|.++..  .|+.|++||.         |.-|++||++..+.+.-+..+.++ .-+.
T Consensus       197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr  272 (1118)
T KOG1275|consen  197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR  272 (1118)
T ss_pred             ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence            99999999999999888 689999998877  5889999974         556899999988777666655443 5677


Q ss_pred             ECCC--CCEEEEeC-CeEEEEEc---CCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          167 VSSD--GKMLATAA-GQLKTFNC---SDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       167 ~spd--g~~l~~~~-g~i~lwd~---~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      |+|.  .+.+++.+ |...+.|.   .+. ..+..+....+.+..++++++|..++.+- .+|.|.+|.
T Consensus       273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa  340 (1118)
T KOG1275|consen  273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA  340 (1118)
T ss_pred             hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence            8874  33333333 99999883   332 12333333445589999999999999886 799999997

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.40  E-value=1.3e-06  Score=57.65  Aligned_cols=39  Identities=23%  Similarity=0.604  Sum_probs=36.2

Q ss_pred             CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      ++++.++.+|.++|.+++|+|++.+|++++ .|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            367889999999999999999999999998 799999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.9e-05  Score=76.96  Aligned_cols=239  Identities=14%  Similarity=0.088  Sum_probs=136.8

Q ss_pred             CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ...||++  +|||..+ ++..++.+..|+|.|+++..++..+..+ ..+.                  +++|.-.+    
T Consensus       193 g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~w------------------SC~wDlde----  247 (463)
T KOG1645|consen  193 GSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIW------------------SCCWDLDE----  247 (463)
T ss_pred             chhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-CCce------------------eeeeccCC----
Confidence            4578888  9999888 7788899999999999999988877644 3333                  34454443    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEecc--CCCCCeEEEEEec------CCCEEEEEecCCcEEEEECCC--Cce
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFAT------HGSCIYSAGADGMVCEIDPLT--GSL  151 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~sp------~~~~l~s~s~dg~v~iwd~~~--~~~  151 (612)
                          .++|..|..+|.|.|||++..+-....+.  -...+|..++.-+      .|..++.++.+  ...|++.-  +..
T Consensus       248 ----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  248 ----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             ----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence                67899999999999999987654322111  1234455544332      23333333332  45565432  222


Q ss_pred             eEEEec-CCCCeeEEEECCCCCEEEEeC--C----eEE---E-EEcCCCeeEEEE-ecCC-CCE------EEEEEeeCCc
Q 007234          152 LGKFRA-STKGISCMAVSSDGKMLATAA--G----QLK---T-FNCSDHKKMQKF-SGHP-GAV------RFMTFSDNGK  212 (612)
Q Consensus       152 ~~~~~~-~~~~v~~l~~spdg~~l~~~~--g----~i~---l-wd~~~~~~~~~~-~~h~-~~v------~~l~~sp~~~  212 (612)
                      ...++. ..+.+.++++++..++++...  +    +++   . -|-.+|.++..- .+|. ++-      ..+.-.++.+
T Consensus       322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn  401 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN  401 (463)
T ss_pred             CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence            222221 345677777777666665543  1    111   1 123344333222 2221 111      1122245667


Q ss_pred             EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       213 ~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      +++..+...+.+.+||..+.+..     ..+.-...+.+...+.    ...+.+|++-+ |..++||..+
T Consensus       402 ~iv~~gd~tn~lil~D~~s~evv-----Q~l~~~epv~Dicp~~----~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  402 YIVVVGDSTNELILQDPHSFEVV-----QTLALSEPVLDICPND----TNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             EEEEecCCcceeEEeccchhhee-----eecccCcceeecceee----cCCcchhhhee-cceEEEEecC
Confidence            77776656678999999988643     4444444444444443    13345555555 4578887643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.35  E-value=1.4e-06  Score=57.44  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234          107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (612)
Q Consensus       107 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd  145 (612)
                      +++..+ .+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            344444 68999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.30  E-value=0.00063  Score=69.85  Aligned_cols=304  Identities=12%  Similarity=0.091  Sum_probs=146.7

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        14 spdg~~las~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      |||+++++...         ..+.+.|||+.+++....... .                  .......|.|.        
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~------------------~~~~~~~~sP~--------   53 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P------------------PKLQDAKWSPD--------   53 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E------------------TTBSEEEE-SS--------
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c------------------cccccceeecC--------
Confidence            78999887632         246789999999876653321 1                  22334445544        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCC----------------CCCeEEEEEecCCCEEEEEecC-CcEEEEECC
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAGAD-GMVCEIDPL  147 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h----------------~~~V~~l~~sp~~~~l~s~s~d-g~v~iwd~~  147 (612)
                       ++.++... +++|.+++..++...+-...+-                -+.-.++.|||||++|+....| ..|+.+.+.
T Consensus        54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~  131 (353)
T PF00930_consen   54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP  131 (353)
T ss_dssp             -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred             -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence             55566554 5789999988886553332330                1123568899999998877543 334443321


Q ss_pred             CCceeEEEecCC---CCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEE-EE----ecCCCCEEEEEEeeCCcEE-EEEE
Q 007234          148 TGSLLGKFRAST---KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KF----SGHPGAVRFMTFSDNGKYV-LSSA  218 (612)
Q Consensus       148 ~~~~~~~~~~~~---~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~-~~----~~h~~~v~~l~~sp~~~~l-~s~s  218 (612)
                      .      +....   ..+..+.+-.-|.--  ..-.+.++|+.+++... ..    ..-...+..+.|.+++..+ +.-.
T Consensus       132 ~------~~~~~~~yp~~~~~~YPk~G~~n--p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~  203 (353)
T PF00930_consen  132 D------YSPPDSQYPEVESIRYPKAGDPN--PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL  203 (353)
T ss_dssp             E------ESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred             c------cCCccccCCcccccccCCCCCcC--CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence            0      11111   123333332112111  00267888998886532 11    1334568899999999833 3332


Q ss_pred             cCCC---eEEEEEcCCCccccceeeEeecCCcee--E-EeEEecCCccCCCCcEEEEEecCCc--EEEEECCCcceeccc
Q 007234          219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF--M-DCRCIDNGGVDDAGLYVLAISETGV--CYIWYGQNIEELRNT  290 (612)
Q Consensus       219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~t~s~dg~--i~iwd~~~~~~~~~~  290 (612)
                      ..+.   .+.++|..++...   .+........+  . ....+.    ..++.++.....||.  |.+++...+... .+
T Consensus       204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~l  275 (353)
T PF00930_consen  204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKPR-QL  275 (353)
T ss_dssp             ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEEE-ES
T ss_pred             ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEccccccee-cc
Confidence            2222   4667777776543   22222222111  1 112221    144455666667884  555566655422 22


Q ss_pred             CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc
Q 007234          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (612)
Q Consensus       291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s  369 (612)
                      ......+.....+.++++.   ..++|..++   ....++...... .....+.++..........|||||++++.+.|
T Consensus       276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            2222222222223333331   333333322   223333333322 12333444444433358999999999855554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.30  E-value=0.00079  Score=63.49  Aligned_cols=168  Identities=14%  Similarity=0.169  Sum_probs=105.3

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC-------CCCeeEEEECCC-------CCEEEEeC-CeEE
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVSSD-------GKMLATAA-GQLK  182 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~spd-------g~~l~~~~-g~i~  182 (612)
                      -.-+-++||||+..|+.+...|+|+++|+.. ..+..+...       ...|..+.|-+-       .++|+... |.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            3457899999999999999999999999864 333343321       235666766542       24455544 7776


Q ss_pred             EEEcCC--C---eeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCC----------eEEEEEcCCCccccc-------
Q 007234          183 TFNCSD--H---KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGER----------YIALWRTDGVKKQSA-------  237 (612)
Q Consensus       183 lwd~~~--~---~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~----------~i~vwd~~~~~~~~~-------  237 (612)
                      -|-+..  .   +....|.   .+...|.++.++|..+.|+.+|....          -+..|.+-.+.+--.       
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            665532  2   2233332   24678999999999998888774432          256776644432100       


Q ss_pred             --------eeeEee---------cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          238 --------SCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       238 --------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                              ...+.+         ......+--+..     +|||..|++...+|.|.+|++.+.++.+.-+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEE-----CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                    000000         011112222333     4999999999999999999999887765433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.28  E-value=0.00024  Score=76.17  Aligned_cols=234  Identities=18%  Similarity=0.243  Sum_probs=137.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccc-cccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTS-LYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~--   94 (612)
                      ..++.++.+|.|.-+|.++|+.+..+.......... ..+.+            ..+            +..+++++.  
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP------------~v~------------~~~v~vg~~~~  166 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP------------TIV------------KKLVIIGSSGA  166 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC------------EEE------------CCEEEEecccc
Confidence            567778889999999999999998875322110000 00000            000            344556543  


Q ss_pred             -------CCcEEEEEcCCCeEEEEeccCCCC-------------------Ce-EEEEEecCCCEEEEEecCC--------
Q 007234           95 -------GGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG--------  139 (612)
Q Consensus        95 -------~g~I~vwd~~~~~~~~~~~~~h~~-------------------~V-~~l~~sp~~~~l~s~s~dg--------  139 (612)
                             +|.+..+|..+|+.++++...+..                   .| ....+.+.+..++.++.++        
T Consensus       167 ~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~  246 (488)
T cd00216         167 EFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGR  246 (488)
T ss_pred             ccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCc
Confidence                   577999999999998877432211                   01 1234455566777777665        


Q ss_pred             ----------cEEEEECCCCceeEEEecCCCCe------eEEEEC----CCCC---EEEEeC--CeEEEEEcCCCeeEEE
Q 007234          140 ----------MVCEIDPLTGSLLGKFRASTKGI------SCMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       140 ----------~v~iwd~~~~~~~~~~~~~~~~v------~~l~~s----pdg~---~l~~~~--g~i~lwd~~~~~~~~~  194 (612)
                                .|..+|..+|+.+-.++......      ....+.    -+|.   .+++++  |.++.+|.++|+.+.+
T Consensus       247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence                      79999999999887765322111      111111    1343   455565  8999999999998776


Q ss_pred             EecCCCCEEEEEEeeCCcEEEEEE-----------------cCCCeEEEEEcCCCccccceeeEeecCC---------ce
Q 007234          195 FSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEHP---------AV  248 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp~~~~l~s~s-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~  248 (612)
                      .....   ..+..+| + .++..+                 ..++.+...|+.+++..     ......         ..
T Consensus       327 ~~~~~---~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~-----W~~~~~~~~~~~~~g~~  396 (488)
T cd00216         327 RPEVE---QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV-----WEKREGTIRDSWNIGFP  396 (488)
T ss_pred             eEeec---cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-----eEeeCCccccccccCCc
Confidence            54211   1123333 2 222211                 13567777888877644     221111         00


Q ss_pred             eE-EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          249 FM-DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       249 ~~-~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      .. ....       -.+..|++++.||.|+.+|.++|+.+...+.
T Consensus       397 ~~~~~~~-------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         397 HWGGSLA-------TAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             ccCcceE-------ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            00 0111       2457888889999999999999999876553

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.27  E-value=0.0002  Score=74.66  Aligned_cols=216  Identities=11%  Similarity=0.116  Sum_probs=116.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .+.++|+|++++.++ ||...|+.....+....                       .......|.+.          ..+
T Consensus        37 ~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----------------------G~g~~~vw~~~----------n~y   82 (443)
T PF04053_consen   37 SLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----------------------GSGLSFVWSSR----------NRY   82 (443)
T ss_dssp             EEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----------------------EE-SEEEE-TS----------SEE
T ss_pred             eEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----------------------CceeEEEEecC----------ccE
Confidence            349999999998855 78888888544443321                       13345677762          236


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp  169 (612)
                      ++-..+++|.|+.--.+.....+...  ..+..+-.   |..|...+. +.|.+||+.+++.++.+...  +|..+.|++
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~  154 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSD  154 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred             EEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence            77777888999633222221122211  23444433   777766654 48999999999999998853  489999999


Q ss_pred             CCCEEEEeC-CeEEEEEcCCC-----------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          170 DGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       170 dg~~l~~~~-g~i~lwd~~~~-----------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      +|++++..+ ..+++++....           ..+..+..-...|.+..|..+  .++.+. .. .++.  +-.|+..  
T Consensus       155 ~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~~Ge~~--  226 (443)
T PF04053_consen  155 DGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LVNGETG--  226 (443)
T ss_dssp             TSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEE--
T ss_pred             CCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EEcCCcc--
Confidence            999999888 88888875433           123333332567888899876  444443 23 6776  4455422  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                       .+..++.+   +-.+...     +..+.+.....|+.+..+.+...
T Consensus       227 -~i~~ld~~---~yllgy~-----~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  227 -IIAHLDKP---LYLLGYL-----PKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             -EEEE-SS-----EEEEEE-----TTTTEEEEE-TT--EEEEE--HH
T ss_pred             -eEEEcCCc---eEEEEEE-----ccCCEEEEEECCCCEEEEEECHH
Confidence             23333333   3333343     55577888888888888876544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.00011  Score=78.07  Aligned_cols=173  Identities=12%  Similarity=0.164  Sum_probs=123.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +++||.|..+|.|++++.. |.....+ .|+..                           +.      .|.++++|+.||
T Consensus        49 ~~~~~~GtH~g~v~~~~~~-~~~~~~~-~~s~~---------------------------~~------~Gey~asCS~DG   93 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ-GNPKTNF-DHSSS---------------------------IL------EGEYVASCSDDG   93 (846)
T ss_pred             cceeeeccccceEEEEecC-Ccccccc-ccccc---------------------------cc------CCceEEEecCCC
Confidence            6789999999999999875 3332222 12110                           11      189999999999


Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecC-----CCEEEEEecCCcEEEEECC--CCceeEEEecCCCCeeEEEECC
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSS  169 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~sp  169 (612)
                      +|.|..+-+++...++.  ...++.+++++|+     .+.+++||.-| +.++.-.  ..+.-..+....++|.++.|. 
T Consensus        94 kv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~-  169 (846)
T KOG2066|consen   94 KVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR-  169 (846)
T ss_pred             cEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence            99999998888765542  4578999999998     46799999888 7776521  111111355567899999997 


Q ss_pred             CCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCE------EEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAV------RFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       170 dg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v------~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                       |.++|-++ --|++||+.+++.+..++.....+      ..+.|.++.+ |+.|  +..+|+|..++..
T Consensus       170 -g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  170 -GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKICSIKKR  235 (846)
T ss_pred             -CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEEEEecc
Confidence             88999888 679999999988877665333322      3467877665 4544  6678999998843

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.24  E-value=2.4e-05  Score=83.67  Aligned_cols=183  Identities=16%  Similarity=0.221  Sum_probs=132.9

Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      ++..++.|+-...+..+|+++.+..+.... ..+.|+-++.  +++.+++|...|+|.+-|.++.+.++++.+|.+.+..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            467788888888899999999887755422 2334666655  6788999999999999999999999999999998877


Q ss_pred             EEECCCCCEEEEeC--C---------eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCC
Q 007234          165 MAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       165 l~~spdg~~l~~~~--g---------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      +..  .|+.|++++  +         -|+|||+++.+.+.-+.-+.++ .-+.|+|.= ..+++++ ..|...+-|..+.
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL  298 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence            666  488888876  1         3889999988776666555555 556788753 3455555 5788888884432


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ..... .++-.......+...+++     ++|..++.|..+|.|.+|.
T Consensus       299 sNP~~-~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  299 SNPPA-GVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCcc-ceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence            21111 122222222335666676     8999999999999999997

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=6.7e-05  Score=79.51  Aligned_cols=175  Identities=15%  Similarity=0.153  Sum_probs=117.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +++++.|+-+|.|++++....- . +. ..|+..      .-+|.+++|||.||+|.+--+-+.+...++. ...++.++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi  118 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI  118 (846)
T ss_pred             cceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence            7789999999999999987553 2 22 235443      5589999999999999999998888877766 45689999


Q ss_pred             EECCC-----CCEEEEeC--CeEEEEEcCC--CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          166 AVSSD-----GKMLATAA--GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       166 ~~spd-----g~~l~~~~--g~i~lwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      +++|+     .+.+++|+  | +.++.-+-  .+.-..+....++|.++.|.  |.+++-+. ++| |+|||+.+.+...
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~G-v~vyd~~~~~~l~  193 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDG-VKVYDTPTRQRLT  193 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCC-cEEEeccccceee
Confidence            99997     57788888  6 77765321  11111355667899999997  77888875 455 8999998876441


Q ss_pred             cee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      ... -.....+........|.      +...|+.| ...+|++..++
T Consensus       194 ~i~~p~~~~R~e~fpphl~W~------~~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  194 NIPPPSQSVRPELFPPHLHWQ------DEDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             ccCCCCCCCCcccCCCceEec------CCCeEEEe-cCCeEEEEEEe
Confidence            000 00111222333334453      33445544 33478888776

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.22  E-value=5.2e-06  Score=86.47  Aligned_cols=200  Identities=21%  Similarity=0.268  Sum_probs=130.6

Q ss_pred             CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      ++.+|.++  .|.|.. ..+|+++-|-.+..||+++-.. +..+...                  ....+.+.|.-.++.
T Consensus       113 hsraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w------------------~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen  113 HSRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW------------------RSAASQVKWNYKDPN  172 (1081)
T ss_pred             Cccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeecc------------------cccCceeeecccCcc
Confidence            35567666  888865 5789999999999999987542 2222211                  123445677666543


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-ec
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RA  157 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~  157 (612)
                               +.+.+....|.+||.+.|.......++|...|+.+.|+. -...+.+++.|++|+.||.......... ..
T Consensus       173 ---------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt  243 (1081)
T KOG0309|consen  173 ---------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT  243 (1081)
T ss_pred             ---------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence                     455555566999999988765555577999999999975 2335889999999999998654322221 11


Q ss_pred             CCCCeeEEEECCCCCEEEE----eCCeEE---------EEEcCC-CeeEEEEecCCCCEEEEEEeeC--------C--cE
Q 007234          158 STKGISCMAVSSDGKMLAT----AAGQLK---------TFNCSD-HKKMQKFSGHPGAVRFMTFSDN--------G--KY  213 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~----~~g~i~---------lwd~~~-~~~~~~~~~h~~~v~~l~~sp~--------~--~~  213 (612)
                      ...++..-++-|-|+-...    |+..+.         .|+..+ .+++..|.||...|..+.|-..        .  -.
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence            2346666677775543322    112333         344333 3678999999998877666432        1  14


Q ss_pred             EEEEEcCCCeEEEEEcCC
Q 007234          214 VLSSAVGERYIALWRTDG  231 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~  231 (612)
                      |++=+ .|.++++|-+..
T Consensus       324 LVTWS-kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  324 LVTWS-KDQTLRLWPIDS  340 (1081)
T ss_pred             EEEee-cCCceEeeeccH
Confidence            66665 899999998754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=7.3e-06  Score=80.84  Aligned_cols=201  Identities=10%  Similarity=0.052  Sum_probs=140.4

Q ss_pred             CcEEEEEECCCcEEEEEcCC--CeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEecC--CC
Q 007234           86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAS--TK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~--~~  160 (612)
                      .++++.++.||.++.|-...  |.........|-+.|.+++.+.++-.+.|.+. |..++++|+.+...+.-++..  .+
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg   99 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG   99 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence            57899999999999998765  33333344678889999999999998999777 999999999877655443321  22


Q ss_pred             CeeEEEECCC-C-CEEEEeC---CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC-
Q 007234          161 GISCMAVSSD-G-KMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV-  232 (612)
Q Consensus       161 ~v~~l~~spd-g-~~l~~~~---g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~-  232 (612)
                      .+ +...+|. - ..++++.   |.+.++|-...-  ....-.-|.++|..+.++|.+..+++.. ..|.|.-|..... 
T Consensus       100 ~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~  177 (558)
T KOG0882|consen  100 FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF  177 (558)
T ss_pred             ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence            21 2222221 1 2444444   899999976543  2333356899999999999999888875 6899999998731 


Q ss_pred             ccccceeeEee---------cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          233 KKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      +.......+.+         .-......+..|+     |+|..+.+-+.|..|++++.++|+.++.+...
T Consensus       178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            11101111222         2223445667776     99999999999999999999999988766544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.18  E-value=0.00084  Score=62.16  Aligned_cols=187  Identities=14%  Similarity=0.145  Sum_probs=120.1

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      ..++++|+..|.+.--|..+|..+++..-+  .++.+-+.- -|++++.|...|.+++.+.++|.+...+.....-=...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            578999999999999999999998876533  344433322 36789999999999999999998888877544322344


Q ss_pred             EECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       166 ~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      ...+++..+..|+  ++.+..|.++..++.+.+...+.-.+-+..| ++...++.  ..|.+.--..+.....   ....
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~--t~G~vlavt~~~~~~~---~~w~  174 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI--TAGAVLAVTKNPYSST---EFWA  174 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe--ccceEEEEccCCCCcc---eehh
Confidence            5678999999998  8999999999998887764444444455666 45443333  3454443333332111   1111


Q ss_pred             ecCCceeEEe-EEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      ..-...+... .+.        +..+..++.||.+.-++ +.|+++..
T Consensus       175 ~~~~~PiF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvwr  213 (354)
T KOG4649|consen  175 ATRFGPIFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVWR  213 (354)
T ss_pred             hhcCCccccCceec--------cceEEEEEeccEEEEEc-CCCcEEEe
Confidence            1111111111 111        24566667788888777 66666653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.17  E-value=0.00038  Score=73.71  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=74.1

Q ss_pred             EecCCCEEEEEecCCcEEEEECCC-----CceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee-----
Q 007234          125 FATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK-----  191 (612)
Q Consensus       125 ~sp~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~-----  191 (612)
                      +.++|++...  .++.|.+.|..+     .+.+..+.. ......+.++|||+++++++   +++.++|+.+.+.     
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            3457777665  367899999988     355555554 44568999999999999988   7999999987552     


Q ss_pred             -------EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          192 -------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       192 -------~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                             +.+..--.+| ...+|.++|....+. .-|..|-.|++.+
T Consensus       361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytsl-f~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTL-FLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeeccCCCc-ceEEECCCCCEEEeE-eecceeEEEehHH
Confidence                   3444332333 456899998755554 4789999999876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=8.1e-05  Score=77.55  Aligned_cols=188  Identities=11%  Similarity=0.102  Sum_probs=126.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.+.|..+  .|+.+.+.|-++..+|.|.||-+-.|.-..++-                .......+.++.|...     
T Consensus        70 H~~sV~vv--TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi----------------NnRnKSvV~SmsWn~d-----  126 (1189)
T KOG2041|consen   70 HNASVMVV--TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI----------------NNRNKSVVVSMSWNLD-----  126 (1189)
T ss_pred             CcceEEEE--EeccccccccccCCCceEEEEeeecccHHHHHh----------------hCcCccEEEEEEEcCC-----
Confidence            35667555  999999999999899999999988776544332                1222445667888776     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-------ceeEE
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SLLGK  154 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-------~~~~~  154 (612)
                          |..|.+...||.|.|=.+..++.-.+-+++  .....+.|++|.+.++.+-.+|.+.++|.+..       .+...
T Consensus       127 ----G~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn  200 (1189)
T KOG2041|consen  127 ----GTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN  200 (1189)
T ss_pred             ----CcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe
Confidence                778999999999998888776554332222  23457889999998888888999999997532       11111


Q ss_pred             ----EecCCCCeeEEEEC--------CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          155 ----FRASTKGISCMAVS--------SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       155 ----~~~~~~~v~~l~~s--------pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                          +......+..+.|.        ||...++++-  |.+.+..-.+......+. ..-.+....|+++|..|+.+|.
T Consensus       201 ~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  201 GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             eeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccC
Confidence                11122235566664        5777777776  777776444332222222 2256788899999999999873

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=6.3e-05  Score=74.42  Aligned_cols=252  Identities=13%  Similarity=0.098  Sum_probs=156.8

Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC--C-cEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--G-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus         1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      ||...|..+   |-.-.+++.+++-||.++.|--..  | +.+..+..|.+.+.+++.+.+                   
T Consensus         7 mhrd~i~hv---~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-------------------   64 (558)
T KOG0882|consen    7 MHRDVITHV---FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-------------------   64 (558)
T ss_pred             cccceeeeE---eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-------------------
Confidence            444555433   445567999999999999997532  2 234444445554444444444                   


Q ss_pred             cccccccCCcEEEEEEC-CCcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCC-C-EEEE-EecCCcEEEEECCCCc-e
Q 007234           78 RKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHG-S-CIYS-AGADGMVCEIDPLTGS-L  151 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~-~l~s-~s~dg~v~iwd~~~~~-~  151 (612)
                              +.++.+++. |..++++|+..-....-+.. .-.+.+. +..+|.. . .++. .-.++.+.++|-...- +
T Consensus        65 --------g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q  135 (558)
T KOG0882|consen   65 --------GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ  135 (558)
T ss_pred             --------ceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence                    667777666 89999999987554321111 1112221 1222221 1 2222 2367899999965443 2


Q ss_pred             eEE-EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC------Cee---------EEEEecCCCCEEEEEEeeCCcE
Q 007234          152 LGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD------HKK---------MQKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       152 ~~~-~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~------~~~---------~~~~~~h~~~v~~l~~sp~~~~  213 (612)
                      ... -.-|..+|.++.+.|-+..+++..  |-|.-|....      .+.         +..+........++.|+|+|..
T Consensus       136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q  215 (558)
T KOG0882|consen  136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ  215 (558)
T ss_pred             cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence            333 344788999999999999999988  8999998763      111         1112223456788999999999


Q ss_pred             EEEEEcCCCeEEEEEcCCCccccc------------eeeEee----------------cCCceeEEeEEecCCccCCCCc
Q 007234          214 VLSSAVGERYIALWRTDGVKKQSA------------SCVLAM----------------EHPAVFMDCRCIDNGGVDDAGL  265 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~------------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  265 (612)
                      +.+.+ .|+.|+++++.+++....            ...+.+                .+......-+.|.     ..|+
T Consensus       216 istl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd-----es~~  289 (558)
T KOG0882|consen  216 ISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD-----ESGN  289 (558)
T ss_pred             ccccC-cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc-----CCCC
Confidence            99987 799999999988864310            000000                0112222334454     7889


Q ss_pred             EEEEEecCCcEEEEECCCcceeccc
Q 007234          266 YVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       266 ~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      +|+-++.=| |++.++.+++..+..
T Consensus       290 flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  290 FLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             EEEeeccee-EEEEEeecCeEEEEe
Confidence            999888754 788898888776643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.02  E-value=0.0038  Score=67.31  Aligned_cols=151  Identities=20%  Similarity=0.260  Sum_probs=92.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---   94 (612)
                      ..++.++.|+.|.-.|..+|+.+..+............+.+            +..            +..+++++.   
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v~------------~g~Vivg~~~~~  176 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LVV------------KGKVITGISGGE  176 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EEE------------CCEEEEeecccc
Confidence            45667778999999999999998876431100000000000            000            345666653   


Q ss_pred             ---CCcEEEEEcCCCeEEEEeccCCC------------------------------CCeE-EEEEecCCCEEEEEec---
Q 007234           95 ---GGDVLALAVSAGQLKWRLSDCHP------------------------------GGVS-AISFATHGSCIYSAGA---  137 (612)
Q Consensus        95 ---~g~I~vwd~~~~~~~~~~~~~h~------------------------------~~V~-~l~~sp~~~~l~s~s~---  137 (612)
                         +|.|..+|.++|+.++++.....                              ..++ .+++.|+..+++.+..   
T Consensus       177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~  256 (527)
T TIGR03075       177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS  256 (527)
T ss_pred             cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence               57899999999999887642211                              1111 3356665666665541   


Q ss_pred             --CC-----------cEEEEECCCCceeEEEecCCCCe---------eEEEECCCCC---EEEEeC--CeEEEEEcCCCe
Q 007234          138 --DG-----------MVCEIDPLTGSLLGKFRASTKGI---------SCMAVSSDGK---MLATAA--GQLKTFNCSDHK  190 (612)
Q Consensus       138 --dg-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~l~~spdg~---~l~~~~--g~i~lwd~~~~~  190 (612)
                        ++           +|...|+++|+..-.++.....+         .-+.+..+|+   .++.+.  |.+++.|-++|+
T Consensus       257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence              12           67888999999887776533221         2223334676   566666  899999999998


Q ss_pred             eE
Q 007234          191 KM  192 (612)
Q Consensus       191 ~~  192 (612)
                      .+
T Consensus       337 ~i  338 (527)
T TIGR03075       337 LL  338 (527)
T ss_pred             ee
Confidence            76

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0069  Score=62.75  Aligned_cols=189  Identities=14%  Similarity=0.156  Sum_probs=131.6

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      ..+....++.|.+.|..+.........+.  ....++++|+++.++.+..   ++++.+.|-.+++...+......+ ..
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~  164 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG  164 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence            45555556889999988888776665444  6789999999988887765   689999999999888886554445 89


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEE-----EEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEEEcCCCcc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-----KFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK  234 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vwd~~~~~~  234 (612)
                      ++++|+|..++...   +.|.+.|.++....+     ...-+. .-..+.+.|+|.++......+  +.+...|..++..
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            99999999777665   899999987766553     122122 235688999999777665333  5788888877653


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceecc
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN  289 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~  289 (612)
                      ..  ..... ... ....+...     |+|..+.+... .+.+.+-|..+......
T Consensus       244 ~~--~~~~~-~~~-~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         244 TA--TDLPV-GSG-APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EE--ecccc-ccC-CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            31  00111 111 22334454     99999888854 47899988877766543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.00  E-value=5.3e-06  Score=88.05  Aligned_cols=127  Identities=21%  Similarity=0.250  Sum_probs=98.1

Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC-eEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIAL  226 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~-~i~v  226 (612)
                      +..++|+.+....+|++|+-+.++|++|+  |.|++|++.+|.......+|.++|+.+.-+-+|..+++++++.. -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            45566777888999999999999999998  99999999999999999999999999999999998887765555 5679


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      |++...-.        ..|.-.--.++.|+     .....-+.|+......+||++++..+.+
T Consensus      1172 W~~~s~~~--------~~Hsf~ed~~vkFs-----n~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1172 WDASSTGG--------PRHSFDEDKAVKFS-----NSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             hccccccC--------ccccccccceeehh-----hhHHHHHhcccccceEEEecccCcHHHH
Confidence            99876321        12322233456665     3334445566666899999999988765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.97  E-value=0.0017  Score=72.38  Aligned_cols=194  Identities=13%  Similarity=0.177  Sum_probs=123.3

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +++.|--+++-++.+..+|.|.+-|..+......                   |.....+.++.|.+.         ...
T Consensus        72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-------------------g~vd~GI~aaswS~D---------ee~  123 (1265)
T KOG1920|consen   72 VSVQFLADTNSICVITALGDIILVDPETLELEIV-------------------GNVDNGISAASWSPD---------EEL  123 (1265)
T ss_pred             EEEEEecccceEEEEecCCcEEEEcccccceeee-------------------eeccCceEEEeecCC---------CcE
Confidence            4557777888888888899999988877654321                   333445667777665         677


Q ss_pred             EEEEECCCcEEEEEc----CCCeEE-------------------EEec--c---------C---------CCCCeEEEEE
Q 007234           89 LVLGTGGGDVLALAV----SAGQLK-------------------WRLS--D---------C---------HPGGVSAISF  125 (612)
Q Consensus        89 l~~gs~~g~I~vwd~----~~~~~~-------------------~~~~--~---------~---------h~~~V~~l~~  125 (612)
                      ++..+..+++.+-.-    -..+.+                   .++.  .         .         -.+.=+.++|
T Consensus       124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW  203 (1265)
T KOG1920|consen  124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW  203 (1265)
T ss_pred             EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence            888888777655332    111110                   0110  0         0         0112245899


Q ss_pred             ecCCCEEEEEe----cC-CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCee----
Q 007234          126 ATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK----  191 (612)
Q Consensus       126 sp~~~~l~s~s----~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~----  191 (612)
                      -.||+++++..    .+ ..|++||-+ |..-..-....+--.+++|-|.|..+++-.     +.|.+|.- +|-.    
T Consensus       204 RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f  281 (1265)
T KOG1920|consen  204 RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEF  281 (1265)
T ss_pred             ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccc
Confidence            99999988742    23 789999966 544333222333446899999999999764     56888874 3322    


Q ss_pred             EEEEecCCCCEEEEEEeeCCcEEEE---EEcCCCeEEEEEcCCCc
Q 007234          192 MQKFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK  233 (612)
Q Consensus       192 ~~~~~~h~~~v~~l~~sp~~~~l~s---~s~~d~~i~vwd~~~~~  233 (612)
                      ...++-...+|..++|+.++..|+.   .. ....|++|-+.+-.
T Consensus       282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  282 VLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence            2223334455899999999998877   33 34459999876643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.96  E-value=0.0028  Score=67.32  Aligned_cols=176  Identities=11%  Similarity=0.108  Sum_probs=113.9

Q ss_pred             CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC----CcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234           95 GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd  170 (612)
                      .+.+.+.|..+.+..+++.-+  +....+.++|+|+++++++.+    .++...+......+..|....    ..++.++
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkd  287 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKA  287 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhC
Confidence            345788899988887777532  355778899999998888642    233333332222111221110    0134468


Q ss_pred             CCEEEEeCCeEEEEEcCC-----CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc------c-ce
Q 007234          171 GKMLATAAGQLKTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------S-AS  238 (612)
Q Consensus       171 g~~l~~~~g~i~lwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~------~-~~  238 (612)
                      |++...+++.|.+.|.++     .+.+..+. -......+.++|||+++++++..+.+|.|.|+.+.+..      . ..
T Consensus       288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence            888887778999999998     35555555 34456889999999999998877899999999875531      0 00


Q ss_pred             eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      .+....- ..-.....|.     ++|+...+...|..|..|++.+
T Consensus       367 vvaevev-GlGPLHTaFD-----g~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        367 VVAEPEL-GLGPLHTAFD-----GRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeecc-CCCcceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence            1111111 1112234455     7888777888899999999876

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.96  E-value=4.9e-05  Score=79.43  Aligned_cols=152  Identities=16%  Similarity=0.225  Sum_probs=101.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      -+++..+++++.|+.-|.+.+|+-..++....-..                +  ....++..-.+.+        ..++|
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~----------------~--~~~~~~~~~vs~~--------e~lvA   92 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE----------------G--ATGITCVRSVSSV--------EYLVA   92 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhccccc----------------C--ccceEEEEEecch--------hHhhh
Confidence            47888999999999999999999887765432110                1  1123333333333        56789


Q ss_pred             EEECCCcEEEEEcCCCeE-----EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC----ceeEEEecCCCC
Q 007234           91 LGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRASTKG  161 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~~~~  161 (612)
                      .|+.+|.|.++-++.+..     +......|...|++++|++++..+++|...|+|.+-.+.+.    -..+.+-...+.
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence            999999999998876432     22233457889999999999999999999999999887762    112223333456


Q ss_pred             eeEEEECCCCCEEEEeCCeEEEEEcCCC
Q 007234          162 ISCMAVSSDGKMLATAAGQLKTFNCSDH  189 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~g~i~lwd~~~~  189 (612)
                      |-.+.+. ++.+|++..-...+++++.+
T Consensus       173 IVQlD~~-q~~LLVStl~r~~Lc~tE~e  199 (726)
T KOG3621|consen  173 IVQLDYL-QSYLLVSTLTRCILCQTEAE  199 (726)
T ss_pred             eEEeecc-cceehHhhhhhhheeecchh
Confidence            6666554 34444443355556666544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.0018  Score=64.25  Aligned_cols=196  Identities=18%  Similarity=0.170  Sum_probs=119.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC-----CC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----~~  160 (612)
                      +.++.+--..+.|.-|+..+++...-.   +.+.+.++..-..+..|+++.  .-+.+++.+++..+..+...     ..
T Consensus        37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~  111 (307)
T COG3386          37 GALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLN  111 (307)
T ss_pred             CEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcC
Confidence            445666667778999999877553221   334455555554555666663  33667777666553333221     13


Q ss_pred             CeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      ..+.+.+.|+|.+.++..             |.++-+|. .+..++.+.++-..-+.|+||||++.|+.+-+..+.|..|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            567888999998877532             34555554 4666666666666668899999999888876556788888


Q ss_pred             EcCC--CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-cEEEEECCCcceecccCCc
Q 007234          228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-~i~iwd~~~~~~~~~~~~~  293 (612)
                      ++..  +.....................+..     .+|.+-+++..+| .|..|+.+ ++++..+.-.
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            7763  2111111112222223334444554     7777775555554 89999988 8877655544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.96  E-value=0.0097  Score=59.79  Aligned_cols=192  Identities=11%  Similarity=0.020  Sum_probs=103.7

Q ss_pred             CcEEEEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           86 SSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                      ..+|+.+..+|.  +.+.|+.+++..+ +..+-.....+..++|+++.++-......|+..|+.+.+....+......+-
T Consensus        48 ~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g  126 (386)
T PF14583_consen   48 RKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG  126 (386)
T ss_dssp             -EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred             CEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence            355666666666  8888999998874 4333223333567788888877665667899999999887766776666555


Q ss_pred             EEEE--CCCCCEEEEeC------------------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          164 CMAV--SSDGKMLATAA------------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       164 ~l~~--spdg~~l~~~~------------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      ...|  +.|+..++..-                        ..|...|+++|+....+. ....+..+.|+|....++.-
T Consensus       127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~f  205 (386)
T PF14583_consen  127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMF  205 (386)
T ss_dssp             EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEE
T ss_pred             ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEE
Confidence            5555  45677665431                        146667888887654444 45678889999977766665


Q ss_pred             Ec---CCC-eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-----CCcEEEEECCCcce
Q 007234          218 AV---GER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE  286 (612)
Q Consensus       218 s~---~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-----dg~i~iwd~~~~~~  286 (612)
                      |.   ++. .-+||-+++..... .++... .......--+|.     +||..+.--+.     +..|.-+|+.+++.
T Consensus       206 CHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  206 CHEGPWDLVDQRIWTINTDGSNV-KKVHRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             eccCCcceeceEEEEEEcCCCcc-eeeecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            42   222 24778776543221 122221 234455555666     88887766443     33566677887754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.003  Score=65.72  Aligned_cols=157  Identities=12%  Similarity=0.055  Sum_probs=100.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEe---cC-CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---C--eEEEEEc
Q 007234          116 HPGGVSAISFATHGSCIYSAG---AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---G--QLKTFNC  186 (612)
Q Consensus       116 h~~~V~~l~~sp~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g--~i~lwd~  186 (612)
                      -...+..-+|+|+++.++-.+   .. ..+.++|+.+++...... ..+.-...+|+|||+.|+...   |  .|+++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            345677788999998765443   22 459999999887665554 223334578999999998776   3  7889999


Q ss_pred             CCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE--EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234          187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL--WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (612)
Q Consensus       187 ~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (612)
                      .++.. ..+..-.+.-..-.|+|||++++..++..|.-.|  .+.+.....    ..+.......  .-.+     +|||
T Consensus       270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~----riT~~~~~~~--~p~~-----SpdG  337 (425)
T COG0823         270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT----RLTFSGGGNS--NPVW-----SPDG  337 (425)
T ss_pred             CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee----EeeccCCCCc--CccC-----CCCC
Confidence            88774 3354334444467899999999998866665444  455554422    1222221211  2333     4999


Q ss_pred             cEEEEEec-CCc--EEEEECCCcc
Q 007234          265 LYVLAISE-TGV--CYIWYGQNIE  285 (612)
Q Consensus       265 ~~l~t~s~-dg~--i~iwd~~~~~  285 (612)
                      ++++..+. +|.  |.+.|+.++.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCC
Confidence            99888875 354  5556665554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.90  E-value=0.0056  Score=65.71  Aligned_cols=195  Identities=13%  Similarity=0.217  Sum_probs=116.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC-cEEEEEECC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGTGG   95 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~gs~~   95 (612)
                      +..+..++.++.|.-.|..+|+.+..++........  ....     ....  ...+            + ..+++++.+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~--~~~~-----~~~g--~~~~------------~~~~V~v~~~~  119 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG--CCDV-----VNRG--VAYW------------DPRKVFFGTFD  119 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc--cccc-----ccCC--cEEc------------cCCeEEEecCC
Confidence            345666777899999999999988877533220000  0000     0000  0000            3 678899999


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCC----Ce-EEEEEecCCCEEEEEe---------cCCcEEEEECCCCceeEEEecCCCC
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPG----GV-SAISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~----~V-~~l~~sp~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                      |.|.-+|.++|+.++++...-..    .+ .+..+.  +..++.++         .++.+..+|..+|+.+-.++.....
T Consensus       120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~  197 (488)
T cd00216         120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD  197 (488)
T ss_pred             CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence            99999999999999887432110    01 112222  23455553         3688999999999988776542110


Q ss_pred             --------------------e-eEEEECCCCCEEEEeC--C------------------eEEEEEcCCCeeEEEEecCCC
Q 007234          162 --------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSGHPG  200 (612)
Q Consensus       162 --------------------v-~~l~~spdg~~l~~~~--g------------------~i~lwd~~~~~~~~~~~~h~~  200 (612)
                                          + .+.++.+.+..++.+.  +                  .|.-+|.++|+.+-++..-..
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~  277 (488)
T cd00216         198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH  277 (488)
T ss_pred             cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence                                1 1344555556666664  3                  699999999998877642111


Q ss_pred             CE------EEEEEe----eCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          201 AV------RFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       201 ~v------~~l~~s----p~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ..      ....+.    -++.   .++.++ .+|.+...|..+++..
T Consensus       278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~  324 (488)
T cd00216         278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI  324 (488)
T ss_pred             CCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence            11      011111    1232   355554 7899999999999855

The alignment model contains an 8-bladed beta-propeller.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.88  E-value=0.00091  Score=73.58  Aligned_cols=146  Identities=15%  Similarity=0.138  Sum_probs=98.6

Q ss_pred             CEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           18 DYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        18 ~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      ++|..- ...+.|.-.|++.|+.+.+++.+.... -..|.++                  .  +..+..+...++|-.+.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~------------------~--K~aqlt~e~tflGls~n  552 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPD------------------S--KFAQLTNEQTFLGLSDN  552 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEeccc------------------c--cccccCCCceEEEECCC
Confidence            444443 345778888999999999998665431 1111111                  0  00111145578899999


Q ss_pred             cEEEEEcCCCe--EEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-EEecCCCCeeEEEECCCC
Q 007234           97 DVLALAVSAGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDG  171 (612)
Q Consensus        97 ~I~vwd~~~~~--~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~spdg  171 (612)
                      .+..||++-..  ++..-.  .......+|++-+.+| +|++|+.+|.||+||- .|+.-. .+.+-..+|.+|..+.||
T Consensus       553 ~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG  630 (794)
T PF08553_consen  553 SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADG  630 (794)
T ss_pred             ceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCC
Confidence            99999998642  332111  1233456788777766 6999999999999994 444433 366667899999999999


Q ss_pred             CEEEEeC-CeEEEEEc
Q 007234          172 KMLATAA-GQLKTFNC  186 (612)
Q Consensus       172 ~~l~~~~-g~i~lwd~  186 (612)
                      +++++.+ ..+.+++.
T Consensus       631 kwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  631 KWILATCKTYLLLIDT  646 (794)
T ss_pred             cEEEEeecceEEEEEE
Confidence            9998887 77888775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.86  E-value=0.00011  Score=69.25  Aligned_cols=192  Identities=15%  Similarity=0.141  Sum_probs=120.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCe-EEEEe---ccCCC------------CCeEEEEEecCCC--EEEEEecCCcEEEEECC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQ-LKWRL---SDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~-~~~~~---~~~h~------------~~V~~l~~sp~~~--~l~s~s~dg~v~iwd~~  147 (612)
                      |.++++|...|.|.+|.-.... |...+   +++|.            ..|..+.|..+++  .++..+.|.+|++|.+.
T Consensus        38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy  117 (460)
T COG5170          38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY  117 (460)
T ss_pred             cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence            7889999999999999765432 21111   23343            3578888876543  46667799999999865


Q ss_pred             CCc------------------------------------------eeEEE-ecCCCCeeEEEECCCCCEEEEeC-CeEEE
Q 007234          148 TGS------------------------------------------LLGKF-RASTKGISCMAVSSDGKMLATAA-GQLKT  183 (612)
Q Consensus       148 ~~~------------------------------------------~~~~~-~~~~~~v~~l~~spdg~~l~~~~-g~i~l  183 (612)
                      ...                                          +.+.. ..|..-+.++.|..|...++++. =.|.+
T Consensus       118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL  197 (460)
T COG5170         118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL  197 (460)
T ss_pred             cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence            320                                          00011 23455678999999999999998 68999


Q ss_pred             EEcCCCee---EEEEecCC-----CCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCcccc-ceeeEee----------
Q 007234          184 FNCSDHKK---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAM----------  243 (612)
Q Consensus       184 wd~~~~~~---~~~~~~h~-----~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~----------  243 (612)
                      |++.-...   +-.++.|.     .-|++..|+|... .+..++ ..|.|++-|++....-. ....+..          
T Consensus       198 Wnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff  276 (460)
T COG5170         198 WNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF  276 (460)
T ss_pred             ccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhH
Confidence            99864322   22334443     3477889998654 333444 48999999998432110 0001111          


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ..-...++-..|+     ++|+++++-+. -++++||....
T Consensus       277 ~eivsSISD~kFs-----~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         277 EEIVSSISDFKFS-----DNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             HHHhhhhcceEEc-----CCCcEEEEecc-ceEEEEecccc
Confidence            1112234445565     99999887665 48999998654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.85  E-value=0.017  Score=57.00  Aligned_cols=193  Identities=13%  Similarity=0.183  Sum_probs=123.8

Q ss_pred             EEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ++|+||+++...-.  .-+|.|-|+..++.+.++...                      .|..-.|..        +.-+
T Consensus       101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------GC~~iyP~~--------~~~F  150 (342)
T PF06433_consen  101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------GCWLIYPSG--------NRGF  150 (342)
T ss_dssp             EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----------------------SEEEEEEEE--------TTEE
T ss_pred             EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----------------------CEEEEEecC--------CCce
Confidence            89999998876543  567999999999998887521                      133333333        4458


Q ss_pred             EEEECCCcEEEEEcC-CCeEEEE---eccCCCCCe-EEEEEecCCCEEEEEecCCcEEEEECCCCce--eEEEecC----
Q 007234           90 VLGTGGGDVLALAVS-AGQLKWR---LSDCHPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFRAS----  158 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~-~~~~~~~---~~~~h~~~V-~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~----  158 (612)
                      .+-|.||.+.-..+. .|+...+   ++..-..++ ..-.+...+..++--+.+|.|+--|+.....  ...+...    
T Consensus       151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e  230 (342)
T PF06433_consen  151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE  230 (342)
T ss_dssp             EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred             EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence            899999998888887 4554322   222222222 2334555555566678899999988865532  2222211    


Q ss_pred             ------CCCeeEEEECCCCCEEEEeC------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEc
Q 007234          159 ------TKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAV  219 (612)
Q Consensus       159 ------~~~v~~l~~spdg~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~  219 (612)
                            .+.-.-+++++....|++--            ..|.++|+.+++.+.++.. ..++.+|..+.+.+ +|++.+.
T Consensus       231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~  309 (342)
T PF06433_consen  231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA  309 (342)
T ss_dssp             HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET
T ss_pred             cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC
Confidence                  12445678887665555421            2799999999999999874 34577999998876 5555444


Q ss_pred             CCCeEEEEEcCCCccc
Q 007234          220 GERYIALWRTDGVKKQ  235 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~  235 (612)
                      .++.+.+||..+++..
T Consensus       310 ~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  310 GDGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTTEEEEEETTT--EE
T ss_pred             CCCeEEEEeCcCCcEE
Confidence            6899999999999754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.85  E-value=0.0069  Score=59.68  Aligned_cols=178  Identities=16%  Similarity=0.147  Sum_probs=112.7

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCceeEEEecCCC-----
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK-----  160 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~-----  160 (612)
                      +.+.|+|..+++.+..+..+..   -.+..+|+++.+++++          ..-.|.+||..+-.....+.-...     
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred             ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence            4699999999999887755443   3466899999988764          234699999999988776554332     


Q ss_pred             --CeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       161 --~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                        .....+++.||+++++..    .+|.|.|+..++.+.++...  .+..+--+++. -|.+.| .||.+.-..+....+
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~-~F~~lC-~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNR-GFSMLC-GDGSLLTVTLDADGK  169 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETT-EEEEEE-TTSCEEEEEETSTSS
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCC-ceEEEe-cCCceEEEEECCCCC
Confidence              223468899999999876    69999999999999888632  22333223333 455666 699999999884332


Q ss_pred             ccceeeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          235 QSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      ........+.. .........+.     ..+..++-.+.+|.|+--|+....
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~-----~~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYS-----RDGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEE-----TTTTEEEEEBTTSEEEEEEETTSS
T ss_pred             EeEeeccccCCCCcccccccceE-----CCCCeEEEEecCCEEEEEeccCCc
Confidence            21111111111 11122122222     344555558889999888865543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.83  E-value=0.00014  Score=75.03  Aligned_cols=91  Identities=18%  Similarity=0.161  Sum_probs=68.8

Q ss_pred             EEEEEcCCCeEE--EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE
Q 007234           98 VLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA  175 (612)
Q Consensus        98 I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  175 (612)
                      -.+|++..++..  ....-...+.|.+++++|+...|+.|+.||+|.+||...+...  +....-.++.++|+|+|.+++
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence            345666555422  1111246788999999999999999999999999998766332  323345678999999999999


Q ss_pred             EeC--CeEEEEEcCCCe
Q 007234          176 TAA--GQLKTFNCSDHK  190 (612)
Q Consensus       176 ~~~--g~i~lwd~~~~~  190 (612)
                      +|+  |.+.+||+.-..
T Consensus       316 V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  316 VGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCceEEEEEeecCc
Confidence            998  999999986543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.82  E-value=0.039  Score=58.09  Aligned_cols=238  Identities=12%  Similarity=0.117  Sum_probs=125.4

Q ss_pred             EEEEcCCCCEEEEE-eCCC----cEEEEECCCCcEEEEe-eccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234           10 LTSFSPALDYFAIC-SGDA----RIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus        10 ~~~fspdg~~las~-s~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..++||||+++|.+ +..|    .|+|+|+.+|+.+... .                    ......+.|...+      
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--------------------~~~~~~~~W~~d~------  181 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--------------------NPKFSSVSWSDDG------  181 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--------------------EEESEEEEECTTS------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--------------------ccccceEEEeCCC------
Confidence            35899999999966 3334    5999999999766432 1                    1122237776653      


Q ss_pred             cCCcEEEEEECCC----------cEEEEEcCCCeEE-EEeccCCC-CC-eEEEEEecCCCEEEEEec---C-CcEEEEEC
Q 007234           84 LGSSLLVLGTGGG----------DVLALAVSAGQLK-WRLSDCHP-GG-VSAISFATHGSCIYSAGA---D-GMVCEIDP  146 (612)
Q Consensus        84 ~~~~~l~~gs~~g----------~I~vwd~~~~~~~-~~~~~~h~-~~-V~~l~~sp~~~~l~s~s~---d-g~v~iwd~  146 (612)
                        ..++.+.....          .|+.|.+.++... ..+..... .. ...+..++|+++++..+.   + ..+.+.|+
T Consensus       182 --~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  182 --KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             --SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             --CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence              23344443331          2788888776432 11222222 22 678889999999765432   2 34788888


Q ss_pred             CCC----ceeEEEecCCCCee-EEEECCCCCEEEEeC-----CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeCCcE
Q 007234          147 LTG----SLLGKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       147 ~~~----~~~~~~~~~~~~v~-~l~~spdg~~l~~~~-----g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~  213 (612)
                      ..+    .....+......+. .+... .+.+++...     +.|.-.++.....   ...+..|...+.--.+...+.+
T Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  338 (414)
T PF02897_consen  260 DDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY  338 (414)
T ss_dssp             CCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred             cccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence            764    23334433333343 34343 444544443     5777788877652   3355556664444444555666


Q ss_pred             EEEEEcCCC--eEEEEEcC-CCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEE-ec--CCcEEEEECCCcce
Q 007234          214 VLSSAVGER--YIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAI-SE--TGVCYIWYGQNIEE  286 (612)
Q Consensus       214 l~s~s~~d~--~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~-s~--dg~i~iwd~~~~~~  286 (612)
                      |+..-..++  .|+++++. +....    ...+..... +......     +++. +.+.. |.  -+++..||+.+++.
T Consensus       339 Lvl~~~~~~~~~l~v~~~~~~~~~~----~~~~p~~g~-v~~~~~~-----~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  339 LVLSYRENGSSRLRVYDLDDGKESR----EIPLPEAGS-VSGVSGD-----FDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEEETTEEEEEEEETT-TEEEE----EEESSSSSE-EEEEES------TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEEEECCccEEEEEECCCCcEEe----eecCCcceE-EeccCCC-----CCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            666554455  58888888 33211    122222222 2222222     3333 33333 32  46888889888865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0026  Score=68.42  Aligned_cols=191  Identities=17%  Similarity=0.229  Sum_probs=120.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC-eEEEEEecCCCEEEEEecCC-----cEEEEECCCC------cee-
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLTG------SLL-  152 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~------~~~-  152 (612)
                      +..++.|+.+|.|.+++-.-. .+..+ .++... |+.+....+..+|++.+.|+     .+++||++.-      +++ 
T Consensus        35 ~~~vvigt~~G~V~~Ln~s~~-~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNSSFQ-LIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CceEEEeeccccEEEecccce-eeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            678999999999988874322 21222 445555 55554444446788877665     4999998632      333 


Q ss_pred             --EEEe--c--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcC--C--CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          153 --GKFR--A--STKGISCMAVSSDGKMLATAA--GQLKTFNCS--D--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       153 --~~~~--~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~--~--~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                        +.+.  .  ...++.+++++.+-+.+|+|-  |.|..+.-+  .  +....-...-..+|+.+.+..+++.++... .
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T  191 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T  191 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence              1111  1  245889999999988888886  888877421  1  111222223457899999999888622222 2


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      -..|.+|.+.... +   ......+++..+.+..++     +....+++++. ..+.+|+.+....-..
T Consensus       192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~~-e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAGS-EFLYFYDSDGRGPCFA  250 (933)
T ss_pred             cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEecC-ceEEEEcCCCcceeee
Confidence            4679999998443 2   244567788888888886     33333444443 3688998765444333

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.78  E-value=0.014  Score=58.98  Aligned_cols=180  Identities=18%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---------C-C
Q 007234           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---------G-G   96 (612)
Q Consensus        27 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---------~-g   96 (612)
                      ..|++.|..+.+.+..+.-..                 .....++.-........  ....++++|+.         . |
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~-----------------~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~G   62 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP-----------------NEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSG   62 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET-----------------TEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-E
T ss_pred             cEEEEEeCCCCeEEEEEECCC-----------------CceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCc
Confidence            358899998888777664211                 22333333322221100  01578888875         2 8


Q ss_pred             cEEEEEcCCC-----eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEE-ecCCCCeeEEEECC
Q 007234           97 DVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKF-RASTKGISCMAVSS  169 (612)
Q Consensus        97 ~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~-~~~~~~v~~l~~sp  169 (612)
                      .|.+|++...     +..........++|++++-- ++ .|+.+ ..+.|.+|++...+ ....- ......+.++... 
T Consensus        63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-  138 (321)
T PF03178_consen   63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-  138 (321)
T ss_dssp             EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred             EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence            8999999984     33222223457889999876 34 44444 45889999998777 43332 2122356666655 


Q ss_pred             CCCEEEEeC--CeEEEEEcCC-CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          170 DGKMLATAA--GQLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                       +.++++|+  ..+.++..+. +..+..+.  .....++++.|-++++.++.+. .+|.+.++....
T Consensus       139 -~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 -KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP  203 (321)
T ss_dssp             -TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred             -ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence             56888888  6676664432 33233332  2345688889987777666664 799999998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.78  E-value=5.2e-06  Score=85.40  Aligned_cols=199  Identities=10%  Similarity=0.135  Sum_probs=127.3

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +++++.-+..|...++.|..+|.|.+-..+...-. +++.                 ......+++++|.+-+       
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-----------------p~~ar~Ct~lAwneLD-------  114 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-----------------PGYARPCTSLAWNELD-------  114 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-----------------cccccccccccccccc-------
Confidence            44443334445457889999999998876543221 1111                 1225578999998876       


Q ss_pred             CCcEEEEEEC----CCcEEEEEcCCCe--E--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEE
Q 007234           85 GSSLLVLGTG----GGDVLALAVSAGQ--L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKF  155 (612)
Q Consensus        85 ~~~~l~~gs~----~g~I~vwd~~~~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~  155 (612)
                       .+.+|+|-.    +-.+.|||+.++-  +  ...+..+......+++|-.+.+.+.+|.....+.++|++.. .....+
T Consensus       115 -tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv  193 (783)
T KOG1008|consen  115 -TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV  193 (783)
T ss_pred             -HHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh
Confidence             455666643    3449999998872  1  22232223455668889888888999988889999998722 222222


Q ss_pred             ecCCCCeeEEEECC-CCCEEEEeC-CeEEEEE-cCCC-eeEEEEecCC----CCEEEEEEeeCCc-EEEEEEcCCCeEEE
Q 007234          156 RASTKGISCMAVSS-DGKMLATAA-GQLKTFN-CSDH-KKMQKFSGHP----GAVRFMTFSDNGK-YVLSSAVGERYIAL  226 (612)
Q Consensus       156 ~~~~~~v~~l~~sp-dg~~l~~~~-g~i~lwd-~~~~-~~~~~~~~h~----~~v~~l~~sp~~~-~l~s~s~~d~~i~v  226 (612)
                        ....+..+.+.| .+.++++-. |.|.+|| ...- .++..+...+    ..+..++|+|... .+++.....++|++
T Consensus       194 --nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl  271 (783)
T KOG1008|consen  194 --NTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL  271 (783)
T ss_pred             --hhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence              234567788888 788888877 9999999 3322 2233332222    2488999998654 34455545679999


Q ss_pred             EEcCC
Q 007234          227 WRTDG  231 (612)
Q Consensus       227 wd~~~  231 (612)
                      +|+..
T Consensus       272 ydi~~  276 (783)
T KOG1008|consen  272 YDICV  276 (783)
T ss_pred             ecccc
Confidence            99754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.75  E-value=0.0018  Score=71.34  Aligned_cols=142  Identities=16%  Similarity=0.317  Sum_probs=96.2

Q ss_pred             CcEEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-----CCCEEEEEecCCcEEEEECCCCc--eeEE-Ee
Q 007234           86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-FR  156 (612)
Q Consensus        86 ~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~s~dg~v~iwd~~~~~--~~~~-~~  156 (612)
                      ..+|+.-. ....|+-.|+++|+.+.........+|..++-..     +...-+.|-.++.+..||.+-..  ++.. .+
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            34444443 3466999999999999777543334466654321     12235667788899999988532  2221 11


Q ss_pred             --cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          157 --ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       157 --~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                        .....++|++-+.+|.+++... |.|++||--..+....+++-..||.+|..+.||+++++++  +..+.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence              1344788999998885544444 9999999433333445677789999999999999999886  678888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.74  E-value=0.0011  Score=68.98  Aligned_cols=179  Identities=18%  Similarity=0.227  Sum_probs=110.4

Q ss_pred             eEEEEcCCCCEEEEEeC---C-CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            9 ILTSFSPALDYFAICSG---D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         9 l~~~fspdg~~las~s~---d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +.-+|+|++..++..+.   . ..+.++|+.+++...... ..+......|+++                  .       
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD------------------G-------  249 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD------------------G-------  249 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCC------------------C-------
Confidence            44589999998775532   2 358899999887654443 1222222333333                  1       


Q ss_pred             CCcEEEEEECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CC--cEEEEECCCCceeEEEecCC
Q 007234           85 GSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        85 ~~~~l~~gs~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~  159 (612)
                       ..++++...+|.  |+++|+.++... ++.. -.+.-+.-.|+|||+.++-.+. .|  .|.+.|...+.. ..+....
T Consensus       250 -~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~  325 (425)
T COG0823         250 -SKLAFSSSRDGSPDIYLMDLDGKNLP-RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG  325 (425)
T ss_pred             -CEEEEEECCCCCccEEEEcCCCCcce-eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence             344555666776  788888887744 3422 2223346789999999776653 44  466677765554 3333333


Q ss_pred             CCeeEEEECCCCCEEEEeC---Ce--EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234          160 KGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ..-..-.|+|||++++..+   |.  |.+.|+.++...+.+. +........|.|+|+.+...+
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            3333788999999999776   44  6777776665444443 333344567888888777654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.74  E-value=0.00066  Score=70.27  Aligned_cols=79  Identities=22%  Similarity=0.371  Sum_probs=61.7

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      +.|  +||+++|+.+.|+.|+.||+|.+||...+..... +                   .....+.++|.|.       
T Consensus       260 s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~-------  310 (545)
T PF11768_consen  260 SQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD-------  310 (545)
T ss_pred             Ccc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC-------
Confidence            455  6889999999999999999999999877643321 1                   1234567888877       


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEec
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLS  113 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~  113 (612)
                        +.++++|+..|.+.+||+.-+....++.
T Consensus       311 --gai~~V~s~qGelQ~FD~ALspi~~qLl  338 (545)
T PF11768_consen  311 --GAIFVVGSEQGELQCFDMALSPIKMQLL  338 (545)
T ss_pred             --CcEEEEEcCCceEEEEEeecCccceeec
Confidence              7899999999999999998766544443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.72  E-value=8.5e-06  Score=83.87  Aligned_cols=197  Identities=12%  Similarity=0.145  Sum_probs=126.1

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEec-CCCEEEEEe----cCCc
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM  140 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~s~s----~dg~  140 (612)
                      ...|++|+-...       ..++++|..+|.|-+-.++...-. +.+..+|..++++++|++ |.+.|+.|-    .|..
T Consensus        58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            455677765542       367899999999999888764433 456678899999999998 555666652    4568


Q ss_pred             EEEEECCCC--ceeEE--Eec-CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe-eEEEEecCCCCEEEEEEee-CC
Q 007234          141 VCEIDPLTG--SLLGK--FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSD-NG  211 (612)
Q Consensus       141 v~iwd~~~~--~~~~~--~~~-~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp-~~  211 (612)
                      +.+||+.++  .+...  |.+ ......+++|-.+.+++.+|.  ..+.++|++... ....+  .+..+..+...| .+
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP  208 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence            999999876  33222  222 234667899998999999887  689999987432 22222  234567778888 67


Q ss_pred             cEEEEEEcCCCeEEEEEc-CCCccccceeeEeecCCce----eEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECC
Q 007234          212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHPAV----FMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ  282 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~  282 (612)
                      .|+++.  .|+.|-+||. .+-+..    +....+...    -+..+++.+.   ..| .+++.+ ..++|+.||+.
T Consensus       209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycPt---rtg-lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCPT---RTG-LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEeccC---Ccc-hhhhhccCcceEEEeccc
Confidence            777764  4899999993 332211    111112211    1233344421   233 445554 46799999864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.016  Score=60.04  Aligned_cols=193  Identities=12%  Similarity=0.139  Sum_probs=132.4

Q ss_pred             EEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .+++++++.. ++....++.|.+.|..+.++........ .                  ...+.+.+.         +..
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~------------------P~~~~~~~~---------~~~  129 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-G------------------PVGLAVDPD---------GKY  129 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-C------------------CceEEECCC---------CCE
Confidence            3488888874 4455556899999988877776653211 1                  222333332         445


Q ss_pred             EEEEEC---CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeE-E----EecCC
Q 007234           89 LVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K----FRAST  159 (612)
Q Consensus        89 l~~gs~---~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~-~----~~~~~  159 (612)
                      +.++..   ++.+.+.|..++........+. .+ ..+++.|+|+.++.+. .++.|.+.|.......+ .    .. ..
T Consensus       130 vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~  206 (381)
T COG3391         130 VYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VG  206 (381)
T ss_pred             EEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cC
Confidence            555554   5779999999999887754433 34 8999999999777665 78899999976665543 1    11 22


Q ss_pred             CCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      .....+.++|+|..+.+..     +.+...|..++..... ...-......+.++|+|+++.+.-...+.+.+.|..+..
T Consensus       207 ~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         207 TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            3457789999999777665     3788899888877655 222121456688999999888875556788888877765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.0013  Score=70.19  Aligned_cols=181  Identities=15%  Similarity=0.202  Sum_probs=112.0

Q ss_pred             EEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           11 TSFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        11 ~~fspdg~~las~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      .+|+|...+||.++.    .|.|.||- ++|+......                   -....++++|.|.         .
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~   71 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------E   71 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------H
Confidence            489999999998864    57788873 3455332211                   1223556888875         4


Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE--EecCC--C--
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST--K--  160 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~--~--  160 (612)
                      -.++.|-.-|.+.+|...+.+.. +....|..+|..+.||++|..++++..-|.|.+|....-..++.  +-.|.  .  
T Consensus        72 ~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   72 FVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL  150 (1416)
T ss_pred             HHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence            45777888899999998877665 44467999999999999999999999999999997653222221  11121  1  


Q ss_pred             CeeEEEECCCCCE-------EEEeC-CeEE-EEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          161 GISCMAVSSDGKM-------LATAA-GQLK-TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       161 ~v~~l~~spdg~~-------l~~~~-g~i~-lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      ...|...++++.-       -++|+ ..+- .++.+....-+... |.       -.|+|..++.++ .+|+|+--|-.
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~-~~GtVyyvdq~  220 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAG-KSGTVYYVDQN  220 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEc-CCceEEEEcCC
Confidence            2345556676432       22333 2221 22222111111111 11       147788788777 79988766643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0002  Score=70.13  Aligned_cols=150  Identities=11%  Similarity=0.138  Sum_probs=97.4

Q ss_pred             EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE-
Q 007234           98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA-  175 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-  175 (612)
                      |++.+..+-+... +..+|...|.+++|+|..+ ++..++.+.+|++.|+++.-.+..+..+ ..+++++|.-|....+ 
T Consensus       175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence            5555554444432 5577889999999999766 6888999999999999999998888876 7899999998766555 


Q ss_pred             EeC--CeEEEEEcCCCee-EEEEec--CCCCEEEEEE------eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec
Q 007234          176 TAA--GQLKTFNCSDHKK-MQKFSG--HPGAVRFMTF------SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (612)
Q Consensus       176 ~~~--g~i~lwd~~~~~~-~~~~~~--h~~~v~~l~~------sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (612)
                      +|.  |.|.+||++..+- +..+.+  ...+|..++.      .+.|.+++.+. .+  ...|.+...... ..++..++
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~--l~f~ei~~s~~~-~p~vlele  328 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TV--LQFYEIVFSAEC-LPCVLELE  328 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hh--hhhhhhhccccC-CCcccccC
Confidence            554  9999999986532 223322  2234444433      23344444332 23  567776543322 23455555


Q ss_pred             CCceeEEeE
Q 007234          245 HPAVFMDCR  253 (612)
Q Consensus       245 ~~~~~~~~~  253 (612)
                      .++..++..
T Consensus       329 ~pG~cismq  337 (463)
T KOG1645|consen  329 PPGICISMQ  337 (463)
T ss_pred             CCcceeeee
Confidence            555555443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.65  E-value=0.025  Score=54.14  Aligned_cols=190  Identities=11%  Similarity=0.136  Sum_probs=99.7

Q ss_pred             ccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            5 NIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         5 ~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      .+..|  +|+|+.+ ++|+....+.|...+. +|+.+..+.-..                 ..+...+.+..        
T Consensus        23 e~SGL--Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-----------------~~D~EgI~y~g--------   74 (248)
T PF06977_consen   23 ELSGL--TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-----------------FGDYEGITYLG--------   74 (248)
T ss_dssp             -EEEE--EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------SSEEEEEE-S--------
T ss_pred             Ccccc--EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-----------------CCCceeEEEEC--------
Confidence            35556  9999866 5555566788888886 588888775221                 12344444432        


Q ss_pred             cCCcEEEEEE-CCCcEEEEEcCCCe------EEEEe----ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC---C
Q 007234           84 LGSSLLVLGT-GGGDVLALAVSAGQ------LKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---G  149 (612)
Q Consensus        84 ~~~~~l~~gs-~~g~I~vwd~~~~~------~~~~~----~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~---~  149 (612)
                        +..+++.. .++.+.++++....      ...++    ...+...+-+++|.|.++.|+.+-...-..++.+..   .
T Consensus        75 --~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~  152 (248)
T PF06977_consen   75 --NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG  152 (248)
T ss_dssp             --TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S
T ss_pred             --CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc
Confidence              33444444 57889888883321      11111    123556799999999888888887666656665543   2


Q ss_pred             ceeEEE-----e---cCCCCeeEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEEecCC---------CCEEEEEEee
Q 007234          150 SLLGKF-----R---ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSD  209 (612)
Q Consensus       150 ~~~~~~-----~---~~~~~v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp  209 (612)
                      ..+...     .   .....+.+++++|.... ++.++  ..|..+| .+|+.+..+.-..         ...-.|+|.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            111111     1   12346789999996544 44444  6888999 6777665553222         2467899999


Q ss_pred             CCcEEEEEEcCCCeEEEE
Q 007234          210 NGKYVLSSAVGERYIALW  227 (612)
Q Consensus       210 ~~~~l~s~s~~d~~i~vw  227 (612)
                      +|+..++ + +-+..++|
T Consensus       232 ~G~LYIv-s-EpNlfy~f  247 (248)
T PF06977_consen  232 DGNLYIV-S-EPNLFYRF  247 (248)
T ss_dssp             T--EEEE-E-TTTEEEEE
T ss_pred             CCCEEEE-c-CCceEEEe
Confidence            9975554 4 45554443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.64  E-value=0.013  Score=60.43  Aligned_cols=215  Identities=15%  Similarity=0.204  Sum_probs=112.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--Eeecc-------------CCcccccc--cccccccccc--------
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADI-------------ASTETTSL--YGNRLEREHL--------   64 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~-------------~~~~~~~~--~s~~~~~~~~--------   64 (612)
                      .+.|+++..-||.|...|.|.||.+...+...  .....             .+....+.  ..+.+..|..        
T Consensus         6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~   85 (395)
T PF08596_consen    6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK   85 (395)
T ss_dssp             EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred             EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence            45999998899999999999999876543322  00000             11111111  0111111100        


Q ss_pred             ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec-c------CCCCCeEEEEEec-----CC---
Q 007234           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-D------CHPGGVSAISFAT-----HG---  129 (612)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~------~h~~~V~~l~~sp-----~~---  129 (612)
                      ....++++-.          +-.++++|..+|.+.|.|++....+..-. .      .....|+++.|.-     |+   
T Consensus        86 ~g~vtal~~S----------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   86 QGPVTALKNS----------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             CCcEeEEecC----------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            1223333321          15689999999999999998887765521 1      2345688898862     22   


Q ss_pred             CEEEEEecCCcEEEEECC--C-Cce----eEEEecCCCCeeEEE-ECCC---------------------CCEEEEeC-C
Q 007234          130 SCIYSAGADGMVCEIDPL--T-GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA-G  179 (612)
Q Consensus       130 ~~l~s~s~dg~v~iwd~~--~-~~~----~~~~~~~~~~v~~l~-~spd---------------------g~~l~~~~-g  179 (612)
                      -.+++|...|.+.+|.+.  . +..    ......+.+++..|. ++.+                     ..++++++ .
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            358899999999999764  1 211    111223445555554 3221                     12455555 8


Q ss_pred             eEEEEEcCCCeeEEEEecCCCCEEEEEEe-----eCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          180 QLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       180 ~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----p~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .++++..-+.+...+.....-....+.+.     ..+..|++-. .+|.|+++.+..-+..
T Consensus       236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred             ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence            99999998887765554332333445553     2455666665 7999999999887655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00029  Score=74.98  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=84.3

Q ss_pred             EEEEEecCCCEEEEEe----cCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE
Q 007234          121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       121 ~~l~~sp~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~  194 (612)
                      +-.+|+|...+|++++    ..|.|.||- .+|++-+... ..-.+++++|+|..-.|+.|=  |.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            4457999999988886    457888885 5666544332 123457899999887777775  8999999888777666


Q ss_pred             EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      ...|+.+|..+.||++|..++++. .-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence            678999999999999999999875 78999999876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.62  E-value=0.0029  Score=70.62  Aligned_cols=189  Identities=12%  Similarity=0.202  Sum_probs=119.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC----CCC------------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----LTG------------  149 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~----~~~------------  149 (612)
                      ...+++++..|.|.+-|+++....  +...-...|.+++|+||++.++..+.++++.+-+-    -.-            
T Consensus        80 ~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk  157 (1265)
T KOG1920|consen   80 TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK  157 (1265)
T ss_pred             cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence            667999999999999999887653  22335678999999999999998888888766432    111            


Q ss_pred             -------ceeEEEecCC---------------------CCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE
Q 007234          150 -------SLLGKFRAST---------------------KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       150 -------~~~~~~~~~~---------------------~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~  194 (612)
                             +....|++..                     +.=++|.|.-||+++|+..       ..|++||-+ |..-..
T Consensus       158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~  236 (1265)
T KOG1920|consen  158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST  236 (1265)
T ss_pred             cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence                   1111122111                     1124589999999999843       489999976 443222


Q ss_pred             EecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE--
Q 007234          195 FSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI--  270 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~--  270 (612)
                      -....+.-.+++|-|.|..+++...  .|+.|.+|.-+.-....  .....+.....+..++|+     .++..|++.  
T Consensus       237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wn-----s~sdiLAv~~~  309 (1265)
T KOG1920|consen  237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWN-----SNSDILAVVTS  309 (1265)
T ss_pred             cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccchheeeec-----CCCCceeeeec
Confidence            2223334467899999998887531  24568888765543221  111222222224556676     778888773  


Q ss_pred             -ecCCcEEEEECCCc
Q 007234          271 -SETGVCYIWYGQNI  284 (612)
Q Consensus       271 -s~dg~i~iwd~~~~  284 (612)
                       .....|++|-..+.
T Consensus       310 ~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  310 NLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccccceEEEEEecCe
Confidence             33345999975443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.61  E-value=0.053  Score=53.45  Aligned_cols=232  Identities=12%  Similarity=0.088  Sum_probs=123.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEECC-CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234           14 SPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        14 spdg~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g   92 (612)
                      ...++.|+.|..+| |.+++.. ........+.                    ..++.+.-.+.-        +.+++. 
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--------------------~~I~ql~vl~~~--------~~llvL-   53 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--------------------SSITQLSVLPEL--------NLLLVL-   53 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeec--------------------ceEEEEEEeccc--------CEEEEE-
Confidence            34678899999999 8899983 2222222210                    012222222221        223333 


Q ss_pred             ECCCcEEEEEcCCCeEEEEe-------------ccCCCCCeEEEE--EecCCCEEEEEecCCcEEEEECCCC-----cee
Q 007234           93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL  152 (612)
Q Consensus        93 s~~g~I~vwd~~~~~~~~~~-------------~~~h~~~V~~l~--~sp~~~~l~s~s~dg~v~iwd~~~~-----~~~  152 (612)
                       .|+.+.++++..-......             .......+..++  -...+...+.+....+|.+|.....     +..
T Consensus        54 -sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   54 -SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             -cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence             4599999998754432210             111233455554  1223444444445568888876543     455


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecC------------CCCEEEEEEeeCCcEEEEEEc
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      +.+.. ...+.+++|.  ++.++.|. +...+.|+.++....-+...            ..++..+.. +++.+|++-  
T Consensus       133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--  206 (275)
T PF00780_consen  133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--  206 (275)
T ss_pred             EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence            55554 4678999998  55677775 88999999977654333211            123333333 445555532  


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~  296 (612)
                       |..-...|... +... ........  .........        .+|++.+.+ .|.||++.+++.++.+......
T Consensus       207 -~~~g~fv~~~G-~~~r-~~~i~W~~--~p~~~~~~~--------pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~~~  269 (275)
T PF00780_consen  207 -DNIGVFVNKNG-EPSR-KSTIQWSS--APQSVAYSS--------PYLIAFSSN-SIEVRSLETGELVQTIPLPNIR  269 (275)
T ss_pred             -cceEEEEcCCC-CcCc-ccEEEcCC--chhEEEEEC--------CEEEEECCC-EEEEEECcCCcEEEEEECCCEE
Confidence             44334444433 2221 11222222  222223222        467766664 5999999999888766654443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.55  E-value=0.0065  Score=55.64  Aligned_cols=205  Identities=12%  Similarity=0.116  Sum_probs=123.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC---CEEEEEecCCcEEEEECC--CCceeEEEec---
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPL--TGSLLGKFRA---  157 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~--~~~~~~~~~~---  157 (612)
                      +.++.+--..|.|.-||..+++....-.++.  ++.++.+--.+   .+.+.++..-.|--||..  .....+++..   
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            6777888888999889999988765544332  24455443333   234444444456667743  2233333211   


Q ss_pred             --CCCCeeEEEECCCCCEEEEeC-----------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       158 --~~~~v~~l~~spdg~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                        .+...+.-..+|+|++.+-.-           |.++.|-..  ..+..+.+.-+--+.++|+.+.+.+....+.+-.|
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence              123566778899999954221           344444321  12222222333345688998888777776667788


Q ss_pred             EEEE--cCCCccccceeeEeecC----CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee
Q 007234          225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (612)
Q Consensus       225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (612)
                      .-||  ..++.......++.+..    ........+..     .+|.+.++.-..|+|.-+|..+|+.+.+++-...+++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit  257 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT  257 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence            7788  66665544444454443    22333344443     6788888888888999999999999988775554444


Q ss_pred             c
Q 007234          299 S  299 (612)
Q Consensus       299 ~  299 (612)
                      +
T Consensus       258 s  258 (310)
T KOG4499|consen  258 S  258 (310)
T ss_pred             E
Confidence            3

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.53  E-value=0.079  Score=57.25  Aligned_cols=199  Identities=11%  Similarity=0.148  Sum_probs=116.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +..+..++.++.|.-.|..+|+.+.++...............    .....  ...+            +..+++++.+|
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~----~~~rg--~av~------------~~~v~v~t~dg  130 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCD----VVNRG--VALY------------DGKVFFGTLDA  130 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccc----ccccc--ceEE------------CCEEEEEcCCC
Confidence            446667777889999999999999887532110000000000    00000  0000            45688899999


Q ss_pred             cEEEEEcCCCeEEEEeccCCCC---CeEEEEEecCCCEEEEEe------cCCcEEEEECCCCceeEEEecCCC-------
Q 007234           97 DVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTK-------  160 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~-------  160 (612)
                      .+.-+|..+|+.+++.......   .+++--.--++ .++.++      .+|.|..+|.++|+.+-.+..-..       
T Consensus       131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~  209 (527)
T TIGR03075       131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK  209 (527)
T ss_pred             EEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence            9999999999999876432111   12211111134 455543      268999999999987766433111       


Q ss_pred             ------------------------Ce-eEEEECCCCCEEEEeC-------C-----------eEEEEEcCCCeeEEEEec
Q 007234          161 ------------------------GI-SCMAVSSDGKMLATAA-------G-----------QLKTFNCSDHKKMQKFSG  197 (612)
Q Consensus       161 ------------------------~v-~~l~~spdg~~l~~~~-------g-----------~i~lwd~~~~~~~~~~~~  197 (612)
                                              .+ ..+++.|...+++.+.       +           +|.-.|++||+..-.++.
T Consensus       210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~  289 (527)
T TIGR03075       210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT  289 (527)
T ss_pred             cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence                                    11 1346666666666543       1           577778899988776654


Q ss_pred             CCCCEEE---------EEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          198 HPGAVRF---------MTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       198 h~~~v~~---------l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ....+..         +.+..+|+   .++.+ ..+|.+.+.|-.+++.+
T Consensus       290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-DRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCccccCCCCcEEEEeccCCcEEEEEEEe-CCCceEEEEECCCCcee
Confidence            3222211         22224665   44454 48999999999988753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.0015  Score=68.63  Aligned_cols=143  Identities=14%  Similarity=0.178  Sum_probs=98.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE---E--E-ecCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG---K--F-RAST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~---~--~-~~~~  159 (612)
                      ++++++|+..|.+++|+-..++....-..+..+.+..+..+++..+++.|+..|.|.++-+..+.+..   .  . +.|.
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~  124 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK  124 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence            78999999999999999888876544434455667778889988889999999999999876543211   1  1 1256


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCC----eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ..|++++|++++..+++|+  |+|..-.+.+.    .....+..-.+.|-.+.... +..|++..  -+ ..+++.+.+
T Consensus       125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl--~r-~~Lc~tE~e  199 (726)
T KOG3621|consen  125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTL--TR-CILCQTEAE  199 (726)
T ss_pred             ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhh--hh-hheeecchh
Confidence            7999999999999999999  88888777662    11233333456676666543 33444432  22 345555443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.47  E-value=0.13  Score=51.99  Aligned_cols=234  Identities=11%  Similarity=0.100  Sum_probs=108.1

Q ss_pred             EEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        12 ~fspdg~~las~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +|.+||+.|+.++. ||  .+.+.|+.+++..+--.+..........+++                           ++.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~   94 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA   94 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence            68899987776665 54  5667799999877644432221111222221                           344


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEEe----------------------cCCcEEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAG----------------------ADGMVCEI  144 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s----------------------~dg~v~iw  144 (612)
                      ++-...+..|.-.|+.+.+....+ .....-+-...|.  .++..++..-                      ..+.|...
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence            444445567888888887653222 2233334334443  3455443321                      12456677


Q ss_pred             ECCCCceeEEEecCCCCeeEEEECCCCCE-EEEeC-C---e--EEEEEcCC-CeeEEEEecCCC--CEEEEEEeeCCcEE
Q 007234          145 DPLTGSLLGKFRASTKGISCMAVSSDGKM-LATAA-G---Q--LKTFNCSD-HKKMQKFSGHPG--AVRFMTFSDNGKYV  214 (612)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~~~~-g---~--i~lwd~~~-~~~~~~~~~h~~--~v~~l~~sp~~~~l  214 (612)
                      |+.+|+....+. ....+..+.|+|.... |.-+. |   .  -+||-+++ +...+.+..|..  .+..=-|.|||..+
T Consensus       174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI  252 (386)
T ss_dssp             ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred             ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence            888888766665 4567889999995544 44443 2   2  35665543 333343433322  23334688999877


Q ss_pred             EEEEc----CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC----------------
Q 007234          215 LSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG----------------  274 (612)
Q Consensus       215 ~s~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg----------------  274 (612)
                      ..-+.    .+..|.-+|+.+++..   .....  + .. .-...     ++||++++.=+.|.                
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~~---~~~~~--p-~~-~H~~s-----s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p  320 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGERR---RLMEM--P-WC-SHFMS-----SPDGKLFVGDGGDAPVDVADAGGYKIENDP  320 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--EE---EEEEE----SE-EEEEE------TTSSEEEEEE-------------------
T ss_pred             EEEeecCCCCceEEEeeCCCCCCce---EEEeC--C-ce-eeeEE-----cCCCCEEEecCCCCCccccccccceecCCc
Confidence            65432    2446666777776533   12221  1 11 12222     38888776655542                


Q ss_pred             cEEEEECCCcce
Q 007234          275 VCYIWYGQNIEE  286 (612)
Q Consensus       275 ~i~iwd~~~~~~  286 (612)
                      -|++++++.+..
T Consensus       321 ~i~~~~~~~~~~  332 (386)
T PF14583_consen  321 WIYLFDVEAGRF  332 (386)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEeccccCce
Confidence            456677766543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.43  E-value=0.018  Score=58.26  Aligned_cols=175  Identities=10%  Similarity=0.109  Sum_probs=102.0

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEec---C----CCEEEEEec----------CCcEEEEECCCC----ceeEEE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT---H----GSCIYSAGA----------DGMVCEIDPLTG----SLLGKF  155 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp---~----~~~l~s~s~----------dg~v~iwd~~~~----~~~~~~  155 (612)
                      .|++.|..+.+.+..+.-.....+++++...   +    ..+++.|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            4788888887766555433344555554432   2    356776642          288999999874    122221


Q ss_pred             --ecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCe-eEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          156 --RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       156 --~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~-~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                        ....++|++++-- +|+++++.++.|++|++...+ ....-. .....+.++...  +.+++.+. ..+.+.++..+.
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~~~~~~~  158 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEEEEEEET
T ss_pred             EEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEEEEEEEc
Confidence              2246789999877 556666666899999998887 433222 223356666554  55788776 456677775554


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .... . ...........+..+.+-     .++..++++..+|.+.++...
T Consensus       159 ~~~~-l-~~va~d~~~~~v~~~~~l-----~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  159 ENNK-L-ILVARDYQPRWVTAAEFL-----VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTE--E-EEEEEESS-BEEEEEEEE------SSSEEEEEETTSEEEEEEE-
T ss_pred             cCCE-E-EEEEecCCCccEEEEEEe-----cCCcEEEEEcCCCeEEEEEEC
Confidence            2211 1 122222333333444443     445689999999999999764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.37  E-value=0.17  Score=51.59  Aligned_cols=150  Identities=11%  Similarity=0.044  Sum_probs=81.8

Q ss_pred             CcEEEEE--ECCCc----EEEEEcCCCeEEEEeccCC--CCCeEEEEEecCCCEEEEEec--------------------
Q 007234           86 SSLLVLG--TGGGD----VLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGA--------------------  137 (612)
Q Consensus        86 ~~~l~~g--s~~g~----I~vwd~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~s~--------------------  137 (612)
                      +.+++++  ..+|.    +.++|-++-+...+.....  ..--.++.|.|..+.++|...                    
T Consensus       141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y  220 (461)
T PF05694_consen  141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY  220 (461)
T ss_dssp             --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred             ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence            4455543  33333    8888888777765554322  234567888898888888632                    


Q ss_pred             CCcEEEEECCCCceeEEEecCCC--CeeEEEEC--CCCCEEEEeC---CeEEEEEc-CCCe----eEEEEecC-------
Q 007234          138 DGMVCEIDPLTGSLLGKFRASTK--GISCMAVS--SDGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH-------  198 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~s--pdg~~l~~~~---g~i~lwd~-~~~~----~~~~~~~h-------  198 (612)
                      ..++.+||+.+.+.++++.-...  .+..|.|.  |+..+-+++.   ++|..|-- +.++    .+-.+...       
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            36799999999999999987554  34566664  5566666655   56666644 3332    22222211       


Q ss_pred             ----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          199 ----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       199 ----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                                ..-|+.|.+|.|.++|..++-..|.|+.||+......
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence                      3457899999999999999878999999999876543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.31  E-value=0.12  Score=51.36  Aligned_cols=143  Identities=15%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             CCeEEEEEecCCCEEEEEec-----------CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEE
Q 007234          118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT  183 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~l  183 (612)
                      ..-+++...|+|.+.++...           -|.|+..|. .+..++.+..+-..-+.|+||||++.|+.+.   +.|+-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            34578888999876554333           134555554 4555665555455668899999999998887   68888


Q ss_pred             EEcCC--C----e-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC-eEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234          184 FNCSD--H----K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (612)
Q Consensus       184 wd~~~--~----~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (612)
                      |++..  +    + ....+..+.+..-.++...+|.+.+++. ++| .|.+|+.+ +++.     ....-+....++.+|
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F  262 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF  262 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence            87752  2    1 1222233456667788888888765443 444 89999988 5543     233344344555666


Q ss_pred             cCCccCCCCcEEEEEec
Q 007234          256 DNGGVDDAGLYVLAISE  272 (612)
Q Consensus       256 ~~~~~~~~~~~l~t~s~  272 (612)
                      .    .++.+.|++.+.
T Consensus       263 g----G~~~~~L~iTs~  275 (307)
T COG3386         263 G----GPDLNTLYITSA  275 (307)
T ss_pred             e----CCCcCEEEEEec
Confidence            5    255555555544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.29  E-value=0.12  Score=49.44  Aligned_cols=175  Identities=11%  Similarity=0.103  Sum_probs=113.2

Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .|..+|.++-+.+.-|  .|+.+|+.+|+......-.              ....+...+.+             ++.+.
T Consensus        51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--------------~~~FgEGit~~-------------~d~l~  103 (264)
T PF05096_consen   51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--------------PRYFGEGITIL-------------GDKLY  103 (264)
T ss_dssp             EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--------------TT--EEEEEEE-------------TTEEE
T ss_pred             EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--------------ccccceeEEEE-------------CCEEE
Confidence            5667787777777655  7999999999987665411              11112222211             15566


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (612)
                      ...=.+|...+||..+-+.+.++.  ..+.=++++  .+++.|+.......++.+|..+.+..+.+....     ..++-
T Consensus       104 qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE  179 (264)
T PF05096_consen  104 QLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE  179 (264)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred             EEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence            667778889999999988887774  334556776  467788888778889999999888777765432     24566


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec------------C---CCCEEEEEEeeCCcEEEEEE
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~~~~l~s~s  218 (612)
                      +.|. +|.+.|-.=  ..|...|..+|++...+.-            +   ..-.+.|++.|....|+.+|
T Consensus       180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7776 565555443  7899999999998776621            1   23478899998877666665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0013  Score=68.37  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeE-EEEEecCCCEEEEEecCCcEEEE
Q 007234           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI  144 (612)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~dg~v~iw  144 (612)
                      ....-+.|.|.         -.++|+++.+|.|.++.++ .+.++.+. -|...++ +++|.|||+.++.|-.||+|++.
T Consensus        21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            34556778776         6789999999999999988 77777774 3666666 99999999999999999999999


Q ss_pred             ECCCCceeEEEec-CCCCeeEEEECC
Q 007234          145 DPLTGSLLGKFRA-STKGISCMAVSS  169 (612)
Q Consensus       145 d~~~~~~~~~~~~-~~~~v~~l~~sp  169 (612)
                      |+.++..+..+.. ....|.++-|++
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            9999988776322 334777887863

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.24  E-value=0.062  Score=55.50  Aligned_cols=169  Identities=15%  Similarity=0.221  Sum_probs=91.3

Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe--c------CCCCeeEEEEC-----CCC---CEEEEeC
Q 007234          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--A------STKGISCMAVS-----SDG---KMLATAA  178 (612)
Q Consensus       115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~l~~s-----pdg---~~l~~~~  178 (612)
                      ...++|++++.|.-| +++.|..+|.+.+.|++....+..-.  .      ....++++.|+     .|+   -.|++|.
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            346889999998544 89999999999999998777766522  1      12367888886     233   4566665


Q ss_pred             --CeEEEEEcC--C-Cee----EEEEecCCCCEEEEE-EeeC---------------------CcEEEEEEcCCCeEEEE
Q 007234          179 --GQLKTFNCS--D-HKK----MQKFSGHPGAVRFMT-FSDN---------------------GKYVLSSAVGERYIALW  227 (612)
Q Consensus       179 --g~i~lwd~~--~-~~~----~~~~~~h~~~v~~l~-~sp~---------------------~~~l~s~s~~d~~i~vw  227 (612)
                        |.+.+|.+-  . +..    ......+.++|..|. |+.+                     ..+++.++  +..++++
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS--e~~irv~  240 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS--ESDIRVF  240 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---SSEEEEE
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc--ccceEEE
Confidence              899888764  1 211    122224667776664 3211                     12455543  6789999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      ...+.+..    ...... ......+.+-+..-...+..|++-..+|.|++|.+...+.+...+
T Consensus       241 ~~~~~k~~----~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  241 KPPKSKGA----HKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             -TT---EE----EEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             eCCCCccc----ceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            98877643    122222 122222222100000356778888999999999999888775443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.21  E-value=0.16  Score=48.65  Aligned_cols=194  Identities=12%  Similarity=0.158  Sum_probs=105.0

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                      ..+.+.|.+.+        +.++++....+.|..++. +|+.+.++.-.-.+..-++++..++.++++--.++.+.++++
T Consensus        23 e~SGLTy~pd~--------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   23 ELSGLTYNPDT--------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             -EEEEEEETTT--------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CccccEEcCCC--------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            35667777764        667888888888988897 477777764333567889999888876666656899999987


Q ss_pred             CCCc------eeEEEe-----cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC---CeeE--EEE------ecCCCCE
Q 007234          147 LTGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKM--QKF------SGHPGAV  202 (612)
Q Consensus       147 ~~~~------~~~~~~-----~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~---~~~~--~~~------~~h~~~v  202 (612)
                      ....      ....+.     .+...+-.++|+|.++.|+++.  .-..+|.+..   ...+  ...      ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3321      112222     2334789999999877777766  3444444432   1111  111      1233457


Q ss_pred             EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC-------CceeEEeEEecCCccCCCCcEEEEEecCCc
Q 007234          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (612)
Q Consensus       203 ~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~  275 (612)
                      .++.++|....|+.-+..++.+..+| ..++..   ....+..       .-.-...+++.     ++|+ |...++-+.
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~---~~~~L~~g~~gl~~~~~QpEGIa~d-----~~G~-LYIvsEpNl  243 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVV---SSLSLDRGFHGLSKDIPQPEGIAFD-----PDGN-LYIVSEPNL  243 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EE---EEEE-STTGGG-SS---SEEEEEE------TT---EEEEETTTE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE---EEEEeCCcccCcccccCCccEEEEC-----CCCC-EEEEcCCce
Confidence            88999997665555556888999998 444432   1222222       11223556675     7775 445556665


Q ss_pred             EEEE
Q 007234          276 CYIW  279 (612)
Q Consensus       276 i~iw  279 (612)
                      .++|
T Consensus       244 fy~f  247 (248)
T PF06977_consen  244 FYRF  247 (248)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.1  Score=49.48  Aligned_cols=181  Identities=13%  Similarity=0.110  Sum_probs=105.7

Q ss_pred             CcEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec------------------CCcEE
Q 007234           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA------------------DGMVC  142 (612)
Q Consensus        86 ~~~l~~gs~~-----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~------------------dg~v~  142 (612)
                      +.+|+..-+|     |-|-|||...+-...--...|.-.-..+.|.+||+.++.+..                  .-++.
T Consensus       125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv  204 (366)
T COG3490         125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV  204 (366)
T ss_pred             CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence            5666655444     448899998654322223567778889999999999888742                  11334


Q ss_pred             EEECCCCceeEEEec----CCCCeeEEEECCCCCEEEEeC--Ce-----EEEEEcCCCeeEEEEe-------cCCCCEEE
Q 007234          143 EIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVRF  204 (612)
Q Consensus       143 iwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~--g~-----i~lwd~~~~~~~~~~~-------~h~~~v~~  204 (612)
                      +.|..+|+.+.+..-    +.-.+..++..+||+.++.+-  |.     -.+=-...++.+.-+.       .-...|-+
T Consensus       205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs  284 (366)
T COG3490         205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS  284 (366)
T ss_pred             EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence            445455655544322    234688888888888777654  21     1111112333333222       12356778


Q ss_pred             EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ++.+.+..+++.++-..+...+||..++....       ...-.....+.       +.+.-+++.+.+|.+.++.
T Consensus       285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv~-------~a~l~daaGva-------~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         285 IAANRRDGLVALTSPRGNRAVIWDAATGAVVS-------EAALPDAAGVA-------AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             eeecccCCeEEEecCCCCeEEEEEcCCCcEEe-------cccccccccce-------eccCceEEecCCceEEecc
Confidence            88886666666665455678899999997441       11111111111       3445577778888888874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.0042  Score=68.52  Aligned_cols=95  Identities=21%  Similarity=0.280  Sum_probs=73.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE-
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC-  164 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~-  164 (612)
                      +..+++|+..|.|...|+.++-....-...-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.++ 
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            5568999999999999987753211111234679999999999999999999999999999999999988776665444 


Q ss_pred             --EEECCCCCEEEEeC--Ce
Q 007234          165 --MAVSSDGKMLATAA--GQ  180 (612)
Q Consensus       165 --l~~spdg~~l~~~~--g~  180 (612)
                        +.+..++..+++++  |.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc
Confidence              44556677788887  54

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.15  E-value=0.022  Score=59.67  Aligned_cols=130  Identities=12%  Similarity=0.189  Sum_probs=75.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      ++++++ +.+|.-.||.....+.. .     .+.-..+.|.+.+ .+++-...++|.++.--..+....++.. ..+..|
T Consensus        44 gr~v~V-~g~geY~iyt~~~~r~k-~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I  114 (443)
T PF04053_consen   44 GRFVLV-CGDGEYEIYTALAWRNK-A-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI  114 (443)
T ss_dssp             SSEEEE-EETTEEEEEETTTTEEE-E-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred             CCEEEE-EcCCEEEEEEccCCccc-c-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence            666666 77888888875444332 1     2344578898855 4777777888999742222222233322 123333


Q ss_pred             EECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       166 ~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      -.   |.+|+..+ +.|.+||+.+++.++++.-.  +|..+.|+++|.+++..+  +..+.+++.+.
T Consensus       115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~  174 (443)
T PF04053_consen  115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNL  174 (443)
T ss_dssp             E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-H
T ss_pred             Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecc
Confidence            22   77777777 77999999999999998733  489999999999998886  44677776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.45  Score=50.01  Aligned_cols=188  Identities=13%  Similarity=0.121  Sum_probs=105.8

Q ss_pred             CcEEEEE-ECCCc----EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----------cEEEEECCCC
Q 007234           86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----------MVCEIDPLTG  149 (612)
Q Consensus        86 ~~~l~~g-s~~g~----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----------~v~iwd~~~~  149 (612)
                      +++++.+ +.+|.    ++++|+.+|+.+......  ..-..+.|.++++.|+....+.           .|+.|.+.+.
T Consensus       135 g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~  212 (414)
T PF02897_consen  135 GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP  212 (414)
T ss_dssp             SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred             CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence            6666655 55565    999999999876544321  1122399999988876665333           3788888766


Q ss_pred             cee--EEEecCCCC--eeEEEECCCCCEEEEeC------CeEEEEEcCCC----eeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          150 SLL--GKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       150 ~~~--~~~~~~~~~--v~~l~~spdg~~l~~~~------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      ..-  ..+......  ...+..++|+++++...      ..+++.|+..+    .....+..+...+....-+..+.+++
T Consensus       213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi  292 (414)
T PF02897_consen  213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI  292 (414)
T ss_dssp             GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred             hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence            432  445444333  56888999999988654      25888898875    33444444444444433334555554


Q ss_pred             EEEc--CCCeEEEEEcCCCccccceeeEeecCCc-eeEEeEEecCCccCCCCcEEEEEecCC--cEEEEECC
Q 007234          216 SSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQ  282 (612)
Q Consensus       216 s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iwd~~  282 (612)
                      .+..  ..+.|...++.......... ....+.. ..+..+...      .+.+++....++  .|+++++.
T Consensus       293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  293 LTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSLF------KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEEE------TTEEEEEEEETTEEEEEEEETT
T ss_pred             eeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEEE------CCEEEEEEEECCccEEEEEECC
Confidence            4421  23466666777665321111 2223332 344444332      335555556666  68889988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.11  E-value=0.096  Score=57.11  Aligned_cols=123  Identities=12%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------------CcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      |.+++.. +.. ..+..+.  ..+.-.|+|+|+.+++.+..            +.+.+.++..++...   .....|..+
T Consensus       381 Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl  453 (591)
T PRK13616        381 LWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISEL  453 (591)
T ss_pred             EEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeE
Confidence            5555642 222 3333332  37889999998888777532            223333443333322   224579999


Q ss_pred             EECCCCCEEEEeC-CeEEE---EEcCCCee-E---EEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          166 AVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       166 ~~spdg~~l~~~~-g~i~l---wd~~~~~~-~---~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      .|||||..++... |.|++   -....|.. +   ..+. +-...+.++.|.+++.+++...  ++...+|.+
T Consensus       454 ~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~--~~~~~v~~v  524 (591)
T PRK13616        454 QLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS--DPEHPVWYV  524 (591)
T ss_pred             EECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec--CCCCceEEE
Confidence            9999999988766 77777   44344531 1   1122 2233468899999998654433  333344544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.06  E-value=0.18  Score=52.11  Aligned_cols=76  Identities=11%  Similarity=0.215  Sum_probs=51.5

Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEE-EEEe-eC----------------CcEEEEEEc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFS-DN----------------GKYVLSSAV  219 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~-l~~s-p~----------------~~~l~s~s~  219 (612)
                      ..+.+++.+|++++.|+.+  |.|.++|+.++..++.++|-...=.. +... +.                ..+|+.=.-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            3477899999999999888  99999999999888877775543111 1111 11                123333333


Q ss_pred             CCCeEEEEEcCCCccc
Q 007234          220 GERYIALWRTDGVKKQ  235 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~  235 (612)
                      .-|.|.||.++.+...
T Consensus       388 rRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRV  403 (415)
T ss_pred             cCCeEEEEecCCCCEE
Confidence            5778899998888644

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.04  E-value=0.22  Score=52.02  Aligned_cols=97  Identities=22%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             EecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-CCC
Q 007234          125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA  201 (612)
Q Consensus       125 ~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~  201 (612)
                      ++.+....+....++.+.+.+-...+.   +. ..+++..+++||+|+++|.-.  |.+.+.+..-.+.+.++... ...
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            344444444444555555444322211   11 245899999999999998766  88888887666666666543 345


Q ss_pred             EEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          202 VRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       202 v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      ...+.|+.++..++.   ....+.+..
T Consensus       262 p~~~~WCG~dav~l~---~~~~l~lvg  285 (410)
T PF04841_consen  262 PKQMAWCGNDAVVLS---WEDELLLVG  285 (410)
T ss_pred             CcEEEEECCCcEEEE---eCCEEEEEC
Confidence            567788766543332   234555554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.96  E-value=0.64  Score=48.64  Aligned_cols=187  Identities=16%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234           10 LTSFSPALDYFAICSGD-----------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus        10 ~~~fspdg~~las~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      .++.+|.|--+|....+           ..|.||+. .|+.+.++.          |.        .....++.|..   
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~----------w~--------~~~iv~~~wt~---   90 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIP----------WD--------SGRIVGMGWTD---   90 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEE----------EC--------CCCEEEEEECC---
Confidence            34777777777766544           13666665 355544432          21        13566777765   


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCC-----eEEEEEecCCCEEEEEecCCcEEEEECCCCc-e
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGG-----VSAISFATHGSCIYSAGADGMVCEIDPLTGS-L  151 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~-----V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~  151 (612)
                             ...|++-..+|.+++||+.... ...+. ......     +....+..+|-.+++  .++.+.+.+-.... .
T Consensus        91 -------~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~  160 (410)
T PF04841_consen   91 -------DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVK  160 (410)
T ss_pred             -------CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccch
Confidence                   4567888899999999987443 11111 011112     222334435533333  34445444322111 1


Q ss_pred             eEEEecCCCCee---------E-EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          152 LGKFRASTKGIS---------C-MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       152 ~~~~~~~~~~v~---------~-l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      .+.+........         . ..++.+....+...  +.+++.+-...+.   +. ..+++..|++||+|++++.-. 
T Consensus       161 ~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t-  235 (410)
T PF04841_consen  161 LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFT-  235 (410)
T ss_pred             hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEE-
Confidence            111111000000         0 12222332222222  3444333222111   21 246899999999999998886 


Q ss_pred             CCCeEEEEEcCCCc
Q 007234          220 GERYIALWRTDGVK  233 (612)
Q Consensus       220 ~d~~i~vwd~~~~~  233 (612)
                      .+|.+.+...+-.+
T Consensus       236 ~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  236 DSGNLWVVSSDFSE  249 (410)
T ss_pred             CCCCEEEEECcccc
Confidence            68988888765554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.96  E-value=0.57  Score=48.06  Aligned_cols=163  Identities=11%  Similarity=0.128  Sum_probs=90.3

Q ss_pred             EEEEEcCCCeEEE-Eec---cCCCCCeEEEEEecCCCEEEEE--ecCC---cEEEEECCCCceeEEEecC-CC---CeeE
Q 007234           98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC  164 (612)
Q Consensus        98 I~vwd~~~~~~~~-~~~---~~h~~~V~~l~~sp~~~~l~s~--s~dg---~v~iwd~~~~~~~~~~~~~-~~---~v~~  164 (612)
                      +.|+|+.+++... ...   ..-...+..+.|.++++.|+..  +.+.   .+.++|..+++....+... ..   ....
T Consensus       160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~  239 (353)
T PF00930_consen  160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP  239 (353)
T ss_dssp             EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred             EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence            5567887776531 111   1234568899999999844433  3332   4667788777654443322 22   2235


Q ss_pred             EEEC-CCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCEEE-EEEeeCCcEEEEEEcCC----CeEEEEEcC-CC
Q 007234          165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV  232 (612)
Q Consensus       165 l~~s-pdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~-l~~sp~~~~l~s~s~~d----~~i~vwd~~-~~  232 (612)
                      ..+. +++..++..+     ..|++++...+.. +.+....-.|.. +.+.++++.++..+..+    +.+..-++. .+
T Consensus       240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             cccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            5554 7776665544     4888889877763 466656667755 57788877766555332    245555566 43


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      ...      .+......-..+.|+     |+|++++-.+.
T Consensus       319 ~~~------~LT~~~~~~~~~~~S-----pdg~y~v~~~s  347 (353)
T PF00930_consen  319 EPK------CLTCEDGDHYSASFS-----PDGKYYVDTYS  347 (353)
T ss_dssp             EEE------ESSTTSSTTEEEEE------TTSSEEEEEEE
T ss_pred             CeE------eccCCCCCceEEEEC-----CCCCEEEEEEc
Confidence            322      121111111345666     88888766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>smart00320 WD40 WD40 repeats

Probab=96.92  E-value=0.0031  Score=39.93  Aligned_cols=39  Identities=33%  Similarity=0.693  Sum_probs=33.5

Q ss_pred             CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      +++...+..|...|.++.|.+++.++++++ .|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence            355677788999999999999998888887 799999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.88  E-value=0.2  Score=49.37  Aligned_cols=141  Identities=17%  Similarity=0.206  Sum_probs=91.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE----------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----------  155 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~----------  155 (612)
                      ++.+++|+.+| +.+++........+..  +...|..+...|+-+.+++-+ |+.++++++..-.....-          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            78899999999 9999994333332332  334599999999877766664 599999998765433310          


Q ss_pred             ----ecCCCCeeEEE---ECCCCCEEEEeC-CeEEEEEcCCC-----eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234          156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (612)
Q Consensus       156 ----~~~~~~v~~l~---~spdg~~l~~~~-g~i~lwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~  222 (612)
                          ......+...+   -...+..|+++. ..|.+|.....     +..+++. -...+..+.|.  ++.++.+.  .+
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~  157 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK  157 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence                01122444444   223445666665 78888877553     4566665 34778899998  44566664  34


Q ss_pred             eEEEEEcCCCccc
Q 007234          223 YIALWRTDGVKKQ  235 (612)
Q Consensus       223 ~i~vwd~~~~~~~  235 (612)
                      ...+.|+.++...
T Consensus       158 ~f~~idl~~~~~~  170 (275)
T PF00780_consen  158 GFYLIDLNTGSPS  170 (275)
T ss_pred             ceEEEecCCCCce
Confidence            5788999876543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.86  E-value=0.34  Score=54.39  Aligned_cols=198  Identities=16%  Similarity=0.220  Sum_probs=116.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC-------CeEEEEEec----------------CCCEEEEEecCCcEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC  142 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~-------~V~~l~~sp----------------~~~~l~s~s~dg~v~  142 (612)
                      +..+++++.++.|.-.|..+|+.++++......       ...++.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            678899999999999999999999987532111       123344432                234788889999999


Q ss_pred             EEECCCCceeEEEecCCCCe-------------eEEEECC--CCCEEEEe------------CCeEEEEEcCCCeeEEEE
Q 007234          143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS--DGKMLATA------------AGQLKTFNCSDHKKMQKF  195 (612)
Q Consensus       143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~sp--dg~~l~~~------------~g~i~lwd~~~~~~~~~~  195 (612)
                      ..|.++|+.+..|... +.+             ..+.-.|  .+..+++|            +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999988766421 111             1111122  12344444            267999999999988776


Q ss_pred             ecC---------CCC--------E-EEEEEeeCCcEEEEEE-----------------cCCCeEEEEEcCCCccccceee
Q 007234          196 SGH---------PGA--------V-RFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       196 ~~h---------~~~--------v-~~l~~sp~~~~l~s~s-----------------~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      ..-         .+.        + ..+++.+....++...                 ...+.|.-.|+++++..   -.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W~  429 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---WV  429 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---EE
Confidence            421         000        0 1223333333322211                 01235666677777644   22


Q ss_pred             EeecCCce-e------EEeEEecCCccCCCCc---EEEEEecCCcEEEEECCCcceecccC
Q 007234          241 LAMEHPAV-F------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       241 ~~~~~~~~-~------~~~~~~~~~~~~~~~~---~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      +...|++. .      ...+.+.    ..+|+   .++.++.+|.++++|-++|+.+...+
T Consensus       430 ~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       430 FQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            32222211 0      1111121    02553   78999999999999999999886544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.82  E-value=0.4  Score=45.90  Aligned_cols=171  Identities=16%  Similarity=0.092  Sum_probs=100.4

Q ss_pred             EEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEEecCCC-CeeEEEECCCCCEEEEeC-CeEEEE
Q 007234          109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA-GQLKTF  184 (612)
Q Consensus       109 ~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~-g~i~lw  184 (612)
                      +.++......-..++.|..+|.++-+.+.-|  .|+.+|+.+++......-... .-..++...|.-+.++=- +...+|
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~y  115 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVY  115 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEE
Confidence            3344333345567899987888888888766  799999999988776554332 334556554443344433 899999


Q ss_pred             EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (612)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (612)
                      |..+.+.+.+++- .+.=..++  .|++.|+.+. +...+..+|..+-+......+.....+...+.-+-+      -+|
T Consensus       116 d~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------i~G  185 (264)
T PF05096_consen  116 DPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------ING  185 (264)
T ss_dssp             ETTTTEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------ETT
T ss_pred             ccccceEEEEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE------EcC
Confidence            9999999988863 34456666  5677777664 577899999877654421111111112222333333      245


Q ss_pred             cEEEEEecCCcEEEEECCCcceecc
Q 007234          265 LYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       265 ~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      ...|-.=....|..-|..+|+....
T Consensus       186 ~IyANVW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  186 KIYANVWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             EEEEEETTSSEEEEEETTT-BEEEE
T ss_pred             EEEEEeCCCCeEEEEeCCCCeEEEE
Confidence            5555555566778888888877653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.80  E-value=0.14  Score=55.85  Aligned_cols=180  Identities=14%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             CcEEEEEECC-Cc-----EEEEEcCCCeEEEEeccCCCCCeEEEEE-ecCCCEEEEEecCC-----cEEEEECCCCce--
Q 007234           86 SSLLVLGTGG-GD-----VLALAVSAGQLKWRLSDCHPGGVSAISF-ATHGSCIYSAGADG-----MVCEIDPLTGSL--  151 (612)
Q Consensus        86 ~~~l~~gs~~-g~-----I~vwd~~~~~~~~~~~~~h~~~V~~l~~-sp~~~~l~s~s~dg-----~v~iwd~~~~~~--  151 (612)
                      +.+.++|+.+ |.     +..||+.+++-.. ... -..+-..+.. .-+|...++||.||     +|-.||..+.+-  
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~-M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAP-MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceec-cCC-ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            6678888888 33     8889998887432 111 1111111111 12677888888886     477788765532  


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCC
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d  221 (612)
                      +..+......+..+.  -+|++.++|+        .++..||..+++-..  .+....... .++ .-++...+.+| .|
T Consensus       411 va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG-~~  485 (571)
T KOG4441|consen  411 VAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGG-FD  485 (571)
T ss_pred             cCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECC-cc
Confidence            111111111222222  2577777776        368899988875432  221111111 122 23455556665 45


Q ss_pred             C-----eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECC
Q 007234          222 R-----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQ  282 (612)
Q Consensus       222 ~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~  282 (612)
                      +     +|..||..+.+-.   .+..+..+.....++.       -++...++|+.||     +|..||..
T Consensus       486 ~~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~-------~~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  486 GTSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVV-------LGGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             CCCccceEEEEcCCCCcee---EcccCccccccccEEE-------ECCEEEEEecccCccccceeEEcCCC
Confidence            4     3777888776533   2222222222222222       3566777777765     34455443

>smart00320 WD40 WD40 repeats

Probab=96.79  E-value=0.0037  Score=39.56  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=29.4

Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (612)
Q Consensus       114 ~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd  145 (612)
                      ..|...|.++.|++++..+++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            46888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0071  Score=63.08  Aligned_cols=91  Identities=12%  Similarity=0.133  Sum_probs=75.8

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCee-EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~  194 (612)
                      ..|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+.+|+|-  |+|++.|+.++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467888999998999999999999999887 788888886666676 999999999999997  9999999999877665


Q ss_pred             E-ecCCCCEEEEEEee
Q 007234          195 F-SGHPGAVRFMTFSD  209 (612)
Q Consensus       195 ~-~~h~~~v~~l~~sp  209 (612)
                      + .....+|.++.|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            3 23456777888864

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.11  Score=53.35  Aligned_cols=136  Identities=16%  Similarity=0.350  Sum_probs=93.6

Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE--E-----EEEecCCcEEEEECCCCce--eEEEecC--
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--I-----YSAGADGMVCEIDPLTGSL--LGKFRAS--  158 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l-----~s~s~dg~v~iwd~~~~~~--~~~~~~~--  158 (612)
                      ..+..-..++-.|+++|+.+.... -|.. |+-+.+.|+++.  +     +.|-.|+.|.-||++-...  +..-+.|  
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            344444559999999999986663 2433 777777776542  2     3455788999999873321  1111222  


Q ss_pred             --CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          159 --TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       159 --~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                        .....|.+-..+| ++++|+  |.|++||--..+....+++-..+|..+..+.+|++++.++  +.++.+.++.
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence              2367788888777 555555  9999999733333455788899999999999999998875  6778777764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.64  E-value=0.2  Score=40.87  Aligned_cols=102  Identities=17%  Similarity=0.284  Sum_probs=64.8

Q ss_pred             cceeEE-EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            6 IRDILT-SFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         6 V~~l~~-~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      |+++|+ .|.-|| +.|+.|+.|..||||+-  .+.+.++....                   .++++.-..        
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-------------------~v~~L~~~~--------   52 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-------------------KVTSLCSLG--------   52 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-------------------ceEEEEEcC--------
Confidence            455532 244454 57889999999999984  45666664211                   222222221        


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-C--C-CEEEEEecCCcEE
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-H--G-SCIYSAGADGMVC  142 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~--~-~~l~s~s~dg~v~  142 (612)
                        ...++.+..+|+|-+|+-  ...+++....|  .++++.+.. +  | .-|++|-.+|.|-
T Consensus        53 --~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   53 --GGRFAYALANGTVGVYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --CCEEEEEecCCEEEEEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              566999999999999975  44555664333  477776654 2  2 2488888888764

>PHA02713 hypothetical protein; Provisional

Probab=96.61  E-value=0.16  Score=55.40  Aligned_cols=186  Identities=6%  Similarity=-0.001  Sum_probs=90.5

Q ss_pred             CcEEEEEECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCceeE-
Q 007234           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLG-  153 (612)
Q Consensus        86 ~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~-  153 (612)
                      +.+.++|+.+      ..+..||+.++.-. .+..-....-......-+|+..+.||.++     ++..||..+.+-.. 
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            5667777753      23788998887542 11111111111111222577777777654     48889987653221 


Q ss_pred             -EEecCCCCeeEEEECCCCCEEEEeC--C-----------------------eEEEEEcCCCeeEEEEecCCCCEEEEEE
Q 007234          154 -KFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKKMQKFSGHPGAVRFMTF  207 (612)
Q Consensus       154 -~~~~~~~~v~~l~~spdg~~l~~~~--g-----------------------~i~lwd~~~~~~~~~~~~h~~~v~~l~~  207 (612)
                       .+.........+.+  +|++.+.|+  +                       .+..||..+.+-...-+-.......-..
T Consensus       383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence             12211122222222  577777765  1                       3677888776532111111111111122


Q ss_pred             eeCCcEEEEEEcCC-----CeEEEEEcCC-CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC--cEEEE
Q 007234          208 SDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIW  279 (612)
Q Consensus       208 sp~~~~l~s~s~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iw  279 (612)
                      .-+|+..+.||..+     ..+..||..+ .+-.   .+..+..+-.....+.       -+|+..++|+.+|  .+..|
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~-------~~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---LITTTESRLSALHTIL-------HDNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCCee---EccccCcccccceeEE-------ECCEEEEEeeecceeehhhc
Confidence            33566556665211     2467788877 4422   2223332222223332       3568888888887  45555


Q ss_pred             ECCCc
Q 007234          280 YGQNI  284 (612)
Q Consensus       280 d~~~~  284 (612)
                      |..+.
T Consensus       531 d~~~~  535 (557)
T PHA02713        531 NVYTY  535 (557)
T ss_pred             Ccccc
Confidence            54433

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.038  Score=56.67  Aligned_cols=150  Identities=13%  Similarity=0.139  Sum_probs=98.6

Q ss_pred             cCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234           14 SPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        14 spdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g   92 (612)
                      ..+.++|. ++.....++=.|++.|+.+.+++.+.. +...-+.++..-..+                    ....-++|
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql--------------------~~e~TlvG  400 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQL--------------------TSEQTLVG  400 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcc--------------------cccccEEe
Confidence            33444444 445556677889999999999986655 333334443111111                    12334778


Q ss_pred             ECCCcEEEEEcCCCeE-EEEeccCCC----CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEE
Q 007234           93 TGGGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA  166 (612)
Q Consensus        93 s~~g~I~vwd~~~~~~-~~~~~~~h~----~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~  166 (612)
                      -.+..|.-||++-... .....++|.    ..-.|++-..+| ++++||.+|.|++||- .++...+ +.+...+|..|.
T Consensus       401 Ls~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVd  478 (644)
T KOG2395|consen  401 LSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVD  478 (644)
T ss_pred             ecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEE
Confidence            8899999999874322 111222232    234566555555 7999999999999996 5555444 777788999999


Q ss_pred             ECCCCCEEEEeC-CeEEEEEc
Q 007234          167 VSSDGKMLATAA-GQLKTFNC  186 (612)
Q Consensus       167 ~spdg~~l~~~~-g~i~lwd~  186 (612)
                      .+.||+++++.+ ..+.+.++
T Consensus       479 vtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  479 VTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             eeccCcEEEEecccEEEEEEE
Confidence            999999998877 67777665

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.60  E-value=0.13  Score=41.99  Aligned_cols=99  Identities=14%  Similarity=0.276  Sum_probs=63.9

Q ss_pred             eEEEEEec---CC-CEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE
Q 007234          120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       120 V~~l~~sp---~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~  194 (612)
                      |+++++..   +| +.|++||.|..|++|+-  .+.+..+.. ...|++++-...+++.+.-. |+|-+|+-.  ..+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence            66777655   33 46999999999999983  466777764 45788888877766554444 999999753  33344


Q ss_pred             EecCCCCEEEEEEee---CCc-EEEEEEcCCCeEE
Q 007234          195 FSGHPGAVRFMTFSD---NGK-YVLSSAVGERYIA  225 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp---~~~-~l~s~s~~d~~i~  225 (612)
                      .+... .+.++.+..   ||. .|+++- .+|.|-
T Consensus        77 iKSK~-~~~~~~~~D~~gdG~~eLI~Gw-snGkve  109 (111)
T PF14783_consen   77 IKSKN-QVTSMAFYDINGDGVPELIVGW-SNGKVE  109 (111)
T ss_pred             eccCC-CeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence            44333 356665543   332 566665 577664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.18  Score=47.88  Aligned_cols=126  Identities=18%  Similarity=0.335  Sum_probs=84.8

Q ss_pred             CcEEEEEECCCc-EEEEEcCCCeEEEEec-------cCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCC-ce
Q 007234           86 SSLLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTG-SL  151 (612)
Q Consensus        86 ~~~l~~gs~~g~-I~vwd~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~-~~  151 (612)
                      ..-++.+-.-|+ ..++|..+++....+.       .+|.      .|||||.+|+..-.|     |.|-+||.+.+ +.
T Consensus        80 ~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr  153 (366)
T COG3490          80 PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR  153 (366)
T ss_pred             cceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccce
Confidence            345677777777 6788988877654332       2343      589999998876443     78999998754 56


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeCCeEEEE--------------------EcCCCeeEEE--Ee--cCCCCEEEEEE
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAAGQLKTF--------------------NCSDHKKMQK--FS--GHPGAVRFMTF  207 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lw--------------------d~~~~~~~~~--~~--~h~~~v~~l~~  207 (612)
                      +.++..|.-....+.+.+||+.++.+.|-|...                    |..+|.++.+  ++  -+...|..++.
T Consensus       154 vgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~  233 (366)
T COG3490         154 VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI  233 (366)
T ss_pred             ecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence            677888887889999999999999988644443                    3233333222  11  23445777777


Q ss_pred             eeCCcEEEEE
Q 007234          208 SDNGKYVLSS  217 (612)
Q Consensus       208 sp~~~~l~s~  217 (612)
                      -+||+.++-+
T Consensus       234 g~dgtvwfgc  243 (366)
T COG3490         234 GRDGTVWFGC  243 (366)
T ss_pred             CCCCcEEEEE
Confidence            7777655443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.42  E-value=1  Score=50.68  Aligned_cols=206  Identities=15%  Similarity=0.200  Sum_probs=117.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEE-eeeccccc------ccccCCcEE
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL   89 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l   89 (612)
                      +..+..++.++.|.-.|.++|+.+..+.........  +      .+.  .+.-+. |.......      .-...+..|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~--~------~~~--~cRGvay~~~p~~~~~~~~~~~p~~~~~rV  263 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG--R------QHQ--TCRGVSYYDAPAAAAGPAAPAAPADCARRI  263 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc--c------ccc--cccceEEecCCcccccccccccccccCCEE
Confidence            446777788899999999999999988643321100  0      000  000011 11100000      000115678


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeE-------------EEEEec--CCCEEEEEec----------CCcEEEE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI  144 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~-------------~l~~sp--~~~~l~s~s~----------dg~v~iw  144 (612)
                      ++++.||.+.-.|..+|+..+.+..  .+.|.             .+.-.|  .+..++.++.          +|.|+-+
T Consensus       264 ~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       264 ILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            9999999999999999999877632  12110             011112  1335666642          6889999


Q ss_pred             ECCCCceeEEEecCC---------C--------Ce-eEEEECCCCCEEEEeC--------------------CeEEEEEc
Q 007234          145 DPLTGSLLGKFRAST---------K--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC  186 (612)
Q Consensus       145 d~~~~~~~~~~~~~~---------~--------~v-~~l~~spdg~~l~~~~--------------------g~i~lwd~  186 (612)
                      |.++|+.+-.+....         +        .+ ...+++|+..+++.+.                    +.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            999999887765210         0        11 2344555444444321                    35667788


Q ss_pred             CCCeeEEEEecCCCCE---------EEEEEee-CCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          187 SDHKKMQKFSGHPGAV---------RFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       187 ~~~~~~~~~~~h~~~v---------~~l~~sp-~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +||+..-.++.....+         .-+.+.. +|+   .++.++ .+|.+.+.|-++++..
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI  482 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence            8998877665422111         1122332 553   555554 8999999999999755

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.39  E-value=0.29  Score=53.43  Aligned_cols=173  Identities=13%  Similarity=0.105  Sum_probs=92.0

Q ss_pred             EEEcCCCCEEEEEe------CCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234           11 TSFSPALDYFAICS------GDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        11 ~~fspdg~~las~s------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .++||||+.+|..-      .|+  .|.+++.. +.......+  .......|+++   |       ...|+..+.    
T Consensus       355 paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspD---G-------~~lw~v~dg----  417 (591)
T PRK13616        355 AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLD---A-------DAVWVVVDG----  417 (591)
T ss_pred             ceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCC---C-------CceEEEecC----
Confidence            38999999888665      243  45555652 332222222  12444555544   1       122332221    


Q ss_pred             ccCCcEEEEE--ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEE---EECCCCce-e---E
Q 007234           83 KLGSSLLVLG--TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE---IDPLTGSL-L---G  153 (612)
Q Consensus        83 ~~~~~~l~~g--s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~i---wd~~~~~~-~---~  153 (612)
                         .....+.  ...+.+.+.++..+....    .....|..+.|||||..++... ++.|++   -....|.. +   .
T Consensus       418 ---~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~  489 (591)
T PRK13616        418 ---NTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR  489 (591)
T ss_pred             ---cceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence               1122222  234556666776665532    2346799999999999877765 577777   44344541 1   1


Q ss_pred             EEec-CCCCeeEEEECCCCCEEEEeC-C--eEEEEEcCCCeeEEEEec--CCCCEEEEEEee
Q 007234          154 KFRA-STKGISCMAVSSDGKMLATAA-G--QLKTFNCSDHKKMQKFSG--HPGAVRFMTFSD  209 (612)
Q Consensus       154 ~~~~-~~~~v~~l~~spdg~~l~~~~-g--~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp  209 (612)
                      .+.. ....+.++.|.+++.+++... +  .++..++.... ...+.+  ...++..++-++
T Consensus       490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCC
Confidence            1222 223468899999998765444 3  34444544322 112233  245676776665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.14  E-value=1.2  Score=45.56  Aligned_cols=193  Identities=11%  Similarity=0.061  Sum_probs=95.4

Q ss_pred             CcEEEEEE-CCCcEEEEEcCCC----eEEEEecc--CCC----CCeEEEEEecCCCEEEEEec------CCcEEEEECCC
Q 007234           86 SSLLVLGT-GGGDVLALAVSAG----QLKWRLSD--CHP----GGVSAISFATHGSCIYSAGA------DGMVCEIDPLT  148 (612)
Q Consensus        86 ~~~l~~gs-~~g~I~vwd~~~~----~~~~~~~~--~h~----~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~  148 (612)
                      .++|++.+ .++.|+|+|+.+.    +..+.+..  -+.    +.-..+..-|+|+.++++-.      -|-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            44555555 7788999999853    22322211  011    22334445578888888632      24688889888


Q ss_pred             CceeEEEecCCC---CeeEEEECCCCCEEEEeC----------------------CeEEEEEcCCCeeEEEEecCC--CC
Q 007234          149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA  201 (612)
Q Consensus       149 ~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~----------------------g~i~lwd~~~~~~~~~~~~h~--~~  201 (612)
                      .+....+.....   .-+..-|.|..+.+++..                      .++.+||+.+.+.++++.--.  ..
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            888887765332   345677888888888864                      269999999999999986432  23


Q ss_pred             EEEEEEe--eCCcEEEEEEcCCCeEEEEEc-CCCccccceeeEeecCC-----------------ceeEEeEEecCCccC
Q 007234          202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD  261 (612)
Q Consensus       202 v~~l~~s--p~~~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~  261 (612)
                      ...+.|.  |+..+=++++.-..+|..|-- ..++-. +..+..+...                 ...++-+..+     
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-----  320 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-----  320 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence            5577776  444544444334555655544 333211 2222222211                 1223334444     


Q ss_pred             CCCcEEEEEec-CCcEEEEECCCc
Q 007234          262 DAGLYVLAISE-TGVCYIWYGQNI  284 (612)
Q Consensus       262 ~~~~~l~t~s~-dg~i~iwd~~~~  284 (612)
                      .|.++|..++. +|.|+.||+...
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCEEEEEcccCCcEEEEecCCC
Confidence            78888888876 899999998654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.79  E-value=0.26  Score=45.51  Aligned_cols=91  Identities=20%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             EEEeeecccccccccCCcEEEEEECCCcEEEEE--cCCCeE-----EEEeccC---CCCCeEEEEEecCCCEEEEEecCC
Q 007234           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA--VSAGQL-----KWRLSDC---HPGGVSAISFATHGSCIYSAGADG  139 (612)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd--~~~~~~-----~~~~~~~---h~~~V~~l~~sp~~~~l~s~s~dg  139 (612)
                      .+.|....        ..+.++-+.+-+|.-||  ..+|..     +..+.+.   ..-.--+++...+|++.+++-..+
T Consensus       162 gl~Wd~d~--------K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~  233 (310)
T KOG4499|consen  162 GLAWDSDA--------KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG  233 (310)
T ss_pred             cccccccC--------cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence            46677443        45677788888897787  666643     2222110   111123455566788888888888


Q ss_pred             cEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234          140 MVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                      +|...|..+|+.+.+++-....++|++|-
T Consensus       234 ~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  234 TVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            99999999999999999888899999996

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.77  E-value=0.4  Score=51.98  Aligned_cols=98  Identities=16%  Similarity=0.209  Sum_probs=71.8

Q ss_pred             EEEEECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEEecCCcEEEEECC---------CCceeEEE-
Q 007234           89 LVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPL---------TGSLLGKF-  155 (612)
Q Consensus        89 l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~-  155 (612)
                      +++...+++ +.|||...+.......-...+.|.++.|.  |+|+.+++.|..+.|.++--.         +..+++.+ 
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~  122 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID  122 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence            444455555 99999999886544332457899999995  589999999999999998532         11233433 


Q ss_pred             -ecCC-CCeeEEEECCCCCEEEEeCCeEEEEEc
Q 007234          156 -RAST-KGISCMAVSSDGKMLATAAGQLKTFNC  186 (612)
Q Consensus       156 -~~~~-~~v~~l~~spdg~~l~~~~g~i~lwd~  186 (612)
                       ..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus       123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence             3333 588999999999888888899999974

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=1.7  Score=41.90  Aligned_cols=156  Identities=11%  Similarity=0.039  Sum_probs=99.8

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                      .+.+.|++.         .+.+++..+...-.|+=-.+|+.+.++.-..-...-++.|..+|++.++--.++.+.++.+.
T Consensus        88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            556667665         56677777777777777788888877654334456678888888877777788888888776


Q ss_pred             CCceeEEE----------ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--e-EEEEecC-------CCCEEEE
Q 007234          148 TGSLLGKF----------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--K-MQKFSGH-------PGAVRFM  205 (612)
Q Consensus       148 ~~~~~~~~----------~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~-~~~~~~h-------~~~v~~l  205 (612)
                      .+..+..+          .....+...++|+|..+.+..+-  .-+.||.+....  . +.....+       -..|.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            55222111          11245788999999888888776  545555443222  1 1111111       1346778


Q ss_pred             EEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          206 TFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       206 ~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .|.+....+++-|.+++.+.-.|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            888655555555557888777776554

>PHA02713 hypothetical protein; Provisional

Probab=95.52  E-value=0.47  Score=51.87  Aligned_cols=141  Identities=8%  Similarity=0.057  Sum_probs=73.2

Q ss_pred             CcEEEEEECCCc-----EEEEEcCCCeEEEEeccCCC-CCeEEEEEecCCCEEEEEecCC--------------------
Q 007234           86 SSLLVLGTGGGD-----VLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGADG--------------------  139 (612)
Q Consensus        86 ~~~l~~gs~~g~-----I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~s~dg--------------------  139 (612)
                      +.+.++|+.+|.     +..||+.+++-...-.-.+. .....+.  -+|+..+.||.++                    
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence            667778877643     88899988754311100011 1111222  2577777776542                    


Q ss_pred             ---cEEEEECCCCcee--EEEecCCCCeeEEEECCCCCEEEEeC--C------eEEEEEcCC-Cee--EEEEecCCCCEE
Q 007234          140 ---MVCEIDPLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--G------QLKTFNCSD-HKK--MQKFSGHPGAVR  203 (612)
Q Consensus       140 ---~v~iwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~~~~--g------~i~lwd~~~-~~~--~~~~~~h~~~v~  203 (612)
                         .+..||..+.+-.  ..+....... +++. -+|++.+.|+  +      .+..||..+ .+-  +..++.......
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence               4777887765432  1221111111 2222 2466666665  1      367899887 432  333332222222


Q ss_pred             EEEEeeCCcEEEEEEcCCC--eEEEEEcCCCc
Q 007234          204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVK  233 (612)
Q Consensus       204 ~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~  233 (612)
                      ...  -+|+..+.|| .++  .+..||..+.+
T Consensus       508 ~~~--~~~~iyv~Gg-~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        508 TIL--HDNTIMMLHC-YESYMLQDTFNVYTYE  536 (557)
T ss_pred             eEE--ECCEEEEEee-ecceeehhhcCccccc
Confidence            222  2577777776 577  67777777765

>PHA03098 kelch-like protein; Provisional

Probab=95.37  E-value=0.86  Score=49.78  Aligned_cols=143  Identities=8%  Similarity=0.050  Sum_probs=70.0

Q ss_pred             CcEEEEEECCC------cEEEEEcCCCeEEEEeccCC--CCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCcee
Q 007234           86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLL  152 (612)
Q Consensus        86 ~~~l~~gs~~g------~I~vwd~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~~  152 (612)
                      +.++++|+.++      .+..||+.+++.. .+..-.  ......+  .-+++.++.||.+     ..+..||..+++-.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            55666776543      4788998887653 221111  1111222  2256667777755     35778887765432


Q ss_pred             E--EEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC-
Q 007234          153 G--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (612)
Q Consensus       153 ~--~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d-  221 (612)
                      .  .+....... +++. -++++.+.|+        +.+..||..+++-...-..........+...++..++.||... 
T Consensus       372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence            1  111111111 2222 2566666665        2588999887653221110001101112234566555555211 


Q ss_pred             ------CeEEEEEcCCCc
Q 007234          222 ------RYIALWRTDGVK  233 (612)
Q Consensus       222 ------~~i~vwd~~~~~  233 (612)
                            ..+.+||..+.+
T Consensus       450 ~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCCcccceEEEecCCCCc
Confidence                  237788877664

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.31  E-value=0.056  Score=49.71  Aligned_cols=61  Identities=15%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCC-CCeEEEEEecCCCEEEEE--ecCCcEEEEECC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSA--GADGMVCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~--s~dg~v~iwd~~  147 (612)
                      +.+..++..+|.|+.|++.-++.+... ..|+ .++..+..+..++.+..+  |.|..++.|++.
T Consensus       114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  114 SSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            457889999999999999988887555 3466 455555555555555555  566666666654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.30  E-value=0.07  Score=59.35  Aligned_cols=100  Identities=17%  Similarity=0.210  Sum_probs=71.6

Q ss_pred             CCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEE
Q 007234          128 HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (612)
Q Consensus       128 ~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~  204 (612)
                      .+-.++.|+..|.|-..|+... .+...=....++|++++|+.+|+.++.|-  |.|.+||+..++.++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3446888888899988887543 11111122346999999999999999987  89999999999999999888888777


Q ss_pred             EEEe---eCCcEEEEEEcCCCeEEEEEcC
Q 007234          205 MTFS---DNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       205 l~~s---p~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      +-+.   .++..++++ ...|.  +|.+.
T Consensus       178 vi~v~~t~~nS~llt~-D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTS-DTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEEeCCCcEEEEc-cCCCc--eEEEE
Confidence            6543   445555554 34554  67653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.15  E-value=3.8  Score=40.64  Aligned_cols=153  Identities=16%  Similarity=0.183  Sum_probs=76.3

Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEE-cCCCeeE
Q 007234          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN-CSDHKKM  192 (612)
Q Consensus       115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd-~~~~~~~  192 (612)
                      .-.+.+..+..+++|+++++++.-....-||.-...-...-+.....|.++.|.|++.+.+.+. |.|+.=+ ....+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence            3456788898999999888876555556787432211122222456899999999998877666 8888877 2222222


Q ss_pred             EE--Ee--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee-cCCceeEEeEEecCCccCCCCcEE
Q 007234          193 QK--FS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV  267 (612)
Q Consensus       193 ~~--~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  267 (612)
                      ..  .+  ...-.+..++|.+++...++++  .|.+ +...+.++.=  ...... .-+.....+.++.     +  ..-
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW--~~~~~~~~~~~n~~~i~f~~-----~--~~g  289 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTW--QKDRVGENVPSNLYRIVFVN-----P--DKG  289 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS---EE-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccc--eECccccCCCCceEEEEEcC-----C--Cce
Confidence            11  11  1122378899999887777654  5654 3455555421  111111 1244555555554     3  445


Q ss_pred             EEEecCCcEEEE
Q 007234          268 LAISETGVCYIW  279 (612)
Q Consensus       268 ~t~s~dg~i~iw  279 (612)
                      ++.+.+|.|.-|
T Consensus       290 f~lG~~G~ll~~  301 (302)
T PF14870_consen  290 FVLGQDGVLLRY  301 (302)
T ss_dssp             EEE-STTEEEEE
T ss_pred             EEECCCcEEEEe
Confidence            566778877655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.08  E-value=0.051  Score=36.98  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=28.4

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~   39 (612)
                      .++|.  +++|+|...+||.|..+|.|.|+.+ +++.
T Consensus        11 ~~~v~--~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVS--CMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEE--EEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            35665  5599999999999999999999998 5554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.08  E-value=0.068  Score=49.16  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~  163 (612)
                      +.-+++|+.+|.|.+|+...-.........-...| ..+.--.++.+.++++.||.|+.|++..++.+...-.|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            56799999999999999873211111111111222 223223355678889999999999999888877766666 3444


Q ss_pred             EEEECCCCCEEEEe--C--CeEEEEEcC
Q 007234          164 CMAVSSDGKMLATA--A--GQLKTFNCS  187 (612)
Q Consensus       164 ~l~~spdg~~l~~~--~--g~i~lwd~~  187 (612)
                      ....+..++.++.+  +  ..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444555544  2  355566554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.95  E-value=4.3  Score=40.24  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             CcEEEEEECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE-CCCCceeEE----EecCC
Q 007234           86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLGK----FRAST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd-~~~~~~~~~----~~~~~  159 (612)
                      +.+++++ ..|. ..-||.-...-...- ......|..+.|.|++...+.+ ..|.|+.=+ ....+.-..    +....
T Consensus       156 G~~vavs-~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~  232 (302)
T PF14870_consen  156 GRYVAVS-SRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG  232 (302)
T ss_dssp             S-EEEEE-TTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred             CcEEEEE-CcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence            5555555 5555 567887543222111 2356889999999998765544 888888877 222222111    11122


Q ss_pred             CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          160 KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      ..+..++|.+++...++|+ |.+ +...+.|+.-.+-+   .-....+.+.|.++.+-++.+  .+|.+.-|
T Consensus       233 ~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~  301 (302)
T PF14870_consen  233 YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY  301 (302)
T ss_dssp             S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred             eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence            3588999999999999888 544 45566666544443   234568899998877766664  58887655

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.93  E-value=4  Score=39.77  Aligned_cols=210  Identities=14%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCcEEEEECC------CC-cEEEEeecc-----CCccccccccccccccccccceeEEEe
Q 007234            6 IRDILTSFSPALDYFAICSGDARIKIWDTL------KG-QVQTEFADI-----ASTETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~dg~i~iwd~~------~~-~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      |+.+-++|+|.+.+-++....+...+||..      .. .++-++...     ....+.++|+..   .         .|
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~---~---------~F   90 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS---D---------TF   90 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC---C---------ce
Confidence            344566999999877777778899999986      11 122222211     112333333322   0         00


Q ss_pred             eecccccccccCCcEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCCCe-EEEEEec--CCCEEEEEe-cCCcEEEE
Q 007234           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGV-SAISFAT--HGSCIYSAG-ADGMVCEI  144 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~-----~~~~~~~h~~~V-~~l~~sp--~~~~l~s~s-~dg~v~iw  144 (612)
                       .....  .+.....++.++.+|+|.-|...-+..     ...+.....+.| ..+++..  .+.+|+.+. ..++|.++
T Consensus        91 -~vt~~--g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF  167 (336)
T TIGR03118        91 -VVSGE--GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF  167 (336)
T ss_pred             -EEcCC--CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence             00000  001145689999999999999754333     112212222344 3556553  356677665 57889999


Q ss_pred             ECCCCceeEE---EecCC-----C-----------CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCC
Q 007234          145 DPLTGSLLGK---FRAST-----K-----------GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGA  201 (612)
Q Consensus       145 d~~~~~~~~~---~~~~~-----~-----------~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~  201 (612)
                      |-. .+++..   |....     .           -|+...-.++++.=+.|.  |-|-+||+ .++.++++.  +.-..
T Consensus       168 d~~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNa  245 (336)
T TIGR03118       168 KGS-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNA  245 (336)
T ss_pred             cCc-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccC
Confidence            843 222111   11110     0           111122223332222222  78999997 567777773  22234


Q ss_pred             EEEEEEee------CCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          202 VRFMTFSD------NGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       202 v~~l~~sp------~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      -+.|+..|      .|. |+.+-..||+|..||..++.
T Consensus       246 PWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       246 PWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCc
Confidence            45666655      344 45566789999999998776

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA03098 kelch-like protein; Provisional

Probab=94.91  E-value=1.3  Score=48.36  Aligned_cols=143  Identities=13%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCCceeEE
Q 007234           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK  154 (612)
Q Consensus        86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~~~~~~  154 (612)
                      +.+++.|+.++     ++..||+.+++-...-...+...-.+++ .-+++..+.||.+      ..+..||..+++-...
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            66777777653     3788998876543111001111111222 2256666666632      4588899876543221


Q ss_pred             --EecCCCCeeEEEECCCCCEEEEeC-C---------eEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          155 --FRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       155 --~~~~~~~v~~l~~spdg~~l~~~~-g---------~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                        +...... .+++ ..++++.+.|+ .         .+.+||..+++-...  +....... ++ ..-+++.++.+|..
T Consensus       422 ~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCc
Confidence              1111111 1222 23566666665 1         388899887653221  11111111 11 12356666666522


Q ss_pred             ----CCeEEEEEcCCCc
Q 007234          221 ----ERYIALWRTDGVK  233 (612)
Q Consensus       221 ----d~~i~vwd~~~~~  233 (612)
                          .+.+.+||..+..
T Consensus       498 ~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        498 YEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceeEEEeCCCCE
Confidence                1357777766653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.88  E-value=2  Score=39.75  Aligned_cols=137  Identities=13%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             cEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecC---C---cEEEE---ECC--CCceeE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD---G---MVCEI---DPL--TGSLLG  153 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g---~v~iw---d~~--~~~~~~  153 (612)
                      +.++++...+.|.+|++.+..  ...++.  .-+.|..+.++..|++++|-=.+   .   .+|+|   +..  ..++++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            567777888889999998433  344442  45889999999999999986322   2   55664   222  112222


Q ss_pred             -EEec---------------------CCCCeeEEEECC-CCCEEEEeCCeEEEEEcCCCee-E-----EEEe----c-CC
Q 007234          154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK-M-----QKFS----G-HP  199 (612)
Q Consensus       154 -~~~~---------------------~~~~v~~l~~sp-dg~~l~~~~g~i~lwd~~~~~~-~-----~~~~----~-h~  199 (612)
                       .+-+                     ...++.+++..| .|++++...+.+.+|.++.... .     ..|.    . |.
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence             1111                     123667888888 5666655558999998754432 1     1111    1 11


Q ss_pred             C-CEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          200 G-AVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       200 ~-~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      + ....++|.  +.|++..+  +..+++..+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence            1 13445554  45777664  566777654

>PHA02790 Kelch-like protein; Provisional

Probab=94.79  E-value=2.2  Score=45.84  Aligned_cols=139  Identities=8%  Similarity=-0.075  Sum_probs=66.3

Q ss_pred             CcEEEEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEE-EEEecCCCEEEEEecCC---cEEEEECCCCceeEE--Eec
Q 007234           86 SSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADG---MVCEIDPLTGSLLGK--FRA  157 (612)
Q Consensus        86 ~~~l~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~s~dg---~v~iwd~~~~~~~~~--~~~  157 (612)
                      +.+.++|+.++  .+..||+.+++-.. ... -..+... ....-+|+..+.||.++   .+..||..+.+-...  +..
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~-~~~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVN-MPS-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEE-CCC-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            56667777543  48889987765431 111 1111111 11222576677777553   477888776543221  111


Q ss_pred             CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCC-----CeEEEEEcC
Q 007234          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYIALWRTD  230 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d-----~~i~vwd~~  230 (612)
                      ..... +++ .-+|++.+.| |.+.+||.++++-..  .+....... +++ .-+|+..+.|| .+     ..+.+||..
T Consensus       397 ~r~~~-~~~-~~~~~IYv~G-G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG-~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        397 PHYKS-CAL-VFGRRLFLVG-RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGG-FYRGSYIDTIEVYNNR  470 (480)
T ss_pred             ccccc-eEE-EECCEEEEEC-CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECC-cCCCcccceEEEEECC
Confidence            11111 222 2245444444 567789988765432  121111111 222 23566666665 23     245566655


Q ss_pred             CC
Q 007234          231 GV  232 (612)
Q Consensus       231 ~~  232 (612)
                      +.
T Consensus       471 ~~  472 (480)
T PHA02790        471 TY  472 (480)
T ss_pred             CC
Confidence            54

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.78  E-value=1.5  Score=45.30  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEECCCC-----cee---EEEecC----CCCeeEEEECCCCCEEEEeC--------
Q 007234          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLL---GKFRAS----TKGISCMAVSSDGKMLATAA--------  178 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-----~~~---~~~~~~----~~~v~~l~~spdg~~l~~~~--------  178 (612)
                      ...++++.++|  |++++.....++.|....     +..   ..+...    ......++|.|||.+.++-+        
T Consensus        73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence            45778888777  444444433333344211     111   112221    23467899999988766433        


Q ss_pred             -------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          179 -------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       179 -------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                                   |.|.-+|..+++....-.++. ....++|+|+|+++++-
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEc
Confidence                         234455555444322223333 24678999999876653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.55  E-value=4.9  Score=38.97  Aligned_cols=139  Identities=13%  Similarity=0.108  Sum_probs=76.3

Q ss_pred             EEEEcCCCCEEEEEe--C-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           10 LTSFSPALDYFAICS--G-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        10 ~~~fspdg~~las~s--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      ..+.|+||+.+|...  . ...+.++...  ....... .........|..+                           +
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~---------------------------g   77 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPD---------------------------G   77 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCC---------------------------C
Confidence            449999999887766  3 3345555443  3222221 1112222223222                           4


Q ss_pred             cEEEEEECCCcEEEEE-cCCCeEEE-Eec-cCCCCCeEEEEEecCCCEEEEEe---cCCcEEEEECC---CC------ce
Q 007234           87 SLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------SL  151 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd-~~~~~~~~-~~~-~~h~~~V~~l~~sp~~~~l~s~s---~dg~v~iwd~~---~~------~~  151 (612)
                      ...++...+....++. ..++.... .+. ..-...|+++.+||||..++...   .++.|.+--+.   .+      ..
T Consensus        78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~  157 (253)
T PF10647_consen   78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP  157 (253)
T ss_pred             CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence            5555555555555553 33333221 111 11112899999999999877655   35667666443   22      11


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeC
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAA  178 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~  178 (612)
                      ..........+..+.|.+++.+++.+.
T Consensus       158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  158 RRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             eEecccccCcceeeeecCCCEEEEEeC
Confidence            122222345789999999999888776

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.50  E-value=0.038  Score=60.11  Aligned_cols=117  Identities=15%  Similarity=0.226  Sum_probs=74.5

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEE-----------EecCCCEEEEEe
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSAG  136 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~-----------~sp~~~~l~s~s  136 (612)
                      ..-+.|.+.-..      ..++..+..+|+|++.++.+...  .+..+|...+++++           .+|||..|+.++
T Consensus       183 ~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~  254 (1283)
T KOG1916|consen  183 PQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI  254 (1283)
T ss_pred             cceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence            356677776543      55677788888888877765543  34455776665543           589999999999


Q ss_pred             cCCcEEEEECC-----CCceeEEEecCCC-CeeEEEECCCC---------CEEEEeC---CeEEEEEcCCCeeE
Q 007234          137 ADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM  192 (612)
Q Consensus       137 ~dg~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~spdg---------~~l~~~~---g~i~lwd~~~~~~~  192 (612)
                      .||.++.|.+.     ..+++..++.|.+ +-.|.-++.+.         .+++++.   ..+++|.....+|+
T Consensus       255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            99998888653     3356667777763 33333344322         2344444   46788876655554

>PHA02790 Kelch-like protein; Provisional

Probab=94.38  E-value=3.2  Score=44.53  Aligned_cols=180  Identities=6%  Similarity=-0.092  Sum_probs=84.7

Q ss_pred             CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEecC--CcEEEEECCCCceeE--EE
Q 007234           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLG--KF  155 (612)
Q Consensus        86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~d--g~v~iwd~~~~~~~~--~~  155 (612)
                      +.++++|+.++     .+..||+.++.....- .-..... .+++ .-+|...+.||.+  .++..||..+++-..  .+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            55667776543     3778999887643211 1111111 1222 2356666777653  458888876553221  12


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecCCCCE-EEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          156 RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAV-RFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      .........+  .-+|++.+.|+     ..+..||.++.+-...-. -..+. ...+..-+|+..+.|    |.+.+||.
T Consensus       350 ~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~G----G~~e~ydp  422 (480)
T PHA02790        350 LKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLVG----RNAEFYCE  422 (480)
T ss_pred             CCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEEC----CceEEecC
Confidence            1111122222  23677777776     357788887765322111 11111 111223345544443    24677888


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~  284 (612)
                      .+.+-.   .+..+..+......+.       -+|+..+.|+.+     ..+..||..+.
T Consensus       423 ~~~~W~---~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        423 SSNTWT---LIDDPIYPRDNPELII-------VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCcEe---EcCCCCCCccccEEEE-------ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            765422   2222222222222222       345666777654     24556665443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.25  E-value=0.14  Score=34.83  Aligned_cols=35  Identities=23%  Similarity=0.144  Sum_probs=30.3

Q ss_pred             CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (612)
Q Consensus       116 h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~  151 (612)
                      ....|..++|+|....++.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3467999999999999999999999999998 5543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.21  E-value=6.5  Score=40.54  Aligned_cols=202  Identities=18%  Similarity=0.185  Sum_probs=111.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCC-CCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~  163 (612)
                      +..+.+++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.++.++.+|..+|+.+-...... ..+.
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            5667888999999999999999877553222 22334434444665 7888889999999998999888877655 1122


Q ss_pred             EEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCC---CCEEEEEEeeCCcEEEEEEcC--CCeEEEEEcCCCccccc
Q 007234          164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA  237 (612)
Q Consensus       164 ~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~l~s~s~~--d~~i~vwd~~~~~~~~~  237 (612)
                      .-.+-.++..++... |.++-.|..+++..-......   ..+..--...++. ++.+. .  ++.+.-.|..++...-.
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~-~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGS-DGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEec-CCCcceEEEEEccCCcEeee
Confidence            223333555555534 888888888887765543221   1111111122333 33332 3  44555566666553310


Q ss_pred             e-eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      . ........... ....+....+.-+ .-+..++.+|.+...|..+++.+.....
T Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         225 QKVSQTIGRTAIS-TTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeecccCccccc-ccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            0 00111110000 0001110000011 2336667788888889999988865554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.21  E-value=5.7  Score=38.46  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=70.2

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEE-CCCCceeE-EEecC--CCCeeEEEECCCCCEEEEeC-----CeEEEEEcC-
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS-  187 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~-  187 (612)
                      ..+....|++++...+....+...+++. ...++... .+...  ...|..+.+||||..++...     +.|++--+. 
T Consensus        66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen   66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            3788889999976665555566666663 33333222 22222  12799999999999887644     567666543 


Q ss_pred             --CC------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE-EEcCC
Q 007234          188 --DH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDG  231 (612)
Q Consensus       188 --~~------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v-wd~~~  231 (612)
                        .+      ..+.........+..+.|.+++.+++.+...+..+.. .....
T Consensus       146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence              22      1122222335678999999999988777655554444 44433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.20  E-value=1.9  Score=47.08  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             CcEEEEEECCCc-----EEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCC------cEEEEECCCCceeE
Q 007234           86 SSLLVLGTGGGD-----VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADG------MVCEIDPLTGSLLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~-----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg------~v~iwd~~~~~~~~  153 (612)
                      +.+.++|+.+|.     |-.||+.+.+-...-  .......+..... +|...+.||.++      +|..||..+++-..
T Consensus       381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL  458 (571)
T ss_pred             CEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence            778889999876     788998887653211  1222333333222 677777777554      57788887764322


Q ss_pred             --EEecCCCCeeEEEECCCCCEEEEeC--C-----eEEEEEcCCCeeEEEEecCCCCEEEEEEe-eCCcEEEEEEcCCC-
Q 007234          154 --KFRASTKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFS-DNGKYVLSSAVGER-  222 (612)
Q Consensus       154 --~~~~~~~~v~~l~~spdg~~l~~~~--g-----~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~s~~d~-  222 (612)
                        .+........ ++.- ++.+.+.|+  +     +|..||..+.+.... ..-..+....... -++...+.+| .|+ 
T Consensus       459 ~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG-~~~~  534 (571)
T KOG4441|consen  459 IAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGG-FDGN  534 (571)
T ss_pred             cCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEec-ccCc
Confidence              2222222222 3332 566777776  2     488899888764332 1112222222222 2455555555 565 


Q ss_pred             ----eEEEEEcCCCc
Q 007234          223 ----YIALWRTDGVK  233 (612)
Q Consensus       223 ----~i~vwd~~~~~  233 (612)
                          +|..||..+.+
T Consensus       535 ~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  535 NNLNTVECYDPETDT  549 (571)
T ss_pred             cccceeEEcCCCCCc
Confidence                56677666554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.12  E-value=6  Score=44.47  Aligned_cols=174  Identities=10%  Similarity=0.065  Sum_probs=106.7

Q ss_pred             EEEEEcCCCeEEEEeccCCC---CCeEEEEEecC-CCEEEEEe----------cCCcEEEEECCCCceeEEEecC--CCC
Q 007234           98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS--TKG  161 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~h~---~~V~~l~~sp~-~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~--~~~  161 (612)
                      ++++|-++-+.+....-...   ..|.++.|..| +.++++|.          ..|.|.++.+..++.++....+  .+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            67777777666533321112   23555568877 56666664          2467778777664433333222  344


Q ss_pred             eeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      +.++..- +|+++|.-+..|++|++.+.+.++.-..|..++..+...-.|..++.+. --+.+.+...+..+..  ....
T Consensus       832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD-lm~Sitll~y~~~eg~--f~ev  907 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD-LMRSITLLQYKGDEGN--FEEV  907 (1096)
T ss_pred             eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee-ccceEEEEEEeccCCc--eEEe
Confidence            5555443 6888887778999999999977777778889999999998899888876 4666666554433311  0122


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .-+-....+..+.+-      ++...+.+..+|.+.+-..
T Consensus       908 ArD~~p~Wmtaveil------~~d~ylgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEIL------DDDTYLGAENSGNLFTVRK  941 (1096)
T ss_pred             ehhhCccceeeEEEe------cCceEEeecccccEEEEEe
Confidence            223334444444443      3455566667777777643

>PRK10115 protease 2; Provisional

Probab=94.12  E-value=12  Score=41.99  Aligned_cols=188  Identities=8%  Similarity=0.019  Sum_probs=93.8

Q ss_pred             EEEcCCCCEEEEEeC-C----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           11 TSFSPALDYFAICSG-D----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        11 ~~fspdg~~las~s~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      +.+||||++||.+.. +    ..|++-|+.+|..+...-                    ......+.|.+.+        
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--------------------~~~~~~~~w~~D~--------  183 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--------------------DNVEPSFVWANDS--------  183 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--------------------cCcceEEEEeeCC--------
Confidence            388999999987643 2    358888888775332110                    0011236775542        


Q ss_pred             CcEEEEEECC-----CcEEEEEcCCCe--EEEEeccCCCCCeE-EEEEecCCCEEEEEec---CCcEEEEECC--CCcee
Q 007234           86 SSLLVLGTGG-----GDVLALAVSAGQ--LKWRLSDCHPGGVS-AISFATHGSCIYSAGA---DGMVCEIDPL--TGSLL  152 (612)
Q Consensus        86 ~~~l~~gs~~-----g~I~vwd~~~~~--~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~---dg~v~iwd~~--~~~~~  152 (612)
                      ..++++....     ..|+.+++.++.  ...-+ ........ ....+.++++++..+.   ++.+.+++..  .+...
T Consensus       184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~-~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~  262 (686)
T PRK10115        184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVY-EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF  262 (686)
T ss_pred             CEEEEEEecCCCCCCCEEEEEECCCChhHCeEEE-eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence            3344443322     248889998873  22122 22222233 3333447887655443   4578888842  34432


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEecC-C-CCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      ..+.........+. +..+.+.+...     ..|...++........+-.+ . ..+..+.+.  +.+|+.....++.-+
T Consensus       263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~  339 (686)
T PRK10115        263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS  339 (686)
T ss_pred             EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence            23332223223332 33333333333     24544455522222334344 3 367777776  334555444677666


Q ss_pred             EEEcC
Q 007234          226 LWRTD  230 (612)
Q Consensus       226 vwd~~  230 (612)
                      ++-+.
T Consensus       340 l~~~~  344 (686)
T PRK10115        340 LRQIN  344 (686)
T ss_pred             EEEEc
Confidence            65554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.08  E-value=13  Score=42.01  Aligned_cols=132  Identities=11%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeC--Cc
Q 007234          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDN--GK  212 (612)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~--~~  212 (612)
                      ..||+++-.  .....+... ..++..+.+.+...++.++  +.+...++..+. ++...  .-...|.|+.++|-  ++
T Consensus       470 ~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~  545 (1096)
T KOG1897|consen  470 NSIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAP  545 (1096)
T ss_pred             ccEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCC
Confidence            346666633  233444433 3344444444444554444  445445555443 33222  23467999999974  33


Q ss_pred             E---EEEEEcCCCeEEEEEc-CCCccccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          213 Y---VLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       213 ~---l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .   ++..|.++..+.+--. ......   +...+...  ...+-...+.     .|..+|.++..||.+..|-+.
T Consensus       546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~~---~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  546 NKSRLLAVGLWSDISMILTFLPDLILI---THEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             CcceEEEEEeecceEEEEEECCCccee---eeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEEE
Confidence            2   4444457776554432 332221   11112111  1222233343     568999999999988776543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.96  E-value=4.6  Score=39.06  Aligned_cols=116  Identities=7%  Similarity=0.122  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC-CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee
Q 007234          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (612)
Q Consensus       115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~  191 (612)
                      +-...|.++.|+|+.+.|++......-.+|=...|+.++++.-. -.....|.+..+|+++++--  +.++++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44456999999999999998887777777766789998886532 22456788887777766655  7888877665422


Q ss_pred             EE-----EEe----cC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          192 MQ-----KFS----GH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       192 ~~-----~~~----~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      +.     +++    .+ +...-.++|.|.+..|+.+- +-+=+.||.+..
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~  211 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQ  211 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEec
Confidence            11     111    12 44567899999888787764 455566666553

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.76  E-value=1.4  Score=45.43  Aligned_cols=152  Identities=13%  Similarity=0.110  Sum_probs=93.8

Q ss_pred             EEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           12 SFSPALDYFAI-CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        12 ~fspdg~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      -+..|.++|.. |+....+.-.|++-|+.+.+++.+...  -+.|.+...-.                    +-....-+
T Consensus       474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~--------------------qmt~eqtl  531 (776)
T COG5167         474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQ--------------------QMTDEQTL  531 (776)
T ss_pred             eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHH--------------------hcCccceE
Confidence            45556666654 444567777899999999999866543  22333321100                    00133346


Q ss_pred             EEECCCcEEEEEcCCCe-EEEEeccCCCCCeEEEEEe----cCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           91 LGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISFA----THGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +|-.+..|.-.|++-.. .+...  .....++--.|+    ..+.+++.||.-|-|++||--.-+...-+.+....|..+
T Consensus       532 vGlS~~svFrIDPR~~gNKi~v~--esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~i  609 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKIKVV--ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHI  609 (776)
T ss_pred             EeecccceEEecccccCCceeee--eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeee
Confidence            67777777777765322 21111  111122222222    234589999999999999954333344466667789999


Q ss_pred             EECCCCCEEEEeC-CeEEEEEcC
Q 007234          166 AVSSDGKMLATAA-GQLKTFNCS  187 (612)
Q Consensus       166 ~~spdg~~l~~~~-g~i~lwd~~  187 (612)
                      ..+.+|+++++.+ ..+.+-|++
T Consensus       610 dvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         610 DVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             EeecCCcEEEEeecceEEEEecc
Confidence            9999999998887 888888864

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.54  E-value=3.9  Score=45.75  Aligned_cols=35  Identities=9%  Similarity=0.009  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEEecC---CCEEEEEecCCcEEEEECCCC
Q 007234          115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus       115 ~h~~~V~~l~~sp~---~~~l~s~s~dg~v~iwd~~~~  149 (612)
                      .+...|..+.|+|.   +.+|+.=..|+++|+||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            35568899999995   478888889999999999654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=6.4  Score=36.08  Aligned_cols=171  Identities=13%  Similarity=0.092  Sum_probs=96.4

Q ss_pred             CCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234           17 LDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (612)
Q Consensus        17 g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~   94 (612)
                      |.++.+.+.  ...|++||+.+|+.+.+-+-..    ...|.         ...+             +.++.+-...-.
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~Fg---------EGit-------------~~gd~~y~LTw~  109 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFG---------EGIT-------------KLGDYFYQLTWK  109 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCC----ccccc---------ccee-------------eccceEEEEEec
Confidence            445555554  3479999999999876543210    01111         1111             111344556667


Q ss_pred             CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC--CC---CeeEEEECC
Q 007234           95 GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TK---GISCMAVSS  169 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~---~v~~l~~sp  169 (612)
                      +|.-..||..+-+++.++.  ..+.=++++.  |++.|+.++...+++.-|.++.....++...  ..   .++-+.|- 
T Consensus       110 egvaf~~d~~t~~~lg~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-  184 (262)
T COG3823         110 EGVAFKYDADTLEELGRFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-  184 (262)
T ss_pred             cceeEEEChHHhhhhcccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence            7888899999888876653  3344455543  5666888776777887787665444433221  11   22334443 


Q ss_pred             CCCEEEEeC--CeEEEEEcCCCeeEEEEe------------cCCCCEEEEEEeeCCcEEEEEE
Q 007234          170 DGKMLATAA--GQLKTFNCSDHKKMQKFS------------GHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~------------~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ||...|-.=  ..|...|.++|+.+..+.            .|..-.+.|++.|++..++..|
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            454444322  455556666776654432            2344567889988875555544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.65  E-value=0.52  Score=53.11  Aligned_cols=151  Identities=7%  Similarity=-0.054  Sum_probs=93.1

Q ss_pred             EEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        11 ~~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +...+|+...++...  +-.|..||+++-..-.....     .-+.++..  .-....-..|+.|.+.-        ...
T Consensus       106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~-----~pl~~s~t--s~ek~vf~~~~~wnP~v--------p~n  170 (1405)
T KOG3630|consen  106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT-----VPLKNSAT--SFEKPVFQLKNVWNPLV--------PLN  170 (1405)
T ss_pred             EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc-----cccccccc--hhccccccccccccCCc--------cch
Confidence            367788776665443  34788889875432210000     00000000  00012235578888765        345


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCCeeE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISC  164 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~  164 (612)
                      .+++..|+.|.+..+..-.....- ......+++++|+|.|+.++.|-..|++.-|... ++....+.+.    ...|.+
T Consensus       171 ~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  171 SAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             hhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeE
Confidence            788889999988877643332121 1245678999999999999999999999988753 4433333321    357999


Q ss_pred             EEECCCCCEEEEeC
Q 007234          165 MAVSSDGKMLATAA  178 (612)
Q Consensus       165 l~~spdg~~l~~~~  178 (612)
                      |+|-....++++-+
T Consensus       249 v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  249 VTWLSTQEFLVVYG  262 (1405)
T ss_pred             EEEecceeEEEEec
Confidence            99988777777655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.61  E-value=4.8  Score=43.90  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEe--eCCcEEEEEEcCCCeEEEEE
Q 007234          154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS--DNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~l~s~s~~d~~i~vwd  228 (612)
                      ++......++-+.-+.-++..++.+  .++.|||.+.+....+-. ...+.|..+.|.  |+|+.+++.| -.+.|.++.
T Consensus        24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~  102 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYT  102 (631)
T ss_pred             EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEE
Confidence            3444444556666666666666654  689999999887533222 457889999886  7899999998 488888885


Q ss_pred             cC----CCccccceeeEee---cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          229 TD----GVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       229 ~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      -.    +........+..+   .+....+....|.     ++|.+++++  ++.+.|+|
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence            32    1111111112111   2232333344444     777765544  34788887

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.51  E-value=13  Score=37.62  Aligned_cols=150  Identities=16%  Similarity=0.177  Sum_probs=81.6

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEE-ECCCCceeEEEe-cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEE
Q 007234          117 PGGVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ  193 (612)
Q Consensus       117 ~~~V~~l~~sp~~~~l~s~s~dg~v~iw-d~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~  193 (612)
                      ...+.++.+.|++.+++++ ..|.+..- | ..++.-.... .....++++.+.|+++.++++. |.+++=....+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence            4568899999988655554 56655432 2 2222222222 2345789999999999988888 766532344443322


Q ss_pred             EEecC----CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe-ecCCceeEEeEEecCCccCCCCcEEE
Q 007234          194 KFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL  268 (612)
Q Consensus       194 ~~~~h----~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (612)
                      ....+    ...+..+.+.|++..+++ + .+|.+. ...+.++.-  ..... ..-+......+..      .++ ..+
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~~-~~~  317 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DPE-KGF  317 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CCC-ceE
Confidence            22111    234778899998876554 4 477554 444444321  11110 0112233344433      333 445


Q ss_pred             EEecCCcEEEEE
Q 007234          269 AISETGVCYIWY  280 (612)
Q Consensus       269 t~s~dg~i~iwd  280 (612)
                      ..+..|.|.-|+
T Consensus       318 ~~G~~G~il~~~  329 (334)
T PRK13684        318 VLGQRGVLLRYV  329 (334)
T ss_pred             EECCCceEEEec
Confidence            567778887775

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.08  E-value=5.9  Score=36.67  Aligned_cols=101  Identities=14%  Similarity=0.204  Sum_probs=62.9

Q ss_pred             CEEEEEecCCcEEEEECC--CCceeEEEecCCCCeeEEEECCCCCEEEEeC-----C---eEEEE---EcC--CCeeEE-
Q 007234          130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF---NCS--DHKKMQ-  193 (612)
Q Consensus       130 ~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g---~i~lw---d~~--~~~~~~-  193 (612)
                      ..|+.+...+.|.+|++.  ..+....|.. -+.|..+.++..|+++++--     .   .+++|   ...  ..++++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455555667889999988  3355666664 37899999999999999864     3   45665   221  112222 


Q ss_pred             EEecC---------------------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       194 ~~~~h---------------------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      .+-||                     ..++.+++..|-.-.|+.++  ++.+.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence            22232                     23456677776433355554  5689999876543

>PRK10115 protease 2; Provisional

Probab=91.92  E-value=26  Score=39.55  Aligned_cols=98  Identities=8%  Similarity=0.005  Sum_probs=60.5

Q ss_pred             CcEEEEEE-CCCc----EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCC--cee
Q 007234           86 SSLLVLGT-GGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL  152 (612)
Q Consensus        86 ~~~l~~gs-~~g~----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~--~~~  152 (612)
                      +++|+.+. .+|.    |++.|+.+|..+.....+   .-..++|.+|++.|+.+..+      ..|+.+++.++  +-.
T Consensus       138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~  214 (686)
T PRK10115        138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE  214 (686)
T ss_pred             CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence            56666554 3444    889999988744333221   12569999999876665432      36888898887  434


Q ss_pred             EEEecCCCCee-EEEECCCCCEEEEeC-----CeEEEEEc
Q 007234          153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC  186 (612)
Q Consensus       153 ~~~~~~~~~v~-~l~~spdg~~l~~~~-----g~i~lwd~  186 (612)
                      ..+........ .+..+.|+++++..+     +.+.+++.
T Consensus       215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            44544333333 334455888776544     47888884

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.80  E-value=7  Score=43.16  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             CcEEEEEECCCcEEEEEcCC-------C----eE-E------EEeccCCCCCeEEEEEe--cCCCEEEEEecCCcEEEEE
Q 007234           86 SSLLVLGTGGGDVLALAVSA-------G----QL-K------WRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID  145 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~-------~----~~-~------~~~~~~h~~~V~~l~~s--p~~~~l~s~s~dg~v~iwd  145 (612)
                      ...|++|..||.|.+|.+++       .    +. .      ..+.......+++++++  ...+++++++....|.+|-
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            67899999999999997631       1    00 0      01111234578999998  7777777777777777775


Q ss_pred             CCCC--ceeE-EEecCCCCeeEEEECCCC-----C-EEEEeC--CeEEEEEc
Q 007234          146 PLTG--SLLG-KFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC  186 (612)
Q Consensus       146 ~~~~--~~~~-~~~~~~~~v~~l~~spdg-----~-~l~~~~--g~i~lwd~  186 (612)
                      +...  +... .-..+...|-+|+|-++.     . .+++++  |.+.+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4332  1111 011245578899987643     2 666666  88888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.79  E-value=14  Score=39.47  Aligned_cols=115  Identities=9%  Similarity=0.077  Sum_probs=72.5

Q ss_pred             CCCCeEEEEEecC----CCEEEEEecCCcEEEEECC-----CCceeEEEecCC-----CCeeEEEECCCCCEEEEeC-Ce
Q 007234          116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRAST-----KGISCMAVSSDGKMLATAA-GQ  180 (612)
Q Consensus       116 h~~~V~~l~~sp~----~~~l~s~s~dg~v~iwd~~-----~~~~~~~~~~~~-----~~v~~l~~spdg~~l~~~~-g~  180 (612)
                      .-..|.+++|.|-    ...+++.-....|.+|.+.     .++.+.....+-     --...+.|+|....|++-. ..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            3356899999984    3356666678899999875     233332222111     1235678999998887665 33


Q ss_pred             E-EEEEcC--CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          181 L-KTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       181 i-~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      + .+++++  +.+....+ ...+.|.|.+|.+||+.|+.+-...=.-++||-..
T Consensus       135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            4 334443  33333444 35678999999999998887642233567887543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.67  E-value=21  Score=38.11  Aligned_cols=115  Identities=11%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC-----CeEEE----EeccCCCCCeEEEEEecCCCEEEEEecC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-----GQLKW----RLSDCHPGGVSAISFATHGSCIYSAGAD  138 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-----~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~s~d  138 (612)
                      +..+.|.|.....     ..-+++......|.||.+.-     ++.+.    .+.+...---.++.|+|....|+.-...
T Consensus        59 V~GlsW~P~~~~~-----~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   59 VHGLSWAPPCTAD-----TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eeeeeecCcccCC-----CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            3456676653220     22455566667799998852     22221    1111111123578899988776655444


Q ss_pred             CcEEEEECCCC--ceeEEEecCCCCeeEEEECCCCCEEEEeCC---eEEEEEcCC
Q 007234          139 GMVCEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAAG---QLKTFNCSD  188 (612)
Q Consensus       139 g~v~iwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~g---~i~lwd~~~  188 (612)
                      ..=.+++++..  +....++ ..+.|.|.+|.+||+.|+++-|   .-++||-..
T Consensus       134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            43345555433  2333343 4578999999999999887763   568898543

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=91.61  E-value=0.47  Score=41.10  Aligned_cols=69  Identities=22%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             hHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcc-cccCCcChHHHHHHHHHHHHh
Q 007234          492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH-HLLSQESLTPMLSSLYKVFRS  561 (612)
Q Consensus       492 ~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~-~l~s~~~l~~~L~~l~~~l~~  561 (612)
                      ..|+.+|..|+......||+++. .|+.++..+...+..+.+||+.|.. .|...|++...+..|-...++
T Consensus        49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteR  118 (141)
T PF08625_consen   49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTER  118 (141)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHH
Confidence            67999999999999999999998 7999998899999999999998875 467888888888887655443

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.43  E-value=15  Score=40.21  Aligned_cols=146  Identities=15%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEE--EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---CCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~  160 (612)
                      ...+++...+|.++||++.......  .-.+.....|..+.|..+|-.+.+.  +|.+.+-+-.....+.+++.   ...
T Consensus        94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~  171 (829)
T KOG2280|consen   94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNEL  171 (829)
T ss_pred             CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccC
Confidence            4668999999999999986443321  1011223446666666566444443  45554443222212223222   111


Q ss_pred             CeeEEEECCCCC---EEEEeC---C-eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          161 GISCMAVSSDGK---MLATAA---G-QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       161 ~v~~l~~spdg~---~l~~~~---g-~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +.+|-...+++.   .++-..   + .+.--+..+.+.. .+....+.+..+..||+.++|+--. .+|.|.+-+.+..+
T Consensus       172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH-ALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ  249 (829)
T ss_pred             CCcceeEecCCCcceeEEeechhhhhcccceeccccccc-ccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence            222333223221   111111   1 1111122222221 2222235678889999999988876 68888888776655


Q ss_pred             cc
Q 007234          234 KQ  235 (612)
Q Consensus       234 ~~  235 (612)
                      ..
T Consensus       250 ~l  251 (829)
T KOG2280|consen  250 IL  251 (829)
T ss_pred             hh
Confidence            33

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.38  E-value=5.8  Score=41.21  Aligned_cols=135  Identities=15%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-------EEEEEecCCcEEEEECCCCc-eeEE--Eec--CC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLTGS-LLGK--FRA--ST  159 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~l~s~s~dg~v~iwd~~~~~-~~~~--~~~--~~  159 (612)
                      |..-..++-.|++.|+.+.... -|...  -+.|.|+.+       .-+.|-.+..|.-.|.+-.. .+..  .+.  ..
T Consensus       486 g~~~~kLykmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK  562 (776)
T COG5167         486 GGERDKLYKMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK  562 (776)
T ss_pred             CCCcccceeeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence            4444558888999999886663 34443  566777542       12344456667777765322 1111  111  12


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ....|..-..+| ++|+++  |.|++||--.-+....+++-...|..+..+.+|+++++.|  ..++.+-|+.-.
T Consensus       563 n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ik  634 (776)
T COG5167         563 NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPIK  634 (776)
T ss_pred             ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecccc
Confidence            234444444444 777777  9999999544334445677778899999999999998886  467888776543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.33  E-value=18  Score=36.64  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~   39 (612)
                      .++|.|||++|++ ...|.|++++ ..+..
T Consensus         6 ~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~   33 (331)
T PF07995_consen    6 SMAFLPDGRLLVA-ERSGRIWVVD-KDGSL   33 (331)
T ss_dssp             EEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred             EEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence            5699999988765 5699999999 45554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.90  E-value=3.3  Score=47.09  Aligned_cols=127  Identities=13%  Similarity=0.009  Sum_probs=77.8

Q ss_pred             EEEEECCCc-EEEEEcCCCeEE----EE------eccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc-eeEEE
Q 007234           89 LVLGTGGGD-VLALAVSAGQLK----WR------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKF  155 (612)
Q Consensus        89 l~~gs~~g~-I~vwd~~~~~~~----~~------~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~-~~~~~  155 (612)
                      .++-+.+|. |..||++.-...    ..      +.........++.|+|.-. ..+.+..|+.|++.-+.... .+..+
T Consensus       116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~  195 (1405)
T KOG3630|consen  116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF  195 (1405)
T ss_pred             EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence            344444455 889998753211    01      1111223456788888543 35677788888887764322 22222


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC----CCCEEEEEEeeCCcEEEEE
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~  217 (612)
                      . .....+|++|+|.|+.++.|.  |++.-|-. +.+....+++.    ...|.+++|-..-.++++-
T Consensus       196 p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  196 P-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             C-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            2 345789999999999999998  78777754 33333333321    3678999998776666654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=8.8  Score=39.38  Aligned_cols=130  Identities=9%  Similarity=0.142  Sum_probs=84.0

Q ss_pred             EEEEECCCcEEEEEcCC--CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee----EEEecCCCCe
Q 007234           89 LVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----GKFRASTKGI  162 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~----~~~~~~~~~v  162 (612)
                      .+.+..+|.+.-|-+..  ......+.....++|.++.|++|++.+++--.|++|.+++....+..    .+.+.....|
T Consensus        36 qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I  115 (657)
T KOG2377|consen   36 QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANI  115 (657)
T ss_pred             eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCccee
Confidence            45555556655555432  22322333345679999999999999999999999999997543322    2233344468


Q ss_pred             eEEEECCCCCEEEEeCCeEEEEEcCCC-eeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234          163 SCMAVSSDGKMLATAAGQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ....|+.+....+....-+-+|-+... +.++..+.|...|.-..|.++-+.++.++
T Consensus       116 lGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  116 LGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             EEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            889998664444444444555654433 23555677888898889999887555443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.53  E-value=6.8  Score=43.91  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234          119 GVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                      .|..+.++|+|.+++..|..|. .+..+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v-~V~~L  112 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGV-VVLEL  112 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence            5778889999999888887654 44433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.47  E-value=0.89  Score=30.03  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=25.3

Q ss_pred             cccceeEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 007234            4 SNIRDILTSFSPAL---DYFAICSGDARIKIWDTLKG   37 (612)
Q Consensus         4 ~~V~~l~~~fspdg---~~las~s~dg~i~iwd~~~~   37 (612)
                      ++||++  .|||+.   ++||.+-.-|.|.|+|++++
T Consensus         1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            357756  999844   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.17  E-value=21  Score=35.35  Aligned_cols=134  Identities=19%  Similarity=0.263  Sum_probs=80.2

Q ss_pred             cEEEEEcCCCeEEEEeccC-----CCCCeEEEEEecCC-----CEEEEE-ecCCcEEEEECCCCceeEEEecC-------
Q 007234           97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSA-GADGMVCEIDPLTGSLLGKFRAS-------  158 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~-----~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~-------  158 (612)
                      +|.+||+.+++.++++.-.     ..+.+..+.+....     .+++.+ +..+-+.++|+.+++.-+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            4778899998877665321     24567888887622     244433 34467999999988765544321       


Q ss_pred             ------------CCCeeEEEECC---CCCEEEEeC-CeEEEEEcCCC--------------eeEEEEecC-CCCEEEEEE
Q 007234          159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSDH--------------KKMQKFSGH-PGAVRFMTF  207 (612)
Q Consensus       159 ------------~~~v~~l~~sp---dg~~l~~~~-g~i~lwd~~~~--------------~~~~~~~~h-~~~v~~l~~  207 (612)
                                  ...+..++.+|   +|+.|.-.. ..-++|.+.+.              +.+..+ |. .+....+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence                        12366677765   777777665 44444443221              112222 22 245667889


Q ss_pred             eeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          208 SDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       208 sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .++|..+++-- ..+.|..|+..+.
T Consensus       194 D~~G~ly~~~~-~~~aI~~w~~~~~  217 (287)
T PF03022_consen  194 DPNGNLYFTDV-EQNAIGCWDPDGP  217 (287)
T ss_dssp             ETTTEEEEEEC-CCTEEEEEETTTS
T ss_pred             CCCCcEEEecC-CCCeEEEEeCCCC
Confidence            99998776654 7889999998874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.04  E-value=16  Score=37.60  Aligned_cols=100  Identities=14%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             CCeEEEEEecCCCEEEEEe-----------cCC-cEEEEECCC--Cc--eeEEEecCCCCeeEEEECCCCCEEEEeCCeE
Q 007234          118 GGVSAISFATHGSCIYSAG-----------ADG-MVCEIDPLT--GS--LLGKFRASTKGISCMAVSSDGKMLATAAGQL  181 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~v~~l~~spdg~~l~~~~g~i  181 (612)
                      .....++|.++|+.+++-.           ..+ .|.+++-..  |+  ....+...-.....+++.++| ++++....|
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            4567889999988666542           223 677776443  32  233444444456889999998 555444666


Q ss_pred             EEE-EcCC-------Cee-EEEEec----CCCCEEEEEEeeCCcEEEEEE
Q 007234          182 KTF-NCSD-------HKK-MQKFSG----HPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       182 ~lw-d~~~-------~~~-~~~~~~----h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ..| |...       .+. +..+..    +......+.|.|||.+.++.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            545 5432       111 222322    134467899999998766655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.52  E-value=25  Score=35.60  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----CCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe
Q 007234          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK  190 (612)
Q Consensus       116 h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~  190 (612)
                      -...++++.+.++++.++++ ..|.+++=....|..-.....    ....+..+.+.|++..++++. |.+. .....++
T Consensus       213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~  290 (334)
T PRK13684        213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK  290 (334)
T ss_pred             CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence            34678999999998866654 567665433344433222221    123578899999988888877 6554 4445554


Q ss_pred             eEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          191 KMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       191 ~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      .-....   +-......+.|..+++.++++  ..|.|..|+
T Consensus       291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYV  329 (334)
T ss_pred             CCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEec
Confidence            433332   223457788888777776654  478887765

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.00  E-value=2.6  Score=43.68  Aligned_cols=84  Identities=15%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc------
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR------   82 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~------   82 (612)
                      .+++.+|++++.|+...-|+|.++|+.++..++.+++-.+.                    .+.|........+      
T Consensus       311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--------------------qc~wi~~~~~~~~~~~~~~  370 (415)
T PF14655_consen  311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--------------------QCGWIEVPEEGDRDRSNSN  370 (415)
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--------------------eEEEEEeeccccccccccc
Confidence            45699999999888877899999999999999988754332                    2233322111100      


Q ss_pred             ------ccCCcEEEEEECCCcEEEEEcCCCeEEEEe
Q 007234           83 ------KLGSSLLVLGTGGGDVLALAVSAGQLKWRL  112 (612)
Q Consensus        83 ------~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~  112 (612)
                            +...-+++-+-.-|.|.||.+++|..+..+
T Consensus       371 ~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  371 SPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             ccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence                  001223445667788999998877665444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.78  E-value=5.4  Score=43.68  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=46.7

Q ss_pred             CcEEEEEECCCcEEEEEcCC----CeEEEEe-ccC--------------------CCCCeEEEEEec----CCCEEEEEe
Q 007234           86 SSLLVLGTGGGDVLALAVSA----GQLKWRL-SDC--------------------HPGGVSAISFAT----HGSCIYSAG  136 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~----~~~~~~~-~~~--------------------h~~~V~~l~~sp----~~~~l~s~s  136 (612)
                      ...++++..||.+.......    +...... ...                    -...+..+++++    +..++++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            66788899999988777664    2221111 110                    123455666666    677899999


Q ss_pred             cCCcEEEEECCCCceeEEEecC
Q 007234          137 ADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus       137 ~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      .|+++|+||+.+++++.+....
T Consensus       238 ~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCeEEEEECCCCeEEEEeccc
Confidence            9999999999999998887654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.75  E-value=3.4  Score=39.00  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=24.0

Q ss_pred             EecCCCEEEEEecCCcEEEEECCCCceeE
Q 007234          125 FATHGSCIYSAGADGMVCEIDPLTGSLLG  153 (612)
Q Consensus       125 ~sp~~~~l~s~s~dg~v~iwd~~~~~~~~  153 (612)
                      +..+++++++...+|.+++||+.+++.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            44568899999999999999999886643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.41  E-value=4.1  Score=38.92  Aligned_cols=141  Identities=13%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             EEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCC---CeeEEEEe---cCCCCEEEEEEeeC
Q 007234          142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSD---HKKMQKFS---GHPGAVRFMTFSDN  210 (612)
Q Consensus       142 ~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~---~~~~~~~~---~h~~~v~~l~~sp~  210 (612)
                      .+||+.+++....-......+.+-.+-|||+++.+|+     ..+++++..+   .....+..   .....-.....-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            4788887754322111223555567889999999988     3688888654   11111110   11122233455689


Q ss_pred             CcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      |+.++.+|....+...|.-....... .....+.     ......-.+...     |+|+.++.+..+.  .+||..+.+
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~-~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~s--~i~d~~~n~  200 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGP-VTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRGS--IIYDYKTNT  200 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCc-eeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCCc--EEEeCCCCe
Confidence            99999988644455555543221110 0000010     111112223333     9999998888754  456877776


Q ss_pred             eeccc
Q 007234          286 ELRNT  290 (612)
Q Consensus       286 ~~~~~  290 (612)
                      .++..
T Consensus       201 v~~~l  205 (243)
T PF07250_consen  201 VVRTL  205 (243)
T ss_pred             EEeeC
Confidence            55443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.25  E-value=5.3  Score=46.32  Aligned_cols=144  Identities=18%  Similarity=0.313  Sum_probs=82.3

Q ss_pred             eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEc
Q 007234           24 SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAV  103 (612)
Q Consensus        24 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~  103 (612)
                      +-|+.+.+|+..++...+.+.+....+..+..-.+ ..|-.-..+                 ..++++++ --.|.++-+
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I-----------------qhlLvvaT-~~ei~ilgV  156 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI-----------------QHLLVVAT-PVEIVILGV  156 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh-----------------heeEEecc-cceEEEEEE
Confidence            35889999999998888888877766665554444 222221111                 22233333 333444333


Q ss_pred             CC----CeEE-----EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--CC---c-e----------------e
Q 007234          104 SA----GQLK-----WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TG---S-L----------------L  152 (612)
Q Consensus       104 ~~----~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~--~~---~-~----------------~  152 (612)
                      .-    +..-     .++ ......|+|+....+|+.|++| .||.|+-.-.+  .|   + +                +
T Consensus       157 ~~~~~~~~~~~f~~~~~i-~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  157 SFDEFTGELSIFNTSFKI-SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             EeccccCcccccccceee-ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            21    1110     011 1124568899877788766665 66655433221  11   1 1                1


Q ss_pred             EEEe-cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC
Q 007234          153 GKFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (612)
Q Consensus       153 ~~~~-~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~  188 (612)
                      -.+. .+..+|..++....-..+.+-+  |+|.+||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            1122 3456899999998777887777  9999999976

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.61  E-value=17  Score=31.01  Aligned_cols=107  Identities=16%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             EEEecCCCEEEEEecCCcEEEEECCCC--------ceeEEEecCCCCeeEEEECC-----CCCEEEEeC-CeEEEEEcCC
Q 007234          123 ISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCSD  188 (612)
Q Consensus       123 l~~sp~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~sp-----dg~~l~~~~-g~i~lwd~~~  188 (612)
                      -.|......|++++.-|+|.+++....        ..+..+. -...|++++-.+     +...|+.|+ ..+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence            345555567888888899999986533        2344444 345677776443     456788888 8999999987


Q ss_pred             CeeEEEEecCCCCEEEEEEee----CCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          189 HKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~sp----~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..-+..- .-...|+++.+-.    +...++. | .+..|.=||....+
T Consensus        83 N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   83 NSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNE  128 (136)
T ss_pred             Cchhhhh-hCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcE
Confidence            7543221 2235677776632    2344444 4 36677777655543

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.54  E-value=45  Score=36.68  Aligned_cols=165  Identities=11%  Similarity=0.177  Sum_probs=88.0

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      +.+.|.++++.+++....|.|.+||...+....  ..+..  .-..+.|+.            -+.++...      .+.
T Consensus       133 v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~--~~~~v~ys~------------fv~~~~~~------~~~  192 (670)
T PF10395_consen  133 VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLK--SSINVSYSK------------FVNDFELE------NGK  192 (670)
T ss_pred             EEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccc--cccceehhh------------hhcccccc------cCC
Confidence            566999999999999999999999993332221  11110  001111210            01111100      013


Q ss_pred             cEEEEEEC-CCc---EEEEEc--CCCeEEEEec--cCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           87 SLLVLGTG-GGD---VLALAV--SAGQLKWRLS--DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        87 ~~l~~gs~-~g~---I~vwd~--~~~~~~~~~~--~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                      .++++-+. ++.   .+++.+  ...... .+.  ..+........|.- +|. |+-= .+++|.+|++...+..+++.-
T Consensus       193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l  269 (670)
T PF10395_consen  193 DLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISL  269 (670)
T ss_pred             ceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEe
Confidence            44444444 333   678887  222222 221  11222233333433 443 3333 678999999988877666543


Q ss_pred             C-----C-CCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEe
Q 007234          158 S-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS  196 (612)
Q Consensus       158 ~-----~-~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~  196 (612)
                      .     . ..+.++.--...+.|++..+.|++.|+.=...+.++.
T Consensus       270 ~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  270 PSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             chhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence            2     1 2344554434566777777999999987555554443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.36  E-value=2.3  Score=27.36  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             EEecCCCCEEEEEEeeCCcEEEEEEcCC--CeEEEE
Q 007234          194 KFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW  227 (612)
Q Consensus       194 ~~~~h~~~v~~l~~sp~~~~l~s~s~~d--~~i~vw  227 (612)
                      .+......-....|+|||+.|+.++..+  |.-.||
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3444556677889999999988887666  665555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.27  E-value=36  Score=35.17  Aligned_cols=106  Identities=17%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .++|+++  .||+|.+.||.--.|.+|.+++....+....+. +             .+......+-...|...      
T Consensus        66 ~G~I~SI--kFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~-------------~ck~k~~~IlGF~W~~s------  123 (657)
T KOG2377|consen   66 KGEIKSI--KFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-Q-------------ECKTKNANILGFCWTSS------  123 (657)
T ss_pred             CCceeEE--EeccCcceEEEEecCceEEEEecCCCchhhHHH-H-------------HhccCcceeEEEEEecC------
Confidence            4689777  999999999999999999999885443322221 0             01111223445566553      


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA  135 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~  135 (612)
                          .-++.-+..|. -+|-+.......++.+.|...|.-..|.++.+.++-+
T Consensus       124 ----~e~A~i~~~G~-e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  124 ----TEIAFITDQGI-EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             ----eeEEEEecCCe-EEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence                34566655553 3343332222223446788899999999988764443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.79  E-value=31  Score=33.26  Aligned_cols=185  Identities=13%  Similarity=0.082  Sum_probs=107.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-E--ecCCCCe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-F--RASTKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~--~~~~~~v  162 (612)
                      +..-+.+...|.|--.|..+|+.... .-+....-..+..-|||..-++-+.. -|.-.|-++.+..+- +  +......
T Consensus        73 G~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nl  150 (353)
T COG4257          73 GAVWFTAQGTGAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANL  150 (353)
T ss_pred             CceEEecCccccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcc
Confidence            55666777777788888888887633 33455667788888888765554333 566667655543221 1  2223467


Q ss_pred             eEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      ....|.+.|++-+++. |----.|..++ .+..+... ...-+.|+..|+|...+++- .+..|-..|...+...    +
T Consensus       151 et~vfD~~G~lWFt~q~G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~ae----v  224 (353)
T COG4257         151 ETAVFDPWGNLWFTGQIGAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAE----V  224 (353)
T ss_pred             cceeeCCCccEEEeeccccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcc----e
Confidence            8899999999999886 21111121111 12223221 22346788899998776653 5677777776665322    1


Q ss_pred             EeecCC-ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          241 LAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       241 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      +..... ......++.+     +.|+.-++....+.++-||..+
T Consensus       225 ~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         225 VPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCccc
Confidence            111111 1222333333     6777777766677777776543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.57  E-value=3.2  Score=27.50  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             CCeEEEEEecCC---CEEEEEecCCcEEEEECCC
Q 007234          118 GGVSAISFATHG---SCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus       118 ~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~~  148 (612)
                      +.|.++.|+|++   .+|+-+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4777777889999999985

It contains a characteristic DLL sequence motif.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.55  E-value=67  Score=37.88  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=23.7

Q ss_pred             ccCCCeEEEEecCCCceEeccccceeeecceeeecceeecc
Q 007234          347 VNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALD  387 (612)
Q Consensus       347 ~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~~~~~~  387 (612)
                      .|.+...++|+||||...++ -  .+..|+..+...+..++
T Consensus       659 A~lnsp~alaVsPdg~v~IA-D--~gN~rIr~Vs~~~~~~~  696 (1899)
T KOG4659|consen  659 AKLNSPYALAVSPDGDVIIA-D--SGNSRIRKVSARMAKYD  696 (1899)
T ss_pred             cccCCcceEEECCCCcEEEe-c--CCchhhhhhhhcccccC
Confidence            46667899999999998733 2  33445554433344443

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.11  E-value=76  Score=37.11  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=78.0

Q ss_pred             CcEEEEEEC---------CCcEEEEEcCC-----Ce-----EEE-EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234           86 SSLLVLGTG---------GGDVLALAVSA-----GQ-----LKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (612)
Q Consensus        86 ~~~l~~gs~---------~g~I~vwd~~~-----~~-----~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd  145 (612)
                      ..++++|+.         -|.++|||+-.     |+     .+. -+.+...++|..++= -+| +|++| ....|.+|+
T Consensus      1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred             cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEE
Confidence            678888875         47799998732     21     121 222445677777763 245 45555 456799999


Q ss_pred             CC-CCceeEE-EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEEEec--CCCCEEEEEEeeCCc--EEEE
Q 007234          146 PL-TGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSG--HPGAVRFMTFSDNGK--YVLS  216 (612)
Q Consensus       146 ~~-~~~~~~~-~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~~~~--h~~~v~~l~~sp~~~--~l~s  216 (612)
                      ++ ....+.. |-  .-++.-....--.++++.|+  ..|.+.-.+.. ..+.-+..  ..-.+.+..|--||.  ++++
T Consensus      1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred             eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence            84 3333322 21  11222223333356777777  55665554432 22222221  223577888887775  3444


Q ss_pred             EEcCCCeEEEEEcCCC
Q 007234          217 SAVGERYIALWRTDGV  232 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~  232 (612)
                      + ..||.|.++-....
T Consensus      1201 s-Da~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1201 S-DADRNIHVYMYAPE 1215 (1366)
T ss_pred             E-cCCCcEEEEEeCCC
Confidence            4 47999988865443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.80  E-value=4.2  Score=38.34  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=41.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEe------cc-------CCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~------~~-------~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                      ++++++-+.+|.+++||+.+++.+..-      ..       .....|..+.++.+|.-+++-+ +|..+.||..
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            788999999999999999998775322      11       2345566666766665555543 4566666643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.61  E-value=49  Score=34.42  Aligned_cols=143  Identities=15%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             EEEEEecCCCEEEEEecCCcEE-EEECCCCcee-EEE-ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe-----e
Q 007234          121 SAISFATHGSCIYSAGADGMVC-EIDPLTGSLL-GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----K  191 (612)
Q Consensus       121 ~~l~~sp~~~~l~s~s~dg~v~-iwd~~~~~~~-~~~-~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~-----~  191 (612)
                      ..+..+++|.+++.+ ..|.+. -||  .|+.. ... ......++++.+.+++.+++++. |.+. +....++     .
T Consensus       242 ~~v~~~~dG~~~~vg-~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVS-SRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEE-CCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence            334556676655555 344433 344  23221 111 22344789999999999998888 5543 3444443     2


Q ss_pred             EEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCCCCcEEE
Q 007234          192 MQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVL  268 (612)
Q Consensus       192 ~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  268 (612)
                      ......  ....+..+.|.+++..++++  ..|.+... .+.++.=  ....... -..... .+.|.     ++ ....
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s-~D~G~tW--~~~~~~~~~~~~ly-~v~f~-----~~-~~g~  385 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRS-TDGGKSW--KRDKGADNIAANLY-SVKFF-----DD-KKGF  385 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEe-CCCCcce--eEccccCCCCccee-EEEEc-----CC-CceE
Confidence            232221  12348889999888766654  47766554 3333311  0111001 112233 44443     33 4455


Q ss_pred             EEecCCcEEEE
Q 007234          269 AISETGVCYIW  279 (612)
Q Consensus       269 t~s~dg~i~iw  279 (612)
                      +.+.+|.|.-|
T Consensus       386 ~~G~~G~il~~  396 (398)
T PLN00033        386 VLGNDGVLLRY  396 (398)
T ss_pred             EEeCCcEEEEe
Confidence            66677877655

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.47  E-value=3.4  Score=26.83  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=24.7

Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCcEEEEeec
Q 007234           15 PALDYFAICS-GDARIKIWDTLKGQVQTEFAD   45 (612)
Q Consensus        15 pdg~~las~s-~dg~i~iwd~~~~~~~~~~~~   45 (612)
                      ||+++|.++. .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            6788776655 478999999999998887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.20  E-value=27  Score=38.72  Aligned_cols=108  Identities=11%  Similarity=0.117  Sum_probs=66.5

Q ss_pred             eEEEEEec--CCCEEEEEecCCcEEEEECCC-------C-------------ceeEEEecCCCCeeEEEEC--CCCCEEE
Q 007234          120 VSAISFAT--HGSCIYSAGADGMVCEIDPLT-------G-------------SLLGKFRASTKGISCMAVS--SDGKMLA  175 (612)
Q Consensus       120 V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~s--pdg~~l~  175 (612)
                      |+-+....  +...|+.|..||.|.+|.+++       .             ++...+. ....+++++++  ...+++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            44444332  345688999999999996521       0             0122222 23478999998  8888999


Q ss_pred             EeC--CeEEEEEcCC--Cee-EEEEecCCCCEEEEEEeeCC-----c-EEEEEEcCCCeEEEEEc
Q 007234          176 TAA--GQLKTFNCSD--HKK-MQKFSGHPGAVRFMTFSDNG-----K-YVLSSAVGERYIALWRT  229 (612)
Q Consensus       176 ~~~--g~i~lwd~~~--~~~-~~~~~~h~~~v~~l~~sp~~-----~-~l~s~s~~d~~i~vwd~  229 (612)
                      +++  ..|.||-...  .+. ...-..|...|.+++|.++.     . .+++++ -.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence            888  4555554332  221 11111255678899998653     2 455554 6899988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.14  E-value=1.6  Score=48.12  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             CcEEEEEcC--CCeEEE----EeccCCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234           96 GDVLALAVS--AGQLKW----RLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        96 g~I~vwd~~--~~~~~~----~~~~~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      |...||++.  .|+...    +........+.-+.|.|   +.-++..+-.++.|++.++.+... ..|+.|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            667888775  343322    22222333444444444   555556666777888776654332 33444665655555


Q ss_pred             ECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       167 ~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      |-..|-+++.+                             .||||+.++..+ .||.++.|.+.
T Consensus       232 ~~~~g~~~l~~-----------------------------lSpDGtv~a~a~-~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  232 FFAEGVLKLAS-----------------------------LSPDGTVFAWAI-SDGSVGFYQIY  265 (1283)
T ss_pred             HHhhchhhhee-----------------------------eCCCCcEEEEee-cCCccceeeee
Confidence            44333221110                             567777666665 47766666653

>PLN02193 nitrile-specifier protein

Probab=85.04  E-value=58  Score=34.82  Aligned_cols=145  Identities=11%  Similarity=0.041  Sum_probs=67.9

Q ss_pred             CcEEEEEECC-------CcEEEEEcCCCeEEEEeccC-CCC--CeEEEEEecCCCEEEEEecC-----CcEEEEECCCCc
Q 007234           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~~-------g~I~vwd~~~~~~~~~~~~~-h~~--~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~  150 (612)
                      +.+++.|+.+       ..+.+||+.+.+-...-..+ ...  ........-++..++.|+.+     ..+.++|+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            5556666643       23778898876543111000 001  11111112245556666654     358888987754


Q ss_pred             eeEE--Eec-C-CCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecC----CCCEEEEEEeeCCcEEE
Q 007234          151 LLGK--FRA-S-TKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       151 ~~~~--~~~-~-~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~  215 (612)
                      -...  ... . ...-.+++. -++++.+.|+       ..+..||+.+.+-.. +...    ..........-+++.++
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~~~gkiyv  333 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEVVQGKVWV  333 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEEECCcEEE
Confidence            3221  100 1 111122222 2456666665       257788887765321 1110    00101111223566666


Q ss_pred             EEEcCC----CeEEEEEcCCCc
Q 007234          216 SSAVGE----RYIALWRTDGVK  233 (612)
Q Consensus       216 s~s~~d----~~i~vwd~~~~~  233 (612)
                      .++ .+    ..+.+||+.+.+
T Consensus       334 iGG-~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        334 VYG-FNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EEC-CCCCccCceEEEECCCCE
Confidence            665 34    357888887764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.01  E-value=45  Score=33.52  Aligned_cols=103  Identities=12%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             CCCEEEEEecC-----CcEEEEECCCCcee---EEEecCCCCe--eEEEECCCCCEEEEeC-------CeEEEEEcCCCe
Q 007234          128 HGSCIYSAGAD-----GMVCEIDPLTGSLL---GKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK  190 (612)
Q Consensus       128 ~~~~l~s~s~d-----g~v~iwd~~~~~~~---~~~~~~~~~v--~~l~~spdg~~l~~~~-------g~i~lwd~~~~~  190 (612)
                      ++..++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++.. ++++.+.|+       ..+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566666654     35677777665431   2221111111  122222 466666665       368889988765


Q ss_pred             eEE--EEecCCCCEEEEEEeeCCcEEEEEEcCCC----eEEEEEcCCCc
Q 007234          191 KMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK  233 (612)
Q Consensus       191 ~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d~----~i~vwd~~~~~  233 (612)
                      -..  .+... ......+..-+++..+.+| .++    .+.+||..+..
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence            322  22211 1222233344566666665 343    24577877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=84.80  E-value=43  Score=33.10  Aligned_cols=191  Identities=9%  Similarity=0.107  Sum_probs=92.8

Q ss_pred             EEEEcCCCCEEE--EEeC----------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234           10 LTSFSPALDYFA--ICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus        10 ~~~fspdg~~la--s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      .+...++|++-+  +|.-          .-+|.+||+.+++.++++.-........            .....+.....+
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~------------s~lndl~VD~~~   72 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPD------------SFLNDLVVDVRD   72 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TC------------GGEEEEEEECTT
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccc------------cccceEEEEccC
Confidence            347777776444  2321          1278899999999998886433221111            111122222211


Q ss_pred             cccccccCCcEEEEEECC-CcEEEEEcCCCeEEEEeccCC-------------------CCCeEEEEEec---CCCEEEE
Q 007234           78 RKKKRKLGSSLLVLGTGG-GDVLALAVSAGQLKWRLSDCH-------------------PGGVSAISFAT---HGSCIYS  134 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs~~-g~I~vwd~~~~~~~~~~~~~h-------------------~~~V~~l~~sp---~~~~l~s  134 (612)
                      ..    ....++.++... +.|.|+|+.+++.-+.+ ..+                   ...+.+++.+|   +++.|+-
T Consensus        73 ~~----~~~~~aYItD~~~~glIV~dl~~~~s~Rv~-~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   73 GN----CDDGFAYITDSGGPGLIVYDLATGKSWRVL-HNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             TT----S-SEEEEEEETTTCEEEEEETTTTEEEEEE-TCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             CC----CcceEEEEeCCCcCcEEEEEccCCcEEEEe-cCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            10    002455555555 45999999998764332 111                   12355666655   5555655


Q ss_pred             EecCCc-EEEEEC---CCC---------ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe---eEEEE-
Q 007234          135 AGADGM-VCEIDP---LTG---------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKF-  195 (612)
Q Consensus       135 ~s~dg~-v~iwd~---~~~---------~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~---~~~~~-  195 (612)
                      +...+. ++--..   +..         +.+..+-........++++++|.+.++--  +.|..|+..+.-   ....+ 
T Consensus       148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~  227 (287)
T PF03022_consen  148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA  227 (287)
T ss_dssp             EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred             EeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence            543332 222211   111         11222211123556788899888777665  799999987621   12222 


Q ss_pred             ecC--CCCEEEEEEee--CCcEEEEE
Q 007234          196 SGH--PGAVRFMTFSD--NGKYVLSS  217 (612)
Q Consensus       196 ~~h--~~~v~~l~~sp--~~~~l~s~  217 (612)
                      ...  -..+..+.+.+  +|...+.+
T Consensus       228 ~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  228 QDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             E-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EcCceeeccceeeeccccCceEEEEE
Confidence            112  34677888888  66544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.80  E-value=53  Score=34.15  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-----eeEEEec--CCCCeeEEEECCCCCEEEEeC-CeEEEEEcC
Q 007234          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-----LLGKFRA--STKGISCMAVSSDGKMLATAA-GQLKTFNCS  187 (612)
Q Consensus       116 h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~--~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~  187 (612)
                      ....++++.|.+++..++++ .+|.+. |....++     .......  ....+.++.+.+++..+++|. |.+... ..
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D  355 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD  355 (398)
T ss_pred             CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence            34678999999998866655 566653 3334443     2232222  123589999999999999998 766554 34


Q ss_pred             CCeeEEEEe---cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       188 ~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      .++.-....   .-....+.+.|.++++.++++  .+|.|.-|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence            554433332   234568899998887766664  58877654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.61  E-value=21  Score=37.41  Aligned_cols=94  Identities=11%  Similarity=0.183  Sum_probs=51.8

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecC
Q 007234          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH  198 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h  198 (612)
                      .|..+..++.|..++-+|.+|.+.++=.+..-.-..++..+..|+|=.+.-+.++ ++.+                   .
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss-------------------~  164 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSS-------------------T  164 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccC-------------------C
Confidence            4667778899999888888887665543333333344443344444444322222 1111                   1


Q ss_pred             CCCEEEEEEeeCC---cEEEEEEcCCCeEEEEEcCCCc
Q 007234          199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       199 ~~~v~~l~~sp~~---~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      .-.+...+|+|+.   ..|+.-. .|..|++|++....
T Consensus       165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT  201 (741)
T ss_pred             ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence            1123445666654   3444444 48888888876543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.46  E-value=62  Score=33.84  Aligned_cols=181  Identities=8%  Similarity=0.036  Sum_probs=100.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-----------------
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----------------  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-----------------  148 (612)
                      ..+|.+=+.||.+.+|+-++-.....+ .. .--...+.|.+....|++++.+..+..|....                 
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~  222 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD  222 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence            478999999999999997654433222 22 23345677888888899999998888886421                 


Q ss_pred             ---Cce-eE--EEecCCCCeeE---EEEC-CCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEee----CCc--
Q 007234          149 ---GSL-LG--KFRASTKGISC---MAVS-SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD----NGK--  212 (612)
Q Consensus       149 ---~~~-~~--~~~~~~~~v~~---l~~s-pdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp----~~~--  212 (612)
                         ++. ..  ++.- ...+..   +.++ .....++.|..++.+.+- +|......+-.-.+.....|..    ++.  
T Consensus       223 ~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~  300 (418)
T PF14727_consen  223 ISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTR  300 (418)
T ss_pred             ccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence               010 00  1111 122333   3333 233455555578888875 4544332222122222222221    222  


Q ss_pred             -EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          213 -YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       213 -~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                       .++.++ .++++.||.=.+-.     ....+.+....+....+.     .-...|++-+.+|.+.+-=+
T Consensus       301 ~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YL  359 (418)
T PF14727_consen  301 LNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYL  359 (418)
T ss_pred             eEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEe
Confidence             355555 68999888633221     112223444455555554     44567888899999887644

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.41  E-value=5.3  Score=25.89  Aligned_cols=30  Identities=13%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             CCCCEEEEeC---CeEEEEEcCCCeeEEEEecC
Q 007234          169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSGH  198 (612)
Q Consensus       169 pdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h  198 (612)
                      |+++.|+++.   ++|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            6788787765   79999999999888877653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.19  E-value=39  Score=39.74  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=23.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCC
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLK   36 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~   36 (612)
                      .++|+|.-.++|.+..+|.|+++-...
T Consensus        40 ~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   40 ALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             ceeeccccceEEEEEecccEEEecccc
Confidence            459999999999999999999987643

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.35  E-value=0.24  Score=50.68  Aligned_cols=139  Identities=13%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ...|-|.+.-++.++.+..+..||-. |+......                   .....-.++|.-.-        +..+
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------------------~tg~aldm~wDkeg--------dvla   90 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------------------PTGKALDMAWDKEG--------DVLA   90 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------------------CchhHhhhhhcccc--------chhh
Confidence            45788877778888888888888864 44433221                   11223345555421        4567


Q ss_pred             EEEECCCcEEEEEcCCCeEEE-EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234           90 VLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                      +.+-..+.+.+||+.+..... .....|...  -+.|++.+..++.+...|.+.+++..+.+.+-..-.|...++++++.
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~  168 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT  168 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence            778888999999998754321 111122222  27789888888888899999999987776665555577889999999


Q ss_pred             CCCCEEEEeC
Q 007234          169 SDGKMLATAA  178 (612)
Q Consensus       169 pdg~~l~~~~  178 (612)
                      +.+..+..+.
T Consensus       169 lEd~vil~dc  178 (615)
T KOG2247|consen  169 LEDYVILCDC  178 (615)
T ss_pred             ccceeeecCc
Confidence            9887666554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.10  E-value=64  Score=33.10  Aligned_cols=190  Identities=14%  Similarity=0.242  Sum_probs=104.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEe-eecccccccccCCcEEEEEE-
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-LSVDRKKKRKLGSSLLVLGT-   93 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~l~~gs-   93 (612)
                      ...+++....++=+.+||+. |+.++.+..                |...  ...+.. +....+      ..-|++++ 
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~----------------Gr~N--NVDvrygf~l~g~------~vDlavas~  121 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV----------------GRPN--NVDVRYGFPLNGK------TVDLAVASD  121 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE-S----------------S-EE--EEEEEEEEEETTE------EEEEEEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeecC----------------CCcc--eeeeecceecCCc------eEEEEEEec
Confidence            34577777778889999996 666666631                1110  001110 111100      11134444 


Q ss_pred             CC---CcEEEEEcC--CCeEEEEecc-C-----CCCCeEEEEEe--c-CCC-EEEEEecCCcEEEEECC---CC----ce
Q 007234           94 GG---GDVLALAVS--AGQLKWRLSD-C-----HPGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SL  151 (612)
Q Consensus        94 ~~---g~I~vwd~~--~~~~~~~~~~-~-----h~~~V~~l~~s--p-~~~-~l~s~s~dg~v~iwd~~---~~----~~  151 (612)
                      .+   ..|++|.+.  ++.. ..+.. .     -...+.++|+.  | +|. +++....+|.+..|.+.   .+    +.
T Consensus       122 R~~g~n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l  200 (381)
T PF02333_consen  122 RSDGRNSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL  200 (381)
T ss_dssp             -CCCT-EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred             CcCCCCeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence            33   348888665  4433 23211 1     11347788874  3 354 46667788988888664   33    46


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC-----CeeEEEEec--CCCCEEEEEEee--CC-cEEEEEEc
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAV  219 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~-----~~~~~~~~~--h~~~v~~l~~sp--~~-~~l~s~s~  219 (612)
                      +++|.. ...+..|........|+.+.  --|+-|+.+.     ++.+....+  ....|-.|++..  ++ .||+.++-
T Consensus       201 VR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  201 VREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             EEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             EEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence            777775 34788999998888888887  3566666542     233333322  345788887754  33 37777777


Q ss_pred             CCCeEEEEEcCCC
Q 007234          220 GERYIALWRTDGV  232 (612)
Q Consensus       220 ~d~~i~vwd~~~~  232 (612)
                      .+++..||+....
T Consensus       280 G~~sf~Vy~r~~~  292 (381)
T PF02333_consen  280 GDNSFAVYDREGP  292 (381)
T ss_dssp             GGTEEEEEESSTT
T ss_pred             CCCeEEEEecCCC
Confidence            7889999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=81.81  E-value=63  Score=32.78  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=50.4

Q ss_pred             CcEEEEEECC-------CcEEEEEcCCCeEEEEeccCCCC-----CeEEEEEecCCCEEEEEecC-----CcEEEEECCC
Q 007234           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT  148 (612)
Q Consensus        86 ~~~l~~gs~~-------g~I~vwd~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~  148 (612)
                      +.+++.|+.+       ..+.+||+.+.+-...-..+...     ....+.+  +++.++.|+.+     ..+.+||+.+
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence            5566666653       24888998886543211101000     1112222  45566666643     3578889876


Q ss_pred             CceeE--EEec---CCC-CeeEEEECCCCCEEEEeC-C------------eEEEEEcCCCee
Q 007234          149 GSLLG--KFRA---STK-GISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKK  191 (612)
Q Consensus       149 ~~~~~--~~~~---~~~-~v~~l~~spdg~~l~~~~-g------------~i~lwd~~~~~~  191 (612)
                      .+-..  .+..   ... .-.+++. -++++.+.|+ .            .+.+||.++.+-
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            54321  1110   111 1122232 3566666655 1            477888877643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.64  E-value=67  Score=32.98  Aligned_cols=187  Identities=12%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe----cCCCE--EEEEec-C---CcEEEEECC--CCceeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA----THGSC--IYSAGA-D---GMVCEIDPL--TGSLLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~--l~s~s~-d---g~v~iwd~~--~~~~~~  153 (612)
                      .++|+.....+-+.+||+..... ..+..   +..+.+..-    -+|+.  |+.++. +   .+|++|-+.  ++. +.
T Consensus        68 kSlIigTdK~~GL~VYdL~Gk~l-q~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~  142 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLDGKEL-QSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT  142 (381)
T ss_dssp             G-EEEEEETTTEEEEEETTS-EE-EEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred             cceEEEEeCCCCEEEEcCCCcEE-EeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence            56677777778899999985554 34432   333333321    13443  455553 2   468888664  343 33


Q ss_pred             EEec-------CCCCeeEEEEC--C-CCCEEEEeC---CeEEEEEc---CCC----eeEEEEecCCCCEEEEEEeeCCcE
Q 007234          154 KFRA-------STKGISCMAVS--S-DGKMLATAA---GQLKTFNC---SDH----KKMQKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       154 ~~~~-------~~~~v~~l~~s--p-dg~~l~~~~---g~i~lwd~---~~~----~~~~~~~~h~~~v~~l~~sp~~~~  213 (612)
                      .+..       ....++.+|+.  | +|.+.+...   |.+.-|-+   ..+    +.+++|.. .+.+..|.......+
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR  221 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence            3321       12346777763  3 566555433   76666654   333    46788864 446888888877777


Q ss_pred             EEEEEcCCCeEEEEEcCCCccccceeeEeecC-----CceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCc
Q 007234          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEH-----PAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI  284 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~  284 (612)
                      |+.+= ++.-|.-|+.+.........+.....     ...-+....-.     ....+|++++. +++..+|+.+..
T Consensus       222 LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~-----~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  222 LYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS-----DGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C-----CC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC-----CCCeEEEEEcCCCCeEEEEecCCC
Confidence            88764 77777777766433221222322211     11222322221     22346666655 778999997643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=81.27  E-value=4.1  Score=35.74  Aligned_cols=71  Identities=10%  Similarity=0.088  Sum_probs=61.9

Q ss_pred             ChhHHHHhhhccChhhHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhcccccCCcChHHHHHHHHHHHHh
Q 007234          490 PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVFRS  561 (612)
Q Consensus       490 ~~~~I~~ti~~Lp~~~~~~lL~~l~~~l~~~~~~~~~~~~W~~~ll~~H~~~l~s~~~l~~~L~~l~~~l~~  561 (612)
                      .-..+..++...+...+.++|+|+...+ ..|.-...++.++..+|-+.+..+-..|.+...+..|+..+.+
T Consensus        60 ~R~~L~~AL~~Rde~~L~piL~Fl~k~i-~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~  130 (148)
T PF09384_consen   60 RRGALRAALAGRDEESLEPILKFLIKNI-TDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQE  130 (148)
T ss_pred             HccHHHHHHHhCCHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            4567888888899999999999999666 6787799999999999999999999988888899888887764

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=81.20  E-value=27  Score=35.93  Aligned_cols=161  Identities=17%  Similarity=0.175  Sum_probs=90.5

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eecc-CCccccccccccccccccccceeEEEeeecccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++|..+  -..|||++|..-+. .++.|+++.+...... +-.. .+.+..              .++.-...       
T Consensus       221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~--------------~Vte~l~l-------  276 (733)
T COG4590         221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRH--------------QVTEQLYL-------  276 (733)
T ss_pred             cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHH--------------HHHHHHHH-------
Confidence            466666  78899998876654 5788988875543221 1100 000000              00000000       


Q ss_pred             cccCCcEEEEEECCCcEEEE-EcCCCeEEEEe-----ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           82 RKLGSSLLVLGTGGGDVLAL-AVSAGQLKWRL-----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vw-d~~~~~~~~~~-----~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                       -.++..+.++..||-|.-| |+..+... ++     .+-....+..+.-..+.+-+++-+..|++..+.....+.+- +
T Consensus       277 -L~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~  353 (733)
T COG4590         277 -LSGGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-F  353 (733)
T ss_pred             -HhCceeEEEEcCCCceeeeeeeecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-h
Confidence             0025668888999997654 66544321 11     01112333333333334557777888888887754433322 2


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCee
Q 007234          156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK  191 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~  191 (612)
                      ......+.-+++||.+.++++-. |.++++.+++..+
T Consensus       354 ~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         354 ERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             hhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence            22233667899999999999988 8999998876543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=80.73  E-value=1.1e+02  Score=35.01  Aligned_cols=115  Identities=10%  Similarity=0.057  Sum_probs=75.4

Q ss_pred             ccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC----eEEEEeccCCCC----------CeEEEEEecCCC
Q 007234           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPG----------GVSAISFATHGS  130 (612)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~----~~~~~~~~~h~~----------~V~~l~~sp~~~  130 (612)
                      +.....++++|.+        ...+|+....|.-.||++..+    .........+.+          .-..+.|.++..
T Consensus       145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~  216 (765)
T PF10214_consen  145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN  216 (765)
T ss_pred             CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence            3445566777665        568999999999999999211    111122112222          234778888888


Q ss_pred             EEEEEecCCcEEEEECCCCceeE-EEe-cCCCCeeEEEECCC--CCEEEEeCCeEEEEEcCC
Q 007234          131 CIYSAGADGMVCEIDPLTGSLLG-KFR-ASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD  188 (612)
Q Consensus       131 ~l~s~s~dg~v~iwd~~~~~~~~-~~~-~~~~~v~~l~~spd--g~~l~~~~g~i~lwd~~~  188 (612)
                      .|+.++. ..+.++|+.+..... ... .....|..+.-+|+  +..++..+..|...++..
T Consensus       217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             EEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            8888854 568899998876533 222 23347888888887  455555558888888876

These proteins are found in fungi.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.71  E-value=12  Score=33.87  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             CeeEEEECCCCCEEEEeCCeEEEEEc
Q 007234          161 GISCMAVSSDGKMLATAAGQLKTFNC  186 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~g~i~lwd~  186 (612)
                      ...+++||.||++.++++..|+|.+.
T Consensus         6 ~~~~l~WS~Dg~laV~t~~~v~IL~~   31 (173)
T PF12657_consen    6 CPNALAWSEDGQLAVATGESVHILDP   31 (173)
T ss_pred             CCcCeeECCCCCEEEEcCCeEEEEec
Confidence            34678888888777777788888843

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.51  E-value=3  Score=26.79  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=17.2

Q ss_pred             eeEEEEcCCCCEEEEEeC-C--CcEEEE
Q 007234            8 DILTSFSPALDYFAICSG-D--ARIKIW   32 (612)
Q Consensus         8 ~l~~~fspdg~~las~s~-d--g~i~iw   32 (612)
                      ..+.+|||||++|+.++. +  |.-.||
T Consensus        11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            356799999999987664 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.22  E-value=34  Score=37.67  Aligned_cols=180  Identities=16%  Similarity=0.168  Sum_probs=90.8

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE----ecCCCCeeEEEECCCCC
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----RASTKGISCMAVSSDGK  172 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~~v~~l~~spdg~  172 (612)
                      .|+||+.. |+.+.++.-.|. .+.++.|+.+. .|++...||+++++++. |+.+...    ......|..+.+..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence            37777764 555444443354 78899999765 57777899999999974 3333321    22223455555555777


Q ss_pred             EEEEeCCeEEEEEcCCCeeEEEEec---CCCCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          173 MLATAAGQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       173 ~l~~~~g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      .+.+.+|.+.+-+-.....+++++.   ...+-+|-...+++.   .++-.....+ ..++........    ...+..+
T Consensus       141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q----~~~~~~~  215 (829)
T KOG2280|consen  141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQ----LHALSWP  215 (829)
T ss_pred             EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccc----ccccCCC
Confidence            7777776655543222212233322   111212222222221   1111100000 012222222111    1111122


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      ...+.-+..+     |+.++|+--+.+|.|.+-+.+..+.+-.+
T Consensus       216 ~~~~~ki~VS-----~n~~~laLyt~~G~i~~vs~D~~~~lce~  254 (829)
T KOG2280|consen  216 NSSVVKISVS-----PNRRFLALYTETGKIWVVSIDLSQILCEF  254 (829)
T ss_pred             CceEEEEEEc-----CCcceEEEEecCCcEEEEecchhhhhhcc
Confidence            1222223344     88999999999999999887776655433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.02  E-value=43  Score=33.88  Aligned_cols=99  Identities=19%  Similarity=0.307  Sum_probs=56.3

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEECCCCce---eEEEe----cCCCCeeEEEECCC----CCEEEEeC---------
Q 007234          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFR----ASTKGISCMAVSSD----GKMLATAA---------  178 (612)
Q Consensus       119 ~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~----~~~~~v~~l~~spd----g~~l~~~~---------  178 (612)
                      ..++|+|.|||+.++ +...|.|++++ ..+..   +..+.    ........++++|+    +.+.++.+         
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            457899999987655 45699999999 45543   22221    23347899999994    33333222         


Q ss_pred             -CeEEEEEcCCC-------ee-EEEEec---CCCCEEEEEEeeCCcEEEEEEc
Q 007234          179 -GQLKTFNCSDH-------KK-MQKFSG---HPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       179 -g~i~lwd~~~~-------~~-~~~~~~---h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                       ..|.-|....+       +. +..+..   ....-..|.|.|||.+.++.|+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             13444444333       11 222232   2334567999999987777663

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	612
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.27
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.25
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.13
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.07
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.03
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.01
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.84
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.84
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.82
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.7
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.63
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.46
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.45
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.39
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.34
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.34
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.33
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.25
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.16
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.06
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.06
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.03
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.01
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.01
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.99
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.82
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.81
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.7
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.62
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.61
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.59
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.53
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.44
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.4
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.4
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.32
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.19
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.01
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.01
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.97
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.92
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.83
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.62
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.46
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.37
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.35
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.01
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.74
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.5
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.49
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.04
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.88
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.81
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.67
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.49
3ott_A	758	Two-component system sensor histidine kinase; beta	94.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.82
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.38
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.78
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.44
3ott_A	758	Two-component system sensor histidine kinase; beta	90.0
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.51
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	80.69

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-41  Score=352.01  Aligned_cols=281  Identities=15%  Similarity=0.258  Sum_probs=250.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|+++  +|+|++++|++|+.||+|+|||+.+++....+.+|...+.++.|+++                       
T Consensus       107 h~~~V~~~--~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-----------------------  161 (410)
T 1vyh_C          107 HRSPVTRV--IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-----------------------  161 (410)
T ss_dssp             CSSCEEEE--EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred             cCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-----------------------
Confidence            45788655  99999999999999999999999999999999988887777777666                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.++++|+.||.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.|++|++||+.+++++.++.+|...
T Consensus       162 ----~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          162 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence                889999999999999999999988666 689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC--------------------CcEEEEEEc
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAV  219 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~--------------------~~~l~s~s~  219 (612)
                      |.++.++|+|+++++++  +.|++||+.++++...+.+|...|.+++|+|+                    |.++++++ 
T Consensus       237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-  315 (410)
T 1vyh_C          237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-  315 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-
Confidence            99999999999999998  89999999999999999999999999999996                    66888887 


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (612)
                      .|+.|++||+.++..     +..+..+...+..+.|+     |+|.+|++++.||.|++||+.+++.+.           
T Consensus       316 ~D~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~~-----------  374 (410)
T 1vyh_C          316 RDKTIKMWDVSTGMC-----LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCMK-----------  374 (410)
T ss_dssp             TTSEEEEEETTTTEE-----EEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCCE-----------
T ss_pred             CCCeEEEEECCCCce-----EEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceEE-----------
Confidence            799999999998763     34555566667778887     999999999999999999976543321           


Q ss_pred             ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                                  .+.+|...|++++|+|++.+| +|||.|+++++|+.
T Consensus       375 --------------------------------------------~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          375 --------------------------------------------TLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC  409 (410)
T ss_dssp             --------------------------------------------EEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred             --------------------------------------------EEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence                                                        445688899999999999999 99999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.9e-40  Score=336.60  Aligned_cols=282  Identities=15%  Similarity=0.188  Sum_probs=243.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|.++  +|+|||++|++|+.||+|+|||..+++.+..+..|...+.++.|+++                       
T Consensus        54 H~~~v~~~--~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------  108 (340)
T 1got_B           54 HLAKIYAM--HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-----------------------  108 (340)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-----------------------
T ss_pred             CCCceEEE--EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-----------------------
Confidence            46788655  99999999999999999999999999999999888777766666665                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                          +.++++|+.||.|++|++.++.   .......+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|
T Consensus       109 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h  183 (340)
T 1got_B          109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             ----CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence                8899999999999999998763   22233468999999999998875 899999999999999999999999999


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      ...|.+++|+|+++++++|+  |.|++||+++++++..+.+|...|.+++|+|++++|++++ .|+.|++||++.++.. 
T Consensus       184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~-  261 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE-
Confidence            99999999999999999988  8999999999999999999999999999999999999998 7999999999887643 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                        ..+........+..+.|+     |+|.+|++|+.||.|++||..+++.+                             
T Consensus       262 --~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~-----------------------------  305 (340)
T 1got_B          262 --MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA-----------------------------  305 (340)
T ss_dssp             --EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE-----------------------------
T ss_pred             --EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe-----------------------------
Confidence              122222222356778887     99999999999999999997654331                             


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                ..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus       306 --------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd  340 (340)
T 1got_B          306 --------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             --------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             --------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence                                      1455788899999999999999 9999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.1e-40  Score=360.68  Aligned_cols=347  Identities=17%  Similarity=0.187  Sum_probs=264.6

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccc------------------
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER------------------   61 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~------------------   61 (612)
                      |..+|+++  +|||||++||+|+.||+|+|||+.+++  ....+.+|.+.+.++.|+++-..                  
T Consensus        58 h~~~v~~~--~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd  135 (611)
T 1nr0_A           58 HSHQTTVA--KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD  135 (611)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             CCCceEEE--EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence            45678555  999999999999999999999997543  55678899999999999876110                  


Q ss_pred             ---------cccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE
Q 007234           62 ---------EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI  132 (612)
Q Consensus        62 ---------~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l  132 (612)
                               +| ...+.++.|.|..        ...+++|+.|+.|++||..++++...+ .+|...|++++|+|+|++|
T Consensus       136 ~~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~l  205 (611)
T 1nr0_A          136 TGTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLF  205 (611)
T ss_dssp             TCCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEE
T ss_pred             CCCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEE
Confidence                     00 1123444444432        346999999999999999998887666 6899999999999999999


Q ss_pred             EEEecCCcEEEEECCCCceeEEEe-------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE----------
Q 007234          133 YSAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ----------  193 (612)
Q Consensus       133 ~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~----------  193 (612)
                      ++|+.|++|++||+.+++.+..+.       +|...|.+++|+|+|++|++++  ++|++||+.+++.+.          
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            999999999999999999988884       6889999999999999999998  899999999876543          


Q ss_pred             ---------------------------------EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce--
Q 007234          194 ---------------------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--  238 (612)
Q Consensus       194 ---------------------------------~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--  238 (612)
                                                       .+.+|...|.+++|+|+|++|++++ .|+.|++||+.++......  
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~  364 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPD  364 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSC
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeccc
Confidence                                             3457999999999999999999998 7999999999865421000  


Q ss_pred             ----ee-----------E--------------------------eec---------C-----------------------
Q 007234          239 ----CV-----------L--------------------------AME---------H-----------------------  245 (612)
Q Consensus       239 ----~~-----------~--------------------------~~~---------~-----------------------  245 (612)
                          .+           .                          .+.         .                       
T Consensus       365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~  444 (611)
T 1nr0_A          365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE  444 (611)
T ss_dssp             SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred             CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence                00           0                          000         0                       


Q ss_pred             --CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee--cccCCceeEeecccccCCCCcccchhhhcccccc
Q 007234          246 --PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (612)
Q Consensus       246 --~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~  321 (612)
                        +...+.+++|+     |||++|++++.||+|++||+.++...  .. ......+.+. .|+|+++    .+++++.|+
T Consensus       445 ~~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v-~fspdg~----~las~s~d~  513 (611)
T 1nr0_A          445 VPISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV-AFSNNGA----FLVATDQSR  513 (611)
T ss_dssp             EECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE-EECTTSS----EEEEEETTS
T ss_pred             eecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE-EECCCCC----EEEEEcCCC
Confidence              00112345565     99999999999999999998775431  11 1111222222 2899998    899999988


Q ss_pred             eecCCCceEEEEeCCccCceEEE--eeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          322 IVKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      .+++|+..       ........  ..+|...|.+++|||||++| +|||.|+++++|++.
T Consensus       514 ~v~~w~~~-------~~~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~  566 (611)
T 1nr0_A          514 KVIPYSVA-------NNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN  566 (611)
T ss_dssp             CEEEEEGG-------GTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred             CEEEEEcC-------CCCceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECC
Confidence            77766521       00111111  23499999999999999999 999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=329.46  Aligned_cols=281  Identities=14%  Similarity=0.169  Sum_probs=243.6

Q ss_pred             CCcccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcE--EEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |..+|+++  +|+|+    +++|++|+.|++|+|||+.+++.  ...+.+|...+.++.|+++                 
T Consensus        31 H~~~V~~v--~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-----------------   91 (321)
T 3ow8_A           31 HDDAIWSV--AWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-----------------   91 (321)
T ss_dssp             SSSCEEEE--EEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------------
T ss_pred             CCCcEEEE--EEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------------
Confidence            56788655  99985    67999999999999999987764  4456777776666655555                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                                +.++++|+.||.|++||+.+++.+..+ ..|...+.+++|+|++++|++++.||.|++||+.+++....+
T Consensus        92 ----------~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           92 ----------LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             ----------CCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence                      788999999999999999999998776 568889999999999999999999999999999999999999


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..+...+.+++|+|+|++|++++  |.|++||+++++.+..+.+|..+|.+++|+|++++|++++ .|+.|++||+.+++
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence            99989999999999999999998  8999999999999999999999999999999999999987 79999999998876


Q ss_pred             cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      ..     ..+..+...+..+.|+     |++.+|++++.||.|++||+.+++.+.                         
T Consensus       240 ~~-----~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------  284 (321)
T 3ow8_A          240 LA-----GTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH-------------------------  284 (321)
T ss_dssp             EE-----EEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred             ee-----EEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE-------------------------
Confidence            33     4455566666778887     999999999999999999987665432                         


Q ss_pred             hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                    ++..|...|.+++|+|||.+| ++++.|+++++|+.
T Consensus       285 ------------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          285 ------------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC  319 (321)
T ss_dssp             ------------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred             ------------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence                                          344577789999999999999 99999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.2e-39  Score=330.75  Aligned_cols=282  Identities=15%  Similarity=0.188  Sum_probs=242.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|.  |++|+||+++||+|+.||+|+|||..+++....+..+...+.++.|+++                       
T Consensus        63 H~~~V~--~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-----------------------  117 (354)
T 2pbi_B           63 HGNKVL--CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-----------------------  117 (354)
T ss_dssp             CSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-----------------------
T ss_pred             CCCeEE--EEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-----------------------
Confidence            567885  4599999999999999999999999999999888887777777777666                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCe------EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                          +..+++|+.|+.+++|++....      ....+ .+|...|.+++|+|++..|++++.|++|++||+.+++++..+
T Consensus       118 ----g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          118 ----GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             ----SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----CCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence                8899999999999999986541      22223 579999999999999999999999999999999999999999


Q ss_pred             ecCCCCeeEEEECC--CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          156 RASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       156 ~~~~~~v~~l~~sp--dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .+|...|.+++|+|  +|+++++|+  |.|++||+++++++..+.+|...|.+++|+|++.+|++++ .|++|++||++.
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~  271 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA  271 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence            99999999999987  578999988  9999999999999999999999999999999999999998 799999999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  311 (612)
                      ....   ..+........+..+.|+     |+|.+|++++.||.|++||+.+++.+.                       
T Consensus       272 ~~~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~~-----------------------  320 (354)
T 2pbi_B          272 DREV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRVS-----------------------  320 (354)
T ss_dssp             TEEE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEEE-----------------------
T ss_pred             CcEE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceEE-----------------------
Confidence            7533   222222223345677787     999999999999999999986654321                       


Q ss_pred             hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                      .+.+|...|.+++|||||++| ++||.|+++++|+
T Consensus       321 --------------------------------~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 --------------------------------ILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA  354 (354)
T ss_dssp             --------------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred             --------------------------------EEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence                                            345688899999999999999 9999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-38  Score=350.96  Aligned_cols=326  Identities=15%  Similarity=0.169  Sum_probs=260.4

Q ss_pred             CCcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +..+|+++  +|+|++. .|++|+.|++|++||..++++...+.+|...+.++.|+++                      
T Consensus       146 h~~~v~~v--~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----------------------  201 (611)
T 1nr0_A          146 QARAMNSV--DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----------------------  201 (611)
T ss_dssp             CSSCEEEE--EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT----------------------
T ss_pred             CCCCceEE--EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC----------------------
Confidence            35677555  9999997 5999999999999999999999999999888888888777                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEecc------CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                           +.++++|+.||.|++||+.+++....+..      +|.+.|.+++|+|+|++|++++.|++|++||+.+++++.+
T Consensus       202 -----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~  276 (611)
T 1nr0_A          202 -----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT  276 (611)
T ss_dssp             -----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             -----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence                 88999999999999999999998876643      7999999999999999999999999999999998766543


Q ss_pred             -------------------------------------------EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC
Q 007234          155 -------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH  189 (612)
Q Consensus       155 -------------------------------------------~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~  189 (612)
                                                                 +.+|...|++++|+|+|++|++++  ++|++||+.++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence                                                       346778999999999999999998  89999999876


Q ss_pred             eeEEEE-e------------------------------------------------------------------------
Q 007234          190 KKMQKF-S------------------------------------------------------------------------  196 (612)
Q Consensus       190 ~~~~~~-~------------------------------------------------------------------------  196 (612)
                      +....+ .                                                                        
T Consensus       357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~  436 (611)
T 1nr0_A          357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI  436 (611)
T ss_dssp             CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred             ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence            543221 0                                                                        


Q ss_pred             ---------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE
Q 007234          197 ---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV  267 (612)
Q Consensus       197 ---------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (612)
                               .|...+.+++|+|+|+++++++ .|+.|++||+.++...   ......| ...+..+.|+     |+|++|
T Consensus       437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~~~h-~~~v~~v~fs-----pdg~~l  506 (611)
T 1nr0_A          437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVH-PAEITSVAFS-----NNGAFL  506 (611)
T ss_dssp             EETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEEC-SSCEEEEEEC-----TTSSEE
T ss_pred             EeCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeeccCC-CCceEEEEEC-----CCCCEE
Confidence                     1234577899999999999988 7999999999876432   2223334 4456778887     999999


Q ss_pred             EEEecCCcEEEEECCC-cceecc--cCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEE
Q 007234          268 LAISETGVCYIWYGQN-IEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK  344 (612)
Q Consensus       268 ~t~s~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~  344 (612)
                      ++++.|++|++|++.+ ++.+..  ...+...+.+.. |+|+++    .+++|+.|+.+++|+..    .+.  ......
T Consensus       507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~----~lasgs~D~~v~lW~~~----~~~--~~~~~~  575 (611)
T 1nr0_A          507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNV----RLATGSLDNSVIVWNMN----KPS--DHPIII  575 (611)
T ss_dssp             EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSS----EEEEEETTSCEEEEETT----CTT--SCCEEE
T ss_pred             EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCC----EEEEEECCCcEEEEECC----Ccc--cccchh
Confidence            9999999999999987 554432  111223333333 899998    89999998887776621    111  111234


Q ss_pred             eecc-CCCeEEEEecCCCceEeccccceeeecceee
Q 007234          345 ILVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       345 ~~~h-~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +.+| ...|.+++|+|||+ | +|++.|+++++|++
T Consensus       576 ~~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          576 KGAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV  609 (611)
T ss_dssp             TTSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred             hccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence            5678 78899999999999 7 99999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.9e-38  Score=314.66  Aligned_cols=281  Identities=14%  Similarity=0.222  Sum_probs=236.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ++.+|+++  +|+|||++|++|+.||+|++||+.++..+..+..|...+.+..|+++                       
T Consensus        12 h~~~V~~~--~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------   66 (304)
T 2ynn_A           12 RSDRVKGI--DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-----------------------   66 (304)
T ss_dssp             ECSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-----------------------
T ss_pred             CCCceEEE--EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-----------------------
Confidence            35678655  99999999999999999999999999999999888777776666665                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~  160 (612)
                          ++++++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++|+.|++|++||++++ .....+.+|..
T Consensus        67 ----~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           67 ----KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             ----GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             ----CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence                789999999999999999999998776 579999999999999999999999999999999887 45667889999


Q ss_pred             CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      .|.+++|+| ++.++++|+  ++|++||++++.....+ .+|...+..+.|+|  ++.+|++++ .|++|++||+++++ 
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~-  219 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS-  219 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE-
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc-
Confidence            999999999 678999988  89999999888765555 45668899999987  678999987 79999999999876 


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i  314 (612)
                          ++..+..+...+..+.|+     |++.+|++++.||.|++||..+++.++                          
T Consensus       220 ----~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~~~--------------------------  264 (304)
T 2ynn_A          220 ----CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEK--------------------------  264 (304)
T ss_dssp             ----EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCEEE--------------------------
T ss_pred             ----cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCceee--------------------------
Confidence                345566666667778887     999999999999999999987765432                          


Q ss_pred             hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc--eEeccccceeeecceeee
Q 007234          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV--LLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~--~l~~s~s~d~~~~~w~~~  380 (612)
                                                   ++..|...+++++++|+|.  ++ ++|++|+ +.+|.++
T Consensus       265 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~-asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          265 -----------------------------TLNVGLERSWCIATHPTGRKNYI-ASGFDNG-FTVLSLG  301 (304)
T ss_dssp             -----------------------------EECCSSSSEEEEEECTTCGGGCE-EEEETTE-EEEEECC
T ss_pred             -----------------------------eccCCCccEEEEEECCCCCceEE-EEecCCc-eEEEEec
Confidence                                         3334555789999998885  45 7776554 5666653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.1e-37  Score=309.98  Aligned_cols=281  Identities=22%  Similarity=0.319  Sum_probs=239.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |..+|+++  +|+|+|++||+|+.||.|++||..+++....+.+|...+.++.|+++                       
T Consensus        22 h~~~v~~~--~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   76 (312)
T 4ery_A           22 HTKAVSSV--KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----------------------   76 (312)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             cCCcEEEE--EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-----------------------
Confidence            45788655  99999999999999999999999999999999887776666666555                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          ++++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+
T Consensus        77 ----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  151 (312)
T 4ery_A           77 ----SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP  151 (312)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence                889999999999999999999988766 579999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      |.+++|+|+++++++++  |.|++||+++++.+..+. .+..++..++|+|+++++++++ .|+.|++||+.+++..   
T Consensus       152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---  227 (312)
T 4ery_A          152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL---  227 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---
Confidence            99999999999999988  899999999998887764 5667899999999999999987 7999999999987643   


Q ss_pred             eeEeec-CCc--eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          239 CVLAME-HPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       239 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                        ..+. |..  ..+......     +++.+|++++.||.|++||+.+++.+.                           
T Consensus       228 --~~~~~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~---------------------------  273 (312)
T 4ery_A          228 --KTYTGHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ---------------------------  273 (312)
T ss_dssp             --EEECSSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE---------------------------
T ss_pred             --EEEEecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh---------------------------
Confidence              2222 221  122222333     678999999999999999987654321                           


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccc--ceeeecceee
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV  379 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s--~d~~~~~w~~  379 (612)
                                                  .+.+|...|.+++|+|++.++ ++++  .|+++++|+.
T Consensus       274 ----------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          274 ----------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS  310 (312)
T ss_dssp             ----------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred             ----------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence                                        445677789999999999999 7775  6999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.8e-37  Score=337.32  Aligned_cols=315  Identities=20%  Similarity=0.271  Sum_probs=266.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|..+  +|+|||++|++++.|+.|++||. +++....+.+|...+.++.|+++                       
T Consensus       261 ~~~~v~~v--~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~-----------------------  314 (577)
T 2ymu_A          261 HSSSVNGV--AFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD-----------------------  314 (577)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCCEEEE--EEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC-----------------------
Confidence            34677555  99999999999999999999996 57788888888877777777666                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..+++++.||.|++||....... .+ .+|...|.+++|+|+++++++++.|+.|++||. +++.+..+..|...
T Consensus       315 ----~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~  387 (577)
T 2ymu_A          315 ----GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  387 (577)
T ss_dssp             ----SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC
Confidence                889999999999999998765543 44 579999999999999999999999999999994 67888999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      |.+++|+|+|++|++++  +.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||....      .
T Consensus       388 v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~------~  459 (577)
T 2ymu_A          388 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ------L  459 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC------E
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC------E
Confidence            99999999999999987  89999995 6778889999999999999999999999987 7999999997543      2


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~  319 (612)
                      ...+..+...+..++|+     |++++|++++.|+.|++||. +++.++....+...+.+.. |+|+++    .+++++.
T Consensus       460 ~~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~-~s~dg~----~l~s~~~  528 (577)
T 2ymu_A          460 LQTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASD  528 (577)
T ss_dssp             EEEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSS----CEEEEET
T ss_pred             EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE-EcCCCC----EEEEEEC
Confidence            33444555667778887     99999999999999999995 5666655554444444333 788988    8999999


Q ss_pred             cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                      |+.+++||.         .......+.+|...|++++|+|||++| +|+|.|+++++|+
T Consensus       529 dg~v~lwd~---------~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          529 DKTVKLWNR---------NGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN  577 (577)
T ss_dssp             TSEEEEECT---------TSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             cCEEEEEeC---------CCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence            888877761         234566888999999999999999999 9999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.2e-37  Score=309.90  Aligned_cols=287  Identities=15%  Similarity=0.148  Sum_probs=238.2

Q ss_pred             CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |.++|.++  +|+|++ ++|++|+.|++|++||+.+     +..+..+.+|...+.++.|+++                 
T Consensus        16 H~~~V~~l--~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----------------   76 (319)
T 3frx_A           16 HNGWVTSL--ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-----------------   76 (319)
T ss_dssp             CSSCEEEE--EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred             ccceEEEE--EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-----------------
Confidence            56788665  999965 8999999999999999864     3456778888887777777766                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                                +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||++ ++++..+
T Consensus        77 ----------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~  144 (319)
T 3frx_A           77 ----------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL  144 (319)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred             ----------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence                      889999999999999999999988776 5799999999999999999999999999999985 6678888


Q ss_pred             ecCCCCeeEEEECCC------CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          156 RASTKGISCMAVSSD------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       156 ~~~~~~v~~l~~spd------g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      .+|...|.+++++|.      +..+++++  +.|++||+++++....+.+|...|.+++|+|+|++|++++ .|+.|++|
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iw  223 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW  223 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Confidence            899999999999985      44788887  8999999999999999999999999999999999999998 79999999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~  307 (612)
                      |+.+++..     ..+.++. .+..++|+     |++.++++++.+ .+++|++.....+....+.             .
T Consensus       224 d~~~~~~~-----~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~-------------~  278 (319)
T 3frx_A          224 NLAAKKAM-----YTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE-------------F  278 (319)
T ss_dssp             ETTTTEEE-----EEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECCC-------------C
T ss_pred             ECCCCcEE-----EEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc-------------c
Confidence            99987643     4444444 45667787     999999888765 5999998766544321111             0


Q ss_pred             cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      .            +                      ....|...+.+++|||||++| ++|+.|+.+++|++.
T Consensus       279 ~------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          279 A------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM  316 (319)
T ss_dssp             T------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred             c------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence            0            0                      011344578899999999999 999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.9e-38  Score=327.82  Aligned_cols=289  Identities=16%  Similarity=0.237  Sum_probs=242.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|+++  +|+|+|++||+|+.||+|+|||+.+++....+..|...+.++.|+++                       
T Consensus        65 H~~~V~~~--~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  119 (380)
T 3iz6_a           65 HSGKVYSL--DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-----------------------  119 (380)
T ss_dssp             CSSCEEEE--EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-----------------------
T ss_pred             cccEEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-----------------------
Confidence            46788655  99999999999999999999999999999999999988888888877                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCe------EEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEE
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                          +.++++|+.|+.|++||+.+..      .......+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..
T Consensus       120 ----g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          120 ----GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             ----SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             ----CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence                8899999999999999997532      1223446899999999999964 5699999999999999999999888


Q ss_pred             E-----ecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcC-CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          155 F-----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       155 ~-----~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      +     .+|...|.+++|+| ++.++++|+  +.|++||++ +++.+..+.+|.+.|.+++|+|++++|++++ .|++|+
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~  274 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCR  274 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence            7     56788999999987 889999988  899999998 4577889999999999999999999999987 799999


Q ss_pred             EEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecc
Q 007234          226 LWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (612)
                      +||+.++...   ..+...     .....+..++|+     |+|++|++|+.||.|++||..+++.+....         
T Consensus       275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------  337 (380)
T 3iz6_a          275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLG---------  337 (380)
T ss_dssp             EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEEC---------
T ss_pred             EEECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEe---------
Confidence            9999988644   112111     112235677887     999999999999999999987665432100         


Q ss_pred             cccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       301 ~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                         .       ...+|.+.|.+++|||||.+| +|||.|+++++|++.
T Consensus       338 -----------------------------------~-------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          338 -----------------------------------T-------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -----------------------------------C-------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECC
T ss_pred             -----------------------------------c-------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecC
Confidence                                               0       012577789999999999999 999999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=314.31  Aligned_cols=294  Identities=14%  Similarity=0.148  Sum_probs=230.3

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE---eeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +|+.+  +|||||++||+|+.||+|+|||+.++.....   ..+|...+.++.|+++                       
T Consensus        18 ~v~~l--~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------------------   72 (345)
T 3fm0_A           18 RCWFL--AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-----------------------   72 (345)
T ss_dssp             CEEEE--EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-----------------------
T ss_pred             cEEEE--EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-----------------------
Confidence            67555  9999999999999999999999988864322   2455555555555544                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc---eeEEEe
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFR  156 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~  156 (612)
                          +.+|++|+.||.|++|++..+.  ++..+ .+|...|.+++|+|++++|++|+.|++|++||+.++.   ++..+.
T Consensus        73 ----g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  147 (345)
T 3fm0_A           73 ----GNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN  147 (345)
T ss_dssp             ----SSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred             ----CCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence                8899999999999999998774  34344 6899999999999999999999999999999998763   456778


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .|...|.+++|+|++++|++++  +.|++||.++++  +...+.+|...|.+++|+|+|++|++++ .|++|++|+....
T Consensus       148 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~  226 (345)
T 3fm0_A          148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLP  226 (345)
T ss_dssp             CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECT
T ss_pred             CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccC
Confidence            8999999999999999999998  899999998875  4578899999999999999999999998 7999999997443


Q ss_pred             cccc----------ceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeeccc
Q 007234          233 KKQS----------ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED  301 (612)
Q Consensus       233 ~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  301 (612)
                      ....          ..++..+. .+...+..+.|+     +++..|++++.|+.|++|+.........            
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------  289 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQ------------  289 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTS------------
T ss_pred             CCCccceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCcce------------
Confidence            2110          11222222 244556667777     8999999999999999999765432100            


Q ss_pred             ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-eEeccccceeeecceeee
Q 007234          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~-~l~~s~s~d~~~~~w~~~  380 (612)
                         +..                               ........+|...|.+++|+|++. +| +|||.|+++++|+..
T Consensus       290 ---~~~-------------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          290 ---PTF-------------------------------SLTAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             ---CCE-------------------------------EEEEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEEC
T ss_pred             ---eeE-------------------------------EEEeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEec
Confidence               000                               000112346888999999999985 77 999999999999984


Q ss_pred             c
Q 007234          381 N  381 (612)
Q Consensus       381 ~  381 (612)
                      +
T Consensus       335 ~  335 (345)
T 3fm0_A          335 R  335 (345)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.2e-38  Score=321.47  Aligned_cols=290  Identities=11%  Similarity=0.081  Sum_probs=222.3

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..|.++  +|||||++|++++ |+++++||..    +..+......... .+..  ........+.+++|.+        
T Consensus        31 ~~v~~~--~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~-~~~~--~~~~~~~~v~~~~~s~--------   92 (344)
T 4gqb_B           31 RQLEAA--RYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNE-GFCS--AGVQTEAGVADLTWVG--------   92 (344)
T ss_dssp             SEEEEE--EECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCG-GGCS--EEEEESSCEEEEEEET--------
T ss_pred             CCEEEE--EECCCCCEEEEEe-CCceEEeece----eeeeccccccCCc-ceee--eeeccCCCEEEEEEeC--------
Confidence            456544  9999999999887 7788999732    1222111100000 0000  0000123467788876        


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEE---eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                        +..+++|+.||.|+|||+.+++.+..   ...+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|..
T Consensus        93 --d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 --ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             --TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             --CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence              34688999999999999999875432   2358999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCC-cEEEEEEcCCCeEEEEEcCCCcc
Q 007234          161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       161 ~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~-~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      .|.+++|+|++. ++++++  ++|++||+++++....+.  .|...+.+++|+|++ +++++++ .|+.|++||+++++.
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC  249 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence            999999999885 677776  899999999999887764  456679999999954 5677776 799999999998764


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      .     ..+..+...+..++|+     |++ ++|++++.||+|++||..+++.+                          
T Consensus       250 ~-----~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~--------------------------  293 (344)
T 4gqb_B          250 V-----LSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF--------------------------  293 (344)
T ss_dssp             C-----EEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred             E-----EEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence            3     4555666677788887     887 57999999999999997655321                          


Q ss_pred             hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                    .+.+|.+.|.+++|||||..+++|+|.|+++++|++.
T Consensus       294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence                                          2346888999999999998664899999999999884

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-36  Score=317.64  Aligned_cols=303  Identities=16%  Similarity=0.221  Sum_probs=235.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.++|.+  ++|||||++||+|+ +++++||++.+++.+..+..+.....................+.++.|.+.     
T Consensus        63 h~~~V~~--v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-----  134 (393)
T 1erj_A           63 HTSVVCC--VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-----  134 (393)
T ss_dssp             CSSCCCE--EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-----
T ss_pred             CCCEEEE--EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-----
Confidence            4567854  49999999999986 789999999999998888655422110000000000001123567777664     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          ++++++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++|+.|++|++||++++++...+. +...
T Consensus       135 ----g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~  208 (393)
T 1erj_A          135 ----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG  208 (393)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred             ----CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence                789999999999999999999988666 6899999999999999999999999999999999999888876 4567


Q ss_pred             eeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEE-------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       162 v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      +.+++|+| +++++++++  |.|++||+++++.+..+       .+|...|.+++|+|+|++|++++ .|+.|++||+..
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~  287 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQN  287 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC--
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCC
Confidence            99999999 899999988  89999999999887776       68999999999999999999987 799999999986


Q ss_pred             Cccc-------cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccC
Q 007234          232 VKKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS  304 (612)
Q Consensus       232 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s  304 (612)
                      ....       ...+...+..+...+..++++     +++.+|++++.||.|++||..+++.+.                
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~----------------  346 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL----------------  346 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE----------------
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE----------------
Confidence            5321       012333444455556677787     899999999999999999987664321                


Q ss_pred             CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC------CCceEeccccceeeeccee
Q 007234          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~------dg~~l~~s~s~d~~~~~w~  378 (612)
                                                             .+.+|...|.+++|++      ++.+| +|||.|+++++|+
T Consensus       347 ---------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW~  386 (393)
T 1erj_A          347 ---------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWK  386 (393)
T ss_dssp             ---------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEE
T ss_pred             ---------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEECc
Confidence                                                   3456777888888775      78889 9999999999998


Q ss_pred             ee
Q 007234          379 VQ  380 (612)
Q Consensus       379 ~~  380 (612)
                      ..
T Consensus       387 ~~  388 (393)
T 1erj_A          387 YK  388 (393)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-37  Score=319.02  Aligned_cols=282  Identities=12%  Similarity=0.113  Sum_probs=218.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEe----eccCCccccccccccccccccccceeEE
Q 007234            2 GSSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCM   71 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~------dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~   71 (612)
                      +...|+++  +|||||++||+|+.      |++|++|+..++.....+    ..|.                  ..+.++
T Consensus        41 H~~~V~~v--~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~V~~~  100 (357)
T 4g56_B           41 MEVQIGAV--RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE------------------AGVTDV  100 (357)
T ss_dssp             CCSEEEEE--EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS------------------SCEEEE
T ss_pred             ccCCEEEE--EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC------------------CCEEEE
Confidence            45678656  99999999999997      778999988776543222    1222                  235667


Q ss_pred             EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEE---eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~  148 (612)
                      +|.+.         + .+++++.+|.|+|||+.+++....   ...+|...|++++|+|++++|++|+.|++|++||+.+
T Consensus       101 ~~s~d---------~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B          101 AWVSE---------K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             EEETT---------T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEcCC---------C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            77653         3 467789999999999998875422   2247999999999999999999999999999999999


Q ss_pred             CceeEEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCC-cEEEEEEcCCC
Q 007234          149 GSLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNG-KYVLSSAVGER  222 (612)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~-~~l~s~s~~d~  222 (612)
                      ++.+..+.+|...|.+++|+|++. ++++++  |.|++||++++++...+  ..|...+.+++|+|++ .+|++++ .|+
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~  249 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETG  249 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSS
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-ccc
Confidence            999999999999999999999875 566665  89999999998876654  4567789999999985 5666666 799


Q ss_pred             eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCcceecccCCceeEeeccc
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED  301 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  301 (612)
                      .|++||+.+++..     ..+..+...+..++|+     |++ ++|++++.||+|+|||+++++.+              
T Consensus       250 ~i~~wd~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~--------------  305 (357)
T 4g56_B          250 NVSLVNIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVF--------------  305 (357)
T ss_dssp             CEEEEESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEE--------------
T ss_pred             ceeEEECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEe--------------
Confidence            9999999987644     4455566667778887     776 67999999999999998766432              


Q ss_pred             ccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC-CCceEeccccceeeecceeee
Q 007234          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~-dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                                ...+|...|.+++||| |+.+| +|+|.|+++++|++.
T Consensus       306 ------------------------------------------~~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          306 ------------------------------------------RDLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ------------------------------------------EECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred             ------------------------------------------EECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence                                                      1225777899999998 89999 999999999999984


Q ss_pred             c
Q 007234          381 N  381 (612)
Q Consensus       381 ~  381 (612)
                      .
T Consensus       343 ~  343 (357)
T 4g56_B          343 S  343 (357)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.7e-36  Score=304.71  Aligned_cols=292  Identities=14%  Similarity=0.121  Sum_probs=228.5

Q ss_pred             CCcccceeEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeeccCCccccccccccccccccccce
Q 007234            2 GSSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDY   68 (612)
Q Consensus         2 ~s~~V~~l~~~f-----sp-dg~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~   68 (612)
                      |..+|+++  +|     +| |+++||+|+.|++|+|||+.++       .....+.+|...+.++.|+++          
T Consensus        20 H~~~V~~~--~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~----------   87 (343)
T 2xzm_R           20 HSDWVTSI--VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE----------   87 (343)
T ss_dssp             CSSCEEEE--EECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----------
T ss_pred             chhhhhhe--eeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----------
Confidence            56788666  88     76 9999999999999999998753       456667777776666666655          


Q ss_pred             eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~  148 (612)
                                       +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++|+.|++|++||+..
T Consensus        88 -----------------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           88 -----------------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             -----------------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             -----------------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence                             789999999999999999999988776 57999999999999999999999999999999974


Q ss_pred             CceeEEEe---cCCCCeeEEEECCCC----------CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcE
Q 007234          149 GSLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       149 ~~~~~~~~---~~~~~v~~l~~spdg----------~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~  213 (612)
                       +......   .|...|.+++|+|++          .++++++  |.|++|| .+.+....+.+|...|.+++|+|+|++
T Consensus       150 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          150 -ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             -CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             -CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence             3333333   577789999999987          6888887  8999999 456778889999999999999999999


Q ss_pred             EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      |++++ .|+.|++||+......    ...+.+. ..+..++|+     |++.++++ +.|+.|++|++.+++.....   
T Consensus       228 l~sgs-~dg~v~iwd~~~~~~~----~~~~~~~-~~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~---  292 (343)
T 2xzm_R          228 IATGG-KDKKLLIWDILNLTYP----QREFDAG-STINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC---  292 (343)
T ss_dssp             EEEEE-TTCEEEEEESSCCSSC----SEEEECS-SCEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE---
T ss_pred             EEEEc-CCCeEEEEECCCCccc----ceeecCC-CcEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE---
Confidence            99998 7999999999544322    1222222 236677887     88887764 56888999998876543200   


Q ss_pred             eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (612)
Q Consensus       294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~  373 (612)
                        ..      .+...      .                         ..+...+|...|.+++|+|||++| ++|+.|++
T Consensus       293 --~~------~~~~~------~-------------------------~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~  332 (343)
T 2xzm_R          293 --TI------EAEPI------T-------------------------KAEGQKGKNPQCTSLAWNALGKKL-FAGFTDGV  332 (343)
T ss_dssp             --EC------CCCSG------G-------------------------GBTTBCCSCCCEEEEEECSSSCCE-EEEETTSE
T ss_pred             --Ee------ecCcc------h-------------------------hhhhhcCCCCceEEEEECCCCCeE-EEecCCce
Confidence              00      00000      0                         000123577789999999999999 99999999


Q ss_pred             ecceeee
Q 007234          374 KRGRYVQ  380 (612)
Q Consensus       374 ~~~w~~~  380 (612)
                      +++|++.
T Consensus       333 v~~w~~~  339 (343)
T 2xzm_R          333 IRTFSFE  339 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-36  Score=317.04  Aligned_cols=338  Identities=15%  Similarity=0.230  Sum_probs=257.6

Q ss_pred             CcccceeEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCc------EEEEeeccCCccccccccccccccccccceeEE
Q 007234            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (612)
Q Consensus         3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~----~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~   71 (612)
                      .++|.++  +|+|+|+ +||+|+.||.|++||+    .+++      ....+........        ..+.....++++
T Consensus        45 ~~~v~~~--~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~  114 (425)
T 1r5m_A           45 LDNIVSS--TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA--------SSGKTTNQVTCL  114 (425)
T ss_dssp             CSCCSEE--EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEE
T ss_pred             cCceEEE--EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc--------cccCCCCceEEE
Confidence            4678655  9999999 9999999999999999    8888      3444432100000        000123356677


Q ss_pred             EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (612)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~  151 (612)
                      .|.+.         +.+|++|+.+|.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       115 ~~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          115 AWSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             EECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             EEcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            77663         78999999999999999 666666566 57999999999999999999999999999999999999


Q ss_pred             eEEEecCCCC---------------eeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          152 LGKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       152 ~~~~~~~~~~---------------v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      +..+..+...               +.+++|+|++.+++.+. |.|++||+++++.+..+.+|..+|.+++|+|++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            9998877766               99999999876554444 9999999999999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~  295 (612)
                      +++ .|+.|++||+.+++..     ..+..+...+..+.|+     |++ ++++++.||.|++||+.+++.+........
T Consensus       264 ~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  331 (425)
T 1r5m_A          264 SAS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV  331 (425)
T ss_dssp             EEE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEc-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence            987 7999999999987643     3344455566777787     888 999999999999999999987766554333


Q ss_pred             EeecccccCCCCcccchhhhcccccceecCCCceEEE-----EeCC-------ccCceEEEeeccCC--CeEEEEecCCC
Q 007234          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYGL-------LLKPSFQKILVNSG--EDINLNCSQDG  361 (612)
Q Consensus       296 ~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~-----~~g~-------~~~~~~~~~~~h~~--~v~~l~~S~dg  361 (612)
                      .+.+.. ++|+++    .+++++.++.+++|+....-     ..+.       ........+..|..  .|.+++|+|||
T Consensus       332 ~i~~~~-~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          332 PIFAGR-ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             CEEEEE-ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             cEEEEE-EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence            333332 677877    88888888877766521000     0000       00125667788876  99999999999


Q ss_pred             ceEeccccceeeecceee
Q 007234          362 VLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       362 ~~l~~s~s~d~~~~~w~~  379 (612)
                      ++| ++++.|+.+++|++
T Consensus       407 ~~l-~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          407 NKI-SVAYSLQEGSVVAI  423 (425)
T ss_dssp             SEE-EEEESSSCCEEEEC
T ss_pred             ceE-EEEecCceEEEEee
Confidence            999 99999999999987

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-35  Score=324.83  Aligned_cols=317  Identities=21%  Similarity=0.263  Sum_probs=262.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|+++  +|+|||++|++++.||.|++||. +++.+..+.+|...+.++.|+++                       
T Consensus       220 ~~~~v~~~--~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d-----------------------  273 (577)
T 2ymu_A          220 HSSSVRGV--AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD-----------------------  273 (577)
T ss_dssp             CSSCEEEE--EECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCCEEEE--EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC-----------------------
Confidence            35677655  99999999999999999999996 57888888888877776666666                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..+++++.++.|++||.. ++....+ .+|...|.+++|+|+++.+++++.|++|++||.. ++.+..+..|...
T Consensus       274 ----~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~  346 (577)
T 2ymu_A          274 ----GQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSS  346 (577)
T ss_dssp             ----SSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCC
Confidence                8889999999999999965 4555444 6899999999999999999999999999999975 5566788889999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +.+++|+|+|+++++++  |.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||....      .
T Consensus       347 v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~------~  418 (577)
T 2ymu_A          347 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ------L  418 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC------E
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC------E
Confidence            99999999999999987  89999995 6778889999999999999999999999987 7999999996432      2


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~  319 (612)
                      ...+..+...+..+.|+     |++++|++++.|+.|++||.. ++.+.........+.+.. ++|+++    .+++++.
T Consensus       419 ~~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~-~spd~~----~las~~~  487 (577)
T 2ymu_A          419 LQTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASD  487 (577)
T ss_dssp             EEEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE-ECTTSC----EEEEEET
T ss_pred             EEEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE-EcCCCC----EEEEEeC
Confidence            33444555566777887     999999999999999999964 455544444333333333 788888    8899998


Q ss_pred             cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      |+.+++|+.         .....+.+.+|...|.+++|||||++| ++++.|+.+++|+..
T Consensus       488 d~~i~iw~~---------~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          488 DKTVKLWNR---------NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN  538 (577)
T ss_dssp             TSEEEEEET---------TSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred             CCEEEEEcC---------CCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence            877776551         234556788999999999999999999 999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=299.91  Aligned_cols=287  Identities=14%  Similarity=0.136  Sum_probs=216.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEe-ec-cCCccccccccccccccccccceeEEEeeecc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEF-AD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      +..+|+++  +|+|+  +||+|+.||+|++||+.++  .....+ .+ |...+.++.|+++                   
T Consensus        13 h~~~v~~~--~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-------------------   69 (330)
T 2hes_X           13 YKEKIWSF--DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-------------------   69 (330)
T ss_dssp             CSSCEEEE--EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-------------------
T ss_pred             CCCceeee--ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-------------------
Confidence            56788655  99998  9999999999999999875  344444 23 5555555555544                   


Q ss_pred             cccccccCCcEEEEEECCCcEEEEEcCC-------CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC--
Q 007234           78 RKKKRKLGSSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--  148 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~--  148 (612)
                              +.+|++|+.||.|++||+..       .+.+..+ .+|...|.+++|+|++++|++|+.|++|++||+..  
T Consensus        70 --------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           70 --------TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             --------SSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred             --------CCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence                    78999999999999999853       2344333 68999999999999999999999999999999943  


Q ss_pred             --CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC--eeEEEEecCCCCEEEEEEeeC--CcEEEEEEcC
Q 007234          149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG  220 (612)
Q Consensus       149 --~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~~  220 (612)
                        .+++..+.+|...|.+++|+|++++|++++  ++|++||..++  +++..+.+|...|.+++|+|+  +.+|++++ .
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~  219 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-D  219 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-T
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-C
Confidence              256778889999999999999999999998  89999999876  678899999999999999998  67888887 7


Q ss_pred             CCeEEEEEcCCCcccc---ceeeEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234          221 ERYIALWRTDGVKKQS---ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~  296 (612)
                      |++|++||+..+....   ..+...+.. +...+..+.|+     +++ +|++++.||.|++|+..+++..         
T Consensus       220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~-~l~s~~~dg~v~iw~~~~~~~~---------  284 (330)
T 2hes_X          220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FNG-LIASVGADGVLAVYEEVDGEWK---------  284 (330)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TTS-CEEEEETTSCEEEEEEETTEEE---------
T ss_pred             CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CCC-EEEEEeCCCEEEEEEcCCCceE---------
Confidence            9999999987642210   112223322 44556677776     554 7999999999999996543210         


Q ss_pred             eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCC-CeEEEEecC--CCceEeccccceee
Q 007234          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKS  373 (612)
Q Consensus       297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~l~~S~--dg~~l~~s~s~d~~  373 (612)
                      ..                                           ......|.. .|.+++|+|  ||.+| +|||.|++
T Consensus       285 ~~-------------------------------------------~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~  320 (330)
T 2hes_X          285 VF-------------------------------------------AKRALCHGVYEINVVKWLELNGKTIL-ATGGDDGI  320 (330)
T ss_dssp             EE-------------------------------------------EEESCTTTTSCEEEEEEC-----CCE-EEEETTSE
T ss_pred             EE-------------------------------------------eccccccccceEEEEEEecCCCceEE-EEecCCCc
Confidence            00                                           001234555 789999999  78999 99999999


Q ss_pred             ecceeee
Q 007234          374 KRGRYVQ  380 (612)
Q Consensus       374 ~~~w~~~  380 (612)
                      +++|++.
T Consensus       321 v~~W~~~  327 (330)
T 2hes_X          321 VNFWSLE  327 (330)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEec
Confidence            9999873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=295.05  Aligned_cols=240  Identities=21%  Similarity=0.286  Sum_probs=215.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|.  +++|+|++.++++++.|++|++||+.+++.+..+..+...+..+.|+++                       
T Consensus        79 h~~~v~--~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd-----------------------  133 (321)
T 3ow8_A           79 HQLGVV--SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD-----------------------  133 (321)
T ss_dssp             CSSCEE--EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT-----------------------
T ss_pred             CCCCEE--EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC-----------------------
Confidence            356674  4599999999999999999999999999999998877766666666665                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.++++|+.+|.|++|++.+++....+ ..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..+
T Consensus       134 ----g~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~  208 (321)
T 3ow8_A          134 ----SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP  208 (321)
T ss_dssp             ----SSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ----CCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc
Confidence                889999999999999999999988666 568889999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      |.+++|+|++++|++++  +.|++||+++++....+.+|...|.+++|+|++++|++++ .|++|++||+.+++.     
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~~-----  282 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRTC-----  282 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE-----
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCEE-----
Confidence            99999999999999998  8999999999999999999999999999999999999998 799999999998763     


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      +..+..+...+..+.|+     |++.+|++++.||.|++||..
T Consensus       283 ~~~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          283 VHTFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence            34555555666778887     999999999999999999963

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.1e-36  Score=314.79  Aligned_cols=321  Identities=13%  Similarity=0.130  Sum_probs=246.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++|+|+|++|++++.||.|++||+.+++....+..+                    ...++.+++++        +.+++
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~--------~~~l~  113 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--------------------DYTAVDTAKLQ--------MRRFI  113 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--------------------CEEEEEEECSS--------SCEEE
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--------------------CceEEEEEecC--------CCEEE
Confidence            399999999999999999999999877654333211                    23344444444        78899


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd  170 (612)
                      +|+.+|.|++||+.+++....+ .+|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+
T Consensus       114 ~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          114 LGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR  192 (420)
T ss_dssp             EEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred             EEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence            9999999999999998887544 689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeC--CeEEEEEcCCCeeEEEEec---CCCCEEEEE---------------------EeeCCcEEEEEEcCCCeE
Q 007234          171 GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       171 g~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~---------------------~sp~~~~l~s~s~~d~~i  224 (612)
                      +++|++++  |.|++||+++++.+..+..   |...|.++.                     |+|+++++++++ .|+.|
T Consensus       193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  271 (420)
T 3vl1_A          193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVI  271 (420)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCE
T ss_pred             CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeE
Confidence            99999988  8999999999999998875   444555555                     468899999987 79999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcce-ecccCC-ceeEeeccc
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTKA-TKILSSSED  301 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~  301 (612)
                      ++||+.+++..   . .....+...+..+.|+     |++. +|++++.||.|++||+.+++. +..... ....+.+. 
T Consensus       272 ~i~d~~~~~~~---~-~~~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-  341 (420)
T 3vl1_A          272 TVHNVFSKEQT---I-QLPSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-  341 (420)
T ss_dssp             EEEETTTCCEE---E-EECCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred             EEEECCCCcee---E-EcccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence            99999987643   1 1222345566777887     8888 999999999999999988754 332221 11111111 


Q ss_pred             ccCCCCcccchhhhcccccceecCCCceEEEEeCCcc-----CceEEEeeccCCCeEEEEecCCCc---eEeccccceee
Q 007234          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-----KPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKS  373 (612)
Q Consensus       302 ~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~-----~~~~~~~~~h~~~v~~l~~S~dg~---~l~~s~s~d~~  373 (612)
                       +.++++    .+++++.|+.+++|+..    .+...     ......+..|...|.+++|+|||.   .+ ++.+.++.
T Consensus       342 -~~~~~~----~l~s~~~d~~v~iw~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~  411 (420)
T 3vl1_A          342 -YFAAGA----LFVSSGFDTSIKLDIIS----DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNF  411 (420)
T ss_dssp             -EEETTE----EEEEETTTEEEEEEEEC----CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTE
T ss_pred             -EeCCCC----EEEEecCCccEEEEecc----CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEcCCce
Confidence             234454    78888888877776521    11111     122234567888999999999999   66 44555789


Q ss_pred             ecceeeec
Q 007234          374 KRGRYVQN  381 (612)
Q Consensus       374 ~~~w~~~~  381 (612)
                      +++|++.+
T Consensus       412 ~~~~~~~~  419 (420)
T 3vl1_A          412 CALYNLSN  419 (420)
T ss_dssp             EEEEESCC
T ss_pred             EEEEeccC
Confidence            99998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-34  Score=292.86  Aligned_cols=295  Identities=14%  Similarity=0.137  Sum_probs=234.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.++|+++  +|+|+|++|++|+.||.|+|||+.+++.+..+.+|...+.++.|+++                       
T Consensus        31 h~~~v~~~--~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   85 (369)
T 3zwl_B           31 HERPLTQV--KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-----------------------   85 (369)
T ss_dssp             CSSCEEEE--EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             eeceEEEE--EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-----------------------
Confidence            56788655  99999999999999999999999999999999888777666666655                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCc------
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------  150 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~------  150 (612)
                          +.++++++.||.|++||+.+++.+..+.  |...|.+++|+|+++++++++.+     +.|++||+..+.      
T Consensus        86 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           86 ----TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             ----SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence                7899999999999999999999987774  88999999999999999999998     999999987653      


Q ss_pred             -----eeEEEecCCC--CeeEEEECCCCCEEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          151 -----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       151 -----~~~~~~~~~~--~v~~l~~spdg~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                           ....+..+..  .+.+++|+|+++++++++  |.|++||+++ ++.+..+.+|...|.+++|+|++++|++++ .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  238 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-R  238 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-C
Confidence                 3444555555  899999999999999987  8999999999 788999999999999999999999999987 7


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecc
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (612)
                      |+.|++||+.+++..     ..+.+ ...+..+.++     |++.++++++.++...+|........             
T Consensus       239 d~~i~v~d~~~~~~~-----~~~~~-~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-------------  294 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVL-----KKYET-DCPLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-------------  294 (369)
T ss_dssp             TSEEEEEETTTCCEE-----EEEEC-SSCEEEEEEC-----SSSSEEEEEECCC--------------------------
T ss_pred             CceEEEEECCCCcee-----eeecC-CCCceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-------------
Confidence            999999999987643     33333 3345566776     99999999999985554433211100             


Q ss_pred             cccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       301 ~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                 ..+.+.+ .........+.+|...|.+++|+|||++| ++++.|+.+++|++.
T Consensus       295 ---------------------------~~i~~~d-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          295 ---------------------------FEARFYH-KIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFE  345 (369)
T ss_dssp             ---------------------------CEEEEEE-TTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEEC
T ss_pred             ---------------------------ceeEEEe-cCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECc
Confidence                                       0000000 01112223566788899999999999999 999999999999985


Q ss_pred             c
Q 007234          381 N  381 (612)
Q Consensus       381 ~  381 (612)
                      .
T Consensus       346 ~  346 (369)
T 3zwl_B          346 K  346 (369)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.9e-35  Score=295.85  Aligned_cols=320  Identities=11%  Similarity=0.062  Sum_probs=251.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.++|..+  +|||||++++++..++.+.+|+...........+|...+.++.|+++                       
T Consensus         8 ~~~~v~~~--~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   62 (337)
T 1gxr_A            8 GSKPAYSF--HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP-----------------------   62 (337)
T ss_dssp             EEEECCEE--EECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSS-----------------------
T ss_pred             cCCceeEE--EECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecC-----------------------
Confidence            34577555  99999999999888777777766555444444567766666666655                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEec----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEE
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKF  155 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~  155 (612)
                          +.++++++ +|.|++||+.++.....+.    .+|...|.+++|+|++++|++++.|+.|++||+.+++  ....+
T Consensus        63 ----~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  137 (337)
T 1gxr_A           63 ----TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL  137 (337)
T ss_dssp             ----SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred             ----CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence                78899988 9999999998875322221    2689999999999999999999999999999999887  56678


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..|...+.+++|+|+++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|++||+.+++
T Consensus       138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGR  216 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTE
T ss_pred             ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCc
Confidence            88889999999999999999987  8999999999999999999999999999999999999987 79999999999876


Q ss_pred             cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchh
Q 007234          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (612)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  313 (612)
                      ..     ....+.. .+..+.++     |++.++++++.||.|++||+.+++.... ......+.+. .++|+++    .
T Consensus       217 ~~-----~~~~~~~-~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~----~  279 (337)
T 1gxr_A          217 QL-----QQHDFTS-QIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSL-KFAYCGK----W  279 (337)
T ss_dssp             EE-----EEEECSS-CEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEE-EECTTSS----E
T ss_pred             eE-----eeecCCC-ceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEE-EECCCCC----E
Confidence            43     3333433 34567776     9999999999999999999988765432 2222222222 2677777    7


Q ss_pred             hhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +++++.++.++.|+.       ......  ....|...+.+++|+|||++| ++++.|+.+++|++
T Consensus       280 l~~~~~dg~i~~~~~-------~~~~~~--~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRT-------PYGASI--FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSEEEEEET-------TTCCEE--EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred             EEEecCCCcEEEEEC-------CCCeEE--EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence            888888776665541       111111  234578889999999999999 99999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-34  Score=304.23  Aligned_cols=239  Identities=19%  Similarity=0.275  Sum_probs=215.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|+++  +|+|+|++||+|+.||+|+|||+.+++++..+.+|...+.++.|+++                       
T Consensus       149 h~~~V~~v--~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~-----------------------  203 (410)
T 1vyh_C          149 HTDSVQDI--SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-----------------------  203 (410)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred             cCCcEEEE--EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC-----------------------
Confidence            45678555  99999999999999999999999999999999888877776666665                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.++++|+.||.|++||+.++.++..+ .+|...|.++.|+|++.+|++|+.|++|++||+.++++...+..|...
T Consensus       204 ----~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~  278 (410)
T 1vyh_C          204 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  278 (410)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence                789999999999999999999998776 579999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCC--------------------CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          162 ISCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       162 v~~l~~spd--------------------g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      |.+++|+|+                    |.++++|+  +.|++||+++++++..+.+|...|.+++|+|+|++|++++ 
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-  357 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-  357 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-
Confidence            999999996                    67899888  8999999999999999999999999999999999999998 


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .|+.|++||+.+++..     ..+..+...+..+.|+     |++.+|++|+.||.|++|++
T Consensus       358 ~D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          358 DDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             TTTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred             CCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence            7999999999887643     4455556667788887     99999999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-36  Score=313.32  Aligned_cols=328  Identities=11%  Similarity=0.121  Sum_probs=250.4

Q ss_pred             ccceeEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCcE---EEEeeccCCccccccccccccccccccceeE
Q 007234            5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQV---QTEFADIASTETTSLYGNRLEREHLSVDYTC   70 (612)
Q Consensus         5 ~V~~l~~~fspdg~-~las~----------s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~   70 (612)
                      +|.++  +|||+|+ +||+|          +.||.|+|||+.++..   +..+ .|..                  .+.+
T Consensus        14 ~v~~~--~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~------------------~v~~   72 (416)
T 2pm9_A           14 RTATF--AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDS------------------KFND   72 (416)
T ss_dssp             ESCBC--CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSS------------------CEEE
T ss_pred             hcceE--eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCC------------------ceEE
Confidence            56545  9999997 99999          8899999999998763   2222 1233                  4556


Q ss_pred             EEeeecccccccccCCcEEEEEECCCcEEEEEcCC----CeEEEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEE
Q 007234           71 MKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEID  145 (612)
Q Consensus        71 ~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~----~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd  145 (612)
                      +.|.+.         +.+|++|+.+|.|++||+.+    ......+ .+|...|++++|+|+ +++|++++.|+.|++||
T Consensus        73 ~~~s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           73 LDWSHN---------NKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             EEECSS---------SSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             EEECCC---------CCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            666443         77899999999999999988    3355444 679999999999998 89999999999999999


Q ss_pred             CCCCc------eeEE---EecCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecC------CCCEEEEEE
Q 007234          146 PLTGS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTF  207 (612)
Q Consensus       146 ~~~~~------~~~~---~~~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~  207 (612)
                      +.+++      ....   +..|...|.+++|+|+ +.++++++  |.|++||+++++.+..+..|      ...|.+++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW  222 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence            99886      3333   3568889999999999 78899887  89999999999999998876      789999999


Q ss_pred             eeCC-cEEEEEEcCCC---eEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEEC
Q 007234          208 SDNG-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       208 sp~~-~~l~s~s~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~  281 (612)
                      +|++ .++++++ .|+   .|++||++++...    ...+. .+...+..+.|+     | ++.+|++++.||.|++||+
T Consensus       223 ~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          223 HPKNSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CSSCTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECS
T ss_pred             CCCCCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeC
Confidence            9997 5777776 688   9999999986422    22333 344556677787     7 8999999999999999999


Q ss_pred             CCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCc------------------------
Q 007234          282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------------------------  337 (612)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------------------------  337 (612)
                      .+++.+.........+.+.. ++|++..   .+++++.|+.+++|+..-.......                        
T Consensus       293 ~~~~~~~~~~~~~~~v~~~~-~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFKTK-FAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK  368 (416)
T ss_dssp             SSCCEEEEEECSSSCCCCEE-ECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred             CCCccceeecCCCCceEEEE-ECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence            99988776655444343333 7787732   8899999888777652211000000                        


Q ss_pred             ----cCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          338 ----LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       338 ----~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                          ...+ .....|...+.+++|||||++| ++++.|+++++|++
T Consensus       369 ~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~  412 (416)
T 2pm9_A          369 EKPSVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNP  412 (416)
T ss_dssp             SCCCSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCC
T ss_pred             cccccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEe
Confidence                0001 1112266678899999999999 99999999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-33  Score=286.67  Aligned_cols=289  Identities=17%  Similarity=0.222  Sum_probs=233.1

Q ss_pred             CCcccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCc-----EEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspd-g~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |+++|+++  +|+|+ +++||+||.||+|+|||+.+++     ....+.+|...+.++.|+++                 
T Consensus        37 H~~~V~~v--~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-----------------   97 (340)
T 4aow_A           37 HNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-----------------   97 (340)
T ss_dssp             CSSCEEEE--EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-----------------
T ss_pred             ccCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-----------------
Confidence            57889666  99998 6899999999999999987654     45667777777666666665                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE-E
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-K  154 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~-~  154 (612)
                                +.++++|+.||.|++|+...+...... ..+...+..+.++++++.|++++.|+.+++||+....... .
T Consensus        98 ----------g~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~  166 (340)
T 4aow_A           98 ----------GQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ  166 (340)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ----------CCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence                      889999999999999999998887665 4578889999999999999999999999999987665433 3


Q ss_pred             EecCCCCeeEEEECCCC--CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          155 FRASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      ...|...+.+++|++++  .++++++  +.|++||+++++.+..+.+|.++|++++|+|++++|++++ .|+.|++||+.
T Consensus       167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~  245 (340)
T 4aow_A          167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLN  245 (340)
T ss_dssp             SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETT
T ss_pred             eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEec
Confidence            55678899999999865  4666666  8999999999999999999999999999999999999998 79999999999


Q ss_pred             CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCccc
Q 007234          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (612)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  310 (612)
                      +.+..     ..+.++. .+..++++     |++. +++++.|+.|++||++++..+........               
T Consensus       246 ~~~~~-----~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------  298 (340)
T 4aow_A          246 EGKHL-----YTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------  298 (340)
T ss_dssp             TTEEE-----EEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-----------------
T ss_pred             cCcee-----eeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------
Confidence            87643     3444444 45667776     7765 55667799999999987765442221100               


Q ss_pred             chhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       311 ~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                     ......|...|.+++|+|||++| ++|+.|+.+++|++.
T Consensus       299 -------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          299 -------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ------------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred             -------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCC
Confidence                                           01234677789999999999999 999999999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.4e-34  Score=284.82  Aligned_cols=252  Identities=13%  Similarity=0.082  Sum_probs=214.3

Q ss_pred             cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCC
Q 007234           38 QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP  117 (612)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~  117 (612)
                      +...+|.+|.+.|.++.|+++                           +.++++|+.||.|++||+.++..+..+ ..|.
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~---------------------------~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~   55 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPT---------------------------EPWVLTTLYSGRVELWNYETQVEVRSI-QVTE   55 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSS---------------------------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCS
T ss_pred             eeEEeecCCCCceEEEEECCC---------------------------CCEEEEEcCCCcEEEEECCCCceeEEe-eccC
Confidence            345678888888887777777                           889999999999999999999988776 5799


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC-eeEEE
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQK  194 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~-~~~~~  194 (612)
                      .+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+  ++|++||++++ .....
T Consensus        56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  135 (304)
T 2ynn_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (304)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence            9999999999999999999999999999999999999999999999999999999999998  89999999887 55678


Q ss_pred             EecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234          195 FSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (612)
Q Consensus       195 ~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d  273 (612)
                      +.+|...|.+++|+| ++..|++++ .|++|++||+......   .... .++...+..+.+.+   .+++.+|++++.|
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~---~~~~~~l~s~s~D  207 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTLT-TGQERGVNYVDYYP---LPDKPYMITASDD  207 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEEE-CCCTTCEEEEEECC---STTCCEEEEEETT
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---ceec-cCCcCcEEEEEEEE---cCCCCEEEEEcCC
Confidence            899999999999999 678899887 7999999999876543   2222 23333445555542   1578899999999


Q ss_pred             CcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeE
Q 007234          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (612)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (612)
                      |.|++||+++++.+.                                                       ++.+|...|.
T Consensus       208 ~~i~iWd~~~~~~~~-------------------------------------------------------~~~~h~~~v~  232 (304)
T 2ynn_A          208 LTIKIWDYQTKSCVA-------------------------------------------------------TLEGHMSNVS  232 (304)
T ss_dssp             SEEEEEETTTTEEEE-------------------------------------------------------EEECCSSCEE
T ss_pred             CeEEEEeCCCCccce-------------------------------------------------------eeCCCCCCEE
Confidence            999999987654321                                                       4557888899


Q ss_pred             EEEecCCCceEeccccceeeecceeeec
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      +++|+|++.+| +||+.|+++++|+...
T Consensus       233 ~~~~~p~~~~l-~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          233 FAVFHPTLPII-ISGSEDGTLKIWNSST  259 (304)
T ss_dssp             EEEECSSSSEE-EEEETTSCEEEEETTT
T ss_pred             EEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence            99999999999 9999999999999743

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.6e-34  Score=319.41  Aligned_cols=299  Identities=19%  Similarity=0.206  Sum_probs=234.0

Q ss_pred             CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCC-----cEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKG-----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |...|+++  +|+|++ ++|++|+.||+|+|||+.++     .....+.+|...+.++.|+++                 
T Consensus       381 H~~~V~~v--~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----------------  441 (694)
T 3dm0_A          381 HTDMVTAI--ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-----------------  441 (694)
T ss_dssp             CSSCEEEE--ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred             CCceeEEE--EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-----------------
Confidence            67788655  999975 79999999999999998763     456677888877777777666                 


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                                +.++++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||..........
T Consensus       442 ----------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          442 ----------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ----------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence                      889999999999999999999988776 579999999999999999999999999999998654333322


Q ss_pred             ---ecCCCCeeEEEECCCC--CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          156 ---RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       156 ---~~~~~~v~~l~~spdg--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                         .+|...|.+++|+|++  ..+++++  +.|++||+++++....+.+|.+.|.+++|+|++++|++++ .|+.|++||
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd  589 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWD  589 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEE
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Confidence               3577789999999987  5788877  8999999999999999999999999999999999999998 799999999


Q ss_pred             cCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~  308 (612)
                      +.+++..     ..+.++ ..+..++|+     |++.++++++ ++.|++||+.+++.+............        .
T Consensus       590 ~~~~~~~-----~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~  649 (694)
T 3dm0_A          590 LAEGKKL-----YSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE--------K  649 (694)
T ss_dssp             TTTTEEE-----ECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred             CCCCceE-----EEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc--------c
Confidence            9988643     344443 346677887     8888877765 566999999998776543321100000        0


Q ss_pred             ccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                              ....+                    ......+...+.+++|||||++| +||+.|+++++|++.
T Consensus       650 --------~~~~~--------------------~~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          650 --------ADNSG--------------------PAATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ---------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred             --------ccccc--------------------cccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence                    00000                    00011222357899999999999 999999999999873

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.1e-34  Score=291.20  Aligned_cols=239  Identities=9%  Similarity=0.059  Sum_probs=196.2

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe----eccCCccccccccccccccccccceeEEEeeecccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      ++|.++  +|+||+ .|++|+.||+|+|||+.+++.+..+    .+|...|.++.|+++                     
T Consensus        83 ~~v~~~--~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd---------------------  138 (344)
T 4gqb_B           83 AGVADL--TWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS---------------------  138 (344)
T ss_dssp             SCEEEE--EEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---------------------
T ss_pred             CCEEEE--EEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---------------------
Confidence            457555  999986 6789999999999999998765443    356666666666555                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEec-
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA-  157 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~-  157 (612)
                            +++|++|+.||.|++||+.+++++..+ .+|...|++++|+|++. .|++|+.|++|++||+++++....+.. 
T Consensus       139 ------g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          139 ------GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence                  889999999999999999999998777 68999999999999885 689999999999999999998887653 


Q ss_pred             -CCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCCC
Q 007234          158 -STKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       158 -~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~  232 (612)
                       +...+.+++|+|+ ++++++|+  |.|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~  290 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLS  290 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCC
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC
Confidence             4457899999995 56788876  8999999999999999999999999999999984 677776 7999999999887


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcc
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~  285 (612)
                      +..      ....+...+..++|+     |++. +|++++.||+|++|++.+..
T Consensus       291 ~~~------~~~~H~~~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          291 ELF------RSQAHRDFVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEE------EECCCSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC--
T ss_pred             cEE------EEcCCCCCEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCCC
Confidence            532      334455566778887     8775 67789999999999987643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.3e-34  Score=293.28  Aligned_cols=317  Identities=10%  Similarity=-0.005  Sum_probs=239.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +.++|.++  +|+|||++||+|+.||.|++||+.+++  .+..+.+|...+.++.|+++                     
T Consensus         7 ~~~~i~~~--~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------------------   63 (372)
T 1k8k_C            7 LVEPISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---------------------   63 (372)
T ss_dssp             CSSCCCEE--EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---------------------
T ss_pred             cCCCeEEE--EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---------------------
Confidence            56788666  999999999999999999999999987  78888877766665555555                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce---eEEE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKF  155 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~  155 (612)
                            +.++++++.||.|++||+.+++..... ...|...|.+++|+|++++|++++.|+.|++||+..++.   ...+
T Consensus        64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence                  889999999999999999998754333 356899999999999999999999999999999988763   3333


Q ss_pred             -ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEc------------------CCCeeEEEEecCCCCEEEEEEeeCCcEE
Q 007234          156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       156 -~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~l  214 (612)
                       ..|...|.+++|+|+++++++++  |.|++||+                  .+++.+..+.+|...|.+++|+|++++|
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  217 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  217 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence             55778999999999999999987  89999995                  4678889999999999999999999999


Q ss_pred             EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC--cc--eeccc
Q 007234          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT  290 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~--~~--~~~~~  290 (612)
                      ++++ .|+.|++||+.+++..     ..+..+...+..+.|+     |++.+++++ .||.|++|++.+  ++  .+...
T Consensus       218 ~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          218 AWVS-HDSTVCLADADKKMAV-----ATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EEEE-TTTEEEEEEGGGTTEE-----EEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred             EEEe-CCCEEEEEECCCCcee-----EEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence            9988 7999999999987643     4444555566777887     899888877 999999999887  43  22211


Q ss_pred             CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCcc-Cce-EEEe-eccCCCeEEEEec-CCC---ce
Q 007234          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-KPS-FQKI-LVNSGEDINLNCS-QDG---VL  363 (612)
Q Consensus       291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~-~~~-~~~~-~~h~~~v~~l~~S-~dg---~~  363 (612)
                      ........        ..           ...+..+...  ...+... .+. ...+ .+|...|.+++|. ++|   .+
T Consensus       286 ~~~~~~~~--------~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~  344 (372)
T 1k8k_C          286 DVPKQSSQ--------RG-----------LTARERFQNL--DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ  344 (372)
T ss_dssp             CCC---------------------------CHHHHHHHC--CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSE
T ss_pred             Cccccchh--------hh-----------cchhhhhhhc--ccccccccCccccccccccccCCcceeEEecCCCcceee
Confidence            11100000        00           0000000000  0000000 000 0122 3799999999855 787   99


Q ss_pred             Eeccccceeeecceeeec
Q 007234          364 LPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       364 l~~s~s~d~~~~~w~~~~  381 (612)
                      | +||+.|+.+++|++.+
T Consensus       345 l-~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          345 F-CTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             E-EEEETTSEEEEEEHHH
T ss_pred             E-EEecCCCceEEEEecC
Confidence            9 9999999999999843

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.3e-34  Score=338.71  Aligned_cols=325  Identities=14%  Similarity=0.180  Sum_probs=265.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +...|.+  ++|||||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++                       
T Consensus       614 h~~~v~~--~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  668 (1249)
T 3sfz_A          614 HTDAVYH--ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-----------------------  668 (1249)
T ss_dssp             CSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             ccccEEE--EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC-----------------------
Confidence            4567754  499999999999999999999999999999999988888877777776                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                          +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|  ++..+++|+.|+.|++||+.+++++..+.+|.
T Consensus       669 ----~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          669 ----DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence                889999999999999999999998777 57999999999999  55689999999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE------------------------------------------
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------------------------------------------  195 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~------------------------------------------  195 (612)
                      ..|.+++|+|+++++++++  |.|++||+.+++....+                                          
T Consensus       744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~  823 (1249)
T 3sfz_A          744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL  823 (1249)
T ss_dssp             SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence            9999999999999999988  89999999877554332                                          


Q ss_pred             -------------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC
Q 007234          196 -------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (612)
Q Consensus       196 -------------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (612)
                                   .+|...|.+++|+|+++++++++ .|+.|++|++.++..     ...+..+...+..+.|+     |
T Consensus       824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----p  892 (1249)
T 3sfz_A          824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----P  892 (1249)
T ss_dssp             EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----T
T ss_pred             EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----C
Confidence                         16788899999999999999987 799999999998753     34555666677788887     9


Q ss_pred             CCcEEEEEecCCcEEEEECCCcceecccCCc-------------------------------------eeEeecccccCC
Q 007234          263 AGLYVLAISETGVCYIWYGQNIEELRNTKAT-------------------------------------KILSSSEDVNSK  305 (612)
Q Consensus       263 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~s~  305 (612)
                      +|.++++++.||.|++|++.+..........                                     ...+.+ ..++|
T Consensus       893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp  971 (1249)
T 3sfz_A          893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSP  971 (1249)
T ss_dssp             TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECT
T ss_pred             CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcC
Confidence            9999999999999999997543221110000                                     000111 12566


Q ss_pred             CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      +++    .+++|+.++.++.|+        .........+.+|...|.+++|+|||+++ ++++.|+.+++|++..
T Consensus       972 ~g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          972 HLE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             TSS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTT
T ss_pred             CCC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCC
Confidence            666    677777766555443        22234455777899999999999999999 9999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-33  Score=321.45  Aligned_cols=265  Identities=13%  Similarity=0.212  Sum_probs=224.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +++.|+++  +|||||++||+|+.||.|+|||+.+++.+..+.+|...+.++.|+++                       
T Consensus        12 h~~~v~~i--~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------   66 (814)
T 3mkq_A           12 RSDRVKGI--DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR-----------------------   66 (814)
T ss_dssp             ECSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-----------------------
T ss_pred             CCCceEEE--EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCC-----------------------
Confidence            45678555  99999999999999999999999999999999888777666666655                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~  160 (612)
                          +.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||+|++||+.++ .....+..|..
T Consensus        67 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  141 (814)
T 3mkq_A           67 ----KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (814)
T ss_dssp             ----GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence                788999999999999999999988777 579999999999999999999999999999999887 67778888999


Q ss_pred             CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-CCEEEEEEee--CCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp--~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      .|.+++|+| ++..+++++  |.|++||+.+++....+..+. ..+.+++|+|  ++.++++++ .|+.|++||+.+++.
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC  220 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE
Confidence            999999999 888999887  899999999888877776655 8899999999  999999987 799999999988763


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCc
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~  308 (612)
                           ...+..+...+..+.|+     |++.++++++.||.|++||..+++.+.........+.+.. ++|++.
T Consensus       221 -----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~  283 (814)
T 3mkq_A          221 -----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA-THPTGR  283 (814)
T ss_dssp             -----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE-ECTTCG
T ss_pred             -----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE-EccCCC
Confidence                 34445555666778887     9999999999999999999999887766554433333222 455554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.9e-34  Score=293.06  Aligned_cols=292  Identities=10%  Similarity=0.027  Sum_probs=213.0

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCcEE----------EEeeccCCccccccccccccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQVQ----------TEFADIASTETTSLYGNRLEREHLSVD   67 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg-------~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~   67 (612)
                      ||.++  +|+|||++||+||.|.       .|++|++..+...          ..+.++...+.++.+..+         
T Consensus        16 PV~sv--~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---------   84 (365)
T 4h5i_A           16 PAYGA--KFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---------   84 (365)
T ss_dssp             CEEEE--EEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---------
T ss_pred             CEEEE--EEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---------
Confidence            78544  9999999999998643       5999998765321          122333333332222211         


Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe--------ccCCCCCeEEEEEecCCCEEEEEe--c
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFATHGSCIYSAG--A  137 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~--------~~~h~~~V~~l~~sp~~~~l~s~s--~  137 (612)
                        .+.+...+       ++..|+.|+.++.+++|++.........        ...+...+.+++|+|||+++++|+  .
T Consensus        85 --~~~~g~~~-------~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~  155 (365)
T 4h5i_A           85 --IILVGCNE-------NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV  155 (365)
T ss_dssp             --EEEEECCC-------CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred             --EEEEEECC-------CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence              00000000       0122333455778999998765322111        123445689999999999987554  7


Q ss_pred             CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEE
Q 007234          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l  214 (612)
                      |++|++||+.+++++..+. |...|.+++|+|||+++++++ +.+.+|+..+++.+..  ..+|...|.+++|+|+++++
T Consensus       156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l  234 (365)
T 4h5i_A          156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL  234 (365)
T ss_dssp             SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred             CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence            8999999999999999887 677899999999999999998 8888998888876543  35788899999999999999


Q ss_pred             EEEEcCCC----eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          215 LSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       215 ~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      ++++ .|+    .+++|++...... ......+..+...+.+++|+     |+|++|++|+.||.|+|||+++++.+.. 
T Consensus       235 ~~~s-~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~iwd~~~~~~~~~-  306 (365)
T 4h5i_A          235 IAAS-LKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIALVKLKDLSMSKI-  306 (365)
T ss_dssp             EEEE-ESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred             EEEe-cCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEEEECCCCcEEEE-
Confidence            9987 465    6888998776533 11223444555667788887     9999999999999999999987765421 


Q ss_pred             CCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccc
Q 007234          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL  370 (612)
Q Consensus       291 ~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~  370 (612)
                                                                           -+.+|...|++++|||||++| +|||.
T Consensus       307 -----------------------------------------------------~~~gH~~~V~~v~fSpdg~~l-aS~S~  332 (365)
T 4h5i_A          307 -----------------------------------------------------FKQAHSFAITEVTISPDSTYV-ASVSA  332 (365)
T ss_dssp             -----------------------------------------------------ETTSSSSCEEEEEECTTSCEE-EEEET
T ss_pred             -----------------------------------------------------ecCcccCCEEEEEECCCCCEE-EEEeC
Confidence                                                                 123688899999999999999 99999


Q ss_pred             eeeecceee
Q 007234          371 LKSKRGRYV  379 (612)
Q Consensus       371 d~~~~~w~~  379 (612)
                      |+++|+|++
T Consensus       333 D~tvrvw~i  341 (365)
T 4h5i_A          333 ANTIHIIKL  341 (365)
T ss_dssp             TSEEEEEEC
T ss_pred             CCeEEEEEc
Confidence            999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=287.33  Aligned_cols=310  Identities=13%  Similarity=0.107  Sum_probs=233.0

Q ss_pred             CCcccceeEEEEcCCCCEE-EEEeC---CCcEEEEECCCCcEEEEee-ccCCccccccccccccccccccceeEEEeeec
Q 007234            2 GSSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~l-as~s~---dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      +..+|.++  +|+|++..+ ++|+.   ||.|+|||+.+++...... +|...+                  .++.|.+.
T Consensus        17 h~~~v~~~--~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~   76 (357)
T 3i2n_A           17 FNYTVFDC--KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI------------------KCGTFGAT   76 (357)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE------------------EEEECTTC
T ss_pred             CCCceEEE--EEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcE------------------EEEEEcCC
Confidence            45678555  999999655 55655   8999999999988765432 344444                  45555443


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCe-EEEEeccCCCCCeEEEEE------ecCCCEEEEEecCCcEEEEECCCC
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~------sp~~~~l~s~s~dg~v~iwd~~~~  149 (612)
                      .+.      +.++++|+.+|.|++||+.+++ .+..+ .+|...|.++.|      +|+++.|++++.||.|++||+.++
T Consensus        77 ~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           77 SLQ------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             CTT------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred             CCC------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence            211      5789999999999999999988 55555 689999999955      688999999999999999999988


Q ss_pred             c-eeEEEecCCC----CeeEEE----ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee---CCcEEE
Q 007234          150 S-LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVL  215 (612)
Q Consensus       150 ~-~~~~~~~~~~----~v~~l~----~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~  215 (612)
                      + .+..+..+..    .+.+++    |+|+++++++++  |.|++||+++++.... ..|...|.+++|+|   ++.+++
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEE
T ss_pred             CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEE
Confidence            7 7777766554    789998    789999999987  8999999999987544 67899999999999   899999


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCcceecccCCce
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATK  294 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~~~~~~~~~~~  294 (612)
                      +++ .|+.|++||+.+++............+...+..+.|+     |++. ++++++.||.|++||+.++.......   
T Consensus       229 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  299 (357)
T 3i2n_A          229 ATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD---  299 (357)
T ss_dssp             EEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC---
T ss_pred             EEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc---
Confidence            987 7999999999887654211122233455566777787     8888 89999999999999987665432111   


Q ss_pred             eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeee
Q 007234          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (612)
Q Consensus       295 ~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~  374 (612)
                                +++..   .-           ..+         .......+..|...|.+++|+|+|++|+++++.|+.+
T Consensus       300 ----------~~g~~---~~-----------~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          300 ----------SEGIE---MG-----------VAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             ----------TTSCC---CC-----------CCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             ----------CCCCc---cc-----------ccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence                      11110   00           000         1123446778999999999999999993389999999


Q ss_pred             cceeeec
Q 007234          375 RGRYVQN  381 (612)
Q Consensus       375 ~~w~~~~  381 (612)
                      ++|++.+
T Consensus       347 ~iw~~~~  353 (357)
T 3i2n_A          347 RVLIVTK  353 (357)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999843

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.5e-33  Score=281.78  Aligned_cols=236  Identities=19%  Similarity=0.293  Sum_probs=201.9

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ...|  .+++|+|+|++||+|+.|+.|++||+.++.    ....+.+|.+.+.                  ++.|.+   
T Consensus        97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~---  153 (340)
T 1got_B           97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS------------------CCRFLD---  153 (340)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE------------------EEEEEE---
T ss_pred             CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE------------------EEEECC---
Confidence            4556  455999999999999999999999998763    4555655554443                  444433   


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                             +..+++++.||.|++||+.+++.+..+ .+|...|.+++|+|+++++++|+.|++|++||+++++++..+.+|
T Consensus       154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence                   345899999999999999999988766 679999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ...|.+++|+|+++++++++  |.|++||+++++.+..+..  +...|.+++|+|+|+++++++ .|+.|++||+.+++.
T Consensus       226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~  304 (340)
T 1got_B          226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR  304 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence            99999999999999999998  8999999999988877753  335799999999999999987 799999999988763


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      .     ..+..+...+.++.|+     |+|.+|++++.||.|++||
T Consensus       305 ~-----~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          305 A-----GVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             E-----EEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred             e-----eEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence            3     4455566677788887     9999999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9e-33  Score=292.78  Aligned_cols=304  Identities=13%  Similarity=0.153  Sum_probs=247.0

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      +++++|++|++|+.||+|++||+.+++.+..+.+|.+.+.++.|+                             +.++++
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-----------------------------~~~l~s  174 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------------------------DNIIIS  174 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-----------------------------TTEEEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-----------------------------CCEEEE
Confidence            577789999999999999999999999999998777655543332                             458999


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg  171 (612)
                      |+.||.|++||+.+++.+..+ .+|...|.++.|+  ++.+++|+.||+|++||+.+++.+..+.+|...+.++++  ++
T Consensus       175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence            999999999999999998777 5799999999996  568999999999999999999999999999999999999  67


Q ss_pred             CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCcee
Q 007234          172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (612)
Q Consensus       172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (612)
                      +++++++  |.|++||+++++.+..+.+|...|.++.|  ++.++++++ .|+.|++||+.+++..     ..+..+...
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~  321 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCI-----HTLTGHQSL  321 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEE-----EEECCCCSC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEE-----EEEcCCccc
Confidence            8888887  89999999999999999999999999999  788999987 7999999999988643     344444444


Q ss_pred             EEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC---ceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (612)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~  326 (612)
                      +..+.+       ++.++++++.||.|++||+.+++.+.....   ....+.+.. +  +++    .+++++.|+.+++|
T Consensus       322 v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          322 TSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW  387 (445)
T ss_dssp             EEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred             EEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence            444443       467999999999999999999887765543   222222222 2  233    78888888777766


Q ss_pred             CceEEEEeCCccCceEEEe-----eccCCCeEEEEecCCCceEeccccceee----ecceeee
Q 007234          327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ  380 (612)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~l~~S~dg~~l~~s~s~d~~----~~~w~~~  380 (612)
                      +.        ........+     ..|...|++++|+|+|.++ ++|+.|++    +.+|++.
T Consensus       388 d~--------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          388 DL--------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             ET--------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             EC--------CCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence            51        112223333     3577789999999999999 99999998    8888874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-34  Score=298.67  Aligned_cols=241  Identities=8%  Similarity=0.078  Sum_probs=192.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      .++|+++  +|+|||++||+|+.||.|+|||+.++  +.+..+.+|...+.++.|+++                      
T Consensus        11 ~~~v~~~--~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------------------   66 (377)
T 3dwl_C           11 PKPSYEH--AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----------------------   66 (377)
T ss_dssp             SSCCSCC--EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----------------------
T ss_pred             CCcEEEE--EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----------------------
Confidence            5688766  99999999999999999999999988  677778777776666666655                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc---eeEE
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK  154 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~---~~~~  154 (612)
                           +++|++|+.||.|++||+.++.   ....+ .+|...|++++|+|++++|++++.|+.|++||+++++   ....
T Consensus        67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence                 7889999999999999999887   44344 5799999999999999999999999999999999887   4777


Q ss_pred             Eec-CCCCeeEEEECCCCCEEEEeC--CeEEEEEcC------------------CCeeEEEEecCCCCEEEEEEeeCCcE
Q 007234          155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       155 ~~~-~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~  213 (612)
                      +.. |...|.+++|+|++++|++++  |.|++||+.                  .++++..+ +|...|.+++|+|++++
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            887 889999999999999999988  899999985                  35566677 89999999999999999


Q ss_pred             EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      |++++ .|+.|++||+.+++.. ...+..+..+...+..+.|+     |++++|++++.++.+ +|+..
T Consensus       220 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          220 LAYAG-HDSSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEEE-TTTEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred             EEEEe-CCCcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence            99987 7999999999988752 11133445555666778887     999999988776666 66654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.1e-33  Score=288.40  Aligned_cols=280  Identities=12%  Similarity=0.108  Sum_probs=219.8

Q ss_pred             CCcccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEee--ccCCccccccccccccccccccceeEEEeeeccc
Q 007234            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg-~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      +..+|+++  +|+|+| ++||+|+.||.|+|||+.+++....+.  +|...                  +.++.|.+.+ 
T Consensus        72 h~~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~~-  130 (383)
T 3ei3_B           72 FDRRVTSL--EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA------------------ITGMKFNQFN-  130 (383)
T ss_dssp             CSSCEEEE--EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCB------------------EEEEEEETTE-
T ss_pred             CCCCEEEE--EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCc------------------eeEEEeCCCC-
Confidence            35678555  999999 999999999999999999988877665  34444                  4455555532 


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                             +.++++++.||.|++||+.+... ..+.  .+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.
T Consensus       131 -------~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  201 (383)
T 3ei3_B          131 -------TNQLFVSSIRGATTLRDFSGSVI-QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK  201 (383)
T ss_dssp             -------EEEEEEEETTTEEEEEETTSCEE-EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             -------CCEEEEEeCCCEEEEEECCCCce-EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec
Confidence                   67899999999999999996443 3332  234588999999999999999999999999998 688889999


Q ss_pred             cCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCC----CeeEEEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEEEE
Q 007234          157 ASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~----~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd  228 (612)
                      .|...|.+++|+|+++ ++++++  +.|++||+++    +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd  279 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYS  279 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEE
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEE
Confidence            9999999999999999 888887  8999999998    6666666 6999999999999 999999987 799999999


Q ss_pred             cCCCccccceeeEee------c---------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          229 TDGVKKQSASCVLAM------E---------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                      +.+++...   .+..      .         ++......+.++     |++++  +++.||.|++||+.+++.+..    
T Consensus       280 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~----  345 (383)
T 3ei3_B          280 SYDWSKPD---QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQ----  345 (383)
T ss_dssp             TTBTTSCS---EEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEE----
T ss_pred             CCCCcccc---ccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeee----
Confidence            98876541   1110      0         111112224444     66666  777899999999887765431    


Q ss_pred             eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec--cCCCeEEEEecCCCceEeccccce
Q 007234          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLL  371 (612)
Q Consensus       294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~l~~S~dg~~l~~s~s~d  371 (612)
                                                                         +.+  |...+..++|+|||++| ++|+ |
T Consensus       346 ---------------------------------------------------l~~~~~~~~~~~~~~s~~g~~l-~s~s-d  372 (383)
T 3ei3_B          346 ---------------------------------------------------LRDPNAAGIISLNKFSPTGDVL-ASGM-G  372 (383)
T ss_dssp             ---------------------------------------------------ECBTTBCSCCCEEEECTTSSEE-EEEE-T
T ss_pred             ---------------------------------------------------ecCCCCCceEEEEEEecCccEE-EEec-C
Confidence                                                               111  23356667999999999 8987 8


Q ss_pred             eeecceeee
Q 007234          372 KSKRGRYVQ  380 (612)
Q Consensus       372 ~~~~~w~~~  380 (612)
                      +.+++|++.
T Consensus       373 ~~i~iw~~~  381 (383)
T 3ei3_B          373 FNILIWNRE  381 (383)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEEecC
Confidence            999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.4e-33  Score=287.89  Aligned_cols=297  Identities=11%  Similarity=0.127  Sum_probs=234.0

Q ss_pred             CCcccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234            2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus         2 ~s~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      +.++|.++  +|+|+    ...+++++.++.|++||+.+++.+..+..+...             .....+.++.|.+..
T Consensus        17 h~~~v~~i--~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           17 HNQPLFGV--QFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA-------------DADENFYTCAWTYDS   81 (366)
T ss_dssp             TCSCEEEE--EECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS-------------CTTCCEEEEEEEECT
T ss_pred             CCCceEEE--EEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc-------------CCCCcEEEEEeccCC
Confidence            46788555  99994    445666666779999999999887777643321             113456778887763


Q ss_pred             cccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-
Q 007234           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-  155 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-  155 (612)
                      ..     ++.++++|+.+|.|++||+.+++.+..+ .+|...|++++|+| ++++|++|+.||.|++||+.+++.+..+ 
T Consensus        82 ~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           82 NT-----SHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             TT-----CCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CC-----CCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence            21     1468999999999999999999988776 57999999999999 8999999999999999999999999988 


Q ss_pred             --ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe----------------------------cCCCCEE
Q 007234          156 --RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVR  203 (612)
Q Consensus       156 --~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~----------------------------~h~~~v~  203 (612)
                        ..|...|.+++|+|+++++++++  |.|++||+++++....+.                            +|...|.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence              67889999999999999999987  899999999876543333                            3999999


Q ss_pred             EEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc---------ceeeEeecCCceeEEeEEecCCccCCC--CcEEEEEec
Q 007234          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISE  272 (612)
Q Consensus       204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~t~s~  272 (612)
                      +++|+  ++++++++ .|+.|++||+.+.....         ...+..+..+...+..+.|+     |+  +++|++++.
T Consensus       236 ~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~  307 (366)
T 3k26_A          236 CVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQ  307 (366)
T ss_dssp             EEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECT
T ss_pred             EEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEec
Confidence            99999  67888887 79999999998765310         11233344444445556665     77  999999999


Q ss_pred             CCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeecc--CC
Q 007234          273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SG  350 (612)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~  350 (612)
                      ||.|++||+.+++....                                                   ....+..|  ..
T Consensus       308 dg~i~vwd~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~  336 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKA---------------------------------------------------KCTTLTHHKCGA  336 (366)
T ss_dssp             TSCEEEEECCSSSGGGC---------------------------------------------------EEEEECCTTCCS
T ss_pred             CCcEEEEECCCCCCccc---------------------------------------------------cceEEcccccCC
Confidence            99999999877654210                                                   01133344  56


Q ss_pred             CeEEEEecCCCceEeccccceeeecceee
Q 007234          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       351 ~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      .|.+++|+|||++| ++++.|+.+++|++
T Consensus       337 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~  364 (366)
T 3k26_A          337 AIRQTSFSRDSSIL-IAVCDDASIWRWDR  364 (366)
T ss_dssp             CEEEEEECTTSSEE-EEEETTSEEEEEEC
T ss_pred             ceEEEEeCCCCCeE-EEEeCCCEEEEEEe
Confidence            89999999999999 99999999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.8e-33  Score=288.48  Aligned_cols=305  Identities=15%  Similarity=0.136  Sum_probs=235.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc------EEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |.++|.++  +|+|  ++|++|+.||.|+|||+.+++      .+..+.+|...+                  .++.|.+
T Consensus        15 h~~~i~~~--~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~~~   72 (397)
T 1sq9_A           15 HDADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL------------------HHVDVLQ   72 (397)
T ss_dssp             SSSCEEEE--EECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE------------------EEEEEEE
T ss_pred             hhcCeEEE--EecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcE------------------EEEEEec
Confidence            56788655  9999  899999999999999999988      677776665544                  4555554


Q ss_pred             cccccccccCC---cEEEEEECCCcEEEEEcCCCeE-----EEEeccCC-----CCCeEEEEEe----cCCCE-EEEEec
Q 007234           76 VDRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGA  137 (612)
Q Consensus        76 ~~~~~~~~~~~---~~l~~gs~~g~I~vwd~~~~~~-----~~~~~~~h-----~~~V~~l~~s----p~~~~-l~s~s~  137 (612)
                      ...     .++   .++++++.+|.|++||+.+++.     ...+ ..|     ...|.+++|+    |+++. |++++.
T Consensus        73 ~~~-----~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  146 (397)
T 1sq9_A           73 AIE-----RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV  146 (397)
T ss_dssp             EEE-----TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred             ccc-----cCCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence            300     004   6899999999999999998875     5555 567     5899999999    99999 999999


Q ss_pred             CCcEEEEECCC------CceeE-----EEe-------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec
Q 007234          138 DGMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (612)
Q Consensus       138 dg~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~  197 (612)
                      ||.|++||+.+      ++.+.     .+.       .|...|.+++|+|++ ++++++  |.|++||+++++.+..+.+
T Consensus       147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  225 (397)
T 1sq9_A          147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES  225 (397)
T ss_dssp             TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence            99999999988      66666     774       377899999999999 999888  8999999999999999999


Q ss_pred             ---C---CCCEEEEEEeeCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeecC-------------CceeEEeEEe
Q 007234          198 ---H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCI  255 (612)
Q Consensus       198 ---h---~~~v~~l~~sp~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  255 (612)
                         |   ...|.+++|+|++++|++++ .|   +.|++||+.+++..     ..+..             +...+..+.|
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEE
T ss_pred             cccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEE
Confidence               9   99999999999999999987 68   99999999987643     33333             4556677788


Q ss_pred             cCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeC
Q 007234          256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG  335 (612)
Q Consensus       256 ~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g  335 (612)
                      +     |++.+|++++.||.|++||+.+++.+..........        ...          .+           ...|
T Consensus       300 ~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~----------~~-----------~~~g  345 (397)
T 1sq9_A          300 N-----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI--------EIE----------ED-----------ILAV  345 (397)
T ss_dssp             C-----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC--------SSG----------GG-----------CCCB
T ss_pred             C-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc--------cch----------hh-----------hhcc
Confidence            7     999999999999999999999887655332100000        000          00           0000


Q ss_pred             CccCceEEEeeccCCCeEEEEecCCC----------ceEeccccceeeecceeeec
Q 007234          336 LLLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       336 ~~~~~~~~~~~~h~~~v~~l~~S~dg----------~~l~~s~s~d~~~~~w~~~~  381 (612)
                      ..     .....|...|.+++|+|||          .+| ++++.|+.+++|++.+
T Consensus       346 ~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          346 DE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEEC
T ss_pred             cc-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcCC
Confidence            00     0124568899999999999          688 9999999999999843

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.5e-33  Score=332.35  Aligned_cols=339  Identities=18%  Similarity=0.212  Sum_probs=268.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|.  +++|+|||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++                  ..   
T Consensus       656 h~~~v~--~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~---  712 (1249)
T 3sfz_A          656 HEDEVL--CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK------------------SN---  712 (1249)
T ss_dssp             CSSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------SS---
T ss_pred             CCCCEE--EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC------------------CC---
Confidence            456775  4599999999999999999999999999999999888776666655553                  11   


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-----
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----  156 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----  156 (612)
                          +.++++|+.||.|++||+.++++...+ .+|...|++++|+|+++.+++++.||+|++||+.+++....+.     
T Consensus       713 ----~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          713 ----HLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             ----CCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ----ceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence                568999999999999999999988776 5799999999999999999999999999999988775544332     


Q ss_pred             --------------------------------------------------cCCCCeeEEEECCCCCEEEEeC--CeEEEE
Q 007234          157 --------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTF  184 (612)
Q Consensus       157 --------------------------------------------------~~~~~v~~l~~spdg~~l~~~~--g~i~lw  184 (612)
                                                                        +|...+.+++|+|+++++++++  |.|++|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw  867 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW  867 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                                                              4567889999999999999998  899999


Q ss_pred             EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce--------------------------
Q 007234          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------------------  238 (612)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--------------------------  238 (612)
                      |+.+++.+..+.+|...|.+++|+|+|+++++++ .|+.|++|++.+.......                          
T Consensus       868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            9999999999999999999999999999999998 7999999997642111000                          


Q ss_pred             eeEe------ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234          239 CVLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (612)
Q Consensus       239 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  312 (612)
                      ....      .......+.+++++     |++.++++++.||.|++||+.+++.+.........+.+.. ++|+++    
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~---- 1016 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGK---- 1016 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSS----
T ss_pred             EEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCC----
Confidence            0000      00112235666776     9999999999999999999999887766555544444433 678877    


Q ss_pred             hhhcccccceecCCCc---------------------------------eEEEEeCCccCceEEEeeccCCCeEEEEecC
Q 007234          313 AIFAAKLQDIVKPASV---------------------------------HTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (612)
Q Consensus       313 ~i~~~~~d~~~~~~~~---------------------------------~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~  359 (612)
                      .+++++.|+.++.|+.                                 .+.+.+ .........+.+|...|.+++|+|
T Consensus      1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd-~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN-VITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp             CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE-TTTTCCCEEEECCSSCCCCEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE-CCCCceeEEEcccCCcEEEEEECC
Confidence            7888888887766541                                 111111 011234456778999999999999


Q ss_pred             CCceEeccccceeeecceeeec
Q 007234          360 DGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       360 dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      ||+++ ++++.|+++++|++..
T Consensus      1096 d~~~l-~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A         1096 DATKF-SSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp             SSSSC-EEECCSSCCCEECSSS
T ss_pred             CCCEE-EEEcCCCcEEEEECCC
Confidence            99999 9999999999998743

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.1e-33  Score=277.10  Aligned_cols=247  Identities=16%  Similarity=0.198  Sum_probs=199.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC--CcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |..+|+++  +|+|+|++||+|+.||+|+|||+.+  ++++.++.+|.+.|.++.|+++                 .+  
T Consensus         8 h~~~V~~~--~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~-----------------~~--   66 (297)
T 2pm7_B            8 HNEMIHDA--VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-----------------KF--   66 (297)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG-----------------GG--
T ss_pred             CcCceEEE--EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC-----------------Cc--
Confidence            56788666  9999999999999999999999974  4677888888777666555532                 01  


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~  153 (612)
                            +.+|++|+.||+|++||+.+++  .+..+ .+|...|.+++|+|+  +.+|++|+.|++|++||++++.  ...
T Consensus        67 ------g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           67 ------GTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             ------CSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             ------CCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence                  6789999999999999999874  33333 579999999999997  8899999999999999998763  245


Q ss_pred             EEecCCCCeeEEEECCC-------------CCEEEEeC--CeEEEEEcCCCe----eEEEEecCCCCEEEEEEeeCC---
Q 007234          154 KFRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG---  211 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spd-------------g~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~---  211 (612)
                      .+.+|...|.+++|+|+             +++|++|+  +.|++||+++++    ....+.+|...|.+++|+|++   
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence            67889999999999997             57899887  899999998765    567889999999999999985   


Q ss_pred             cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .+|++++ .|++|++||+................+...+..+.|+     |+|++|++++.||.|++|+..
T Consensus       220 ~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred             eEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence            7888887 7999999999875321000111112234456677787     999999999999999999965

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-34  Score=304.68  Aligned_cols=311  Identities=12%  Similarity=-0.003  Sum_probs=212.8

Q ss_pred             EEEEEeCCCcEEEEECCCCcEE----EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234           19 YFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~   94 (612)
                      .||+++.|++|+|||+.++++.    ..+.+|.+.+                  ..+.|.|....   ...+.+|++|+.
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V------------------~~v~wsp~~~~---~~~~~~LAs~s~  233 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV------------------WDLKWHEGCHA---PHLVGCLSFVSQ  233 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSE------------------EEEEECSSCCC---SSSSCEEEEEET
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE------------------EEEEECCCCCC---CCCCceEEEEec
Confidence            3444567899999999887642    2344444433                  45555543100   001578999999


Q ss_pred             CCcEEEEEcCCCeEE----------EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEEecCCCCee
Q 007234           95 GGDVLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGIS  163 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~----------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~v~  163 (612)
                      ||+|++||+.++...          .....+|...|++++|+|++ .|++|+.||+|++||+++++ +...+.+|...|.
T Consensus       234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~  312 (524)
T 2j04_B          234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL  312 (524)
T ss_dssp             TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred             CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence            999999999876421          01235799999999999864 89999999999999999774 4567889999999


Q ss_pred             EE--EECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCC--CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          164 CM--AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       164 ~l--~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      ++  .|+|+| .+|++++  ++|++||++++++...+.+|..  .|.+++|+|+++.+++++ .|++|++||++++... 
T Consensus       313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~-  390 (524)
T 2j04_B          313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV-  390 (524)
T ss_dssp             EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC-
T ss_pred             EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc-
Confidence            99  578888 8999988  8999999999888777777764  588999999999988887 7999999999987643 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce-----eEeecccccCCCCcccc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSAT  311 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~  311 (612)
                          ..+..+...+..++|+     |+|.+|++|+.||+|++||.... .+..+....     ..+-.. .++|+++   
T Consensus       391 ----~~l~gH~~~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v-~~sp~g~---  456 (524)
T 2j04_B          391 ----HPLVSRETTITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKW-DYSIKDD---  456 (524)
T ss_dssp             ----EEEEECSSCEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEEC-BCCSSSC---
T ss_pred             ----eeeecCCCceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEe-ccCCCCC---
Confidence                2333455566777887     99999999999999999998654 333222110     011111 2566554   


Q ss_pred             hhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc---eEeccccceeeecceee
Q 007234          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~---~l~~s~s~d~~~~~w~~  379 (612)
                       .+..   ....+++.   +..    ......++.+|...|.+++|+|++.   ++ ++|+.|+.+|+|++
T Consensus       457 -~~~~---~~~~~~~~---~~~----~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l  515 (524)
T 2j04_B          457 -KYRI---DSSYEVYP---LTV----NDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYL  515 (524)
T ss_dssp             -EEEE---CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEEC
T ss_pred             -eEEc---cCCceecc---ccc----CCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEc
Confidence             1111   11111111   000    1123446778999999999999964   88 99999999999987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=315.82  Aligned_cols=339  Identities=9%  Similarity=0.042  Sum_probs=240.2

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ..+|+.+  +|+| |++|++++.|++|+|||+.+++++..+. +...+.++.|+++                        
T Consensus        58 ~~~V~~l--~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~------------------------  109 (902)
T 2oaj_A           58 RSAIKEM--RFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDAS------------------------  109 (902)
T ss_dssp             CCCEEEE--EEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTT------------------------
T ss_pred             CCCEEEE--EEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCC------------------------
Confidence            4578655  9999 8899999999999999999999988885 4444555555444                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEE----------EeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCce
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL  151 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~----------~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~  151 (612)
                         +.++++|+.||.|++||+.++....          ....+|.+.|++++|+|+ +..+++|+.||.| +||++++++
T Consensus       110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~  185 (902)
T 2oaj_A          110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI  185 (902)
T ss_dssp             ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred             ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence               8899999999999999999987641          123679999999999995 4689999999999 999999999


Q ss_pred             eEEEecC------------------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE--E---ec---------
Q 007234          152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG---------  197 (612)
Q Consensus       152 ~~~~~~~------------------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~--~---~~---------  197 (612)
                      +..+..|                  ...|.+++|+|+|++|++++  |.|++||+++++++..  +   .+         
T Consensus       186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~  265 (902)
T 2oaj_A          186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR  265 (902)
T ss_dssp             EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred             EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence            9888765                  46799999999999999998  8999999999987653  2   12         


Q ss_pred             ----CCCCEEEEEEee----CC-cEEEEEEcCC-----CeEEEEEcCC------------------Ccccc---------
Q 007234          198 ----HPGAVRFMTFSD----NG-KYVLSSAVGE-----RYIALWRTDG------------------VKKQS---------  236 (612)
Q Consensus       198 ----h~~~v~~l~~sp----~~-~~l~s~s~~d-----~~i~vwd~~~------------------~~~~~---------  236 (612)
                          |..+|.+++|++    ++ ..+++++ .|     +.+.+|++..                  .+...         
T Consensus       266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  344 (902)
T 2oaj_A          266 DSSTNAAKISKVYWMCENNPEYTSLLISHK-SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP  344 (902)
T ss_dssp             CCSSCCCEEEEEEEEECSSTTEEEEEEEEE-CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred             CCccccCCeeEEEEEecCCCCCCEEEEeCC-CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence                345799999965    33 3455554 34     2677777310                  00000         


Q ss_pred             -------------------c-----------eeeEeec----------------CCceeEEeEEec--------------
Q 007234          237 -------------------A-----------SCVLAME----------------HPAVFMDCRCID--------------  256 (612)
Q Consensus       237 -------------------~-----------~~~~~~~----------------~~~~~~~~~~~~--------------  256 (612)
                                         .           ..++.+.                .+...+.++.++              
T Consensus       345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~  424 (902)
T 2oaj_A          345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA  424 (902)
T ss_dssp             EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence                               0           0000000                000111122221              


Q ss_pred             ---------------CCccCCCCcEEEEEecCCcEEEEECCCcceecc--cC---------CceeEeecccccCCCCccc
Q 007234          257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TK---------ATKILSSSEDVNSKSQKSA  310 (612)
Q Consensus       257 ---------------~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~--~~---------~~~~~~~~~~~~s~~~~~~  310 (612)
                                     ...++|++++|++|+.||+|++||+.++.....  ..         .....+.+.. |+|+++  
T Consensus       425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva-fspdg~--  501 (902)
T 2oaj_A          425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS-FAAETL--  501 (902)
T ss_dssp             BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE-EETTTT--
T ss_pred             cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE-ecCCCC--
Confidence                           012358899999999999999999988743210  00         1122233333 889998  


Q ss_pred             chhhhcccccceecCCCceEEEEeCC-----------------c-----------------c---CceEEEeeccCCCeE
Q 007234          311 TAAIFAAKLQDIVKPASVHTFVAYGL-----------------L-----------------L---KPSFQKILVNSGEDI  353 (612)
Q Consensus       311 ~~~i~~~~~d~~~~~~~~~~~~~~g~-----------------~-----------------~---~~~~~~~~~h~~~v~  353 (612)
                        .+++|+.|+.+++|+-.-...++.                 .                 .   ......+.+|.+.|+
T Consensus       502 --~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~  579 (902)
T 2oaj_A          502 --ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS  579 (902)
T ss_dssp             --EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred             --eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence              899999999888887321100000                 0                 0   022456778999999


Q ss_pred             EEEecCCCceEeccccceeeecceeeec
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      +++||||| +| ++|+.|+++++|++..
T Consensus       580 svafSpdG-~l-Asgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          580 AINNSNIG-FV-GIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             EEEECBTS-EE-EEEETTSEEEEEETTT
T ss_pred             EEEecCCc-EE-EEEeCCCcEEEEECCC
Confidence            99999999 88 9999999999999754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.2e-32  Score=272.70  Aligned_cols=241  Identities=20%  Similarity=0.243  Sum_probs=204.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|+++  +|+|||++|++|+.||+|+|||+.+++.+..+.+|...+.++.|+++                       
T Consensus        64 h~~~v~~~--~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------  118 (319)
T 3frx_A           64 HSHIVQDC--TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-----------------------  118 (319)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred             CcccEEEE--EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC-----------------------
Confidence            45677555  99999999999999999999999999999999988887777777666                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC------CCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~------~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                          +.++++|+.||.|++||+.. .++..+ .+|...|.++.|+|.      +..+++++.|++|++||+.+++....+
T Consensus       119 ----~~~l~s~s~D~~i~vwd~~~-~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  192 (319)
T 3frx_A          119 ----ASMIISGSRDKTIKVWTIKG-QCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF  192 (319)
T ss_dssp             ----SCEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ----CCEEEEEeCCCeEEEEECCC-CeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence                88999999999999999974 445455 579999999999985      448999999999999999999999999


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      .+|...|.+++|+|+|++|++++  |.|++||+.+++.+..+.. ..+|.+++|+|++.++++++  ++.+++|++....
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~  269 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQY  269 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCe
Confidence            99999999999999999999988  8999999999999998875 46899999999999988775  5569999998764


Q ss_pred             cccceeeEe------ecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          234 KQSASCVLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       234 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ...   ...      ...+...+..++|+     |||++|++|+.||.|++||+.++
T Consensus       270 ~~~---~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          270 LVD---DLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEE---EECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred             eee---ccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence            321   010      01122334567787     99999999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-32  Score=282.33  Aligned_cols=239  Identities=20%  Similarity=0.275  Sum_probs=203.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++|+|||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++                           +.++
T Consensus       128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~---------------------------~~~l  180 (393)
T 1erj_A          128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---------------------------GDKL  180 (393)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------------SSEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC---------------------------CCEE
Confidence            4599999999999999999999999999999999888877776666665                           7889


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-------ecCCCC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTKG  161 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-------~~~~~~  161 (612)
                      ++|+.||.|++||+.++++...+.  +...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+       .+|...
T Consensus       181 ~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~  258 (393)
T 1erj_A          181 VSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS  258 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             EEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence            999999999999999999876663  667899999999 8999999999999999999999888776       567889


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCC------------eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~------------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      |.+++|+|+|++|++++  |.|++||+++.            .+...+.+|...|.+++|+|++.+|++++ .|+.|++|
T Consensus       259 v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~iw  337 (393)
T 1erj_A          259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFW  337 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEEE
Confidence            99999999999999998  89999999753            34567889999999999999999999988 79999999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecC-CccCCCCcEEEEEecCCcEEEEECCC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDN-GGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      |+.+++..     ..+..+...+..+.+++ ..++|++.+|++|+.||.|++|++..
T Consensus       338 d~~~~~~~-----~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          338 DKKSGNPL-----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ETTTCCEE-----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ECCCCeEE-----EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99988643     34444444555565652 23446899999999999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=314.93  Aligned_cols=197  Identities=14%  Similarity=0.130  Sum_probs=166.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .++|+++  +|+|+|++||+|+.||+|+|||..+++....+. |..                  .+.++.|.+       
T Consensus        17 ~~~V~~l--afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~------------------~V~~l~fsp-------   68 (902)
T 2oaj_A           17 SSKPIAA--AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRS------------------AIKEMRFVK-------   68 (902)
T ss_dssp             SSCEEEE--EEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCC------------------CEEEEEEET-------
T ss_pred             CCCcEEE--EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCC------------------CEEEEEEcC-------
Confidence            5678555  999999999999999999999998877665442 222                  455666665       


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee----------
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----------  152 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~----------  152 (612)
                         +.+|++++.|+.|++||+.+++++..+.  |...|++++|+|+++++++|+.||+|++||+.+++..          
T Consensus        69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence               3489999999999999999999887773  7789999999999999999999999999999988764          


Q ss_pred             -EEEecCCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecC------------------CCCEEEEEEeeC
Q 007234          153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN  210 (612)
Q Consensus       153 -~~~~~~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------------~~~v~~l~~sp~  210 (612)
                       ..+.+|..+|.+++|+|+ +..+++|+  |.| +||+++++.+..+.+|                  ...|.+++|+|+
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence             223567889999999996 46788877  899 9999999999888766                  577999999999


Q ss_pred             CcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          211 GKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      |++|++++ .|+.|++||+.+++.
T Consensus       223 g~~lasgs-~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          223 SLHIITIH-EDNSLVFWDANSGHM  245 (902)
T ss_dssp             SSEEEEEE-TTCCEEEEETTTCCE
T ss_pred             CCEEEEEE-CCCeEEEEECCCCcE
Confidence            99999998 799999999987653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4e-32  Score=299.30  Aligned_cols=328  Identities=12%  Similarity=0.132  Sum_probs=253.3

Q ss_pred             Ccc-cceeEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------cEEEEeeccCCccccccccccccccccccceeEE
Q 007234            3 SSN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (612)
Q Consensus         3 s~~-V~~l~~~fsp--dg~~las~s~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~   71 (612)
                      ..+ |.++  +|+|  ||++||+|+.||.|+|||+.++        +....+..|...+.++.|+++             
T Consensus        63 ~~~~v~~~--~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------  127 (615)
T 1pgu_A           63 GSSVVTTV--KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-------------  127 (615)
T ss_dssp             TTSCEEEE--EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-------------
T ss_pred             CCceEEEE--EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC-------------
Confidence            456 7555  9999  9999999999999999999855        667777777766666666655             


Q ss_pred             EeeecccccccccCCcEEEEEECC----CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEEC
Q 007234           72 KWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDP  146 (612)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~gs~~----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~  146 (612)
                                    +.++++++.+    +.|.+||  .++.+..+ .+|...|++++|+|+++ .+++++.|+.|++||+
T Consensus       128 --------------~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          128 --------------GRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             --------------SSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             --------------CCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence                          7889999887    6788888  56666555 67999999999999998 7999999999999999


Q ss_pred             CCCceeEEEecCCC---CeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEE-e---cCCCCEEEEEEeeCCcEEEE
Q 007234          147 LTGSLLGKFRASTK---GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF-S---GHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       147 ~~~~~~~~~~~~~~---~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~-~---~h~~~v~~l~~sp~~~~l~s  216 (612)
                      .+++.+..+..|..   .|.+++|+|+ ++++++++  |.|++||+++++.+..+ .   +|..+|.+++|+ +++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~  269 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT  269 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred             CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence            99999999999998   9999999999 99999887  89999999999999999 6   899999999999 9999999


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCC----ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      ++ .|+.|++||+.+++..     ..+..+    ...+..+.+      +++.++++++.||.|++||+.+++.+.....
T Consensus       270 ~~-~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  337 (615)
T 1pgu_A          270 VG-ADATIRVWDVTTSKCV-----QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYELGHDEVLKTISG  337 (615)
T ss_dssp             EE-TTSEEEEEETTTTEEE-----EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred             Ec-CCCcEEEEECCCCcEE-----EEEcCCCCcccCceeEEEe------CCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence            88 7999999999987643     233322    233334444      4778999999999999999998776655443


Q ss_pred             ceeEeeccc--------------------------------ccCCCCcccchhhhcccccceecCCCceE----------
Q 007234          293 TKILSSSED--------------------------------VNSKSQKSATAAIFAAKLQDIVKPASVHT----------  330 (612)
Q Consensus       293 ~~~~~~~~~--------------------------------~~s~~~~~~~~~i~~~~~d~~~~~~~~~~----------  330 (612)
                      ....+.+..                                .+ +++.    .+++++.++.++.|+..-          
T Consensus       338 ~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~----~l~~~~~d~~i~~~~~~~~~~~~~~~~~  412 (615)
T 1pgu_A          338 HNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQ----EYSSISWDDTLKVNGITKHEFGSQPKVA  412 (615)
T ss_dssp             CSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTT----CCEEEETTTEEEETTEEEEECSSCEEEE
T ss_pred             CCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCc----EEEEEeCCCCEEEEEcccCcccCCceEE
Confidence            322211111                                01 1122    667777777766665321          


Q ss_pred             ----------------------------------------------EEE----eCCcc-----CceE--EEeeccCCCeE
Q 007234          331 ----------------------------------------------FVA----YGLLL-----KPSF--QKILVNSGEDI  353 (612)
Q Consensus       331 ----------------------------------------------~~~----~g~~~-----~~~~--~~~~~h~~~v~  353 (612)
                                                                    ++.    +|...     ....  ..+..|...|.
T Consensus       413 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~  492 (615)
T 1pgu_A          413 SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS  492 (615)
T ss_dssp             EECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred             EEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceE
Confidence                                                          000    01000     0001  34456888999


Q ss_pred             EEEecCCCceEeccccceeeecceeeec
Q 007234          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       354 ~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      +++|+|||++| ++++.|+.+++|++.+
T Consensus       493 ~~~~s~~g~~l-~~~~~dg~i~iw~~~~  519 (615)
T 1pgu_A          493 YISISPSETYI-AAGDVMGKILLYDLQS  519 (615)
T ss_dssp             EEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred             EEEECCCCCEE-EEcCCCCeEEEeeCCC
Confidence            99999999999 9999999999999854

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.4e-32  Score=299.85  Aligned_cols=330  Identities=11%  Similarity=0.050  Sum_probs=254.2

Q ss_pred             CcccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ..+|..+  +|+|+++ ++++++.||.|++||..+++.+..+.+|...               ...+.++.|.+.+    
T Consensus       160 ~~~v~~~--~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~----  218 (615)
T 1pgu_A          160 SQRINAC--HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ---------------GSFVRDVEFSPDS----  218 (615)
T ss_dssp             SSCEEEE--EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT---------------TCCEEEEEECSTT----
T ss_pred             CccEEEE--EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC---------------CceEEEEEECCCC----
Confidence            4567555  9999998 7999999999999999999999988766540               0134455565542    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                          +.++++++.+|.|++||+.+++.+..+..   +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus       219 ----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          219 ----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             ----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence                56899999999999999999999877745   799999999999 9999999999999999999999999998876


Q ss_pred             C----CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC----------------------
Q 007234          159 T----KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN----------------------  210 (612)
Q Consensus       159 ~----~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~----------------------  210 (612)
                      .    ..+.++.|+ +++++++++  |.|++||+.+++.+..+.+|..+|.+++| |+                      
T Consensus       294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~  371 (615)
T 1pgu_A          294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH  371 (615)
T ss_dssp             TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred             CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence            3    577888886 888888887  89999999998888888877776666666 43                      


Q ss_pred             -----------CcEEEEEEcCCCeEEEEEcCCCcc----------------------------------c----------
Q 007234          211 -----------GKYVLSSAVGERYIALWRTDGVKK----------------------------------Q----------  235 (612)
Q Consensus       211 -----------~~~l~s~s~~d~~i~vwd~~~~~~----------------------------------~----------  235 (612)
                                 +..+++++ .|+.+++|++.+++.                                  .          
T Consensus       372 ~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          372 SNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             cCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence                       55556655 466666666543110                                  0          


Q ss_pred             ----------------cce---------ee-EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          236 ----------------SAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       236 ----------------~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                                      ...         .. ..+..+...+..+.|+     |++++|++++.||.|++||+.+++.+..
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~~~~~  525 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSREVKTS  525 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence                            000         00 2222344456667776     9999999999999999999999998877


Q ss_pred             cCC-ceeEeecccccCC----------CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEec
Q 007234          290 TKA-TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (612)
Q Consensus       290 ~~~-~~~~~~~~~~~s~----------~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S  358 (612)
                      ... ....+.+.. ++|          +++    .+++++.|+.+++|+.       .........+.+|...|.+++|+
T Consensus       526 ~~~~h~~~v~~~~-~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~-------~~~~~~~~~~~~h~~~v~~l~~s  593 (615)
T 1pgu_A          526 RWAFRTSKINAIS-WKPAEKGANEEEIEED----LVATGSLDTNIFIYSV-------KRPMKIIKALNAHKDGVNNLLWE  593 (615)
T ss_dssp             CSCCCSSCEEEEE-ECCCC------CCSCC----EEEEEETTSCEEEEES-------SCTTCCEEETTSSTTCEEEEEEE
T ss_pred             eecCCCCceeEEE-EcCccccccccccCCC----EEEEEcCCCcEEEEEC-------CCCceechhhhcCccceEEEEEc
Confidence            654 433344333 777          776    8899998877776651       11124556778899999999999


Q ss_pred             CCCceEeccccceeeecceeee
Q 007234          359 QDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      |||+ | ++++.|+++++|++.
T Consensus       594 ~~~~-l-~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          594 TPST-L-VSSGADACIKRWNVV  613 (615)
T ss_dssp             ETTE-E-EEEETTSCEEEEEEC
T ss_pred             CCCC-e-EEecCCceEEEEeee
Confidence            9999 8 999999999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-31  Score=281.72  Aligned_cols=271  Identities=14%  Similarity=0.242  Sum_probs=220.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--cCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ++||++ ++||+|. |++|+|||..+|++...+..  |...|.                  +++|.+.         +.+
T Consensus       111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~------------------sv~fspd---------g~~  161 (420)
T 4gga_A          111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS------------------SVAWIKE---------GNY  161 (420)
T ss_dssp             EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE------------------EEEECTT---------SSE
T ss_pred             EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE------------------EEEECCC---------CCE
Confidence            599986 4788776 89999999999998887753  333344                  5555443         889


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAV  167 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~  167 (612)
                      |++|+.||.|++||+.+++.+..+ .+|...+.+++++  +..+++|+.|+.+++||.... ..+..+.+|...+..+.+
T Consensus       162 lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~  238 (420)
T 4gga_A          162 LAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  238 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence            999999999999999999998776 6799999998875  679999999999999998764 556778999999999999


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCe----eEEEEecCCCCEEEEEEeeCCc-EEEEE-EcCCCeEEEEEcCCCcccccee
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGK-YVLSS-AVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~-~l~s~-s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +|+++++++++  +.+++||..+++    .+.....|...|.+++|+|++. .++++ ++.|++|++||+.++...    
T Consensus       239 ~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----  314 (420)
T 4gga_A          239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----  314 (420)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----
T ss_pred             cCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----
Confidence            99999999988  899999998764    3567788999999999999765 44443 346999999999988643    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                       ..+..+..+.. ..++     +++..+++++  .||.|++||+.+++.+.                             
T Consensus       315 -~~~~~~~~v~~-~~~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~-----------------------------  358 (420)
T 4gga_A          315 -SAVDAHSQVCS-ILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA-----------------------------  358 (420)
T ss_dssp             -EEEECSSCEEE-EEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-----------------------------
T ss_pred             -eeeccccceee-eeec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE-----------------------------
Confidence             44445555544 4454     7888887765  68999999987665432                             


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                ++.+|.+.|.+++|||||++| +|||.|+++++|++.
T Consensus       359 --------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~  394 (420)
T 4gga_A          359 --------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF  394 (420)
T ss_dssp             --------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred             --------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence                                      456788899999999999999 999999999999873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=267.77  Aligned_cols=273  Identities=20%  Similarity=0.247  Sum_probs=227.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|+++  +| |++++|++|+.||.|++||+.+++....+..|...+.++.|+++                       
T Consensus        17 h~~~v~~~--~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------   70 (313)
T 3odt_A           17 HDQDVRDV--VA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-----------------------   70 (313)
T ss_dssp             CSSCEEEE--EE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-----------------------
T ss_pred             CCCCcEEE--Ee-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-----------------------
Confidence            46788655  99 99999999999999999999999998888877766665555555                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCC---eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                          +.++++|+.+|.|++|++...   +....+ .+|...|.+++|  +++.+++++.||.|++||  .++....+..|
T Consensus        71 ----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~  141 (313)
T 3odt_A           71 ----KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH  141 (313)
T ss_dssp             ----TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred             ----CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence                889999999999999998765   344444 679999999999  577999999999999999  78888899999


Q ss_pred             CCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       159 ~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ...+.+++|+| +++++++++  |.|++||  .++....+.. |...+.+++|+|++. +++++ .|+.|++||+.+++.
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDV  217 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCE
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhh
Confidence            99999999988 899999888  8999999  5667777877 999999999999998 77776 799999999998764


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhh
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i  314 (612)
                      .     ..+..+...+..+.|+     |++ .+++++.||.|++||+.+++.+.                          
T Consensus       218 ~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------------------  260 (313)
T 3odt_A          218 L-----RTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ--------------------------  260 (313)
T ss_dssp             E-----EEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE--------------------------
T ss_pred             h-----hhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE--------------------------
Confidence            3     4455555667778887     888 58999999999999987664321                          


Q ss_pred             hcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                                   .+..|...|.+++|+|||++  ++++.|+.+++|++.+
T Consensus       261 -----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          261 -----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             -----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESCG
T ss_pred             -----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCCC
Confidence                                         33456668999999999994  5688899999999844

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=290.59  Aligned_cols=257  Identities=12%  Similarity=0.170  Sum_probs=194.9

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------EEEEeeccCCccccccccccccccccccceeEE
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~   71 (612)
                      ..+|.++  +|+|+|++||+|+.||.|+|||+.+++           +...+.+|........      .-.....+.++
T Consensus        28 ~~~V~~v--~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~V~~l   99 (447)
T 3dw8_B           28 ADIISTV--EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK------SLEIEEKINKI   99 (447)
T ss_dssp             GGSEEEE--EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG------TEEECCCCCEE
T ss_pred             cCcEEEE--EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccc------cccccCceEEE
Confidence            4577544  999999999999999999999999887           4677776652100000      00001235566


Q ss_pred             EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE---------------------------------------EEe
Q 007234           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL  112 (612)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~---------------------------------------~~~  112 (612)
                      .|.+...       ...+++++.||.|++||+.++...                                       ..+
T Consensus       100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B          100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence            6665421       268999999999999999875432                                       133


Q ss_pred             ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-CceeEE-------EecCCCCeeEEEECCCC-CEEEEeC--CeE
Q 007234          113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGK-------FRASTKGISCMAVSSDG-KMLATAA--GQL  181 (612)
Q Consensus       113 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~~~~-------~~~~~~~v~~l~~spdg-~~l~~~~--g~i  181 (612)
                      ..+|...|++++|+|++++|++| .|+.|++||+.+ ++.+..       +..|...|.+++|+|++ +++++++  |.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            46899999999999999999998 799999999984 444442       45788899999999998 8999988  899


Q ss_pred             EEEEcCCCee----EEEEecCCC------------CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC-CccccceeeEeec
Q 007234          182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME  244 (612)
Q Consensus       182 ~lwd~~~~~~----~~~~~~h~~------------~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~  244 (612)
                      ++||+++++.    +..+.+|..            .|.+++|+|+|++|++++ . +.|++||+.. ++..     ..+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~  324 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ  324 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence            9999999886    788888886            899999999999999886 5 9999999987 5433     2222


Q ss_pred             CCceeE---------------EeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      .+....               ..++|+     |++.+|++++.||.|++||+.+++.+
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence            222211               125676     99999999999999999999988765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-31  Score=285.30  Aligned_cols=306  Identities=12%  Similarity=0.178  Sum_probs=239.0

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      ++++++++|++|+.||+|++||+.+++.+..+.+|.+.+.++.|+++                           + .+++
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---------------------------~-~l~s  178 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---------------------------G-ILVS  178 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST---------------------------T-EEEE
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC---------------------------C-EEEE
Confidence            45557889999999999999999999999999888877766655543                           4 8999


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCce------------------
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSL------------------  151 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~------------------  151 (612)
                      |+.||.|++||+.+++.+..+ .+|...|.+++|++  +++++++|+.||+|++||+.+++.                  
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            999999999999999988776 57999999999984  778999999999999999987653                  


Q ss_pred             -----eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       152 -----~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                           +..+.+|...+.++  +++++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus       258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i  334 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI  334 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred             CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence                 45667777777776  57789999988  8999999999999999999999999999999999999988 79999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc-eeEeeccccc
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT-KILSSSEDVN  303 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  303 (612)
                      ++||+.+++.     +..+..+...+..+.++       +.++++++.||.|++||+.++......... ....   ..+
T Consensus       335 ~vwd~~~~~~-----~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---~~~  399 (464)
T 3v7d_B          335 RIWDLENGEL-----MYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI---TTF  399 (464)
T ss_dssp             EEEETTTTEE-----EEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCE---EEE
T ss_pred             EEEECCCCcE-----EEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccE---EEE
Confidence            9999998763     34555566666677664       589999999999999999987655433211 1111   124


Q ss_pred             CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEE-EeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ-KILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      +++++    .+++++ ++.+++|+        ........ .+..|...|++++|+  +..++++++.|+...+|-+
T Consensus       400 ~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          400 YVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred             EeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence            55655    666666 66666554        11122222 245677889999997  5555477777776666543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-33  Score=292.03  Aligned_cols=315  Identities=13%  Similarity=0.128  Sum_probs=223.1

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC---Cc---EEEEeeccCCccccccccccccccccccceeEEEee
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~   74 (612)
                      ++++|+++  +|+| +|++||+|+.||+|+|||+.+   +.   ....+ .|...                  +.++.|.
T Consensus        62 h~~~V~~~--~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~------------------v~~~~~~  120 (437)
T 3gre_A           62 EPNSITSS--AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSST------------------VTQITMI  120 (437)
T ss_dssp             TTSCEEEE--EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSC------------------EEEEEEC
T ss_pred             CCCceEEE--EECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCC------------------EEEEEEe
Confidence            46788655  9999 999999999999999999876   33   22222 24444                  4455555


Q ss_pred             ecccccccccCCcEEEEEECCCcEEEEEcC---CCeEEEEe--------c-cC--CCCCeEEEE--EecCCCEEEEEecC
Q 007234           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGAD  138 (612)
Q Consensus        75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~---~~~~~~~~--------~-~~--h~~~V~~l~--~sp~~~~l~s~s~d  138 (612)
                      +.         +.++++|+.||.|++||+.   +++.....        . ..  +...+.++.  +++++.+|++|+.|
T Consensus       121 ~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          121 PN---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             TT---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred             CC---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence            42         7889999999999999995   45443221        1 11  566777777  55789999999999


Q ss_pred             CcEEEEECCCCceeEEEec--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEe----e
Q 007234          139 GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS----D  209 (612)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s----p  209 (612)
                      +.|++||+++++++..+..  |...|++++|+|++++|++|+  |.|++||+++++++..+. +|..+|.+++|+    |
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK  271 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred             CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence            9999999999999999998  788999999999999999998  899999999999999886 788899999665    4


Q ss_pred             CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC--------------------------CceeEEeEEecCCccCCC
Q 007234          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--------------------------PAVFMDCRCIDNGGVDDA  263 (612)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~  263 (612)
                      ++.++++++ .|+.|++||+.+++..     ..+..                          +...+..++|+      +
T Consensus       272 ~~~~l~s~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~  339 (437)
T 3gre_A          272 NSVIVVGGS-SKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------N  339 (437)
T ss_dssp             TEEEEEEES-TTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------T
T ss_pred             CccEEEEEc-CCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------C
Confidence            677888886 7999999999987643     11111                          22334455563      5


Q ss_pred             CcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEe-CCccCceE
Q 007234          264 GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSF  342 (612)
Q Consensus       264 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~-g~~~~~~~  342 (612)
                      +.+|++++.||.|++||+.+++.+............   +.+           .     ....+....... ........
T Consensus       340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~  400 (437)
T 3gre_A          340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIP-----------T-----QVTANLTMLLRKMKRTSTHSV  400 (437)
T ss_dssp             TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEE-----------E-----EEETTEEEEEEECC-------
T ss_pred             ceEEEecCCCCeEEEEECCCcccceEEecccccCce---EEE-----------E-----EeecceEEEEEeccccccccc
Confidence            589999999999999999998876544332110000   000           0     000011111111 00111112


Q ss_pred             EEeeccCCCeEEEEecCC--CceEeccccceeeeccee
Q 007234          343 QKILVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       343 ~~~~~h~~~v~~l~~S~d--g~~l~~s~s~d~~~~~w~  378 (612)
                      .....|...|.+++++++  +.+| +||+.|+.+++|+
T Consensus       401 ~~~~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~  437 (437)
T 3gre_A          401 DDSLYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ  437 (437)
T ss_dssp             ------CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred             CcccccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence            344569999999999998  7788 9999999999994

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-31  Score=278.56  Aligned_cols=279  Identities=15%  Similarity=0.177  Sum_probs=228.5

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-cCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +...+++|++  ..+++++.||.|++||+.+++....+.. |..                  .+.++.|.+.        
T Consensus        94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~------------------~v~~v~~s~~--------  145 (401)
T 4aez_A           94 YYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDEST------------------YVASVKWSHD--------  145 (401)
T ss_dssp             TTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTC------------------CEEEEEECTT--------
T ss_pred             ceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCC------------------CEEEEEECCC--------
Confidence            3344456665  5577888999999999999998877754 333                  3445555543        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC-CCceeEEEecCCCCee
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGIS  163 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~v~  163 (612)
                       +.++++|+.+|.|++||+.+++.+..+ .+|...|.+++|+  ++.+++++.||.|++||++ .+..+..+..|...|.
T Consensus       146 -~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  221 (401)
T 4aez_A          146 -GSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC  221 (401)
T ss_dssp             -SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             -CCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence             789999999999999999999988777 5799999999994  5799999999999999998 5677888999999999


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCcccccee
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +++|+|+++++++++  |.|++||+++++.+..+.+|...|.+++|+|++..++++++  .|+.|++||+.+++..    
T Consensus       222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----  297 (401)
T 4aez_A          222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----  297 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----
Confidence            999999999999988  89999999999999999999999999999998765555542  5999999999987643    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                       ..+.+.. .+..+.|+     |++.++++++  .||.|++||+.+++...                             
T Consensus       298 -~~~~~~~-~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~-----------------------------  341 (401)
T 4aez_A          298 -NTVDAGS-QVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTK-----------------------------  341 (401)
T ss_dssp             -EEEECSS-CEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEE-----------------------------
T ss_pred             -EEEeCCC-cEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCcccee-----------------------------
Confidence             3444443 45667787     9999999954  89999999976543211                             


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                              ...+.+|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus       342 ------------------------~~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          342 ------------------------QVDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVYD  380 (401)
T ss_dssp             ------------------------EEEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECCC
T ss_pred             ------------------------EEEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECCC
Confidence                                    00345677789999999999999 9999999999999843

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.4e-32  Score=281.13  Aligned_cols=301  Identities=12%  Similarity=0.078  Sum_probs=228.5

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +.++|.++  +|+| +|++||+|+.||.|++||+.+++....+......  .  .......+ ....+.++.|.+.+   
T Consensus        42 h~~~v~~~--~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~~v~~~~~~~~~---  111 (408)
T 4a11_B           42 HGGGINTL--DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC--S--IGRDHPDV-HRYSVETVQWYPHD---  111 (408)
T ss_dssp             CSSCEEEE--EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE--E--ECTTCTTC-CSSCEEEEEECTTC---
T ss_pred             cCCcEEEE--EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc--c--cccccccc-CCCcEEEEEEccCC---
Confidence            56788555  9999 9999999999999999999988755443210000  0  00000001 13356677776643   


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC---CEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                           +.++++++.+|.|++||+.+++....+.  +...+.++.|+|.+   .++++++.|+.|++||+.+++.+..+..
T Consensus       112 -----~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          112 -----TGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             -----TTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             -----CcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence                 6789999999999999999999886663  77889999999854   4899999999999999999999999999


Q ss_pred             CCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCe-eEEEE---------------ecCCCCEEEEEEeeCCcEEEEEE
Q 007234          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       158 ~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~-~~~~~---------------~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      |...|.+++|+|+++ ++++++  |.|++||++++. .+..+               .+|...|.+++|+|+++++++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999999999998 477776  899999998775 34444               57889999999999999999998


Q ss_pred             cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEee
Q 007234          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (612)
                       .|+.|++||+.+++.......................     ..+..+++++.||.|++||+.+++.+.          
T Consensus       265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~----------  328 (408)
T 4a11_B          265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT----------  328 (408)
T ss_dssp             -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE----------
T ss_pred             -CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee----------
Confidence             7999999999987644111000111111112222222     445667788889999999987665432          


Q ss_pred             cccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       299 ~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                                   .+.+|...|.+++|+|||++| ++++.|+.+++|+
T Consensus       329 ---------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~  362 (408)
T 4a11_B          329 ---------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWV  362 (408)
T ss_dssp             ---------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred             ---------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEe
Confidence                                                         344677789999999999999 9999999999999


Q ss_pred             eec
Q 007234          379 VQN  381 (612)
Q Consensus       379 ~~~  381 (612)
                      +..
T Consensus       363 ~~~  365 (408)
T 4a11_B          363 PSL  365 (408)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.8e-31  Score=270.69  Aligned_cols=276  Identities=13%  Similarity=0.208  Sum_probs=222.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---Eee--ccCCccccccccccccccccccceeEEEeeec
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---EFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~---~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      +..+|.++  +|+|++++|++++ ||.|++||+.++....   .+.  .|..                  ...++.|.+.
T Consensus        50 h~~~v~~~--~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~  108 (337)
T 1gxr_A           50 HGEVVCAV--TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN------------------YIRSCKLLPD  108 (337)
T ss_dssp             CSSCCCEE--EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS------------------BEEEEEECTT
T ss_pred             CCCceEEE--EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCC------------------cEEEEEEcCC
Confidence            45678655  9999999999999 9999999998776332   222  3333                  3445555543


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                               ++++++++.+|.|++||+.+++  ....+ ..|...|.+++|+|+++++++++.||.|++||+++++.+..
T Consensus       109 ---------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~  178 (337)
T 1gxr_A          109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             ---------SSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------CCEEEEEcCCCcEEEEECCCCCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence                     7889999999999999999887  33333 57899999999999999999999999999999999999999


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      +..|...+.+++|+|+++++++++  |.|++||+++++.+..+. |...+.+++|+|+++++++++ .|+.|++||+.++
T Consensus       179 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~  256 (337)
T 1gxr_A          179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP  256 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred             eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCC
Confidence            999999999999999999999987  899999999999888775 788999999999999999987 7999999999887


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  312 (612)
                      +..      ....+...+..+.|+     |++++|++++.||.|++||+.+++.+....... .+.+. .++|+++    
T Consensus       257 ~~~------~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~-~~s~~~~----  319 (337)
T 1gxr_A          257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSC-DISVDDK----  319 (337)
T ss_dssp             CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEE-EECTTSC----
T ss_pred             CeE------EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEE-EECCCCC----
Confidence            532      334445556777787     999999999999999999999987764322111 11111 2677777    


Q ss_pred             hhhcccccceecCCC
Q 007234          313 AIFAAKLQDIVKPAS  327 (612)
Q Consensus       313 ~i~~~~~d~~~~~~~  327 (612)
                      .+++++.++.+++|+
T Consensus       320 ~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          320 YIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             EEEEecCCCeEEEEE
Confidence            788888877666554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-32  Score=291.53  Aligned_cols=202  Identities=15%  Similarity=0.149  Sum_probs=162.6

Q ss_pred             cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         4 ~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ..|++  ++|+| ++++||+|+.||+|+|||+.+++..  ..+.+|.+.|.+                  +.|.|.+   
T Consensus       120 ~~V~~--l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~------------------l~f~p~~---  176 (435)
T 4e54_B          120 RRATS--LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG------------------LKFNPLN---  176 (435)
T ss_dssp             SCEEE--EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCE------------------EEECSSC---
T ss_pred             CCEEE--EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEE------------------EEEeCCC---
Confidence            45754  49999 5679999999999999999877643  344456655554                  4444433   


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                           +.+|++|+.||.|++||++++...... ...+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|.
T Consensus       177 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~  250 (435)
T 4e54_B          177 -----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK  250 (435)
T ss_dssp             -----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred             -----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence                 778999999999999999877653222 12344568899999999999999999999999985 56677888999


Q ss_pred             CCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEE---EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ---KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       160 ~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..|.+++|+|++. ++++++  +.|++||+++.+...   ...+|..+|++++|+|+|++|++++ .|+.|++||+.++.
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~  329 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD  329 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence            9999999999986 666776  899999998876433   3367999999999999999999998 79999999999876


Q ss_pred             cc
Q 007234          234 KQ  235 (612)
Q Consensus       234 ~~  235 (612)
                      ..
T Consensus       330 ~~  331 (435)
T 4e54_B          330 CP  331 (435)
T ss_dssp             SE
T ss_pred             cc
Confidence            43

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-31  Score=273.20  Aligned_cols=236  Identities=14%  Similarity=0.182  Sum_probs=200.3

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      ..|.  +++|+|+|.+||+|+.|+.+++|++...      .....+.+|...+.++.|+++                   
T Consensus       107 ~~v~--~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------------  165 (354)
T 2pbi_B          107 TWVM--ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS-------------------  165 (354)
T ss_dssp             SCCC--EEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS-------------------
T ss_pred             CCEE--EEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC-------------------
Confidence            4564  5599999999999999999999998644      233444555554444444443                   


Q ss_pred             cccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                              +..+++|+.||.|++||+.+++.+..+ .+|...|.+++|+|  ++++|++|+.||+|++||+++++++..+
T Consensus       166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence                    778999999999999999999988776 57999999999987  5689999999999999999999999999


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ..|...|.+++|+|++.++++++  ++|++||+++++.+..+..+  ...+.+++|+|+++++++++ .|+.|++||+.+
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~  315 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK  315 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence            99999999999999999999998  89999999999887777544  35789999999999999987 799999999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      ++..     ..+..+...+..+.|+     |+|.+|++++.||.|++|+
T Consensus       316 ~~~~-----~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          316 GSRV-----SILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSEE-----EEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred             CceE-----EEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence            7633     3445566667788887     9999999999999999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=273.63  Aligned_cols=252  Identities=15%  Similarity=0.204  Sum_probs=201.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +..+|+++  +|+|+|++||+|+.|++|+|||..++.  ++..+.+|...+.++.|+++                     
T Consensus        60 h~~~v~~~--~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---------------------  116 (345)
T 3fm0_A           60 HQRTVRKV--AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---------------------  116 (345)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT---------------------
T ss_pred             cCCcEEEE--EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC---------------------
Confidence            45678655  999999999999999999999998774  56778888777776666665                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKF  155 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~  155 (612)
                            +++|++|+.||.|++||+.++..  ......+|...|.+++|+|++++|++|+.|++|++||..+++  +..++
T Consensus       117 ------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~  190 (345)
T 3fm0_A          117 ------GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL  190 (345)
T ss_dssp             ------SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             ------CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence                  88999999999999999987642  223346899999999999999999999999999999998875  45678


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC---------------eeEEEEec-CCCCEEEEEEeeCCcEEEEE
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~---------------~~~~~~~~-h~~~v~~l~~sp~~~~l~s~  217 (612)
                      .+|...|.+++|+|+|++|++++  ++|++||....               +++..+.+ |...|.+++|+|++..++++
T Consensus       191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  270 (345)
T 3fm0_A          191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA  270 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence            89999999999999999999998  89999996321               33455655 88999999999999999998


Q ss_pred             EcCCCeEEEEEcCCCccccc-ee---eEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCcceec
Q 007234          218 AVGERYIALWRTDGVKKQSA-SC---VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      + .|+.|++|+......... ..   ......+...+.++.|+     |++ .+|++++.||.|++|+..+.+.+.
T Consensus       271 ~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          271 C-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             E-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             e-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            8 799999999876542211 01   11123455667788887     877 599999999999999998877654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-32  Score=273.41  Aligned_cols=242  Identities=11%  Similarity=0.124  Sum_probs=189.2

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeeccCCccccccccccccccccccceeEEEee
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~   74 (612)
                      +..+|+++  +|+|++++||+|+.|++|+|||...       .+.+..+.+|...+.++.|+++                
T Consensus        57 h~~~v~~v--~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----------------  118 (330)
T 2hes_X           57 HKKAIRSV--AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----------------  118 (330)
T ss_dssp             CCSCEEEE--EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT----------------
T ss_pred             ccCCEEEE--EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----------------
Confidence            45678655  9999999999999999999999853       3566677777776666666655                


Q ss_pred             ecccccccccCCcEEEEEECCCcEEEEEcCCC----eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-
Q 007234           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-  149 (612)
Q Consensus        75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-  149 (612)
                                 +.+|++|+.||.|++||+...    +++..+ .+|...|.+++|+|++.+|++|+.|++|++||..++ 
T Consensus       119 -----------g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~  186 (330)
T 2hes_X          119 -----------GYYLATCSRDKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD  186 (330)
T ss_dssp             -----------SCEEEEEETTSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred             -----------CCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence                       889999999999999999432    344344 689999999999999999999999999999998776 


Q ss_pred             -ceeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC--------eeEEEEec-CCCCEEEEEEeeCCcEEE
Q 007234          150 -SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       150 -~~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~--------~~~~~~~~-h~~~v~~l~~sp~~~~l~  215 (612)
                       +++..+.+|...|.+++|+|+  +.+|++++  ++|++||+.++        .....+.+ |...|.+++|++++ +++
T Consensus       187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~  265 (330)
T 2hes_X          187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA  265 (330)
T ss_dssp             EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred             eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence             678889999999999999998  77888887  89999998754        34455555 99999999999766 688


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEe--ecCCceeEEeEEecCCccCC--CCcEEEEEecCCcEEEEECCC
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLA--MEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      +++ .|+.|++|+..++...   ....  ..|....+..+.|+     |  ++.+|++++.||.|++||+++
T Consensus       266 s~~-~dg~v~iw~~~~~~~~---~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          266 SVG-ADGVLAVYEEVDGEWK---VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEE-TTSCEEEEEEETTEEE---EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred             EEe-CCCEEEEEEcCCCceE---EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence            887 7999999998876421   1111  23444356777786     6  789999999999999999764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.9e-31  Score=271.11  Aligned_cols=242  Identities=14%  Similarity=0.177  Sum_probs=198.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|.++  +|+|++.++++|+.||+|++||+.+++.+..+.+|...+.++.|+++                       
T Consensus        75 h~~~V~~~--~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-----------------------  129 (343)
T 2xzm_R           75 HNHFVSDL--ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-----------------------  129 (343)
T ss_dssp             CSSCEEEE--EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS-----------------------
T ss_pred             CCCceEEE--EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC-----------------------
Confidence            35677555  99999999999999999999999999999999988887777777766                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCC----------CEEEEEecCCcEEEEECCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~----------~~l~s~s~dg~v~iwd~~~~  149 (612)
                          +.++++|+.||.|++||+...... ...  .+|...|.+++|+|++          .+|++++.|++|++|| ..+
T Consensus       130 ----~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~  203 (343)
T 2xzm_R          130 ----NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNF  203 (343)
T ss_dssp             ----TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTT
T ss_pred             ----CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCC
Confidence                889999999999999999854332 322  3688999999999987          7899999999999999 567


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      +....+.+|...|.+++|+|+|++|++|+  |.|++||+.+ ......+ .+...|.+++|+|++.+++++  .|+.|++
T Consensus       204 ~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~--~d~~v~i  280 (343)
T 2xzm_R          204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG--TDQGVKI  280 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE--ESSCEEE
T ss_pred             ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE--CCCCEEE
Confidence            77888999999999999999999999998  8999999954 4444444 356679999999999877654  4788999


Q ss_pred             EEcCCCccccceeeEeec-----------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          227 WRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      |++.+++..   .+..+.           .+...+..++|+     |+|.+|++|+.||.|++|+++++.
T Consensus       281 w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          281 FNLMTQSKA---PVCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EESSSCCSC---SEEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EEeCCCCCC---ceEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence            999876543   111111           233445677887     999999999999999999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.2e-32  Score=278.18  Aligned_cols=240  Identities=12%  Similarity=0.105  Sum_probs=187.7

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE----eeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE----FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ...|.+  ++|+|++.++ +++.||+|+|||+.+++....    ..+|...+.++.|+++                    
T Consensus        94 ~~~V~~--~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--------------------  150 (357)
T 4g56_B           94 EAGVTD--VAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--------------------  150 (357)
T ss_dssp             SSCEEE--EEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--------------------
T ss_pred             CCCEEE--EEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--------------------
Confidence            345754  4999998654 677899999999998875432    2244444444444444                    


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEEe-
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR-  156 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~-  156 (612)
                             +++|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. .+++++.||+|++||++++++...+. 
T Consensus       151 -------g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~  222 (357)
T 4g56_B          151 -------GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF  222 (357)
T ss_dssp             -------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred             -------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee
Confidence                   789999999999999999999998777 67999999999999875 68999999999999999998776654 


Q ss_pred             -cCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc-EEEEEEcCCCeEEEEEcCC
Q 007234          157 -ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       157 -~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~  231 (612)
                       .+...+.+++|+|++ .++++|+  +.|++||+++++.+..+.+|...|++++|+|++. +|++++ .|++|++||+++
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~  301 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADF  301 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTS
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCC
Confidence             355689999999974 6787776  8999999999999999999999999999999874 677776 799999999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECCCcc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      ++..     ..+.| ...+..++|+     | ++.+|++++.||+|++|++.+..
T Consensus       302 ~~~~-----~~~~H-~~~V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          302 SEVF-----RDLSH-RDFVTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CEEE-----EECCC-SSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECC---
T ss_pred             CcEe-----EECCC-CCCEEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCCC
Confidence            7633     33444 4456777887     7 78999999999999999986543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-31  Score=277.64  Aligned_cols=245  Identities=17%  Similarity=0.224  Sum_probs=203.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEeeccCCccccccccccccccccccceeEEEee
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~   74 (612)
                      +...|..+  +|+|+|++||+|+.|+.+++||+.+..       ....+.+|.+.+.++.|.++                
T Consensus       107 h~~~v~~~--~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----------------  168 (380)
T 3iz6_a          107 HCPWVMEC--AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD----------------  168 (380)
T ss_dssp             CCTTCCCC--EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----------------
T ss_pred             CCCCEEEE--EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC----------------
Confidence            34567555  999999999999999999999987542       23345556655555555443                


Q ss_pred             ecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec----cCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECC-C
Q 007234           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-T  148 (612)
Q Consensus        75 ~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~-~  148 (612)
                        +        +..+++|+.||.|++||+.+++.+..+.    .+|...|.+++|++ ++++|++|+.|++|++||++ .
T Consensus       169 --~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          169 --Q--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             --S--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             --C--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence              2        4569999999999999999999876552    57999999999987 88999999999999999998 5


Q ss_pred             CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCC-------CEEEEEEeeCCcEEEEEEc
Q 007234          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~l~s~s~  219 (612)
                      ++.+..+.+|...|.+++|+|++++|++++  |+|++||+++++.+..+..+..       .|.+++|+|+|+++++++ 
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-  317 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-  317 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-
T ss_pred             CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-
Confidence            578889999999999999999999999998  8999999999999888865432       488999999999999987 


Q ss_pred             CCCeEEEEEcCCCccccceeeEee----cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          220 GERYIALWRTDGVKKQSASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .||.|++||+..++..     ..+    ..+...+.++.|+     |+|.+|++|+.||+|++|++...+
T Consensus       318 ~dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          318 SNGDCYVWDTLLAEMV-----LNLGTLQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             TTSCEEEEETTTCCEE-----EEECCSCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCCEEEEECCCCceE-----EEEecccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence            7999999999887643     222    3455567788887     999999999999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-32  Score=275.44  Aligned_cols=246  Identities=15%  Similarity=0.176  Sum_probs=195.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |..+|+++  +|+|+|++||+|+.|++|+|||+.++.  .+..+.+|...|.++.|+++                 .+  
T Consensus        12 H~~~V~~v--~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~-----------------~~--   70 (316)
T 3bg1_A           12 HEDMIHDA--QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP-----------------MY--   70 (316)
T ss_dssp             --CCEEEE--EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG-----------------GG--
T ss_pred             ccCeEEEe--eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC-----------------CC--
Confidence            46788655  999999999999999999999998875  46678877776665555432                 11  


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCce---e
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---L  152 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~~---~  152 (612)
                            +.+|++|+.||+|++||+.++.  ....+ .+|...|++++|+|+  +.+|++|+.|++|++||+..+..   .
T Consensus        71 ------~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           71 ------GNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             ------SSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             ------CCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence                  6789999999999999999874  34344 679999999999997  78999999999999999987632   3


Q ss_pred             EEEecCCCCeeEEEECCC-----------------CCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCCEEEEEEeeC
Q 007234          153 GKFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN  210 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spd-----------------g~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~  210 (612)
                      ..+.+|...+.+++|+|+                 +++|++|+  +.|++||++.+   +++..+.+|...|.+++|+|+
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence            445678889999999997                 46888887  89999999765   467788999999999999998


Q ss_pred             C----cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          211 G----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       211 ~----~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      +    .+|++++ .|++|++|++.+........ ..+..+...+..+.|+     |++.+|++++.||.|++|+..
T Consensus       224 ~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~-~~~~~~~~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          224 IGLPTSTIASCS-QDGRVFIWTCDDASSNTWSP-KLLHKFNDVVWHVSWS-----ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBC-CEEEECSSCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCceEEEEc-CCCeEEEEEccCccccchhh-hhhhcCCCcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence            6    7889887 79999999998632110001 1112234455677787     999999999999999999965

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=262.00  Aligned_cols=270  Identities=15%  Similarity=0.226  Sum_probs=216.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--cCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ++|||++ +||+|. |++|+|||+.+|++++.+..  |...|.++.|+++                           +++
T Consensus        31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~---------------------------~~~   81 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---------------------------GNY   81 (318)
T ss_dssp             EEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---------------------------SSE
T ss_pred             EEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC---------------------------CCE
Confidence            5999987 777765 99999999999999887763  3333444444444                           889


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCCCeeEEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAV  167 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~  167 (612)
                      +++|+.||.|++||+.+++.+..+ .+|...+.++.+  ++..+++++.++.+++|+...+ ..+..+.+|...+.++.+
T Consensus        82 l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           82 LAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            999999999999999999998776 579988887655  5678999999999999998766 456778889999999999


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCCcEEE--EEEcCCCeEEEEEcCCCcccccee
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~--s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +++++++++++  |.|++||+++++.    ......|.+.|.++.++|++..++  .+++.++.|++||.......    
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----  234 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----  234 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----
Confidence            99999999988  8999999987653    455677889999999999776443  23446899999999887643    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                       ....+... +....+.     +++..+++++  .||.|++||+.+++.+.                             
T Consensus       235 -~~~~~~~~-v~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~-----------------------------  278 (318)
T 4ggc_A          235 -SAVDAHSQ-VCSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA-----------------------------  278 (318)
T ss_dssp             -EEEECSSC-EEEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-----------------------------
T ss_pred             -ccccceee-eeeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE-----------------------------
Confidence             23333333 3445565     7777777665  79999999987765432                             


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                ++.+|.+.|.+++|+|||++| +|||.|+++++|++
T Consensus       279 --------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          279 --------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRC  313 (318)
T ss_dssp             --------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECC
T ss_pred             --------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEEC
Confidence                                      455788899999999999999 99999999999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=281.28  Aligned_cols=246  Identities=13%  Similarity=0.176  Sum_probs=205.3

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC----CcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      .++|+++  +|+|++++||+|+.||.|++||+.+    .+.+..+.+|...+.++.|++                  .+ 
T Consensus        67 ~~~v~~~--~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------------~~-  125 (416)
T 2pm9_A           67 DSKFNDL--DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA------------------KQ-  125 (416)
T ss_dssp             SSCEEEE--EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS------------------SS-
T ss_pred             CCceEEE--EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC------------------CC-
Confidence            4567545  9999999999999999999999987    457777777766655555444                  32 


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCe------EEEEe--ccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCC
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRL--SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~------~~~~~--~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~  149 (612)
                             +.++++|+.||.|++||+.+++      ....+  ..+|...|.+++|+|+ +..|++++.||.|++||++++
T Consensus       126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  198 (416)
T 2pm9_A          126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK  198 (416)
T ss_dssp             -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred             -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence                   5789999999999999999886      32222  3568999999999998 789999999999999999999


Q ss_pred             ceeEEEecC------CCCeeEEEECCCC-CEEEEeC--C---eEEEEEcCCC-eeEEEEe-cCCCCEEEEEEee-CCcEE
Q 007234          150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV  214 (612)
Q Consensus       150 ~~~~~~~~~------~~~v~~l~~spdg-~~l~~~~--g---~i~lwd~~~~-~~~~~~~-~h~~~v~~l~~sp-~~~~l  214 (612)
                      +.+..+..+      ...+.+++|+|++ .++++++  +   .|++||++++ +++..+. +|...|.+++|+| ++++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred             CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence            999998876      6789999999997 5788777  5   9999999986 6777788 8999999999999 89999


Q ss_pred             EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEECCCccee
Q 007234          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      ++++ .|+.|++||+.+++..     ..+..+...+..+.|+     |++ .+|++++.||.|++||+.++...
T Consensus       279 ~s~~-~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          279 LSSG-RDNTVLLWNPESAEQL-----SQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEE-SSSEEEEECSSSCCEE-----EEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             EEEe-CCCCEEEeeCCCCccc-----eeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            9987 7999999999987633     4455555566777887     888 89999999999999999877643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-30  Score=261.46  Aligned_cols=240  Identities=21%  Similarity=0.343  Sum_probs=204.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|..+  +|+|++++|++|+.||.|++||+.+++++..+.+|...+.++.|+++                       
T Consensus        64 h~~~v~~~--~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  118 (312)
T 4ery_A           64 HKLGISDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-----------------------  118 (312)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred             CCCceEEE--EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-----------------------
Confidence            34567555  99999999999999999999999999999999888776666666555                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-CCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~  160 (612)
                          +.++++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+.+++.+..+.. +..
T Consensus       119 ----~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  193 (312)
T 4ery_A          119 ----SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP  193 (312)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC
T ss_pred             ----CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC
Confidence                789999999999999999999988776 57999999999999999999999999999999999998887654 456


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEE--EEEe-eCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~--l~~s-p~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .+.+++|+|+++++++++  |.|++||+++++.+..+.+|...+.+  ..++ +++.++++++ .|+.|++||+.+++. 
T Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~-  271 (312)
T 4ery_A          194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI-  271 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE-
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh-
Confidence            899999999999999988  89999999999999999988765433  2344 6778888876 799999999988763 


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECC
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ  282 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~  282 (612)
                          +..+..+...+..+.++     |++.++++++  .||.|++|+.+
T Consensus       272 ----~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          272 ----VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ----EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred             ----hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence                34555555666677787     9999999997  59999999854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.8e-31  Score=300.24  Aligned_cols=244  Identities=14%  Similarity=0.136  Sum_probs=207.6

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.++|+++  +|+|+|++||+|+.||.|+|||+.+++.+..+.+|.+.+.++.|+++                       
T Consensus        54 ~~~~v~~~--~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------  108 (814)
T 3mkq_A           54 TETPVRAG--KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-----------------------  108 (814)
T ss_dssp             CSSCEEEE--EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred             CCCcEEEE--EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC-----------------------
Confidence            45678655  99999999999999999999999999999999888777776666665                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecCC-
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-  159 (612)
                          +.++++|+.||.|++||+.++........+|...|.+++|+| ++..|++++.||+|++||+.+++....+..+. 
T Consensus       109 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~  184 (814)
T 3mkq_A          109 ----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE  184 (814)
T ss_dssp             ----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred             ----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence                788999999999999999988444445568999999999999 88899999999999999999988888877665 


Q ss_pred             CCeeEEEECC--CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          160 KGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       160 ~~v~~l~~sp--dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ..+.+++|+|  ++.++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .||.|++||+.+++..
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEE
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEE
Confidence            7899999999  999999998  8999999999999999999999999999999999999987 7999999999987643


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcE-EEEEecCCcEEEEECCCcc
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~t~s~dg~i~iwd~~~~~  285 (612)
                           ..+..+...+..+.++     |++.. +++++.++.+.+|++....
T Consensus       264 -----~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          264 -----KTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             -----EEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             -----EEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCC
Confidence                 4444455566677776     88763 3555557778889876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-30  Score=274.23  Aligned_cols=272  Identities=15%  Similarity=0.222  Sum_probs=222.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      ++++|+++|++|+.||.|++||+.+++....+.+|.+.+.++.|  +                           +.++++
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~---------------------------~~~l~s  188 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D---------------------------ERVIIT  188 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C---------------------------SSEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C---------------------------CCEEEE
Confidence            55569999999999999999999999999999877765554433  2                           678999


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee---EEEecCCCCeeEEEEC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS  168 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~~v~~l~~s  168 (612)
                      |+.||.|++||+.+++.+..+ .+|...|.+++|++  ..+++|+.||.|++||+.+++..   ..+.+|...|.+++| 
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            999999999999999998777 57999999999974  58999999999999999988765   667888999999999 


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                       +++++++|+  |.|++||+++++.+..+.+|...|.++.|+  +.++++++ .|+.|++||+.+++.     +..+..+
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h  335 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH  335 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence             688999887  899999999999999999999999999984  67889887 799999999998763     3445555


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~  326 (612)
                      ...+.++.+       ++.+|++|+.||.|++||+.++.....               +.+                   
T Consensus       336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~---------------~~~-------------------  374 (435)
T 1p22_A          336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRA---------------PAG-------------------  374 (435)
T ss_dssp             SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTS---------------CTT-------------------
T ss_pred             cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCccc---------------ccc-------------------
Confidence            555555554       578999999999999999866542110               000                   


Q ss_pred             CceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                  ......+..|...|.+++|  ||.+| ++++.|+++++|++.+
T Consensus       375 ------------~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          375 ------------TLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN  414 (435)
T ss_dssp             ------------TTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred             ------------chheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence                        0122356678889999998  88899 9999999999999854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6e-31  Score=276.04  Aligned_cols=236  Identities=14%  Similarity=0.143  Sum_probs=199.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ..|+|+|++||+|+.||.|++||+.+++....+.+|...+.++.|+++                           +.+++
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------~~~l~  155 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---------------------------GEALI  155 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---------------------------SSEEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC---------------------------CCEEE
Confidence            478999999999999999999999999998888777777666666655                           78999


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC---CCCee----
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS----  163 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~v~----  163 (612)
                      +|+.||.|++||+.+++.+..+ .+|...|++++|+|+++.|++++.|++|++||+++++.+..+..+   ...+.    
T Consensus       156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            9999999999999999888666 579999999999999999999999999999999999999988753   23444    


Q ss_pred             -----------------EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCc-EEEEEEcCCC
Q 007234          164 -----------------CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER  222 (612)
Q Consensus       164 -----------------~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~-~l~s~s~~d~  222 (612)
                                       +++|+|+++++++++  |.|++||+++++.+..+. +|...|.+++|+|++. ++++++ .|+
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg  313 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG  313 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence                             455578999999988  899999999998877764 5889999999999999 888887 799


Q ss_pred             eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      .|++||+.+++..   ......++...+..+.+      +++.+|++++.||.|++|++...
T Consensus       314 ~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          314 MLAQWDLRSPECP---VGEFLINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEEEETTCTTSC---SEEEEESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred             eEEEEEcCCCcCc---hhhhhccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence            9999999987542   11222345566666766      56789999999999999998774

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-31  Score=276.22  Aligned_cols=276  Identities=11%  Similarity=0.130  Sum_probs=228.4

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .++|.++  +|+|+|++|++|+.||.|++|| .+++.+..+..|...+.++.|+++                        
T Consensus       108 ~~~v~~~--~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~------------------------  160 (425)
T 1r5m_A          108 TNQVTCL--AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD------------------------  160 (425)
T ss_dssp             CBCEEEE--EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT------------------------
T ss_pred             CCceEEE--EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC------------------------
Confidence            4477555  9999999999999999999999 678888888877776666655555                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC---------------eEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~---------------V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                         +.++++++.+|.|++||+.+++.+..+ ..|...               +.+++|+|++ .+++++.||.|++||+.
T Consensus       161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          161 ---GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT  235 (425)
T ss_dssp             ---SSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred             ---CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence               788999999999999999999988776 345555               9999999975 58899999999999999


Q ss_pred             CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      +++.+..+..|...|.+++|+|+++++++++  |.|++||+++++.+..+.+|...|.+++|+|++ ++++++ .|+.|+
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~  313 (425)
T 1r5m_A          236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR  313 (425)
T ss_dssp             CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred             CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence            9999999999999999999999999999988  899999999999999999999999999999999 888887 799999


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc--------------------
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--------------------  285 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~--------------------  285 (612)
                      +||+.+++..     ..+..+...+..+.|+     |++.+|++++.||.|++||+.+++                    
T Consensus       314 i~d~~~~~~~-----~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (425)
T 1r5m_A          314 LWSLKQNTLL-----ALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP  383 (425)
T ss_dssp             EEETTTTEEE-----EEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred             EEECCCCcEe-----EecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence            9999887633     3444555566777887     999999999999999999998887                    


Q ss_pred             eecccCCcee--EeecccccCCCCcccchhhhcccccceecCCC
Q 007234          286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (612)
Q Consensus       286 ~~~~~~~~~~--~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~  327 (612)
                      .+........  .+.+.. ++|+++    .+++++.++.+++|+
T Consensus       384 ~~~~~~~~~~~~~v~~~~-~s~~~~----~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          384 LYASYQSSQDNDYIFDLS-WNCAGN----KISVAYSLQEGSVVA  422 (425)
T ss_dssp             EEEEECCTTCCCCEEEEE-ECTTSS----EEEEEESSSCCEEEE
T ss_pred             hhhhhcCcccCCceEEEE-ccCCCc----eEEEEecCceEEEEe
Confidence            5555544422  333222 677777    777888877666544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.2e-30  Score=265.04  Aligned_cols=252  Identities=15%  Similarity=0.219  Sum_probs=203.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeeccCCccccccccccccccccccceeEEEeeec-
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~-   76 (612)
                      |.++|+++  +|+|+|++||+|+.||.|+|||+.++    +....+.+|...+.                  ++.|.+. 
T Consensus        10 H~~~v~~~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~------------------~~~~~~~~   69 (351)
T 3f3f_A           10 HDDLVHDV--VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV------------------AIDWASPE   69 (351)
T ss_dssp             CSSCEEEE--EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE------------------EEEECCGG
T ss_pred             cccceeEE--EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE------------------EEEEcCCC
Confidence            56788655  99999999999999999999999877    45666666665555                  4455443 


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCC---------eEEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEE
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEID  145 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd  145 (612)
                      +        +.++++|+.||.|++||+.++         +.+..+ .+|...|.+++|+|+  +++|++++.||.|++||
T Consensus        70 d--------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           70 Y--------GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             G--------CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred             C--------CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence            2        678999999999999999987         344444 579999999999999  99999999999999999


Q ss_pred             CCCCceeEEEe-------------cCCCCeeEEEECCC---CCEEEEeC--CeEEEEEcCCCee--EEEEecCCCCEEEE
Q 007234          146 PLTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFM  205 (612)
Q Consensus       146 ~~~~~~~~~~~-------------~~~~~v~~l~~spd---g~~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l  205 (612)
                      +++++.+..+.             .+...+.+++|+|+   +.++++++  +.+.+|+...++.  +..+.+|...|.++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  220 (351)
T 3f3f_A          141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI  220 (351)
T ss_dssp             CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred             CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence            99887654433             46678999999997   88998887  7787777777764  77788999999999


Q ss_pred             EEeeCC----cEEEEEEcCCCeEEEEEcCCCccc-----------------------------------------cceee
Q 007234          206 TFSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCV  240 (612)
Q Consensus       206 ~~sp~~----~~l~s~s~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~  240 (612)
                      +|+|++    ++|++++ .|+.|++||+..+...                                         ....+
T Consensus       221 ~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (351)
T 3f3f_A          221 SWAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL  299 (351)
T ss_dssp             EECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred             EECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence            999998    7888887 7999999999864211                                         01234


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      ..+..+...+..+.|+     |++++|++++.||.|++|++.+++.+.
T Consensus       300 ~~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          300 SEHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             EEECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             EEEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchh
Confidence            4455566667788887     999999999999999999999876654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.1e-31  Score=268.31  Aligned_cols=277  Identities=14%  Similarity=0.129  Sum_probs=218.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      +.++|.++  +|+|++++|++++.||.|+|||+.++.   ....+..|...+                  .++.|.+.  
T Consensus        10 h~~~v~~~--~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~--   67 (342)
T 1yfq_A           10 PKDYISDI--KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL------------------LCCNFIDN--   67 (342)
T ss_dssp             CSSCEEEE--EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCE------------------EEEEEEES--
T ss_pred             CCCcEEEE--EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCce------------------EEEEECCC--
Confidence            46778555  999999999999999999999998887   233344454444                  45555543  


Q ss_pred             ccccccCCc-EEEEEECCCcEEEEEc-CCCeEEEEeccC--CCCCeEEEEEecCCCEEEEEecCCcEEEEECCC------
Q 007234           79 KKKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------  148 (612)
Q Consensus        79 ~~~~~~~~~-~l~~gs~~g~I~vwd~-~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~------  148 (612)
                             +. ++++|+.+|.|++||+ .+++.  ....+  |...|.+++|+| ++.|++++.|+.|++||+++      
T Consensus        68 -------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  137 (342)
T 1yfq_A           68 -------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             -------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             -------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence                   78 8999999999999999 88866  33357  999999999999 99999999999999999987      


Q ss_pred             ---CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC-Ce--eEEEEecCCCCEEEEEEee-CCcEEEEEEc
Q 007234          149 ---GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HK--KMQKFSGHPGAVRFMTFSD-NGKYVLSSAV  219 (612)
Q Consensus       149 ---~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~-~~--~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~  219 (612)
                         ++++..+. +...+.+++|+|++  +++++  +.|++||+++ +.  .......|...|.+++|+| +++++++++ 
T Consensus       138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-  213 (342)
T 1yfq_A          138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-  213 (342)
T ss_dssp             EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred             cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence               77666666 78899999999988  55555  8999999998 54  3345567889999999999 999999988 


Q ss_pred             CCCeEEEEEcCCC--ccccceeeEeecCCc---------eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          220 GERYIALWRTDGV--KKQSASCVLAMEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       220 ~d~~i~vwd~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .|+.|++|+++..  ... ......+..+.         ..+..+.|+     |++++|++++.||.|++||+.+++.+.
T Consensus       214 ~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTSEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhHhh
Confidence            7999999999876  100 00122333332         266778887     999999999999999999987765532


Q ss_pred             ccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeecc-CCCeEEEEecCCCceEecc
Q 007234          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMS  367 (612)
Q Consensus       289 ~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~l~~S~dg~~l~~s  367 (612)
                                                                             .+..| ...|.+++  |||.+| ++
T Consensus       288 -------------------------------------------------------~~~~~h~~~v~~~~--~~~~~l-~s  309 (342)
T 1yfq_A          288 -------------------------------------------------------NFAKFNEDSVVKIA--CSDNIL-CL  309 (342)
T ss_dssp             -------------------------------------------------------ECCCCSSSEEEEEE--ECSSEE-EE
T ss_pred             -------------------------------------------------------hhhcccCCCceEec--CCCCeE-EE
Confidence                                                                   22344 55788888  999999 99


Q ss_pred             ccceee-eccee
Q 007234          368 QSLLKS-KRGRY  378 (612)
Q Consensus       368 ~s~d~~-~~~w~  378 (612)
                      ++.|+. .+.++
T Consensus       310 ~s~Dg~~~~~~~  321 (342)
T 1yfq_A          310 ATSDDTFKTNAA  321 (342)
T ss_dssp             EEECTHHHHCSS
T ss_pred             EecCCccccccc
Confidence            999998 66665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.9e-30  Score=267.55  Aligned_cols=250  Identities=16%  Similarity=0.201  Sum_probs=204.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |.++|+++  +|+|+|++||+|+.||.|+|||+.  +++.+..+.+|...+.++.|+++                  .. 
T Consensus        10 h~~~v~~~--~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------~~-   68 (379)
T 3jrp_A           10 HNELIHDA--VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------KF-   68 (379)
T ss_dssp             CCCCEEEE--EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG------------------GG-
T ss_pred             CcccEEEE--EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCC------------------CC-
Confidence            56788655  999999999999999999999998  56677777777665554444432                  11 


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~  153 (612)
                            +.++++|+.||.|++||+.+++  ....+ ..|...|.+++|+|+  +.+|++++.|+.|++||+..+.  ...
T Consensus        69 ------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           69 ------GTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             ------CSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             ------CCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence                  6789999999999999999987  44444 579999999999999  9999999999999999998873  445


Q ss_pred             EEecCCCCeeEEEECC-------------CCCEEEEeC--CeEEEEEcCCCe----eEEEEecCCCCEEEEEEeeC---C
Q 007234          154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---G  211 (612)
Q Consensus       154 ~~~~~~~~v~~l~~sp-------------dg~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~---~  211 (612)
                      .+..|...|.+++|+|             ++.++++++  |.|++||+++++    ....+.+|..+|.+++|+|+   +
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            6778889999999999             699999987  899999998764    45678899999999999999   8


Q ss_pred             cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .+|++++ .|+.|++||+.++.............+...+..+.|+     |++.+|++++.||.|++|++....
T Consensus       222 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          222 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence            8999987 7999999999987533111222222355566778887     999999999999999999987543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=3.1e-30  Score=269.40  Aligned_cols=247  Identities=13%  Similarity=0.213  Sum_probs=203.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ..+|.++  +|+|+|++|++|+.||.|++||+.+++.+..+.+|...+.                  ++.|.        
T Consensus       134 ~~~v~~v--~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~------------------~~~~~--------  185 (401)
T 4aez_A          134 STYVASV--KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG------------------CLSWN--------  185 (401)
T ss_dssp             TCCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE------------------EEEEE--------
T ss_pred             CCCEEEE--EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE------------------EEEEC--------
Confidence            5677555  9999999999999999999999999999998876655443                  55551        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (612)
                         +.++++|+.+|.|++||+...........+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|
T Consensus       186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  262 (401)
T 4aez_A          186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV  262 (401)
T ss_dssp             ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred             ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence               67899999999999999995443333446799999999999999999999999999999999999999999999999


Q ss_pred             eEEEECCCCC-EEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE-cCCCeEEEEEcCCCcccc
Q 007234          163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS  236 (612)
Q Consensus       163 ~~l~~spdg~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~~d~~i~vwd~~~~~~~~  236 (612)
                      .+++|+|++. ++++++    +.|++||+.+++.+..+. |...|.+++|+|+++++++++ ..|+.|++|++.++... 
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-  340 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-  340 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence            9999999764 555542    899999999999998886 677899999999999998853 36999999999887543 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                        ....+..+...+..+.|+     |++.+|++++.||.|++|++.+++.+..
T Consensus       341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC------
T ss_pred             --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence              334444555566677787     9999999999999999999998877653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=3.1e-30  Score=257.90  Aligned_cols=235  Identities=14%  Similarity=0.162  Sum_probs=188.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCC--eEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCc--eeEEEecCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~  159 (612)
                      +++|++|+.||.|+|||+..+  +.+..+ .+|.+.|++++|+|  ++++|++|+.|++|++||+.+++  .+..+..|.
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~   99 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS   99 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence            889999999999999999754  445444 68999999999986  48899999999999999998874  566788899


Q ss_pred             CCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeC-------------CcEEEEEEcC
Q 007234          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN-------------GKYVLSSAVG  220 (612)
Q Consensus       160 ~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~-------------~~~l~s~s~~  220 (612)
                      ..|.+++|+|+  |.+|++++  +.|++||++++.  ....+.+|...|.+++|+|+             +++|++++ .
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~  178 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  178 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-T
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-C
Confidence            99999999997  88999888  899999998763  24567899999999999997             46888887 7


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC---CcEEEEEecCCcEEEEECCCcceecccCCceeEe
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (612)
                      |+.|++||++++... ......+..+...+..+.|+     |+   +.+|++++.||+|++||+.+.....     ....
T Consensus       179 D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~iWd~~~~~~~~-----~~~~  247 (297)
T 2pm7_B          179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCIIWTQDNEQGPW-----KKTL  247 (297)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEEE
T ss_pred             CCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEEEEeCCCCCcc-----ceee
Confidence            999999999876532 11234555566677888887     77   4899999999999999976532100     0000


Q ss_pred             ecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecce
Q 007234          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (612)
Q Consensus       298 ~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w  377 (612)
                      .                                             ....|...|.+++|+|||++| ++++.|+++++|
T Consensus       248 ~---------------------------------------------~~~~~~~~v~~~~~s~~g~~l-as~~~D~~v~lw  281 (297)
T 2pm7_B          248 L---------------------------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  281 (297)
T ss_dssp             S---------------------------------------------SSSCCSSCEEEEEECSSSCCE-EEEETTSCEEEE
T ss_pred             e---------------------------------------------ecccCCCcEEEEEECCCCCEE-EEEcCCCcEEEE
Confidence            0                                             001345579999999999999 999999999999


Q ss_pred             ee
Q 007234          378 YV  379 (612)
Q Consensus       378 ~~  379 (612)
                      +.
T Consensus       282 ~~  283 (297)
T 2pm7_B          282 KE  283 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3e-30  Score=269.53  Aligned_cols=280  Identities=14%  Similarity=0.177  Sum_probs=217.9

Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           11 TSFSPALDYFA-ICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        11 ~~fspdg~~la-s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      ++++|+...++ +++.||.|+|||+.+..    ....+.+|.+.+                  .++.|.+.+        
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V------------------~~~~~~p~~--------   93 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPV------------------LDIAWCPHN--------   93 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCE------------------EEEEECTTC--------
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCE------------------EEEEeCCCC--------
Confidence            48888876444 57889999999996542    223344454444                  455555432        


Q ss_pred             CcEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEE--
Q 007234           86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF--  155 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~-------~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~--  155 (612)
                      +.++++|+.||.|++||+.++       +.+..+ .+|...|++++|+|++ ..|++++.||.|++||+.+++.+..+  
T Consensus        94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            789999999999999999987       444444 5799999999999998 69999999999999999999999999  


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCC-EEEEEEeeCCcEEEEEE--cCCCeEEEEEc
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT  229 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~l~s~s--~~d~~i~vwd~  229 (612)
                      ..|...|.+++|+|++++|++++  |.|++||+++++.+..+ .+|.+. +.++.|+|++.+++++.  +.|+.|++||+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            78899999999999999999987  89999999999999998 788876 89999999999888872  26999999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE-EecCCcEEEEECCCcce-ecccCCceeEeecccccCCCC
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ  307 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~s~~~  307 (612)
                      .+.+...  ......+... +..+.|+     |++.+|++ ++.||.|++||+.+++. +..                  
T Consensus       253 ~~~~~~~--~~~~~~~~~~-v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------  306 (402)
T 2aq5_A          253 KHLEEPL--SLQELDTSSG-VLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------  306 (402)
T ss_dssp             TBCSSCS--EEEECCCCSS-CEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred             ccccCCc--eEEeccCCCc-eeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence            8876421  2233334433 4556776     89998875 45799999999876542 100                  


Q ss_pred             cccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                                        +.... |...|.+++|+|||.++ +++  ++.+++|++..
T Consensus       307 ----------------------------------l~~~~-~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~  342 (402)
T 2aq5_A          307 ----------------------------------LSMFS-SKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE  342 (402)
T ss_dssp             ----------------------------------EEEEC-CSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred             ----------------------------------ecccc-cCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence                                              00111 44579999999999998 654  55899999854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.3e-30  Score=267.48  Aligned_cols=243  Identities=11%  Similarity=0.184  Sum_probs=203.4

Q ss_pred             cccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         4 ~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      ..|.  +++|+|+    |++|++|+.||.|++||+.+++.+..+.+|...+.++.|++                  .+  
T Consensus        70 ~~v~--~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------------------~~--  127 (366)
T 3k26_A           70 ENFY--TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP------------------RD--  127 (366)
T ss_dssp             CCEE--EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS------------------SC--
T ss_pred             CcEE--EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC------------------CC--
Confidence            5574  4599999    67999999999999999999999999987777666555554                  22  


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                            +.++++|+.||.|++||+.+++.+..+.  .+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus       128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence                  7899999999999999999999887663  57999999999999999999999999999999998765444333


Q ss_pred             ----------------------------CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--------------eEE
Q 007234          158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--------------KMQ  193 (612)
Q Consensus       158 ----------------------------~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--------------~~~  193 (612)
                                                  |...|.+++|+  ++++++++  |.|++||+.+++              .+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                        88899999998  77888887  899999998764              378


Q ss_pred             EEecCCCCEEEEEEeeC--CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEE
Q 007234          194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA  269 (612)
Q Consensus       194 ~~~~h~~~v~~l~~sp~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t  269 (612)
                      .+.+|...|.+++|+|+  +++|++++ .||.|++||+.+++... .....+..+  ...+..+.|+     |++++|++
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s  352 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFS-----RDSSILIA  352 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence            88999999999999999  99999987 79999999999886542 122334433  5667788887     99999999


Q ss_pred             EecCCcEEEEECCC
Q 007234          270 ISETGVCYIWYGQN  283 (612)
Q Consensus       270 ~s~dg~i~iwd~~~  283 (612)
                      ++.||.|++||+.+
T Consensus       353 ~~~dg~i~iwd~~~  366 (366)
T 3k26_A          353 VCDDASIWRWDRLR  366 (366)
T ss_dssp             EETTSEEEEEEC--
T ss_pred             EeCCCEEEEEEecC
Confidence            99999999999753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=258.54  Aligned_cols=280  Identities=13%  Similarity=0.104  Sum_probs=218.3

Q ss_pred             CCcccceeEEEEcCC---CCEEEEEeCCCcEEEEECCC-CcEE-EEeeccCCccccccccccccccccccceeEEEeeec
Q 007234            2 GSSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspd---g~~las~s~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      +.++|+++  +|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+|...+.++.|+++                  
T Consensus        38 h~~~v~~~--~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------   97 (368)
T 3mmy_A           38 PDDSIGCL--SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD------------------   97 (368)
T ss_dssp             CSSCEEEE--EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT------------------
T ss_pred             CCCceEEE--EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC------------------
Confidence            46788555  99999   69999999999999999997 5554 677777776666666555                  


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEE--ecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                               +.+|++|+.||.|++||+.+++.+..  .+|...|++++|  +|++++|++++.||.|++||+++++.+..
T Consensus        98 ---------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           98 ---------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             ---------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             ---------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence                     88999999999999999999998753  469999999999  88999999999999999999999999999


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcE----EEEEEcCCCeEEE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIAL  226 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~----l~s~s~~d~~i~v  226 (612)
                      +..+. .+.++.+.++  .+++++  +.+++|+++........  ..+...+.++.+.++...    +++++ .|+.|++
T Consensus       167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i  242 (368)
T 3mmy_A          167 LQLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI  242 (368)
T ss_dssp             EECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred             EecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence            88654 5677777654  444443  89999999876543322  234456777777766554    88877 7999999


Q ss_pred             EEcCCCccccceeeEeecCCce------------eEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce
Q 007234          227 WRTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK  294 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~  294 (612)
                      |++.......  ....+..+..            .+..+.|+     |++++|++++.||.|++||+.+++.+.      
T Consensus       243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------  309 (368)
T 3mmy_A          243 HYINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------  309 (368)
T ss_dssp             EESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE------
T ss_pred             EecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE------
Confidence            9998874311  2233333332            46778887     999999999999999999987765432      


Q ss_pred             eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeee
Q 007234          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (612)
Q Consensus       295 ~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~  374 (612)
                                                                       .+..|...|.+++|+|||++| ++++.|+..
T Consensus       310 -------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~  339 (368)
T 3mmy_A          310 -------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWS  339 (368)
T ss_dssp             -------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCST
T ss_pred             -------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEeccccc
Confidence                                                             233566689999999999999 999888877


Q ss_pred             cceee
Q 007234          375 RGRYV  379 (612)
Q Consensus       375 ~~w~~  379 (612)
                      +.|++
T Consensus       340 ~~~~~  344 (368)
T 3mmy_A          340 KGHEF  344 (368)
T ss_dssp             TCGGG
T ss_pred             ccccc
Confidence            66654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=2.2e-29  Score=282.15  Aligned_cols=241  Identities=17%  Similarity=0.224  Sum_probs=201.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+..|+++  +|+|+|++|++|+.||+|+|||+.+++....+.+|...+.++.|+++                       
T Consensus       429 h~~~v~~v--~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  483 (694)
T 3dm0_A          429 HSHFVEDV--VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD-----------------------  483 (694)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred             CCCcEEEE--EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC-----------------------
Confidence            45677555  99999999999999999999999999999999988888777777766                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEe--ccCCCCCeEEEEEecCC--CEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~--~~~h~~~V~~l~~sp~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                          +.++++|+.||.|++||..........  ..+|...|.+++|+|++  ..+++|+.|++|++||+.+++....+.+
T Consensus       484 ----~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~  559 (694)
T 3dm0_A          484 ----NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG  559 (694)
T ss_dssp             ----SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ----CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence                788999999999999998765443222  24688999999999986  5799999999999999999999999999


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      |...|++++|+|+|++|++++  |.|++||+++++.+..+. +...|.+++|+|++.++++++  ++.|++||+.++...
T Consensus       560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV  636 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence            999999999999999999998  899999999999888776 456899999999998877654  677999999987643


Q ss_pred             cceeeEeec-----------------CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          236 SASCVLAME-----------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       236 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .   .+...                 .....+..+.|+     |+|++|++|+.||.|++|++.
T Consensus       637 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          637 E---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             E---EECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred             h---hhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence            1   11100                 011124566777     999999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-30  Score=270.89  Aligned_cols=295  Identities=9%  Similarity=-0.015  Sum_probs=223.0

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccccc---------------c-cccccce
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE---------------R-EHLSVDY   68 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~---------------~-~~~~~~~   68 (612)
                      -|.++  +|||||+++|+++.|++|+  |...++.+   ++|...+..+.|+|+-.               . ++ ...+
T Consensus        17 ~v~sv--~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V   88 (588)
T 2j04_A           17 WKNNL--TWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYP   88 (588)
T ss_dssp             SSCCE--EECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCE
T ss_pred             cEEEE--EECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcE
Confidence            45445  9999999999999999999  76666544   78999999988876510               0 12 4457


Q ss_pred             eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC-----CeEEEEEecCCCEEEEEecCCcEEE
Q 007234           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVCE  143 (612)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~s~dg~v~i  143 (612)
                      .+++|.|.         +..|++++.+|.|++||..+  ++..+ . |..     .|.+++|||||++|++|+.||+|++
T Consensus        89 ~~vawSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           89 RVCKPSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             EEEEECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             EEEEECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            88888886         78899999999999999544  44444 4 554     5999999999999999999999999


Q ss_pred             EECCCCce-------eEEE----ecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCee---EEEE-ecCCCCEEEEEE
Q 007234          144 IDPLTGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMTF  207 (612)
Q Consensus       144 wd~~~~~~-------~~~~----~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~---~~~~-~~h~~~v~~l~~  207 (612)
                      ||+.++..       +.++    .+|...|.+++|+||| +++++. +.|++||+.+++.   ..++ .+|...|.+++|
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            99998853       5776    5566799999999999 555555 8999999988773   4567 488899999999


Q ss_pred             eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe--cCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       208 sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      +  |+.+++++  ++.|++||+.+++..    ....+|... +..+.+  +     |++..++++++||+ ++|..+.  
T Consensus       235 s--g~~LASa~--~~tIkLWd~~~~~~~----~~~~gh~~~-V~~va~~~s-----~d~~~La~a~edG~-klw~~d~--  297 (588)
T 2j04_A          235 V--DYKVVLTC--PGYVHKIDLKNYSIS----SLKTGSLEN-FHIIPLNHE-----KESTILLMSNKTSY-KVLLEDE--  297 (588)
T ss_dssp             E--TTEEEEEC--SSEEEEEETTTTEEE----EEECSCCSC-CCEEEETTC-----SSCEEEEECSSCEE-EEEESSS--
T ss_pred             E--CCEEEEEe--CCeEEEEECCCCeEE----EEEcCCCce-EEEEEeeeC-----CCCCEEEEEcCCCC-EEEeecc--
Confidence            9  67888875  699999999987642    334344444 445677  6     99999999999999 9999771  


Q ss_pred             eecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEe
Q 007234          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (612)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~  365 (612)
                                 +.    ++|++.    .+++.  ++.++.|+.     .|....    .+. +...|.+++|||||+.+ 
T Consensus       298 -----------~~----~spd~~----l~a~~--d~~v~lW~~-----~g~~l~----~~~-~~~~I~~va~SPdG~~l-  345 (588)
T 2j04_A          298 -----------LH----VTADNI----IAPYL--EKKFKKWST-----IWNEFN----NYE-TTLVIHGISLSPDGYSI-  345 (588)
T ss_dssp             -----------EE----EECCCS----SHHHH--HHHHHHTTT-----TTTSSS----SSC-CEEEEEEEEECTTSSEE-
T ss_pred             -----------EE----ECCCce----EEEEc--CCEEEEEEC-----CCCcee----eec-cceEEEEEEECCCCCEE-
Confidence                       11    455654    33333  777777762     111111    222 24458999999999999 


Q ss_pred             ccccc
Q 007234          366 MSQSL  370 (612)
Q Consensus       366 ~s~s~  370 (612)
                      ++++.
T Consensus       346 A~~~~  350 (588)
T 2j04_A          346 AIVYD  350 (588)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.5e-29  Score=260.39  Aligned_cols=250  Identities=12%  Similarity=0.184  Sum_probs=201.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--eccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +..+|+++  +|+|++++|++++.||.|++||+.+++....+  ..|...                  +.++.|.+.   
T Consensus        51 h~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~---  107 (372)
T 1k8k_C           51 HNGQVTGV--DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA------------------ARCVRWAPN---  107 (372)
T ss_dssp             CSSCEEEE--EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC------------------EEEEEECTT---
T ss_pred             CCCcccEE--EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc------------------eeEEEECCC---
Confidence            45677555  99999999999999999999999988765544  334443                  444555443   


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC----------
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----------  146 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~----------  146 (612)
                            +.++++|+.+|.|++||+..+.   ....+..+|...|.+++|+|++++|++++.||.|++||+          
T Consensus       108 ------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  181 (372)
T 1k8k_C          108 ------EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA  181 (372)
T ss_dssp             ------SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             ------CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence                  7889999999999999999876   344555679999999999999999999999999999995          


Q ss_pred             --------CCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234          147 --------LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       147 --------~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s  216 (612)
                              ..++.+..+..|...|.+++|+|++++|++++  |.|++||+++++.+..+.+|..+|.+++|+|++.++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence                    46788888988999999999999999999988  89999999999999999999999999999999987776


Q ss_pred             EEcCCCeEEEEEcCC--Cccc---------------------------cceee------Eee--cCCceeEEeEEecCCc
Q 007234          217 SAVGERYIALWRTDG--VKKQ---------------------------SASCV------LAM--EHPAVFMDCRCIDNGG  259 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~--~~~~---------------------------~~~~~------~~~--~~~~~~~~~~~~~~~~  259 (612)
                      +  .|+.|++|++..  +...                           .....      ..+  .|...+..+.+++   
T Consensus       262 ~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---  336 (372)
T 1k8k_C          262 G--HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS---  336 (372)
T ss_dssp             E--TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE---
T ss_pred             E--eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec---
Confidence            5  599999999987  3200                           00000      111  3444444433455   


Q ss_pred             cCCCC---cEEEEEecCCcEEEEECCCccee
Q 007234          260 VDDAG---LYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       260 ~~~~~---~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                        ++|   .+|++++.||.|++|++.+++.+
T Consensus       337 --~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          337 --GGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             --STTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             --CCCcceeeEEEecCCCceEEEEecChhHh
Confidence              777   99999999999999999877654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1e-29  Score=264.41  Aligned_cols=248  Identities=14%  Similarity=0.122  Sum_probs=203.8

Q ss_pred             CCcccceeEEEEcCC----C---CEEEEEeCCCcEEEEECCCCcE-----EEEeeccCCcccccccccccccccccccee
Q 007234            2 GSSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYT   69 (612)
Q Consensus         2 ~s~~V~~l~~~fspd----g---~~las~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~   69 (612)
                      +..+|.++  +|+|+    |   ++|++++.||.|++||+.+++.     ...+..|....             ....+.
T Consensus        61 h~~~v~~~--~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~  125 (397)
T 1sq9_A           61 HKSGLHHV--DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFW  125 (397)
T ss_dssp             CTTCEEEE--EEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEE
T ss_pred             CCCcEEEE--EEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEE
Confidence            35677555  99999    9   9999999999999999998886     77776552000             023455


Q ss_pred             EEEee----ecccccccccCCcE-EEEEECCCcEEEEEcCC------CeEEE-----Eec------cCCCCCeEEEEEec
Q 007234           70 CMKWL----SVDRKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFAT  127 (612)
Q Consensus        70 ~~~w~----~~~~~~~~~~~~~~-l~~gs~~g~I~vwd~~~------~~~~~-----~~~------~~h~~~V~~l~~sp  127 (612)
                      ++.|.    +.         +.+ +++|+.+|.|++||+.+      ++.+.     .+.      ..|...|.+++|+|
T Consensus       126 ~~~~~~~~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  196 (397)
T 1sq9_A          126 ALKWGASNDRL---------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE  196 (397)
T ss_dssp             EEEEECCC-------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred             EEEEeeccCCC---------CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence            66665    32         778 99999999999999998      55543     442      45889999999999


Q ss_pred             CCCEEEEEecCCcEEEEECCCCceeEEEec---C---CCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEEe
Q 007234          128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS  196 (612)
Q Consensus       128 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~~  196 (612)
                      ++ .+++++.||.|++||+++++.+..+..   |   ...|.+++|+|++++|++++     |.|++||+++++.+..+.
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~  275 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  275 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence            99 999999999999999999999999998   8   88999999999999999886     489999999999999999


Q ss_pred             c-------------CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec------CC-----------
Q 007234          197 G-------------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------HP-----------  246 (612)
Q Consensus       197 ~-------------h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~------~~-----------  246 (612)
                      +             |...|.+++|+|++++|++++ .|+.|++||+.+++..     ..+.      .+           
T Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~  349 (397)
T 1sq9_A          276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHG  349 (397)
T ss_dssp             BC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTS
T ss_pred             cCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee-----EEEecccCcccchhhhhcccccc
Confidence            8             999999999999999999988 7999999999987643     3333      33           


Q ss_pred             ----ceeEEeEEecCCccCCCC----------cEEEEEecCCcEEEEECCCcc
Q 007234          247 ----AVFMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       247 ----~~~~~~~~~~~~~~~~~~----------~~l~t~s~dg~i~iwd~~~~~  285 (612)
                          ...+..+.|+     |++          .+|++++.||.|++|++.+++
T Consensus       350 ~~~~~~~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          350 DSLAEPGVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CBCSSCCEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccCCceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                5566777887     887          799999999999999988763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.2e-28  Score=250.44  Aligned_cols=247  Identities=17%  Similarity=0.208  Sum_probs=200.1

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|.++  +|+|||++|++|+.||.|++|+...+........+...+....+.+.                       
T Consensus        85 h~~~V~~~--~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  139 (340)
T 4aow_A           85 HSHFVSDV--VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-----------------------  139 (340)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred             CCCCEEEE--EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec-----------------------
Confidence            35678555  99999999999999999999999998887776654443332222222                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC--CEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                          +.++++|+.||.+++||+...........+|...|..++|++++  ..+++++.|+.|++||+.+++.+..+.+|.
T Consensus       140 ----~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~  215 (340)
T 4aow_A          140 ----NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT  215 (340)
T ss_dssp             ----SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ----CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence                67899999999999999988877666667899999999998864  568899999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-  236 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~-  236 (612)
                      ..|++++|+|++++|++++  |.|++||+++.+.+..+.++ ..|.++.|+|++.++ +++ .|+.|++||++++.... 
T Consensus       216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAA-TGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEE-ETTEEEEEETTTTEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-ecc-CCCEEEEEECCCCeEEEe
Confidence            9999999999999999988  89999999999999888754 689999999998755 455 59999999998765321 


Q ss_pred             ---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                         .........+...+..++|+     |+|++|++|+.||.|++||+.+|.
T Consensus       293 ~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          293 LKQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ECCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ccccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence               00111122344556777887     999999999999999999999885

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=6.2e-29  Score=264.57  Aligned_cols=243  Identities=14%  Similarity=0.185  Sum_probs=204.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.++|.++  +|+|++ +|++|+.||+|++||+.+++.+..+.+|...+.++.|.                  +...   
T Consensus       161 h~~~V~~l--~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------~~~~---  216 (464)
T 3v7d_B          161 HDGGVWAL--KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV------------------EYKN---  216 (464)
T ss_dssp             CSSCEEEE--EECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------------------ESSS---
T ss_pred             CCcCEEEE--EEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEe------------------cCCC---
Confidence            46788555  999998 99999999999999999999999998776655544443                  3211   


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEE----------------------EEeccCCCCCeEEEEEecCCCEEEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADG  139 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~----------------------~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg  139 (612)
                          +.++++|+.||.|++||+.++...                      .....+|...|.++  +++++++++|+.||
T Consensus       217 ----~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~  290 (464)
T 3v7d_B          217 ----IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN  290 (464)
T ss_dssp             ----CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred             ----CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence                678999999999999999887532                      22346788888887  56788999999999


Q ss_pred             cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      .|++||+.+++++..+.+|...|.+++|+|+++++++|+  |.|++||+++++++..+.+|...|.++.|+  +.+++++
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            999999999999999999999999999999999999998  899999999999999999999999999997  5789988


Q ss_pred             EcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      + .|+.|++||+.+....     .... +.......+++     +++.++++++ ||.|++||+.+++.+..
T Consensus       369 s-~dg~v~vwd~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          369 A-ADGSIRGWDANDYSRK-----FSYH-HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             E-TTSEEEEEETTTCCEE-----EEEE-CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             e-CCCcEEEEECCCCcee-----eeec-CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            7 7999999999987533     3332 33344556666     8999999998 89999999999998864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-30  Score=289.73  Aligned_cols=251  Identities=16%  Similarity=0.202  Sum_probs=206.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |.++|+++  +|+|+|++|++|+.||+|+|||+.  +++....+.+|.+.+.++.|+++                  .. 
T Consensus         8 H~~~V~~l--~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~------------------~~-   66 (753)
T 3jro_A            8 HNELIHDA--VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------KF-   66 (753)
T ss_dssp             CCCCEEEE--CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCT------------------TS-
T ss_pred             CcceeEEE--EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCC------------------CC-
Confidence            56788655  999999999999999999999998  55677778777766665555433                  10 


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCC--ceeE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG--SLLG  153 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~--~~~~  153 (612)
                            +.++++|+.||.|++||+.+++  ....+ .+|...|++++|+|+  ++.+++|+.||.|++||+.++  ....
T Consensus        67 ------~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           67 ------GTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             ------CSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             ------CCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence                  6789999999999999999987  44444 679999999999999  999999999999999999887  3445


Q ss_pred             EEecCCCCeeEEEECC-------------CCCEEEEeC--CeEEEEEcCCC----eeEEEEecCCCCEEEEEEeeC---C
Q 007234          154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---G  211 (612)
Q Consensus       154 ~~~~~~~~v~~l~~sp-------------dg~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~---~  211 (612)
                      .+..|...|.+++|+|             ++.++++|+  |.|++||++++    .....+.+|..+|.+++|+|+   +
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  219 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence            6778889999999999             588898887  89999999877    567788899999999999999   8


Q ss_pred             cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      +++++++ .||.|++||+.++.............+...+..+.|+     |+|.++++++.||.|++|++.++..
T Consensus       220 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          220 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             CEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCC
Confidence            9999987 7999999999987432111222223345556677787     9999999999999999999886543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.7e-29  Score=254.07  Aligned_cols=276  Identities=14%  Similarity=0.072  Sum_probs=197.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCe----EEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC---------c
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG---------S  150 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~---------~  150 (612)
                      +.+|++|+.||.|++||+.++.    ....+ .+|...|++++|+|  ++++|++|+.||.|++||+.++         +
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~  101 (351)
T 3f3f_A           23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN  101 (351)
T ss_dssp             SSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred             CCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence            7899999999999999998763    34333 67999999999999  6999999999999999999887         5


Q ss_pred             eeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCCeeEEEEe-------------cCCCCEEEEEEeeC---
Q 007234          151 LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS-------------GHPGAVRFMTFSDN---  210 (612)
Q Consensus       151 ~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~~~~~~-------------~h~~~v~~l~~sp~---  210 (612)
                      .+..+..|...|.+++|+|+  ++++++++  |.|++||+++++.+..+.             +|...+.++.|+|+   
T Consensus       102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  181 (351)
T 3f3f_A          102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS  181 (351)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred             eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence            67788889999999999999  99999887  899999998876544332             68889999999997   


Q ss_pred             CcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC----cEEEEEecCCcEEEEECCCcce
Q 007234          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      +.++++++ .|+.+.+|+...+...   ....+..+...+..+.|+     |++    .+|++++.||.|++||+.++..
T Consensus       182 ~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~~~~~l~s~~~dg~i~iwd~~~~~~  252 (351)
T 3f3f_A          182 PEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGRWYQLIATGCKDGRIRIFKITEKLS  252 (351)
T ss_dssp             CCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred             CcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence            88899887 6999988877766532   345555566667788887     887    8999999999999999887644


Q ss_pred             ecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEec
Q 007234          287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM  366 (612)
Q Consensus       287 ~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~  366 (612)
                      ............... ..+...    ....+..++..   . ................+.+|...|.+++|+|||++| +
T Consensus       253 ~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~  322 (351)
T 3f3f_A          253 PLASEESLTNSNMFD-NSADVD----MDAQGRSDSNT---E-EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL-S  322 (351)
T ss_dssp             -----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE-E
T ss_pred             ccccCCcccceeccC-CCcccc----ccccccccccc---c-eeeeecccccccEEEEEecccccEEEEEEcCCCCEE-E
Confidence            332221111111000 111111    11111111100   0 000111112224455677899999999999999999 9


Q ss_pred             cccceeeecceeeec
Q 007234          367 SQSLLKSKRGRYVQN  381 (612)
Q Consensus       367 s~s~d~~~~~w~~~~  381 (612)
                      +++.|+.+++|++..
T Consensus       323 s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          323 SAGDDGKVRLWKATY  337 (351)
T ss_dssp             EEETTSCEEEEEECT
T ss_pred             EecCCCcEEEEecCc
Confidence            999999999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=258.34  Aligned_cols=253  Identities=11%  Similarity=0.128  Sum_probs=199.2

Q ss_pred             CcccceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCc-EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         3 s~~V~~l~~~fspd---g~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ..+|.+  ++|+|+   |++|++|+.||.|++||+.+++ .+..+.+|...+.++.|.+.+               ..++
T Consensus        65 ~~~v~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~s~  127 (357)
T 3i2n_A           65 AKPIKC--GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL---------------GIGE  127 (357)
T ss_dssp             SSCEEE--EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG---------------GCC-
T ss_pred             cCcEEE--EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc---------------ccCC
Confidence            457754  499999   7999999999999999999988 888888777666555332210               0111


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCe-EEEEeccCCC----CCeEEEE----EecCCCEEEEEecCCcEEEEECCCC
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~-~~~~~~~~h~----~~V~~l~----~sp~~~~l~s~s~dg~v~iwd~~~~  149 (612)
                      .      +.++++|+.||.|++||+.++. .+..+ ..|.    ..|.+++    |+|+++++++++.||.|++||++++
T Consensus       128 ~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  200 (357)
T 3i2n_A          128 G------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM  200 (357)
T ss_dssp             C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT
T ss_pred             C------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC
Confidence            1      7889999999999999999887 44444 3343    3899998    7889999999999999999999998


Q ss_pred             ceeEEEecCCCCeeEEEECC---CCCEEEEeC--CeEEEEEcCCCeeEEEEe-----cCCCCEEEEEEeeCCc-EEEEEE
Q 007234          150 SLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVLSSA  218 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~sp---dg~~l~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~-~l~s~s  218 (612)
                      +.... ..+...|.+++|+|   ++.++++++  |.|++||+++++....+.     +|...|.+++|+|+++ ++++++
T Consensus       201 ~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          201 ALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             EEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             ceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence            87554 55788999999999   999999988  899999998877655544     9999999999999998 677776


Q ss_pred             cCCCeEEEEEcCCCcccc--------------ceeeEeecCCceeEEeEEecCCccCCCCcEEE-EEecCCcEEEEECCC
Q 007234          219 VGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWYGQN  283 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-t~s~dg~i~iwd~~~  283 (612)
                       .|+.|++||+..+....              ...+..+..+...+..+.|+     |++.+|+ +++.||.|++||+.+
T Consensus       280 -~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          280 -GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             -TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECC
T ss_pred             -CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEECCC
Confidence             79999999998654321              12345555566677788887     9999888 799999999999987


Q ss_pred             cce
Q 007234          284 IEE  286 (612)
Q Consensus       284 ~~~  286 (612)
                      .+.
T Consensus       354 ~~~  356 (357)
T 3i2n_A          354 LNK  356 (357)
T ss_dssp             ---
T ss_pred             ccc
Confidence            654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-30  Score=273.67  Aligned_cols=297  Identities=12%  Similarity=0.105  Sum_probs=224.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-eccCCccccccccc-cccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGN-RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .|+|+++.+++++      .|+ .+++.+..+ .+|.+.+.++.|++ +                           +.++
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~---------------------------~~~l   79 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE---------------------------TPYL   79 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS---------------------------SCEE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC---------------------------CCEE
Confidence            5889998888765      488 467888888 77777666666665 4                           7899


Q ss_pred             EEEECCCcEEEEEcCC---CeEEE-EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---CCceeEEEec-----
Q 007234           90 VLGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA-----  157 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~---~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~~~~~~~~~~-----  157 (612)
                      ++|+.||.|++||+.+   +.... ....+|...|++++|+|+++.|++|+.||+|++||+.   +++....+..     
T Consensus        80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence            9999999999999977   43211 1112599999999999999999999999999999994   5555444332     


Q ss_pred             -------CCCCeeEEE--ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          158 -------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       158 -------~~~~v~~l~--~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                             +...+.++.  ++|++.++++++  |.|++||+++++.+..+.+  |...|.+++|+|++++|++++ .|+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i  238 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGII  238 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCE
T ss_pred             EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeE
Confidence                   344666776  668899999988  8999999999999999988  899999999999999999998 79999


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccC
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS  304 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s  304 (612)
                      ++||+++++..   ..+...+. ..+..+.+.+ .+++++.+|++++.||.|++||+.+++.+.........+.... ++
T Consensus       239 ~iwd~~~~~~~---~~~~~~~~-~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~  312 (437)
T 3gre_A          239 DIWDIRFNVLI---RSWSFGDH-APITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-FL  312 (437)
T ss_dssp             EEEETTTTEEE---EEEBCTTC-EEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG-GS
T ss_pred             EEEEcCCccEE---EEEecCCC-CceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce-ec
Confidence            99999987633   22222344 3556664442 1237889999999999999999999887765544332222221 44


Q ss_pred             CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec--cCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      |+++    .+...                          .+.+  |...|.+++|+ ++.+| ++|+.|+.+++|++.+
T Consensus       313 ~~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          313 PIEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNE  359 (437)
T ss_dssp             CBCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTC
T ss_pred             cccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCC
Confidence            4433    11000                          1233  77889999999 88888 9999999999999854

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1e-29  Score=256.49  Aligned_cols=234  Identities=13%  Similarity=0.097  Sum_probs=187.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeE-EEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCC--ceeEEEecCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~  160 (612)
                      +++|++|+.||.|++||+.++.. ....+.+|...|++++|+|  ++++|++|+.|++|++||++++  +....+.+|..
T Consensus        25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~  104 (316)
T 3bg1_A           25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS  104 (316)
T ss_dssp             GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence            78999999999999999998753 2233468999999999975  4889999999999999999887  46677888999


Q ss_pred             CeeEEEECCC--CCEEEEeC--CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeC-----------------CcEEEE
Q 007234          161 GISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN-----------------GKYVLS  216 (612)
Q Consensus       161 ~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~-----------------~~~l~s  216 (612)
                      .|.+++|+|+  +.+|++++  +.|++||++++..   ...+.+|...|.+++|+|+                 +++|++
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  184 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS  184 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred             ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence            9999999998  88999998  8999999987632   3455789999999999997                 367888


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC----cEEEEEecCCcEEEEECCCcceecccCC
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      ++ .|+.|++||+......  .....+..+...+..+.|+     |++    .+|++++.||+|++|++.+...-.    
T Consensus       185 gs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D~~v~iw~~~~~~~~~----  252 (316)
T 3bg1_A          185 GG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQDGRVFIWTCDDASSNT----  252 (316)
T ss_dssp             CB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETTCEEEEEECSSTTCCC----
T ss_pred             ec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCCCeEEEEEccCccccc----
Confidence            87 7999999999754311  1334455566667788887     775    899999999999999976532100    


Q ss_pred             ceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccccee
Q 007234          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (612)
Q Consensus       293 ~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~  372 (612)
                                    ..                                 .+.+..|...|.+++|+|||.+| ++++.|+
T Consensus       253 --------------~~---------------------------------~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~  284 (316)
T 3bg1_A          253 --------------WS---------------------------------PKLLHKFNDVVWHVSWSITANIL-AVSGGDN  284 (316)
T ss_dssp             --------------CB---------------------------------CCEEEECSSCEEEEEECTTTCCE-EEEESSS
T ss_pred             --------------hh---------------------------------hhhhhcCCCcEEEEEEcCCCCEE-EEEcCCC
Confidence                          00                                 00223466789999999999999 9999999


Q ss_pred             eecceee
Q 007234          373 SKRGRYV  379 (612)
Q Consensus       373 ~~~~w~~  379 (612)
                      ++++|+.
T Consensus       285 ~v~lw~~  291 (316)
T 3bg1_A          285 KVTLWKE  291 (316)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.9e-29  Score=257.76  Aligned_cols=257  Identities=13%  Similarity=0.132  Sum_probs=206.5

Q ss_pred             cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcC--CCeEEEEeccC
Q 007234           38 QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS--AGQLKWRLSDC  115 (612)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~--~~~~~~~~~~~  115 (612)
                      +++..+.+|...+.++.|+++                           +.+|++|+.||.|++||+.  +++.+..+ .+
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~---------------------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~   53 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYY---------------------------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TG   53 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSS---------------------------SSEEEEEETTSCEEEEEEETTEEEEEEEE-CC
T ss_pred             CccEEecCCcccEEEEEEcCC---------------------------CCEEEEEECCCcEEEEecCCCcceeeeEe-cC
Confidence            445566777776666666665                           8899999999999999998  44455444 67


Q ss_pred             CCCCeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcC
Q 007234          116 HPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCS  187 (612)
Q Consensus       116 h~~~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~  187 (612)
                      |...|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  +.++++++  |.|++||++
T Consensus        54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            9999999999977  8999999999999999999987  77778888999999999999  99999988  899999998


Q ss_pred             CCe--eEEEEecCCCCEEEEEEee-------------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEe
Q 007234          188 DHK--KMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (612)
Q Consensus       188 ~~~--~~~~~~~h~~~v~~l~~sp-------------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (612)
                      ++.  ....+.+|...|.+++|+|             ++.++++++ .|+.|++||+.++... ......+..+...+..
T Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~  211 (379)
T 3jrp_A          134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRD  211 (379)
T ss_dssp             TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEE
T ss_pred             CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcc-eeeEEEEecccCcEeE
Confidence            873  4556788999999999999             689999987 7999999999876533 1234455556666778


Q ss_pred             EEecCCccCCC---CcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCce
Q 007234          253 RCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (612)
Q Consensus       253 ~~~~~~~~~~~---~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~  329 (612)
                      +.|+     |+   +.+|++++.||.|++||+.++....     .....                               
T Consensus       212 ~~~s-----p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~-------------------------------  250 (379)
T 3jrp_A          212 VAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPW-----KKTLL-------------------------------  250 (379)
T ss_dssp             EEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEEES-------------------------------
T ss_pred             EEEC-----CCCCCCCeEEEEeCCCEEEEEeCCCCCccc-----eeeee-------------------------------
Confidence            8887     88   8999999999999999987653210     00000                               


Q ss_pred             EEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                    ....|...|.+++|+|||++| ++++.|+.+++|++.
T Consensus       251 --------------~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          251 --------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKEN  286 (379)
T ss_dssp             --------------SSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEEEEE
T ss_pred             --------------ccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEEeCC
Confidence                          112355679999999999999 999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-30  Score=275.48  Aligned_cols=245  Identities=9%  Similarity=0.124  Sum_probs=188.7

Q ss_pred             CcccceeEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEE-----------EEeeccCCccccccccccccccccc
Q 007234            3 SSNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQ-----------TEFADIASTETTSLYGNRLEREHLS   65 (612)
Q Consensus         3 s~~V~~l~~~fspd------g~~las~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~s~~~~~~~~~   65 (612)
                      .+.|+.+  +|+|+      +.+||+++.||+|+|||+.++...           ..+.+|                  .
T Consensus       207 ~~~V~~v--~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h------------------~  266 (524)
T 2j04_B          207 FGEVWDL--KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA------------------D  266 (524)
T ss_dssp             CCSEEEE--EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT------------------T
T ss_pred             CCcEEEE--EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC------------------C
Confidence            3567555  99997      579999999999999999876422           122222                  2


Q ss_pred             cceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEE--EEecCC-CEEEEEecCCcEE
Q 007234           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVC  142 (612)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l--~~sp~~-~~l~s~s~dg~v~  142 (612)
                      ..++++.|.+          +..|++|+.||+|++||+.++........+|...|+++  .|+|++ .+|+|||.|++|+
T Consensus       267 ~~v~sv~~s~----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          267 SLITTFDFLS----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             TCEEEEEESS----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             CCEEEEEecC----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence            3566777764          34799999999999999998754333346899999999  578887 8999999999999


Q ss_pred             EEECCCCceeEEEecCCC--CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234          143 EIDPLTGSLLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       143 iwd~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      +||++++++...+.+|..  .|.+++|+|+++.+++++  ++|++||++++.++..+.+|.+.|++++|+|+|++|++++
T Consensus       337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred             EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence            999999888777776653  588999999999999887  7999999999998888999999999999999999999987


Q ss_pred             cCCCeEEEEEcCCCcccc---------------------------------------ceeeEeecCCceeEEeEEecCCc
Q 007234          219 VGERYIALWRTDGVKKQS---------------------------------------ASCVLAMEHPAVFMDCRCIDNGG  259 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  259 (612)
                       .|++|++||+.......                                       ..+...+..+...+..++|+   
T Consensus       417 -~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs---  492 (524)
T 2j04_B          417 -ADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN---  492 (524)
T ss_dssp             -TTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC---
T ss_pred             -CCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC---
Confidence             79999999965321110                                       00011111222334455665   


Q ss_pred             cCCCC---cEEEEEecCCcEEEEECCC
Q 007234          260 VDDAG---LYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       260 ~~~~~---~~l~t~s~dg~i~iwd~~~  283 (612)
                        |++   .++++|+.||.|+||++.-
T Consensus       493 --p~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          493 --ETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             --CSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             --CCCCccHHHHhhccCceEEEEEccc
Confidence              774   5999999999999999753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-28  Score=261.97  Aligned_cols=256  Identities=13%  Similarity=0.051  Sum_probs=197.1

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCcccccccccc----------c-----------
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNR----------L-----------   59 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~----------~-----------   59 (612)
                      .|+..+  +|+|||++|++++ ++.|++||+.+|+   .+..+..+........+...          .           
T Consensus         5 ~p~~~v--~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQNL--LTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCCEE--EECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccEEEE--EecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            577655  9999999776664 7899999999999   77777654331111111000          0           


Q ss_pred             -----------ccc----ccccceeEEEeeecccccccccCCcE-EEEEECCCcEEEEEcC--CCeEEEEec-cCCCCCe
Q 007234           60 -----------ERE----HLSVDYTCMKWLSVDRKKKRKLGSSL-LVLGTGGGDVLALAVS--AGQLKWRLS-DCHPGGV  120 (612)
Q Consensus        60 -----------~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~-l~~gs~~g~I~vwd~~--~~~~~~~~~-~~h~~~V  120 (612)
                                 ..+    .....+.++.|.+.         +.+ +++|+.||.|++||+.  +++.+..+. ..|...|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP  152 (450)
T ss_dssp             ------------------CCCCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence                       000    01124778888775         566 4889999999999999  787776553 2577899


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEECCCCceeE----EEecCCCCeeEEEECCC---CCEEEEeC--CeEEEEEcCCCee
Q 007234          121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK  191 (612)
Q Consensus       121 ~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~~v~~l~~spd---g~~l~~~~--g~i~lwd~~~~~~  191 (612)
                      ++++|+|++++|++|+.||.|++|++.+++...    .+.+|...|.+++|+|+   +++|++++  +.|++||+++++.
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            999999999999999999999999998877554    77889999999999999   99999988  8999999999988


Q ss_pred             EEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-----------------------CCc
Q 007234          192 MQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HPA  247 (612)
Q Consensus       192 ~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~  247 (612)
                      +.. +.+|...|.+++|+ ++++|++++ .|+.|++||+.+++..   ..+...                       ...
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccce
Confidence            877 56899999999999 999999998 7999999999988744   111111                       112


Q ss_pred             eeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEEC
Q 007234          248 VFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG  281 (612)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~  281 (612)
                      ..+..+.+.     |++++|++++ .|+.|++|++
T Consensus       308 ~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKIIKS-----KNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence            345566676     8999999999 8999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1e-29  Score=262.74  Aligned_cols=197  Identities=11%  Similarity=0.139  Sum_probs=156.0

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      +..+|.++  +|+|+|++|++++.||+|++||+.+++   ....+.+|...+.++.|+++                    
T Consensus        54 h~~~v~~~--~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------  111 (377)
T 3dwl_C           54 HDKIVTCV--DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--------------------  111 (377)
T ss_dssp             CSSCEEEE--EECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT--------------------
T ss_pred             CCceEEEE--EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC--------------------
Confidence            45678555  999999999999999999999999887   56666666665555555554                    


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeE---EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--------
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------  147 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~--------  147 (612)
                             +.++++|+.||.|++||+.+++.   ...+...|...|++++|+|++++|++++.|++|++||+.        
T Consensus       112 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          112 -------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             -------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             -------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence                   77899999999999999998873   555544499999999999999999999999999999985        


Q ss_pred             ----------CCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCC
Q 007234          148 ----------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNG  211 (612)
Q Consensus       148 ----------~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~  211 (612)
                                .++++..+ .|...|.+++|+|+|++|++++  |.|++||+++++.    +..+.+|..+|.+++|+|++
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES  263 (377)
T ss_dssp             CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred             cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence                      34556666 7888999999999999999987  8999999999987    78889999999999999999


Q ss_pred             cEEEEEEcCCCeEEEEEcC
Q 007234          212 KYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~  230 (612)
                      ++|++++ .++.+ +|+..
T Consensus       264 ~~l~~~~-~~~~~-~~~~~  280 (377)
T 3dwl_C          264 AIVAAGY-NYSPI-LLQGN  280 (377)
T ss_dssp             EEEEEES-SSSEE-EECCC
T ss_pred             CEEEEEc-CCcEE-EEEeC
Confidence            9888775 45554 77665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-28  Score=249.54  Aligned_cols=243  Identities=14%  Similarity=0.154  Sum_probs=205.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|.++  +|+|++++|++++.||.|++||+.+++.+..+. +...+.++.|+++                       
T Consensus        73 h~~~v~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-----------------------  126 (369)
T 3zwl_B           73 HTGTIWSI--DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPC-----------------------  126 (369)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT-----------------------
T ss_pred             cCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccC-----------------------
Confidence            45677555  999999999999999999999999999988876 4444444444443                       


Q ss_pred             cccCCcEEEEEECC-----CcEEEEEcCCCeE-----------EEEeccCCCC--CeEEEEEecCCCEEEEEecCCcEEE
Q 007234           82 RKLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCE  143 (612)
Q Consensus        82 ~~~~~~~l~~gs~~-----g~I~vwd~~~~~~-----------~~~~~~~h~~--~V~~l~~sp~~~~l~s~s~dg~v~i  143 (612)
                          +.++++++.+     |.|.+||+..+..           ...+ ..|..  .+.+++|+|+++.|++++.||.|++
T Consensus       127 ----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          127 ----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             ----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             ----CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence                7889999999     9999999976532           1122 34555  8999999999999999999999999


Q ss_pred             EECCC-CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       144 wd~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      ||+.+ ++.+..+..|...|.+++|+|++++|++++  |.|++||+++++.+..+. +...+.+++|+|+++++++++ .
T Consensus       202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~  279 (369)
T 3zwl_B          202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-G  279 (369)
T ss_dssp             EETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-C
T ss_pred             EECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-c
Confidence            99998 788889999999999999999999999987  899999999999988887 788999999999999999987 5


Q ss_pred             CC--------------eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          221 ER--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       221 d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      ++              .+++||+.+++..     ..+..+...+..+.|+     |++++|++++.||.|++|+++++..
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          280 QEAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             CC-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             CCCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccc
Confidence            66              8999999888643     4445556667778887     9999999999999999999987754


Q ss_pred             e
Q 007234          287 L  287 (612)
Q Consensus       287 ~  287 (612)
                      .
T Consensus       350 ~  350 (369)
T 3zwl_B          350 D  350 (369)
T ss_dssp             T
T ss_pred             h
Confidence            3

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=5.8e-28  Score=253.82  Aligned_cols=244  Identities=16%  Similarity=0.286  Sum_probs=202.4

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ...|+++  +|+|||++||+|+.||+|+|||+.+++++..+.+|...+.                  ++.|.        
T Consensus       147 ~~~V~sv--~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~------------------~~s~~--------  198 (420)
T 4gga_A          147 GEYISSV--AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG------------------SLSWN--------  198 (420)
T ss_dssp             TCCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE--------
T ss_pred             CCcEEEE--EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE------------------EEeeC--------
Confidence            3457545  9999999999999999999999999999999887655433                  34442        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc----eeEEEecC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAS  158 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~  158 (612)
                         +.++++|+.++.+++||............+|...+..+.|+|+++++++++.|+.|++||..+++    .+.....|
T Consensus       199 ---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~  275 (420)
T 4gga_A          199 ---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH  275 (420)
T ss_dssp             ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC
T ss_pred             ---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc
Confidence               67899999999999999988665545557899999999999999999999999999999998775    35667778


Q ss_pred             CCCeeEEEECCCCC-EEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE-cCCCeEEEEEcCCC
Q 007234          159 TKGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGV  232 (612)
Q Consensus       159 ~~~v~~l~~spdg~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~~d~~i~vwd~~~~  232 (612)
                      ...|.+++|+|++. ++++++    +.|++||+.++++...+..| ..+.++.|+|+++.+++++ ..|+.|++||+.++
T Consensus       276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            88999999999654 555432    79999999999999888755 5788999999999888764 35899999999988


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      +.     +..+..|...+..++|+     |+|.+|++|+.||+|++||+......+
T Consensus       355 ~~-----v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          355 AK-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             CE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             cE-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCccc
Confidence            64     35566666677888887     999999999999999999987665443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-28  Score=250.88  Aligned_cols=234  Identities=14%  Similarity=0.079  Sum_probs=184.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      .+.+|+.+|++|+.||+|++||+.+++.+..+.  ...+..+.|.+                             . +++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-----------------------------~-~~s   90 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-----------------------------A-IIS   90 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-----------------------------S-EEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-----------------------------c-eEE
Confidence            456788999999999999999999999888775  22233222221                             2 788


Q ss_pred             EECCCcEEEEEcC---------CCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCceeEEEec-CC
Q 007234           92 GTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST  159 (612)
Q Consensus        92 gs~~g~I~vwd~~---------~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~  159 (612)
                      |+.|+.|++|+..         +++.+..+..+|...|.+++|+|  +++++++|+.||+|++||+++++....+.. +.
T Consensus        91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  170 (343)
T 3lrv_A           91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD  170 (343)
T ss_dssp             ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred             ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence            8888888888554         66666666667889999999999  999999999999999999999998777644 44


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE-EEEec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ..+.+++|+|+|.++++|+  |.|++||+++++.+ ..+.+ |.++|.+++|+|++.+|++++ .+ .|++||+++.+..
T Consensus       171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~  248 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGT  248 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTSSTTC
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcc
Confidence            5899999999999999987  99999999999887 78888 999999999999999999987 34 9999999987643


Q ss_pred             cceeeEeecCCceeE--EeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcce
Q 007234          236 SASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEE  286 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~  286 (612)
                      ..  +..+..+...+  .+++|+     |+|++|++++. |+.|++|++.+...
T Consensus       249 ~~--~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          249 LA--YPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             BS--SCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ee--ecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEccccc
Confidence            11  11111111111  357777     99999999998 99999999876543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=239.70  Aligned_cols=236  Identities=13%  Similarity=0.218  Sum_probs=194.5

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      ..+|.++  +|+|++++|++++.||.|++|++...   +....+.+|...                  ..++.|.     
T Consensus        59 ~~~v~~~--~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~-----  113 (313)
T 3odt_A           59 QGFLNSV--CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN------------------VCSLSFQ-----  113 (313)
T ss_dssp             SSCEEEE--EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC------------------EEEEEEE-----
T ss_pred             CccEEEE--EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC------------------EEEEEec-----
Confidence            4677555  99999999999999999999998754   445555544443                  3455551     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEec-
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-  157 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-  157 (612)
                            +.++++|+.+|.|++||  .+.....+ ..|...|.++.|+| +++.+++++.||.|++||  .++....+.. 
T Consensus       114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~  182 (313)
T 3odt_A          114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI  182 (313)
T ss_dssp             ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred             ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence                  67899999999999999  56666555 57999999999998 899999999999999999  5677777777 


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +...+.+++|+|++. +++++  |.|++||+++++.+..+.+|..+|.+++|+|++ .+++++ .|+.|++||+.+++..
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK  259 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence            788999999999999 55555  899999999999999999999999999999999 477777 7999999999988643


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                           ..+..+...+..+.|+     |+++ +++++.||.|++||+++++...
T Consensus       260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceee
Confidence                 3444555566777887     8888 6679999999999998887654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.9e-28  Score=258.36  Aligned_cols=249  Identities=12%  Similarity=0.180  Sum_probs=199.9

Q ss_pred             CCcccceeEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CcEEEEeeccCCccccccccccccccccccceeE
Q 007234            2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTC   70 (612)
Q Consensus         2 ~s~~V~~l~~~fspd-g~~las~s~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~   70 (612)
                      +.++|+.+  +|+|+ +.+||+++.||.|+|||+.+          ......+.+|...+.++.|++.            
T Consensus       127 h~~~v~~l--~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------------  192 (430)
T 2xyi_A          127 HEGEVNRA--RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN------------  192 (430)
T ss_dssp             ESSCCSEE--EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT------------
T ss_pred             CCCcEEEE--EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC------------
Confidence            35678666  99997 78999999999999999986          5666677766665554444443            


Q ss_pred             EEeeecccccccccCCc-EEEEEECCCcEEEEEcCCCeE----E--EEeccCCCCCeEEEEEec-CCCEEEEEecCCcEE
Q 007234           71 MKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQL----K--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVC  142 (612)
Q Consensus        71 ~~w~~~~~~~~~~~~~~-~l~~gs~~g~I~vwd~~~~~~----~--~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~  142 (612)
                                     +. +|++|+.+|.|++|++..+..    +  .....+|...|.+++|+| ++..|++++.||.|+
T Consensus       193 ---------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          193 ---------------LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             ---------------STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             ---------------CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence                           44 899999999999999987432    1  122357999999999999 678899999999999


Q ss_pred             EEECCCC---ceeEEEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCC-CeeEEEEecCCCCEEEEEEeeCCc-EE
Q 007234          143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YV  214 (612)
Q Consensus       143 iwd~~~~---~~~~~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~-~l  214 (612)
                      +||++++   +.+..+..|...|++++|+|+++ ++++|+  |.|++||+++ ++++..+.+|...|.+++|+|+++ ++
T Consensus       258 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             EEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             EEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence            9999987   57788888999999999999987 577776  8999999998 567889999999999999999996 56


Q ss_pred             EEEEcCCCeEEEEEcCCCcccc---------ceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEecCCcEEEEECCCc
Q 007234          215 LSSAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s~dg~i~iwd~~~~  284 (612)
                      ++++ .|+.|++||+.......         ...++....+...+..+.|+     |++. ++++++.||.|++|++...
T Consensus       338 ~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          338 ASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence            7766 79999999998732110         12345555556667778887     8888 8999999999999998655


Q ss_pred             c
Q 007234          285 E  285 (612)
Q Consensus       285 ~  285 (612)
                      .
T Consensus       412 ~  412 (430)
T 2xyi_A          412 V  412 (430)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=1.4e-28  Score=255.00  Aligned_cols=240  Identities=16%  Similarity=0.190  Sum_probs=188.8

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +..+|.++  +|+| ++++|++++.||.|++||+.+ .....+..+..               ....+.++.|.+.    
T Consensus       117 h~~~v~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~---------------~~~~v~~~~~~~~----  174 (383)
T 3ei3_B          117 PGDAITGM--KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDS---------------WDYWYCCVDVSVS----  174 (383)
T ss_dssp             TTCBEEEE--EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCC---------------SSCCEEEEEEETT----
T ss_pred             cCCceeEE--EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCC---------------CCCCeEEEEECCC----
Confidence            45677555  9999 789999999999999999985 55555543321               0123556666553    


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCC----CceeEEE
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKF  155 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~----~~~~~~~  155 (612)
                           +.++++|+.+|.|++||+ +++.+..+ .+|...|.+++|+|+++ +|++|+.|+.|++||+++    +..+..+
T Consensus       175 -----~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  247 (383)
T 3ei3_B          175 -----RQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM  247 (383)
T ss_dssp             -----TTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred             -----CCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence                 789999999999999999 46666565 57999999999999999 899999999999999987    5666666


Q ss_pred             ecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----------------CCEEEEEEeeCCcEEE
Q 007234          156 RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVL  215 (612)
Q Consensus       156 ~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----------------~~v~~l~~sp~~~~l~  215 (612)
                       .|...|.+++|+| ++++|++++  +.|++||+++++....+.+|.                 ..+..++|+|++++  
T Consensus       248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--  324 (383)
T 3ei3_B          248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--  324 (383)
T ss_dssp             -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred             -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence             5889999999999 999999988  899999999988877777654                 33445666777765  


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      +++ .|+.|++||+.+++..   ..+...++...+.+++|+     |++.+|++++ ||.|++||+++
T Consensus       325 s~s-~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 LLN-DKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CTT-CCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccC-CCCeEEEEecCCCcee---eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence            444 7999999999988743   222222245666777887     9999999997 99999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.2e-28  Score=255.37  Aligned_cols=247  Identities=14%  Similarity=0.200  Sum_probs=200.1

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeeccCCccccccccccccccccccceeEEEe
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      +.++|.++  +|+| ++++||+|+.||+|+|||+.++       +.+..+.+|...+.++.|+++               
T Consensus        80 h~~~V~~~--~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---------------  142 (402)
T 2aq5_A           80 HTAPVLDI--AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT---------------  142 (402)
T ss_dssp             CSSCEEEE--EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS---------------
T ss_pred             CCCCEEEE--EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC---------------
Confidence            45778555  9999 9999999999999999999988       556777766665555555444               


Q ss_pred             eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee
Q 007234           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~  152 (612)
                         .        ..++++|+.||.|++||+.+++.+..+. .+|...|++++|+|++++|++++.||.|++||+++++.+
T Consensus       143 ---~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          143 ---A--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             ---B--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             ---C--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence               2        3689999999999999999999987774 579999999999999999999999999999999999999


Q ss_pred             EEE-ecCCCC-eeEEEECCCCCEEEEe---C--CeEEEEEcCCCee-EEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          153 GKF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       153 ~~~-~~~~~~-v~~l~~spdg~~l~~~---~--g~i~lwd~~~~~~-~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      ..+ ..|... +.++.|+|+++++++|   +  +.|++||+++++. +.... .|...+.+++|+|+++++++++..|+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            998 677765 8999999999999998   4  8999999998754 33332 577889999999999999877657999


Q ss_pred             EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      |++||+.+++.. ...+.... +...+..+.|+     |++.++++  .++.+++|++.++.
T Consensus       292 i~i~d~~~~~~~-~~~l~~~~-~~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          292 IRYFEITSEAPF-LHYLSMFS-SKESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEEEECSSTTC-EEEEEEEC-CSSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EEEEEecCCCcc-eEeecccc-cCCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence            999999987631 01222222 33455667787     88888764  56799999988754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=1.5e-27  Score=252.55  Aligned_cols=263  Identities=16%  Similarity=0.253  Sum_probs=212.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|.++  +|+  +++|++|+.||+|++||+.+++.+..+.+|...+.                  ++.|.       
T Consensus       158 h~~~v~~~--~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~-------  208 (445)
T 2ovr_B          158 HTGGVWSS--QMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR------------------CMHLH-------  208 (445)
T ss_dssp             CSSCEEEE--EEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE-------
T ss_pred             CCCCEEEE--Eec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE------------------EEEec-------
Confidence            45677544  786  67999999999999999999999999887665544                  34442       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..+++|+.||.|++||+.+++.+..+ .+|...|.+++|  +++.+++|+.||.|++||+.+++.+..+.+|...
T Consensus       209 ----~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  281 (445)
T 2ovr_B          209 ----EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR  281 (445)
T ss_dssp             ----TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence                567999999999999999999988776 579999999999  6889999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      |.+++|  ++.++++++  |.|++||+++++.+..+.+|...+.++.++  ++++++++ .|+.|++||+.+++..    
T Consensus       282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~----  352 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL----  352 (445)
T ss_dssp             EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred             eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE----
Confidence            999999  788999887  899999999999999999999999988774  66888887 7999999999887643    


Q ss_pred             eEeecC---CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc-----CCceeEeecccccCCCCcccc
Q 007234          240 VLAMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-----KATKILSSSEDVNSKSQKSAT  311 (612)
Q Consensus       240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~~  311 (612)
                       ..+..   +...+.++.++       +.++++++.||.|++||+.+++.+...     ......+.+.. ++|++.   
T Consensus       353 -~~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~---  420 (445)
T 2ovr_B          353 -QTLQGPNKHQSAVTCLQFN-------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL---  420 (445)
T ss_dssp             -EEECSTTSCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE---
T ss_pred             -EEEccCCCCCCCEEEEEEC-------CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEE---
Confidence             33332   44445556553       589999999999999999999877655     12222222222 566666   


Q ss_pred             hhhhcccccce
Q 007234          312 AAIFAAKLQDI  322 (612)
Q Consensus       312 ~~i~~~~~d~~  322 (612)
                       .+++|+.|+.
T Consensus       421 -~la~~~~dg~  430 (445)
T 2ovr_B          421 -VCAVGSRNGT  430 (445)
T ss_dssp             -EEEEECSSSS
T ss_pred             -EEEEcccCCC
Confidence             6777777653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.7e-27  Score=242.78  Aligned_cols=294  Identities=9%  Similarity=-0.004  Sum_probs=205.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|+++  +|||||++||+|+.+| ++|||+.+++.......+                    ....+.|.+..    
T Consensus        18 h~~~V~~v--~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----   70 (355)
T 3vu4_A           18 VSNPVTDY--EFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT----   70 (355)
T ss_dssp             -CCCCCEE--EECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS----
T ss_pred             CCCceEEE--EECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC----
Confidence            45788655  9999999999998775 789999888766543211                    12233333321    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK  160 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~  160 (612)
                          +.++++|+.++.|++||+.+++.+..+.  |...|.+++|+++.  ++++ .|+.|++||+.++ +.+..+..   
T Consensus        71 ----~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---  138 (355)
T 3vu4_A           71 ----NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---  138 (355)
T ss_dssp             ----SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---
T ss_pred             ----CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---
Confidence                3344667888999999999999987763  67799999998764  4444 4889999999988 77666664   


Q ss_pred             CeeEEEECCCCCEEEEe--C--CeEEEEEcCCCe----------------eEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          161 GISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~--~--g~i~lwd~~~~~----------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      +...+++++  .+++++  +  |.|++||+++++                .+..+.+|..+|.+++|+|+|++|++++ .
T Consensus       139 ~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~  215 (355)
T 3vu4_A          139 FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-Q  215 (355)
T ss_dssp             EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-C
Confidence            445566777  566664  4  899999999865                2678899999999999999999999998 7


Q ss_pred             CCe-EEEEEcCCCccccceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEe
Q 007234          221 ERY-IALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (612)
Q Consensus       221 d~~-i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (612)
                      |++ |++||+.+++..     ..+.  .+...+..+.|+     |+|++|++++.||.|++||+..+...+...-...  
T Consensus       216 d~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~--  283 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW--  283 (355)
T ss_dssp             TCSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--
T ss_pred             CCCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCcccccccce--
Confidence            998 999999988744     3443  255667778887     9999999999999999999977532211000000  


Q ss_pred             ecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecce
Q 007234          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (612)
Q Consensus       298 ~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w  377 (612)
                           +.+.           .++.   .|.           ...+.-...+......++|++||+++ ++++.|+.+++|
T Consensus       284 -----~~~~-----------~~~~---~~~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~~~  332 (355)
T 3vu4_A          284 -----INMK-----------YFQS---EWS-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIETF  332 (355)
T ss_dssp             -----EECC-----------CCCC---SSC-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEEEE
T ss_pred             -----eecc-----------cccc---ccc-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEEEE
Confidence                 0000           0000   000           00000000122234668999999999 888889999999


Q ss_pred             eee
Q 007234          378 YVQ  380 (612)
Q Consensus       378 ~~~  380 (612)
                      ++.
T Consensus       333 ~~~  335 (355)
T 3vu4_A          333 KVV  335 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            873

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=8.9e-28  Score=247.34  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=163.3

Q ss_pred             EEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      +++|||||+++|+++  .|++|+|||+.+++++..+. |...+.++.|+++                           +.
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------g~  189 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------GK  189 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------SS
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------Cc
Confidence            449999999987654  68999999999999998886 5566776666666                           78


Q ss_pred             EEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEecCC----cEEEEECCCCce----eEEEecC
Q 007234           88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS  158 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg----~v~iwd~~~~~~----~~~~~~~  158 (612)
                      ++++++. +.+.+|+..++..+ .....+|...|.+++|+|+++.+++++.|+    .++.||+..+..    ...+.+|
T Consensus       190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~  268 (365)
T 4h5i_A          190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR  268 (365)
T ss_dssp             EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred             eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence            8888874 55677777776654 344567899999999999999999999887    688899876643    3457788


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ...|++++|+|||++||+|+  ++|+|||+++++++..+ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus       269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~  344 (365)
T 4h5i_A          269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN  344 (365)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred             CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence            89999999999999999998  89999999999999886 78999999999999999999998 7999999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.7e-28  Score=259.05  Aligned_cols=247  Identities=15%  Similarity=0.171  Sum_probs=184.0

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      |.++|+++  +|+| ++++|++|+.||+|+|||++++........+..                .....++.|.+.    
T Consensus       163 H~~~V~~l--~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~----  220 (435)
T 4e54_B          163 AGGSITGL--KFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI----------------NIWFCSLDVSAS----  220 (435)
T ss_dssp             SSCCCCEE--EECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC----------------SCCCCCEEEETT----
T ss_pred             CCCCEEEE--EEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC----------------CccEEEEEECCC----
Confidence            46789666  9998 789999999999999999987654433322211                112334455443    


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEE---Ee
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGK---FR  156 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~---~~  156 (612)
                           +.+|++|+.+|.|++||+... .+..+ .+|...|++++|+|+++ +|++|+.|++|++||+++++....   ..
T Consensus       221 -----~~~l~~g~~dg~i~~wd~~~~-~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~  293 (435)
T 4e54_B          221 -----SRMVVTGDNVGNVILLNMDGK-ELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL  293 (435)
T ss_dssp             -----TTEEEEECSSSBEEEEESSSC-BCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred             -----CCEEEEEeCCCcEeeeccCcc-eeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence                 789999999999999999754 34344 68999999999999876 688999999999999988765443   35


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC------EEEEEEeeCCcEEEEEEc---------
Q 007234          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA------VRFMTFSDNGKYVLSSAV---------  219 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~------v~~l~~sp~~~~l~s~s~---------  219 (612)
                      +|...|++++|+|+|++|++++  |.|++||+.+++....+.+|...      +....|+|++..+++++.         
T Consensus       294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  373 (435)
T 4e54_B          294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT  373 (435)
T ss_dssp             BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred             eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence            6888999999999999999998  89999999999888777666532      234567777766666542         


Q ss_pred             --CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          220 --GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       220 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                        .++.|++||..+++..   ......|...+.....|+     |+|.+|++|+ |+.|+||++++++.
T Consensus       374 ~~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          374 PYELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             TTCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred             ecCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence              3457999999988744   222223445555555687     9999998876 88999999988865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.3e-26  Score=232.91  Aligned_cols=240  Identities=15%  Similarity=0.249  Sum_probs=196.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ...|+  +++|+|+|++||+|+.||+|++||+.+++++..+.+|...+.                  ++.+   +     
T Consensus        67 ~~~V~--~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~------------------~~~~---~-----  118 (318)
T 4ggc_A           67 GEYIS--SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG------------------SLSW---N-----  118 (318)
T ss_dssp             TCCEE--EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE------------------EEEE---E-----
T ss_pred             CCeEE--EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE------------------Eeec---C-----
Confidence            34575  459999999999999999999999999999999887654332                  1111   1     


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce----eEEEecC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAS  158 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~~  158 (612)
                         +..+++|+.++.+++|+...+........+|...+..+.++++++++++++.|++|++||+.+++.    ......+
T Consensus       119 ---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  195 (318)
T 4ggc_A          119 ---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH  195 (318)
T ss_dssp             ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC
T ss_pred             ---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc
Confidence               678999999999999999887665555578999999999999999999999999999999987753    3445667


Q ss_pred             CCCeeEEEECCCCCEEE---EeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE-cCCCeEEEEEcCCC
Q 007234          159 TKGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGV  232 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~---~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~~d~~i~vwd~~~~  232 (612)
                      ...|.++.++|++..++   +++  +.|++||.+........ .+...+..+.|+|++..+++++ ..|+.|++||+.++
T Consensus       196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence            78999999999765443   333  79999999988876655 4778899999999999887754 36899999999988


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      +.     +..+..+...+..++|+     |+|++|++++.||+|++||+...
T Consensus       275 ~~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          275 AK-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCC
T ss_pred             cE-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCC
Confidence            64     35566666677888887     99999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2.9e-27  Score=249.31  Aligned_cols=254  Identities=13%  Similarity=0.148  Sum_probs=197.2

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC----------CeEEEEeccCCCCCeEEEEEecCCC-EEEEE
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIYSA  135 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~----------~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~  135 (612)
                      .+.++.|.+.+        +.++++|+.+|.|++|++..          ......+ .+|...|++++|+|++. +|++|
T Consensus       130 ~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          130 EVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             CCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEE
Confidence            45667776643        56899999999999999986          4455444 57999999999999988 99999


Q ss_pred             ecCCcEEEEECCCCce-------eEEEecCCCCeeEEEECC-CCCEEEEeC--CeEEEEEcCCC---eeEEEEecCCCCE
Q 007234          136 GADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAV  202 (612)
Q Consensus       136 s~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v  202 (612)
                      +.||.|++||+..+..       ...+..|...|.+++|+| ++.++++++  |.|++||++++   +.+..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987422       456778889999999999 678888876  89999999987   5777888999999


Q ss_pred             EEEEEeeCCc-EEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC-cEEEEEecCCcEEEEE
Q 007234          203 RFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWY  280 (612)
Q Consensus       203 ~~l~~sp~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~t~s~dg~i~iwd  280 (612)
                      ++++|+|++. ++++++ .|+.|++||++.....    +..+..+...+..+.|+     |++ .+|++++.||.|++||
T Consensus       281 ~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~----~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGS-ADKTVALWDLRNLKLK----LHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             EEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSC----SEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEEE
T ss_pred             EEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCC----eEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEEe
Confidence            9999999998 566766 7999999999885422    33444455566777887     877 5799999999999999


Q ss_pred             CCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCC
Q 007234          281 GQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD  360 (612)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~d  360 (612)
                      +.........               .      .    ..++                .........+|...|.+++|+|+
T Consensus       351 ~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~p~  389 (430)
T 2xyi_A          351 LSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWNPN  389 (430)
T ss_dssp             GGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEECSS
T ss_pred             CCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEECCC
Confidence            8663221100               0      0    0000                01122245678888999999999


Q ss_pred             Cc-eEeccccceeeecceeeec
Q 007234          361 GV-LLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       361 g~-~l~~s~s~d~~~~~w~~~~  381 (612)
                      +. ++ ++++.|+.+++|++.+
T Consensus       390 ~~~~l-~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          390 EPWII-CSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             STTEE-EEEETTSEEEEEEECH
T ss_pred             CCCEE-EEEECCCCEEEeEccc
Confidence            99 55 9999999999999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.3e-26  Score=244.18  Aligned_cols=279  Identities=15%  Similarity=0.091  Sum_probs=213.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++|+|++.++++++.|+.|++||+.+++....+....            ..+| .....++.|.+.         +.++
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~~  184 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NELW  184 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEEE
Confidence            45999988888888889999999999999886432100            0011 123445555322         7789


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                      ++++.+|.|++||+.+++.+..+ ..|...+.+++|+|+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+
T Consensus       185 ~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~  262 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS  262 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC
T ss_pred             EEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc
Confidence            99999999999999999988776 4688999999999999988554 4799999999999998888775 3468999999


Q ss_pred             CCCCEEEEeC----------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          169 SDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       169 pdg~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      |+|+++++++          |.|++||+.+++.+..+ .|...+.+++|+|+++.++.++..|+.|++||+.+++..   
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~---  338 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ---  338 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE---
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE---
Confidence            9999888765          38999999999887766 466688999999999877666558999999999977633   


Q ss_pred             eeEeecCCceeEEeEEecCCccCCCCcEEEEEec---------------CCcEEEEECCCcceecccCCceeEeeccccc
Q 007234          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (612)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (612)
                        ..+.+.. .+..++++     |+|+++++++.               ||.|++||..+++.+.               
T Consensus       339 --~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~---------------  395 (433)
T 3bws_A          339 --KSIPVFD-KPNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE---------------  395 (433)
T ss_dssp             --EEEECSS-SEEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE---------------
T ss_pred             --EEecCCC-CCCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE---------------
Confidence              3333333 34567777     99999888876               4688888876655432               


Q ss_pred             CCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       304 s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                              .+.. ...+.+++|+|||++|+++++.|+++++|++.
T Consensus       396 ----------------------------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          396 ----------------------------------------FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ----------------------------------------EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ----------------------------------------EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                                                    1111 22578899999999994455569999999873

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2.2e-27  Score=247.02  Aligned_cols=231  Identities=12%  Similarity=0.023  Sum_probs=170.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEE----EeccCCCCCeEEEEEec--------CCCEEEEEecCCcEEEEECCCCceeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~----~~~~~h~~~V~~l~~sp--------~~~~l~s~s~dg~v~iwd~~~~~~~~  153 (612)
                      +.++++|+.|++|++||..+++...    ..+.+|.+.|++++|+|        |+++|++||.|++|++||+.++.++.
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            6689999999999999999987643    23478999999999998        78899999999999999999998888


Q ss_pred             EEecCCCCeeEEEECCCCC-EEEEeC--CeEEEEEcCCCeeEEE-------------------------EecCCCCEEEE
Q 007234          154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM  205 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg~-~l~~~~--g~i~lwd~~~~~~~~~-------------------------~~~h~~~v~~l  205 (612)
                      .+..|...+.+++|+|++. +|++++  |+|++||+++++....                         ..+|...+.++
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v  260 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV  260 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred             eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence            8888999999999999875 688877  8999999988754332                         23677888899


Q ss_pred             EEe-eCCcEEEEEEcCCCeEEEEEcCCCccccce--------------eeEeecCCceeEEeEEecCCccCCCCcEEEEE
Q 007234          206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (612)
Q Consensus       206 ~~s-p~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~  270 (612)
                      .|+ |+++.+++++ .|+++++||+..+......              ...........+...++.    ..++.++++|
T Consensus       261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg  335 (393)
T 4gq1_A          261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH  335 (393)
T ss_dssp             EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred             eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence            987 7999999987 7999999999876532100              001111112222233332    1355677788


Q ss_pred             ecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCC
Q 007234          271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG  350 (612)
Q Consensus       271 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~  350 (612)
                      +.||.|++||..+++.+.                                                       ....|..
T Consensus       336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~  360 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM  360 (393)
T ss_dssp             TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred             CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence            899999999987664421                                                       2334666


Q ss_pred             CeEEEEecCCCceEeccccceeeeccee
Q 007234          351 EDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       351 ~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                      .|.+++|||||++| +++++++. .+|.
T Consensus       361 ~V~svafspdG~~L-A~as~~Gv-~lvr  386 (393)
T 4gq1_A          361 PIVDFCWHQDGSHL-AIATEGSV-LLTR  386 (393)
T ss_dssp             CEEEEEECTTSSEE-EEEESSEE-EEEE
T ss_pred             cEEEEEEcCCCCEE-EEEeCCCe-EEEE
Confidence            89999999999999 99987765 4443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=6.8e-27  Score=246.79  Aligned_cols=239  Identities=14%  Similarity=0.251  Sum_probs=191.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +.++|.++  +|  ++++|++|+.||+|++||+.+++.+..+.+|...+.++.|+                         
T Consensus       172 h~~~v~~l--~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-------------------------  222 (435)
T 1p22_A          172 HTGSVLCL--QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-------------------------  222 (435)
T ss_dssp             CSSCEEEE--EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-------------------------
T ss_pred             CCCcEEEE--EE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-------------------------
Confidence            35667444  66  88999999999999999999999999988776655443332                         


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEE--EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                          +..+++|+.||.|++||+.++....  ....+|...|.+++|  +++++++|+.||.|++||+.+++.+..+.+|.
T Consensus       223 ----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  296 (435)
T 1p22_A          223 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK  296 (435)
T ss_dssp             ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC
Confidence                4579999999999999999876542  444689999999999  67899999999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc-
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-  236 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~-  236 (612)
                      ..|.++.++  ++++++|+  |.|++||+++++++..+.+|...|.+++|  ++.++++++ .||.|++||+.++.... 
T Consensus       297 ~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~  371 (435)
T 1p22_A          297 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRA  371 (435)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred             CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCccc
Confidence            999999994  67888887  89999999999999999999999999998  788999987 79999999997654210 


Q ss_pred             ---ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                         ..+...+..+...+..+.+       ++.+|++++.||.|++||+.+....
T Consensus       372 ~~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          372 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC-------
T ss_pred             cccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCc
Confidence               1134444445545555555       4678999999999999999876554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.6e-25  Score=232.38  Aligned_cols=265  Identities=13%  Similarity=0.105  Sum_probs=207.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEECCC
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG   96 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~~g   96 (612)
                      .++++++.|+.|++||+.+++++..+..+.. +                  .++.|.+.         +..+ ++++.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~------------------~~~~~s~d---------g~~l~~~~~~d~   54 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-P------------------MGAVISPD---------GTKVYVANAHSN   54 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-E------------------EEEEECTT---------SSEEEEEEGGGT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-c------------------ceEEECCC---------CCEEEEECCCCC
Confidence            4677888999999999999999988865432 3                  34444443         5555 6677899


Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE-
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML-  174 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l-  174 (612)
                      .|++||+.+++.+..+..  ...+.+++|+|+++.++.+ +.|+.|++||+.+++.+..+..+ ..+.+++|+|+|+.+ 
T Consensus        55 ~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             eEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            999999999999877643  3489999999999987554 46799999999999998888754 568999999999987 


Q ss_pred             EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEe
Q 007234          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (612)
Q Consensus       175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (612)
                      ++++  +.|++||+.+++.+..+..|. .+.+++|+|++++++.++..++.|++||+.+++..     ....+.. .+..
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~  204 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG  204 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence            5655  899999999999998887664 56999999999988655557899999999887633     3333433 4456


Q ss_pred             EEecCCccCCCCcEEEEEe---cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCce
Q 007234          253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (612)
Q Consensus       253 ~~~~~~~~~~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~  329 (612)
                      +.++     |+++++++++   .++.|++||+.+++.+.                                         
T Consensus       205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~-----------------------------------------  238 (391)
T 1l0q_A          205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITA-----------------------------------------  238 (391)
T ss_dssp             EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEE-----------------------------------------
T ss_pred             eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEE-----------------------------------------
Confidence            6776     9999999888   68999999987765422                                         


Q ss_pred             EEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                    .+..|. .+.+++|+|||+++.++++.|+.+++|+...
T Consensus       239 --------------~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          239 --------------RIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             --------------EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             --------------EEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence                          111222 4678899999998867888999999999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-27  Score=265.09  Aligned_cols=254  Identities=13%  Similarity=0.145  Sum_probs=203.6

Q ss_pred             EEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC--CeEEEEeccCCCC
Q 007234           41 TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPG  118 (612)
Q Consensus        41 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~--~~~~~~~~~~h~~  118 (612)
                      ..+.+|.+.+.++.|+++                           +.++++|+.||.|++||+..  +.....+ .+|.+
T Consensus         3 ~~l~gH~~~V~~l~~s~d---------------------------g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~   54 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYY---------------------------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEG   54 (753)
T ss_dssp             -----CCCCEEEECCCSS---------------------------SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSS
T ss_pred             eecccCcceeEEEEECCC---------------------------CCeEEEEECCCcEEEEecCCCCCccceec-cCCcC
Confidence            345667777776666666                           78899999999999999984  4455444 68999


Q ss_pred             CeEEEEEecC--CCEEEEEecCCcEEEEECCCCc--eeEEEecCCCCeeEEEECCC--CCEEEEeC--CeEEEEEcCCC-
Q 007234          119 GVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-  189 (612)
Q Consensus       119 ~V~~l~~sp~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~spd--g~~l~~~~--g~i~lwd~~~~-  189 (612)
                      .|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  ++++++|+  |.|++||++++ 
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            9999999988  9999999999999999999887  67778889999999999999  99999988  89999999887 


Q ss_pred             -eeEEEEecCCCCEEEEEEee-------------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234          190 -KKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (612)
Q Consensus       190 -~~~~~~~~h~~~v~~l~~sp-------------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (612)
                       .....+.+|...|.++.|+|             ++.++++++ .||.|++||++++... ......+..+...+..+.|
T Consensus       135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~  212 (753)
T 3jro_A          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAW  212 (753)
T ss_dssp             CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEE
T ss_pred             CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEe
Confidence             34556789999999999999             588899987 7999999999887533 1234455566667778888


Q ss_pred             cCCccCCC---CcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEE
Q 007234          256 DNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV  332 (612)
Q Consensus       256 ~~~~~~~~---~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~  332 (612)
                      +     |+   +.++++++.||.|++||+.+++.....                 .                        
T Consensus       213 s-----p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-----------------~------------------------  246 (753)
T 3jro_A          213 S-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK-----------------T------------------------  246 (753)
T ss_dssp             C-----CCCSSSEEEEEEESSSCEEEEEESSSSSCCBC-----------------C------------------------
T ss_pred             c-----cCCCCCCEEEEEecCCEEEEecCCCCCCccee-----------------E------------------------
Confidence            7     88   899999999999999998765421000                 0                        


Q ss_pred             EeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          333 AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       333 ~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                           .    .....|...|.+++|+|||.++ ++++.|+.+++|++.
T Consensus       247 -----~----~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          247 -----L----LKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLWKEN  284 (753)
T ss_dssp             -----B----SSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECCBCC
T ss_pred             -----E----eccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEEecC
Confidence                 0    0112355678999999999999 999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=3.7e-26  Score=237.90  Aligned_cols=252  Identities=18%  Similarity=0.205  Sum_probs=191.3

Q ss_pred             CCcccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      +..+|.++  +|+| ++++|++++.||.|++||+.+++....+. +..                  ...++.|.+..+. 
T Consensus        98 ~~~~v~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~-  155 (408)
T 4a11_B           98 HRYSVETV--QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEE------------------TVYSHHMSPVSTK-  155 (408)
T ss_dssp             CSSCEEEE--EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSS------------------CEEEEEECSSCSS-
T ss_pred             CCCcEEEE--EEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCC------------------ceeeeEeecCCCC-
Confidence            45678555  9999 78899999999999999999999887775 222                  3445556555433 


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCc-eeEEE---
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKF---  155 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~-~~~~~---  155 (612)
                           +.++++|+.+|.|++||+.+++.+..+ .+|...|++++|+|+++ .|++|+.||.|++||++++. .+..+   
T Consensus       156 -----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~  229 (408)
T 4a11_B          156 -----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH  229 (408)
T ss_dssp             -----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred             -----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence                 679999999999999999999888666 57999999999999998 48899999999999998775 44444   


Q ss_pred             ------------ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----CCEEEEEEeeCCcEEEE
Q 007234          156 ------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       156 ------------~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s  216 (612)
                                  ..|...|.+++|+|+++++++++  |.|++||+.+++....+.++.     ..+........+..+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T 4a11_B          230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF  309 (408)
T ss_dssp             TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred             ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence                        45778999999999999999987  899999999987655443322     11111222233444555


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      ++ .|+.|++||+.+++..     ..+..+...+..+.|+     |++.+|++++.||.|++||+.+++.+.....
T Consensus       310 ~~-~~~~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          310 VP-YGSTIAVYTVYSGEQI-----TMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             EE-ETTEEEEEETTTCCEE-----EEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC---------
T ss_pred             Ee-cCCEEEEEECcCCcce-----eeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence            55 5899999999988643     4555566667778887     9999999999999999999999987765443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=245.19  Aligned_cols=257  Identities=12%  Similarity=0.131  Sum_probs=185.6

Q ss_pred             cccceeEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEee---ccCC------ccccccccc--------------c
Q 007234            4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYGN--------------R   58 (612)
Q Consensus         4 ~~V~~l~~~fspdg--~~las~s~dg~i~iwd~~~~~~~~~~~---~~~~------~~~~~~~s~--------------~   58 (612)
                      ++|.++  +|+|++  .+|++++.||+|++||+.++.......   .+.+      .+....+..              .
T Consensus        94 ~~V~~l--~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           94 EKINKI--RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             CCCCEE--EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             CceEEE--EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence            678666  999998  799999999999999998765432100   0000      000000000              0


Q ss_pred             ccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCC-eEEEEe------ccCCCCCeEEEEEecCC-C
Q 007234           59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRL------SDCHPGGVSAISFATHG-S  130 (612)
Q Consensus        59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~-~~~~~~------~~~h~~~V~~l~~sp~~-~  130 (612)
                      +..+| ...+.++.|.+.         +.++++| .||.|++||+.++ .....+      ..+|...|++++|+|++ +
T Consensus       172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  240 (447)
T 3dw8_B          172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN  240 (447)
T ss_dssp             ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred             eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence            00112 234556666653         7789998 8999999999954 444322      46799999999999998 9


Q ss_pred             EEEEEecCCcEEEEECCCCce----eEEEecCCC------------CeeEEEECCCCCEEEEeC-CeEEEEEcCC-CeeE
Q 007234          131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM  192 (612)
Q Consensus       131 ~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~spdg~~l~~~~-g~i~lwd~~~-~~~~  192 (612)
                      +|++|+.||.|++||+++++.    +..+..|..            .|.+++|+|+|++|++++ +.|++||+++ ++++
T Consensus       241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV  320 (447)
T ss_dssp             EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred             EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence            999999999999999999887    788888776            899999999999999988 9999999997 8888


Q ss_pred             EEEecCCCC---------------EEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee-----------------
Q 007234          193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV-----------------  240 (612)
Q Consensus       193 ~~~~~h~~~---------------v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~-----------------  240 (612)
                      ..+.+|...               +..++|+|++++|++++ .|+.|++||+.+++.......                 
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA  399 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence            889888642               23489999999999887 799999999998764310000                 


Q ss_pred             -----------EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                                 ..... ...+..++|+     |++.+|++++.++ +++|..
T Consensus       400 ~~~~~~~~~~~~~~~~-~~~i~~~~~~-----p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          400 SGKRKKDEISVDSLDF-NKKILHTAWH-----PKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             SSCCCTTCEEGGGCCT-TSCCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred             cCCccccccccccccc-CCceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence                       00011 1223446676     9999999988875 777764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=4.5e-26  Score=231.68  Aligned_cols=248  Identities=10%  Similarity=0.010  Sum_probs=190.6

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEE
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVC  142 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~  142 (612)
                      .+.++.|.+.         +.++++|+.+|.|++|++.++.   ....+ .+|...|++++|+|+++ +|++|+.||.|+
T Consensus        13 ~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A           13 YISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            3455556553         7889999999999999999877   22233 47999999999999999 999999999999


Q ss_pred             EEEC-CCCceeEEEec--CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEe
Q 007234          143 EIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFS  208 (612)
Q Consensus       143 iwd~-~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~s  208 (612)
                      +||+ .+++. ..+..  |...|.+++|+| ++++++++  +.|++||+++         ++++..+. |...|.+++|+
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence            9999 77755 77788  899999999999 99999887  8999999987         77666666 89999999999


Q ss_pred             eCCcEEEEEEcCCCeEEEEEcCC-CccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEecCCcEEEEECCCc--
Q 007234          209 DNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI--  284 (612)
Q Consensus       209 p~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg~i~iwd~~~~--  284 (612)
                      |++  +++++ .|+.|++||+.+ +...   .......+...+..+.++     | ++.++++++.||.|++|+++..  
T Consensus       160 ~~~--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          160 SSR--LIVGM-NNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SSE--EEEEE-STTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             CCc--EEEEe-CCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCCc
Confidence            987  77776 799999999988 5432   112222344456777787     8 9999999999999999998765  


Q ss_pred             ceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceE
Q 007234          285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL  364 (612)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l  364 (612)
                      ....  . .......      ...                             ..    .-..|...|.+++|+|+|++|
T Consensus       229 ~~~~--~-~~~~~~~------~~~-----------------------------~~----~~~~~~~~i~~~~~s~~~~~l  266 (342)
T 1yfq_A          229 DYNS--S-KRFAFRC------HRL-----------------------------NL----KDTNLAYPVNSIEFSPRHKFL  266 (342)
T ss_dssp             STTC--T-TCEEEEC------CCC-----------------------------CT----TCCSSCCCEEEEEECTTTCCE
T ss_pred             cccc--c-cceeeec------ccc-----------------------------cc----cccccceeEEEEEEcCCCCEE
Confidence            1000  0 0000000      000                             00    001355689999999999999


Q ss_pred             eccccceeeecceeeec
Q 007234          365 PMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       365 ~~s~s~d~~~~~w~~~~  381 (612)
                       ++++.|+.+++|++.+
T Consensus       267 -~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          267 -YTAGSDGIISCWNLQT  282 (342)
T ss_dssp             -EEEETTSCEEEEETTT
T ss_pred             -EEecCCceEEEEcCcc
Confidence             9999999999999854

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-25  Score=238.14  Aligned_cols=240  Identities=11%  Similarity=0.072  Sum_probs=188.5

Q ss_pred             ccceeEEEEcCCCCEE-EEEeCCCcEEEEECC--CCcEEEEeec--cCCccccccccccccccccccceeEEEeeecccc
Q 007234            5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         5 ~V~~l~~~fspdg~~l-as~s~dg~i~iwd~~--~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      .|+++  +|+|+|++| |+|+.||.|+|||+.  +++.+..+..  +...                  +.++.|.+.   
T Consensus       104 ~v~~~--~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------v~~~~~sp~---  160 (450)
T 2vdu_B          104 YIRNL--RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR------------------PNAISIAED---  160 (450)
T ss_dssp             CEEEE--EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSC------------------EEEEEECTT---
T ss_pred             ceEEE--EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCC------------------ceEEEEcCC---
Confidence            57555  999999996 889899999999999  8888887763  2333                  445555443   


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEE---EeccCCCCCeEEEEEecC---CCEEEEEecCCcEEEEECCCCceeE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLG  153 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~---~~~~~h~~~V~~l~~sp~---~~~l~s~s~dg~v~iwd~~~~~~~~  153 (612)
                            +.+|++|+.+|.|++|++.++....   ....+|...|++++|+|+   +++|++|+.|++|++||+.+++.+.
T Consensus       161 ------~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          161 ------DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             ------SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             ------CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence                  7899999999999999998876542   133579999999999999   9999999999999999999999888


Q ss_pred             E-EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec-------------------------CCCCEEEE
Q 007234          154 K-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------------------HPGAVRFM  205 (612)
Q Consensus       154 ~-~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~-------------------------h~~~v~~l  205 (612)
                      . +.+|...|.+++|+ ++++|++++  +.|++||+++++++..+..                         +...|.++
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            7 55788999999999 999999998  8999999999998888863                         23579999


Q ss_pred             EEeeCCcEEEEEEcCCCeEEEEEc--CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec------CCcEE
Q 007234          206 TFSDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCY  277 (612)
Q Consensus       206 ~~sp~~~~l~s~s~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~------dg~i~  277 (612)
                      +|+|+++++++++..|+.|++|++  ..+...  ..+..+..+ ..+..+.|+     |++.++++++.      ++.|.
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l--~~~~~~~~~-~~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~  385 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDL--ALKQIITFP-YNVISLSAH-----NDEFQVTLDNKESSGVQKNFAK  385 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSSTTCE--EEEEEEECS-SCEEEEEEE-----TTEEEEEECCTTCCSSCCCSEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCCCCce--eeccEeccC-CceEEEEec-----CCcEEEEEecccCCCCCCcceE
Confidence            999999999998756999999999  443211  133444444 445567776     75444444343      45588


Q ss_pred             EEECC
Q 007234          278 IWYGQ  282 (612)
Q Consensus       278 iwd~~  282 (612)
                      +|.+.
T Consensus       386 v~~~~  390 (450)
T 2vdu_B          386 FIEYN  390 (450)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.8e-26  Score=231.21  Aligned_cols=233  Identities=11%  Similarity=0.058  Sum_probs=178.5

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcEEEEee-ccCCccccccccccccccccccceeEEEe
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTL---------KGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~---------~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      .+|+.+  +|+|+   +++++.|++|++|+..         +++.+..+. +|..                  .+.++.|
T Consensus        77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~  133 (343)
T 3lrv_A           77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN------------------EIIYMYG  133 (343)
T ss_dssp             ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS------------------CEEEEEC
T ss_pred             CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC------------------CEEEEEc
Confidence            356555  88888   9999999999999766         333333332 2222                  3455555


Q ss_pred             eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee-
Q 007234           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-  152 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~-  152 (612)
                      .+.. .      +.++++|+.||.|++||+.+++........|...|++++|+|++.+|++|+.||.|++||+++++.+ 
T Consensus       134 ~~~~-~------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~  206 (343)
T 3lrv_A          134 HNEV-N------TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS  206 (343)
T ss_dssp             CC----------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred             CCCC-C------CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence            5510 0      7889999999999999999999876655556778999999999999999999999999999999988 


Q ss_pred             EEEec-CCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec---CCCCEE--EEEEeeCCcEEEEEEcCCCeEE
Q 007234          153 GKFRA-STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       153 ~~~~~-~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      ..+.. |..+|++++|+|+|.+|++++ +.|++||+++++.+..+..   |...+.  +++|+|+|++|++++..|+.++
T Consensus       207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          207 SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT  286 (343)
T ss_dssp             EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence            78888 899999999999999999998 8999999999876554443   444444  6999999999999873399999


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCC---CCcEEEEEecCCcEEEEE
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY  280 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~t~s~dg~i~iwd  280 (612)
                      +|++......     ...    .....+.|.     +   +...+++++.||.+.++-
T Consensus       287 v~~~~~~~~~-----~~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          287 IYKFDKKTKN-----WTK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEEECTTTCS-----EEE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred             EEEEcccccc-----eEe----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence            9999776532     111    223444454     5   788999999999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.5e-27  Score=244.90  Aligned_cols=249  Identities=14%  Similarity=0.176  Sum_probs=189.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +..|  .+|+|||||++||+++.||.|+|||.++  ++..+. |...+.             ...+.+++|.|.      
T Consensus        85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------  140 (588)
T 2j04_A           85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------  140 (588)
T ss_dssp             SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred             CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence            4567  4569999999999999999999999644  666555 443211             123445555443      


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeE-------EEEe---ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-  151 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~-------~~~~---~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-  151 (612)
                         +++|++|+.||+|++||+.++..       +..+   ..+|.+.|.+++|+|+|  +++++.|++|++||+..++. 
T Consensus       141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred             ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence               88999999999999999998852       3444   26788999999999999  88899999999999988774 


Q ss_pred             --eEEEe-cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEE--eeCCcEEEEEEcCCCeEE
Q 007234          152 --LGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       152 --~~~~~-~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~--sp~~~~l~s~s~~d~~i~  225 (612)
                        .++++ +|...|.+++|+  |+.+|+++ ++|++||+.+++......+|...|..+.|  +|++..+++++ +||+ +
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k  291 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K  291 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred             cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence              35674 677899999999  68888888 99999999988874444489999999999  99998888876 7999 9


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCC
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~  305 (612)
                      +|..+.                     +.++     ||+..+++.  |+++++|+..... +..... ...+.+.. ++|
T Consensus       292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va-~SP  340 (588)
T 2j04_A          292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGIS-LSP  340 (588)
T ss_dssp             EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEE-ECT
T ss_pred             EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEE-ECC
Confidence            999761                     2255     888877664  9999999875444 333433 33333333 788


Q ss_pred             CCcccchhhhcccc
Q 007234          306 SQKSATAAIFAAKL  319 (612)
Q Consensus       306 ~~~~~~~~i~~~~~  319 (612)
                      +|+    .++++..
T Consensus       341 dG~----~lA~~~~  350 (588)
T 2j04_A          341 DGY----SIAIVYD  350 (588)
T ss_dssp             TSS----EEEEEEE
T ss_pred             CCC----EEEEEEe
Confidence            887    5555544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=4.3e-26  Score=237.28  Aligned_cols=239  Identities=9%  Similarity=-0.006  Sum_probs=160.8

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEE-----EeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQT-----EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      .+++++.+||+++.|++|+|||..+++...     .+.+|.+.|.++.|++....           ..+.+        +
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~-----------~~~~d--------~  156 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSA-----------DNRLA--------E  156 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECT-----------TCSEE--------E
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccc-----------ccCCC--------C
Confidence            556677899999999999999999887543     24556665555555432000           00011        6


Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCC-EEEEEecCCcEEEEECCCCceeEEE----------
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF----------  155 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~v~iwd~~~~~~~~~~----------  155 (612)
                      ++|++|+.|++|+|||+.++.....+. +|...|.+++|+|++. +|++|+.|++|++||+++++.....          
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             CEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            799999999999999999888776664 6889999999999875 7999999999999999887654332          


Q ss_pred             ---------------ecCCCCeeEEEEC-CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee--------
Q 007234          156 ---------------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--------  209 (612)
Q Consensus       156 ---------------~~~~~~v~~l~~s-pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp--------  209 (612)
                                     .+|...+.++.|+ |||+.+++++  +++++||+.+++....+..|...+..+.+.|        
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence                           2455678899986 7999999998  8999999998887777776665555444333        


Q ss_pred             -----------CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234          210 -----------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (612)
Q Consensus       210 -----------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i  278 (612)
                                 .+..++++++.|+.|++||+.++...    .....+. ..+..++|+     |||++|++++.+| +.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~----~~~~~~~-~~V~svafs-----pdG~~LA~as~~G-v~l  384 (393)
T 4gq1_A          316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN----SIPIQLG-MPIVDFCWH-----QDGSHLAIATEGS-VLL  384 (393)
T ss_dssp             CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC----EEEEECS-SCEEEEEEC-----TTSSEEEEEESSE-EEE
T ss_pred             CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE----EEecCCC-CcEEEEEEc-----CCCCEEEEEeCCC-eEE
Confidence                       23445555558999999999988654    1222333 456778887     9999999999876 555


Q ss_pred             EEC
Q 007234          279 WYG  281 (612)
Q Consensus       279 wd~  281 (612)
                      |.+
T Consensus       385 vrL  387 (393)
T 4gq1_A          385 TRL  387 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=3.5e-24  Score=222.25  Aligned_cols=240  Identities=10%  Similarity=0.061  Sum_probs=189.7

Q ss_pred             eEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234            9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus         9 l~~~fspdg~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .+++|+|+|+++ ++++.|++|++||..+++.+..+..+. .                  ..++.|.+.         ++
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~------------------v~~~~~spd---------g~   86 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S------------------PQGVAVSPD---------GK   86 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S------------------EEEEEECTT---------SS
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-C------------------ccceEECCC---------CC
Confidence            356999999987 566689999999999999988876433 3                  334455443         56


Q ss_pred             EEE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        88 ~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      .++ +++.++.|++||+.+++.+..+.  +...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+ ..+.++
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence            565 45567999999999999886663  44578999999999987 67888999999999999998888764 457999


Q ss_pred             EECCCCCEEE-EeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCccccceee
Q 007234          166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       166 ~~spdg~~l~-~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      +|+|+|++++ +++  +.|++||+++++.+..+. +...+.+++|+|+++++++++.  .++.|++||+.+++..     
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-----  237 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----  237 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence            9999999884 544  799999999999888776 5567899999999999998874  5899999999887643     


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEE-EEEecCCcEEEEECCCcceecccC
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      ..+..+.. +..+.++     |+++++ ++++.|+.|++||+.+++.+....
T Consensus       238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            33333333 3556676     999877 566789999999999988765443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.8e-24  Score=213.47  Aligned_cols=248  Identities=14%  Similarity=0.085  Sum_probs=178.8

Q ss_pred             EEEEEeCCCcEEEEECCCC---cEEEEeeccCCcccccccccccc------cccc-ccceeEEEeeecccccc-------
Q 007234           19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLE------REHL-SVDYTCMKWLSVDRKKK-------   81 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~------~~~~-~~~~~~~~w~~~~~~~~-------   81 (612)
                      -+++++ ...|++|+..++   +.++++..|..+|..+.+.++..      -|++ ......+++.|.+....       
T Consensus        56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            456666 458999999999   89999999999999999888510      0111 11223333333311100       


Q ss_pred             -----cccCCcEEEEEE---CCCcEEEEEc-CCCeEEEEeccCCCCCeEEEEEec---CCCEEEEEecCCcEEEEECCCC
Q 007234           82 -----RKLGSSLLVLGT---GGGDVLALAV-SAGQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        82 -----~~~~~~~l~~gs---~~g~I~vwd~-~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~s~dg~v~iwd~~~~  149 (612)
                           ....+..++..+   .++.|++|++ .+|+.+..+ .+|...++.++|+|   ++..|++++.|++|++||+.+|
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG  213 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG  213 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence                 000122333333   3888999999 447766555 47899999999999   7799999999999999999999


Q ss_pred             ceeEEEecCCC---CeeEEEECCCCCEEE------------EeC--CeEEEEEcCCCeeEEEE-----ecCCCCEEEEEE
Q 007234          150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF  207 (612)
Q Consensus       150 ~~~~~~~~~~~---~v~~l~~spdg~~l~------------~~~--g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~  207 (612)
                      ++++++.+|..   .+.+++|+|+|++++            +|+  ++|++||..+++.+..+     .+|...+.+..+
T Consensus       214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~  293 (356)
T 2w18_A          214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV  293 (356)
T ss_dssp             CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred             cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence            99999987543   677889999999874            344  69999999999987765     377766554444


Q ss_pred             eeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       208 sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      +  +.++++++ .|++|+|||+.+++..     ..+. |...++..++|+     |||++|++|+.|++|++||+
T Consensus       294 s--g~~lASgS-~DgTIkIWDl~tGk~l-----~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 K--DHCAAAIL-TSGTIAIWDLLLGQCT-----ALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             E--TTEEEEEE-TTSCEEEEETTTCSEE-----EEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred             C--CCEEEEEc-CCCcEEEEECCCCcEE-----EEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence            4  77888877 7999999999998743     4554 444455567887     99999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=6.9e-25  Score=224.71  Aligned_cols=276  Identities=10%  Similarity=0.002  Sum_probs=196.1

Q ss_pred             EEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC-CeEE
Q 007234           31 IWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLK  109 (612)
Q Consensus        31 iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~-~~~~  109 (612)
                      .|+....+.+..+.+|.+.+.++.|+++                  ...      +.++++|+.||.|++||+.+ +..+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------~~~------g~~l~~~~~dg~i~iw~~~~~~~~~   78 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPP------------------TLP------GNFLIAGSWANDVRCWEVQDSGQTI   78 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCT------------------TSS------SEEEEEEETTSEEEEEEECTTSCEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCC------------------CCC------ceEEEEECCCCcEEEEEcCCCCcee
Confidence            3455566677777777776665555554                  110      37899999999999999998 6665


Q ss_pred             EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEE--CCCCCEEEEeC--CeEEEEE
Q 007234          110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA--GQLKTFN  185 (612)
Q Consensus       110 ~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--spdg~~l~~~~--g~i~lwd  185 (612)
                      .....+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|  +|+++++++++  |.|++||
T Consensus        79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred             EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence            45557899999999999999999999999999999999988776 4558899999999  99999999887  8999999


Q ss_pred             cCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec-CCccCCCC
Q 007234          186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID-NGGVDDAG  264 (612)
Q Consensus       186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  264 (612)
                      +++++.+..+..|. .+.++.+.+  ..+++++ .++.+.+|++.......   ............+..+. ...  ...
T Consensus       158 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~  228 (368)
T 3mmy_A          158 TRSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AERGLIVYQLENQPSEF---RRIESPLKHQHRCVAIFKDKQ--NKP  228 (368)
T ss_dssp             SSCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GGGCEEEEECSSSCEEE---EECCCSCSSCEEEEEEEECTT--SCE
T ss_pred             CCCCcEEEEEecCC-CceEEEecC--CeeEEEe-CCCcEEEEEeccccchh---hhccccccCCCceEEEcccCC--CCC
Confidence            99999999888665 566666664  4677776 69999999998765331   11111111112222222 000  112


Q ss_pred             cEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEE
Q 007234          265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK  344 (612)
Q Consensus       265 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~  344 (612)
                      ..+++++.||.|++|++.........    .....        .          .                  .......
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~~~~----~~~~~--------~----------~------------------~~~~~~~  268 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPAKDN----FTFKC--------H----------R------------------SNGTNTS  268 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHHHHS----EEEEC--------S----------E------------------EC----C
T ss_pred             CeEEEecCCCcEEEEecCCCCccccc----eeeee--------e----------e------------------ccccccc
Confidence            33999999999999998766321100    00000        0          0                  0000012


Q ss_pred             eeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          345 ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       345 ~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      ...|...|.+++|+|||++| ++++.|+.+++|++.+
T Consensus       269 ~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             CCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred             ccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence            23455689999999999999 9999999999999854

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=3.4e-25  Score=218.62  Aligned_cols=210  Identities=11%  Similarity=0.060  Sum_probs=157.8

Q ss_pred             cccceeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEE-eeccCCcccccccccccccccc-------ccceeEE
Q 007234            4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHL-------SVDYTCM   71 (612)
Q Consensus         4 ~~V~~l~~~fspd----g~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~   71 (612)
                      .+|+.|  +||||    ++++++++.+  +++|++.+++.+.. ..+|...+....++++   |..       +...+.+
T Consensus       112 ~~v~sl--a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~~v~~l  184 (356)
T 2w18_A          112 REIRAL--FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPPEETIL  184 (356)
T ss_dssp             EEEEEE--CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCCSSCEE
T ss_pred             cceEEE--EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCC---CceeeeeccCCCceeeE
Confidence            467767  99999    9999998843  77888888887776 4677777777777665   211       2334455


Q ss_pred             EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCC--CCCeEEEEEecCCCEE------------EEEec
Q 007234           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGA  137 (612)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l------------~s~s~  137 (612)
                      .|.+.+..      +.+|++|+.|++|+|||+.+|+++..+..+|  ...+.+++|+|+|+++            ++|+.
T Consensus       185 ~fs~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          185 TFAEVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             EEEEEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             EeeccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            66653333      7899999999999999999999998875332  3468888999999876            56788


Q ss_pred             CCcEEEEECCCCceeEEEe-----cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEE-EEEEee
Q 007234          138 DGMVCEIDPLTGSLLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSD  209 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~-~l~~sp  209 (612)
                      |++|++||..+++.+..+.     +|...+.+..+  ++.++++++  ++|+|||+.+++++.++.+|...+. +++|+|
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence            9999999999999887652     45444444444  378899887  8999999999999999999987655 589999


Q ss_pred             CCcEEEEEEcCCCeEEEEEc
Q 007234          210 NGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~  229 (612)
                      ||++|++++ .|++|+|||+
T Consensus       337 DG~~LaSGS-~D~TIklWd~  355 (356)
T 2w18_A          337 TDSHLLAGQ-KDGNIFVYHY  355 (356)
T ss_dssp             SSSEEEEEC-TTSCEEEEEE
T ss_pred             CCCEEEEEE-CCCcEEEecC
Confidence            999999997 7999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=3.4e-24  Score=231.64  Aligned_cols=326  Identities=8%  Similarity=-0.031  Sum_probs=229.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      +|+|++.++++++.|++|.+||..+++++.++..... +..+.|+++                           ++++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v  195 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV  195 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence            6899999999999999999999999999998873222 334444444                           889999


Q ss_pred             EECCCcEEEEEc--CCCeEEEEeccCCCCCeEEEEEec----CCCEEEEEe-cCCcEEEEECCCCceeEEEecC------
Q 007234           92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------  158 (612)
Q Consensus        92 gs~~g~I~vwd~--~~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~------  158 (612)
                      ++.++.|.+||+  .+++++.++.  +...+..++|+|    +|+++++++ .+++|.+||..+++++..+..+      
T Consensus       196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence            999999999999  8888887774  456789999999    999999988 4899999999999999888652      


Q ss_pred             -----CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          159 -----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       159 -----~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                           ...+.++.++|++..+++..   +.|.+||+.+.+.+.  .+. +...+..+.|+|+|+++++++..+++|.+||
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                 23789999999887766553   899999998875443  443 5667888999999999888776789999999


Q ss_pred             cCCCccccceeeEeecCCceeEEeEEecCCccCCC-CcEEEEEe-cCCcEEEEECCC-------cceecccCCceeEeec
Q 007234          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKILSSS  299 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~t~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~  299 (612)
                      +.+++......+....|+......  +.     |+ +..++++. .|++|.+||..+       ++.++.++....... 
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~~--~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~-  424 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGANF--VH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL-  424 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEEE--EE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-
T ss_pred             CCCCeEEEeeccCCCCCCCCCccc--CC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce-
Confidence            999875411111111233323221  33     66 56666665 589999999988       666655543321111 


Q ss_pred             ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEe--------eccCCCeEEEEecCCCceEeccc---
Q 007234          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ---  368 (612)
Q Consensus       300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~l~~S~dg~~l~~s~---  368 (612)
                      ...++|+++    .+.++..-+--.-.+..+.+.+-......++.+        ..+...+..+.|+|||+++.++.   
T Consensus       425 ~v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          425 FIKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             CEECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             EEEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence            122678877    555554210000012334444433222223343        24566799999999999984442   


Q ss_pred             -cceeeecceeee
Q 007234          369 -SLLKSKRGRYVQ  380 (612)
Q Consensus       369 -s~d~~~~~w~~~  380 (612)
                       +.|+.+.+|+..
T Consensus       501 ~~~~~~i~v~D~~  513 (543)
T 1nir_A          501 KNDSSALVVVDDK  513 (543)
T ss_dssp             TTSCCEEEEEETT
T ss_pred             CCCCCeEEEEECC
Confidence             358999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=3e-24  Score=220.16  Aligned_cols=232  Identities=13%  Similarity=0.100  Sum_probs=174.2

Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++++++++++ +++.|++|+|||..+++.+..+. +...+.                  ++.|.           ...+
T Consensus        64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~------------------~v~~~-----------~~~~  113 (355)
T 3vu4_A           64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVK------------------DLFLS-----------REFI  113 (355)
T ss_dssp             EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEE------------------EEEEC-----------SSEE
T ss_pred             EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceE------------------EEEEc-----------CCEE
Confidence            48899998885 56678999999999999988875 333333                  33332           2233


Q ss_pred             EEEECCCcEEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEE--EecCCcEEEEECCCCc----------------
Q 007234           90 VLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS----------------  150 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s--~s~dg~v~iwd~~~~~----------------  150 (612)
                      +++ .++.|++||+.++ +.+..+..    +...+++++  ..++.  |+.||.|++||+.+++                
T Consensus       114 ~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p  186 (355)
T 3vu4_A          114 VVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG  186 (355)
T ss_dssp             EEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred             EEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCc
Confidence            443 4788999999988 55544321    455566777  56665  5789999999998865                


Q ss_pred             eeEEEecCCCCeeEEEECCCCCEEEEeC--Ce-EEEEEcCCCeeEEEEe-c-CCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       151 ~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~-i~lwd~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      .+..+.+|...|.+++|+|+|++|++++  |+ |++||+++++++..+. + |...|.+++|+|+|++|++++ .|++|+
T Consensus       187 ~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v~  265 (355)
T 3vu4_A          187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTLH  265 (355)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEEE
T ss_pred             ccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEEE
Confidence            2788899999999999999999999998  87 9999999999999998 6 999999999999999999998 799999


Q ss_pred             EEEcCCCcccccee-----------------eEeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          226 LWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       226 vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      +||+..........                 .+.+.. .......++|+     ++++++++++.||.+++|++..++
T Consensus       266 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          266 VFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCC
Confidence            99998754221100                 000110 01111345666     999999999999999999976554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-23  Score=219.47  Aligned_cols=311  Identities=8%  Similarity=-0.031  Sum_probs=217.5

Q ss_pred             ccceeEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCcEE--EEeeccCCccccccccccc-----ccccccc
Q 007234            5 NIRDILTSFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRL-----EREHLSV   66 (612)
Q Consensus         5 ~V~~l~~~fspdg~-~las~s----~dg----~i~iwd~--~~~~~~--~~~~~~~~~~~~~~~s~~~-----~~~~~~~   66 (612)
                      +|+..  +|++.|. ++++|+    .||    +|++||+  .+++++  ..+.+|...+....+...-     ..+... 
T Consensus        64 ~~~~~--~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~-  140 (415)
T 2hqs_A           64 EVQPA--AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG-  140 (415)
T ss_dssp             GCCHH--HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC-
T ss_pred             CcCHH--HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC-
Confidence            44444  7888875 666776    468    8999999  999977  4577777766655554310     000000 


Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-  139 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-  139 (612)
                              .+         +..++.++.+      +.|++||+..+.. ..+ .+|...|.+++|+|+|+.|++++.++ 
T Consensus       141 --------~~---------~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~  201 (415)
T 2hqs_A          141 --------AF---------RTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESG  201 (415)
T ss_dssp             --------CT---------TCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTS
T ss_pred             --------cC---------CCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCC
Confidence                    00         3345554443      6899999985543 344 46889999999999999999999875 


Q ss_pred             --cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE-EeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc
Q 007234          140 --MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK  212 (612)
Q Consensus       140 --~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~  212 (612)
                        .|++||+.+++.. .+..+...+.+++|+|||+.|+ +++    ..|++||+.+++. ..+..|...+.+++|+|||+
T Consensus       202 ~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~  279 (415)
T 2hqs_A          202 RSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ  279 (415)
T ss_dssp             SCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS
T ss_pred             CcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC
Confidence              9999999998875 4666778899999999999888 554    3699999998875 56778899999999999999


Q ss_pred             EEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCCccee
Q 007234          213 YVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEEL  287 (612)
Q Consensus       213 ~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~~~~~  287 (612)
                      +|++++..++  .|.+||+.+++..      .+..+...+....|+     |+|++|++++.+   +.|++||+.+++..
T Consensus       280 ~l~~~s~~~g~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          280 NLAFTSDQAGRPQVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             EEEEEECCCCCcEEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            9998874345  6778888876532      122233345566777     999999988864   58999999988664


Q ss_pred             cccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCce
Q 007234          288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL  363 (612)
Q Consensus       288 ~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~  363 (612)
                      .-... . .+.+. .++|+++    .++.++.++.    ...+.+.+-  .....+.+..|.+.|.+++|||.-.+
T Consensus       349 ~l~~~-~-~~~~~-~~spdg~----~l~~~s~~~~----~~~l~~~d~--~g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          349 VLSST-F-LDETP-SLAPNGT----MVIYSSSQGM----GSVLNLVST--DGRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             ECCCS-S-SCEEE-EECTTSS----EEEEEEEETT----EEEEEEEET--TSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             EecCC-C-CcCCe-EEcCCCC----EEEEEEcCCC----ccEEEEEEC--CCCcEEEeeCCCCCCcCCcccccccc
Confidence            32221 1 12222 3788888    6777665531    113333331  13345577889899999999997543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=3.9e-23  Score=217.41  Aligned_cols=236  Identities=10%  Similarity=0.068  Sum_probs=188.5

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..|..+  +|+|+|+++++++.|+.|++||+.+++.+..+..+...+.++.|+++                         
T Consensus       170 ~~v~~~--~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  222 (433)
T 3bws_A          170 GFVETI--SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI-------------------------  222 (433)
T ss_dssp             CEEEEE--EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT-------------------------
T ss_pred             CceeEE--EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC-------------------------
Confidence            456444  99999999999999999999999999999888766555544444443                         


Q ss_pred             cCCcEEE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe--------cCCcEEEEECCCCceeEE
Q 007234           84 LGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        84 ~~~~~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--------~dg~v~iwd~~~~~~~~~  154 (612)
                        +..++ +++.+|.|++||+.+++.+..+.  +...+.+++|+|+++.+++++        .|+.|++||+.+++.+..
T Consensus       223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~  298 (433)
T 3bws_A          223 --RDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT  298 (433)
T ss_dssp             --TTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred             --CCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence              55564 55578999999999999876663  345699999999999999988        488999999999988777


Q ss_pred             EecCCCCeeEEEECCCCCEEEEe-C--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC-----------
Q 007234          155 FRASTKGISCMAVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----------  220 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~-----------  220 (612)
                      +. +...+.+++|+|+++.++++ +  +.|++||+++++.+..+. +...+.+++|+|+|+++++++..           
T Consensus       299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred             cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence            64 44578999999999866544 4  899999999999888876 77889999999999988887743           


Q ss_pred             ---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCC
Q 007234          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (612)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~  283 (612)
                         ||.|++||+.+++..     ..+.... .+..+.|+     |+|++|++++. |+.|++|+++.
T Consensus       377 g~~dg~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          377 GLVLGKVYVIDTTTDTVK-----EFWEAGN-QPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CSSCCEEEEEETTTTEEE-----EEEECSS-SEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred             cccceEEEEEECCCCcEE-----EEecCCC-CCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence               469999999887643     2333333 35667777     99999998875 99999999753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=7e-23  Score=231.05  Aligned_cols=341  Identities=9%  Similarity=0.033  Sum_probs=216.4

Q ss_pred             cccceeEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCcEEEEeeccCCccccccccccccc----cccc--cceeEE
Q 007234            4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLER----EHLS--VDYTCM   71 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~--~~~~~~   71 (612)
                      ..|..+  +|||||++||+++. ||     .|++||+.+++....+..+........++.....    .+..  .....+
T Consensus        37 ~~~~~~--~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           37 PTLMKP--KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCEEE--EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCc--eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            356445  99999999999998 88     8999999999987776544322000000000000    0000  113344


Q ss_pred             EeeecccccccccCCcEEEEEECCCcEEEEEcCCC---eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~  148 (612)
                      .|.+.         ++.|++++. +.|++||+.++   ... .+ ..|...+.+++|+|||++|+.++ ++.|++||+.+
T Consensus       115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence            45443         778888887 99999999988   443 33 45778899999999999999887 56899999998


Q ss_pred             CceeEEEecCCCC----------------eeEEEECCCCCEEEEeC--C-------------------------------
Q 007234          149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G-------------------------------  179 (612)
Q Consensus       149 ~~~~~~~~~~~~~----------------v~~l~~spdg~~l~~~~--g-------------------------------  179 (612)
                      ++.......+...                +.+++|+|||++|++++  +                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            8766554433332                47899999999998875  3                               


Q ss_pred             --eEEEEEcCC-CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEc----CCCeEEEEEcCCCccccceeeEeecCCce--
Q 007234          180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV--  248 (612)
Q Consensus       180 --~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--  248 (612)
                        .|++||+.+ ++......  .|...+..++| |||++|++++.    .+..|++||+.+++..   .+........  
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~  337 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP  337 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence              889999998 87654433  47788999999 99999987753    2568999999988644   2222211111  


Q ss_pred             eEEeEEecCCccCCCCcEEEEEecCCcEEEEECC-CcceecccCCceeEeecccccCCCCcccchhhh-cccccceecCC
Q 007234          249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIF-AAKLQDIVKPA  326 (612)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~-~~~~d~~~~~~  326 (612)
                      .+....|+     |||+++++++.||.+++|.+. ++. ..........+.....++++++    .++ ++..++   ..
T Consensus       338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~---~~  404 (741)
T 2ecf_A          338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIES---AR  404 (741)
T ss_dssp             CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSC---TT
T ss_pred             cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCC---Cc
Confidence            22345666     999999999999988888764 233 3333332222222212677776    443 333332   00


Q ss_pred             CceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccce---eeecceee
Q 007234          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYV  379 (612)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d---~~~~~w~~  379 (612)
                      ...++.....  ....+.+.. ...+..++|||||++++++.+..   ..+.+++.
T Consensus       405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            1122322210  111223433 45688999999999985554432   34555554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=8.7e-21  Score=193.41  Aligned_cols=238  Identities=13%  Similarity=0.089  Sum_probs=181.9

Q ss_pred             EEEEcCCCCEEEEEeC-------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234           10 LTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        10 ~~~fspdg~~las~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .++|+|+|+++++++.       ++.|.+||..+++.+..+... ..+..                  +.|.+.      
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~------------------~~~s~d------   99 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFG------------------ATINNT------   99 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCS------------------EEEETT------
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcce------------------EEECCC------
Confidence            3499999998888774       568999999999988877532 22223                  333332      


Q ss_pred             ccCCcEEE-EEECCCcEEEEEcCCCeEEEEeccCCCC--------CeEEEEEecCCCEEEEEe--cCCcEEEEECCCCce
Q 007234           83 KLGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSL  151 (612)
Q Consensus        83 ~~~~~~l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~--------~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~  151 (612)
                         ++.++ ++..++.|.+||+.+++.+..+..++..        .+.+++|+|+|+.+++++  .++.|.+||..+++.
T Consensus       100 ---g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          100 ---TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             ---TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred             ---CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence               55444 4555788999999999987776432222        278999999999887776  478999999999999


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec----CCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      +..+..+...+.+++|+|+|+++++++  +.|.+||..+++.+..+..    +...+..++|+|+|+++++++..++.|.
T Consensus       177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  256 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL  256 (353)
T ss_dssp             EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred             EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence            888875566688999999999998887  8999999999998887764    5667889999999998888775669999


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCccee
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEEL  287 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~  287 (612)
                      +||+.+++..   .......+    ..+.++     |+|+++++++ .++.|.+||..+++.+
T Consensus       257 ~~d~~~~~~~---~~~~~~~~----~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          257 VVDTRNGNIL---AKVAAPES----LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             EEETTTCCEE---EEEECSSC----CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEECCCCcEE---EEEEcCCC----ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            9999887644   12222221    345666     8998766665 6899999998877654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.6e-21  Score=197.34  Aligned_cols=287  Identities=9%  Similarity=0.059  Sum_probs=195.7

Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        12 ~fspdg~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      .|++++++ +++++.++.|++||..+++....+..+.... .+.|+++                           ++.++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~d---------------------------g~~l~   55 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSD---------------------------CSNVV   55 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSS---------------------------SCEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCC---------------------------CCEEE
Confidence            57777665 6677779999999999999988776433322 3333333                           66566


Q ss_pred             EEEC-CCcEEEEEcCCCeE-EEEeccCCCCCeEEEEEecCCCEEEEEecCC---cEEEEECCCCceeEEEecCCCCeeEE
Q 007234           91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        91 ~gs~-~g~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      +++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+ ..+.++
T Consensus        56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~  133 (331)
T 3u4y_A           56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI  133 (331)
T ss_dssp             EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred             EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence            5555 78899999999987 5444 44566666699999999999555543   8999999999988887753 456999


Q ss_pred             EECCCCCEEEEeC---Ce-EEEEEcCCCeeE----EEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       166 ~~spdg~~l~~~~---g~-i~lwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      +|+|||+++++++   +. |.+|++.....+    .....+...+..++|+|+|++++.++..++.|.+||+.+++... 
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-  212 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-  212 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence            9999998766654   67 999998764332    12223445678999999999877776678999999998876510 


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                       .+..+... .....+.|+     |+|+++++++ .++.|.+||..+++.....     .....  ...+..        
T Consensus       213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~~--~~~~~~--------  270 (331)
T 3u4y_A          213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGHG--LLIDPR--------  270 (331)
T ss_dssp             -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEECC--CCCCCG--------
T ss_pred             -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----ccccc--cccCCC--------
Confidence             12233333 233456676     9999877765 4778999999887652100     00000  000000        


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeecc
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                                                     .......++|+|||++|.++++.++.+.+|++...
T Consensus       271 -------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          271 -------------------------------PLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             -------------------------------GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             -------------------------------CcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence                                           00122457899999988677777889999998543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=2.2e-22  Score=226.30  Aligned_cols=317  Identities=9%  Similarity=0.045  Sum_probs=208.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCC---ccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS---TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      +++|||||+++++ +.||+|++||+.+++....+..+..   .+....|+++                           +
T Consensus        21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpD---------------------------g   72 (723)
T 1xfd_A           21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD---------------------------R   72 (723)
T ss_dssp             CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT---------------------------S
T ss_pred             ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCC---------------------------C
Confidence            4499999998876 7899999999999998877765543   2444455554                           7


Q ss_pred             cEEEEEECC---------CcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           87 SLLVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        87 ~~l~~gs~~---------g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                      ++|++++.+         +.|.+||+.+++.. .+.  .+|...+..++|+|||+.|+.++. +.|++||+.+++.....
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence            888888774         67889999998762 332  345556899999999999999875 79999999998877666


Q ss_pred             ecCCCCe------------------eEEEECCCCCEEEEeC--C----------------------------------eE
Q 007234          156 RASTKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QL  181 (612)
Q Consensus       156 ~~~~~~v------------------~~l~~spdg~~l~~~~--g----------------------------------~i  181 (612)
                      ..+...+                  .+++|+|||+.|++++  +                                  .|
T Consensus       151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            5544333                  7899999999999875  2                                  79


Q ss_pred             EEEEcCCCeeEEEEecC------CCCEEEEEEeeCCcEEEEEEcC---CCeEEEEEcCCCccccceeeEeecCCceeE--
Q 007234          182 KTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFM--  250 (612)
Q Consensus       182 ~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~s~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--  250 (612)
                      ++||+.+++....+..+      ...+..++|+|||+++++.+..   +..|++||+.+++..   .+....+.....  
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~  307 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQ  307 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEecc
Confidence            99999998865666654      5678999999999988766422   357999999887643   222222222111  


Q ss_pred             -EeEEecCCccCCCCcEEEEE--ecCC------cEEEEE-CCCcce--ecccCCceeEeecccccCCCCcccchhhhccc
Q 007234          251 -DCRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAK  318 (612)
Q Consensus       251 -~~~~~~~~~~~~~~~~l~t~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~  318 (612)
                       ....|+     |||+.|+..  ..+|      .|.+|| ..+++.  ..........+.....++|+++    .|+..+
T Consensus       308 ~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~  378 (723)
T 1xfd_A          308 NEEPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLS  378 (723)
T ss_dssp             CCCCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEE
T ss_pred             CCCceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEE
Confidence             245666     999977754  4566      577777 344431  3322221111111123788888    554443


Q ss_pred             ccceecCCCceEEEEeCCccCceEEEeec---cCCCeEEEEecCCCceEeccccce
Q 007234          319 LQDIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL  371 (612)
Q Consensus       319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~l~~S~dg~~l~~s~s~d  371 (612)
                      .++.  .....++...-.. ......+..   |...+..++|||||++++++.+.+
T Consensus       379 ~~~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          379 TEDL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             SSSC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             cCCC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            3210  0112233332110 001112332   566688999999999886655443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=4.6e-21  Score=207.13  Aligned_cols=274  Identities=10%  Similarity=0.053  Sum_probs=203.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC--CCCceeEEEecCCCCee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~~v~  163 (612)
                      +.++++++.++.|.+||..+++++..+..+|.  +.+++|+|+|++|++++.|++|++||+  .+++.+.++.. ...+.
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~  225 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEAR  225 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEE
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcc
Confidence            67788888999999999999999888754554  899999999999999999999999999  88999888884 45679


Q ss_pred             EEEECC----CCCEEEEeC---CeEEEEEcCCCeeEEEEecC----------C-CCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------P-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       164 ~l~~sp----dg~~l~~~~---g~i~lwd~~~~~~~~~~~~h----------~-~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      .++|+|    ||+++++++   ++|.+||..+++++..+..+          . ..+.++.++|++..++.+...++.|.
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~  305 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  305 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence            999999    999999887   89999999999999888652          2 37899999998887777666899999


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccCCceeEee--cccc
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSS--SEDV  302 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~  302 (612)
                      +||+.+.+..   .+..+.+ ...+..+.|+     |+|+++++++ .+++|.+||..+++.+.........-.  ....
T Consensus       306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred             EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence            9999886543   1223332 3334556676     9999877665 588999999999987764432110000  0000


Q ss_pred             cCCCCcccchhhhcccccceecCCCceEEEEeCCc------cCceEEEeeccCCCeEEEEecCCCceEecccc-------
Q 007234          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-------  369 (612)
Q Consensus       303 ~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s-------  369 (612)
                      +.|++..   .++++...      ++.+.+.+-..      ...+.+++..|...+..+.++|||++| .+++       
T Consensus       377 ~~p~~g~---~~~s~~~~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~~  446 (543)
T 1nir_A          377 VHPKYGP---VWSTSHLG------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDAR  446 (543)
T ss_dssp             EETTTEE---EEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSHH
T ss_pred             CCCCCcc---EEEeccCC------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCcc
Confidence            1233221   33443321      23333333221      256788999998889999999999999 6665       


Q ss_pred             ceeeecceeeec
Q 007234          370 LLKSKRGRYVQN  381 (612)
Q Consensus       370 ~d~~~~~w~~~~  381 (612)
                      .+.++.+|++.+
T Consensus       447 ~~~~v~v~d~~~  458 (543)
T 1nir_A          447 ISQSVAVFDLKN  458 (543)
T ss_dssp             HHTCEEEEETTC
T ss_pred             cCceEEEEECCC
Confidence            378999999853

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=1.5e-20  Score=196.67  Aligned_cols=225  Identities=15%  Similarity=0.125  Sum_probs=174.5

Q ss_pred             CCEEEEEeCC------CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        17 g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      +..++.++.+      ++|++||+.. .....+..|...+.++.|+++                           ++.|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd---------------------------g~~la  194 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD---------------------------GSKLA  194 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT---------------------------SSEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC---------------------------CCEEE
Confidence            6677776654      7999999974 445666666666665556555                           78899


Q ss_pred             EEECCC---cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCc--EEEEECCCCceeEEEecCCCCeeE
Q 007234           91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        91 ~gs~~g---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      .++.++   .|++||+.+++.. .+ ..|...+.+++|+|||+.|+ +++.|+.  |++||+.+++. ..+..+...+.+
T Consensus       195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~  271 (415)
T 2hqs_A          195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE  271 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred             EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence            998875   7999999999875 33 45788999999999999877 6666654  99999988876 566677788999


Q ss_pred             EEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC--CCeEEEEEcCCCccccc
Q 007234          165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA  237 (612)
Q Consensus       165 l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~--d~~i~vwd~~~~~~~~~  237 (612)
                      ++|+|||++|++++   +  .|++||+.+++. ..+..|...+.+++|+|+|++|++++..  +..|.+||+.+++..  
T Consensus       272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--  348 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--  348 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred             eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence            99999999888765   2  789999988864 4556677889999999999999988743  258999999987643  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcc
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE  285 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~  285 (612)
                          .+..+. .+....|+     |+|++|++++.++   .|++||+..+.
T Consensus       349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCCc
Confidence                222222 45667777     9999999998877   79999987543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=1.9e-21  Score=218.13  Aligned_cols=338  Identities=9%  Similarity=0.029  Sum_probs=206.6

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeeccCCccccccccccccc-cccccceeEEEeeeccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLER-EHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      .+..+  .|+  |+.+++++.|| | +||+.+|+.+ ..+..+....  ..++..... ........++.|.+.      
T Consensus        27 ~~~~~--~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~~v~~~~~spd------   92 (706)
T 2z3z_A           27 YVVGL--QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLN--ALMPEGCKFQTTDAFPSFRTLDAGR------   92 (706)
T ss_dssp             -CTTC--EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHH--TTC-----------CCCEEEEETTT------
T ss_pred             cCCCC--cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhh--hhccchhccccccccCceeEEECCC------
Confidence            34455  788  66777788888 8 9999999873 3332221100  000000000 000123556666553      


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-----CceeEEEec
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRA  157 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~  157 (612)
                          ..++.+ .++.|++||+.+++.....  .+...+.+++|+|||+.|+++ .|+.|++||+.+     ++.......
T Consensus        93 ----~~~~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~  164 (706)
T 2z3z_A           93 ----GLVVLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID  164 (706)
T ss_dssp             ----TEEEEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred             ----CeEEEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccC
Confidence                223443 4599999999998775433  466788999999999999885 689999999998     776554443


Q ss_pred             CCCC--------------eeEEEECCCCCEEEEeC-----------------------------------CeEEEEEcCC
Q 007234          158 STKG--------------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSD  188 (612)
Q Consensus       158 ~~~~--------------v~~l~~spdg~~l~~~~-----------------------------------g~i~lwd~~~  188 (612)
                      +...              +.+++|+|||++|++++                                   ..|++||+.+
T Consensus       165 ~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          165 GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            3332              48999999999998874                                   5799999999


Q ss_pred             CeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCC-----eEEEEEcCCCccccceeeEeecCCce--eEEeEEecCCc
Q 007234          189 HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGG  259 (612)
Q Consensus       189 ~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  259 (612)
                      ++......  .|...+.+++|+|||+++++++ .++     .|.+||+.+++...  .+....+...  .+..+.|+   
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~s---  318 (706)
T 2z3z_A          245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVR--TLFVETDKHYVEPLHPLTFL---  318 (706)
T ss_dssp             TEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEE--EEEEEECSSCCCCCSCCEEC---
T ss_pred             CceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceee--EEEEccCCCeECccCCceee---
Confidence            87654432  4667899999999999998876 455     89999999873221  1222112111  12345666   


Q ss_pred             cCC--CCcEEEEEecCCcEEEEECC-CcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCC
Q 007234          260 VDD--AGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL  336 (612)
Q Consensus       260 ~~~--~~~~l~t~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~  336 (612)
                        |  ||+++++++.||.+++|.+. ++..+.........+.....++|+++    .++.++.+..  .....++..+..
T Consensus       319 --p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~  390 (706)
T 2z3z_A          319 --PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIK  390 (706)
T ss_dssp             --TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETT
T ss_pred             --cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcC
Confidence              8  99999999999999999876 45544444333222222123678877    4444333210  001233333321


Q ss_pred             ccCceEEEeeccCCCeEEEEecCCCceEeccccce---eeecceeeec
Q 007234          337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQN  381 (612)
Q Consensus       337 ~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d---~~~~~w~~~~  381 (612)
                      ..  ..+.+ .|...+.+++|||||++++++++.+   ..+.+|+...
T Consensus       391 ~~--~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          391 GG--KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             CC--CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             CC--Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            11  11222 3666789999999999984554433   4588888643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.4e-20  Score=190.36  Aligned_cols=265  Identities=12%  Similarity=0.064  Sum_probs=194.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCC--ccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEEC
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG   94 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~   94 (612)
                      ++|++++.+++|.+||..+++.+..+.....  .+..+.|+++                           ++.+ +++..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d---------------------------g~~l~v~~~~   54 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG---------------------------GRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT---------------------------SSEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC---------------------------CCEEEEEeCC
Confidence            4789999999999999999998887753221  2333333333                           5444 55556


Q ss_pred             CCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe------------cCCcEEEEECCCCceeEEEecC
Q 007234           95 GGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      ++.|.+||+.+++.+..+..++    ...+.+++|+|+|+.+++++            .++.|.+||+.+++.+..+.. 
T Consensus        55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-  133 (337)
T 1pby_B           55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence            7889999999999876664333    22678899999999998886            579999999999988887775 


Q ss_pred             CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCC--CCEEEEEEeeCCcEEEEEEcCCC--------------
Q 007234          159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGER--------------  222 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~l~s~s~~d~--------------  222 (612)
                      ...+.+++|+|+|++++++++.|++||+.+++....+..+.  .+   +.|+|++++++.++..++              
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence            45678899999999999889999999999999888776544  33   378999987766543333              


Q ss_pred             ---------eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc
Q 007234          223 ---------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (612)
Q Consensus       223 ---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~  293 (612)
                               .|.+||+.+++..    .............+.++     |+|++++++  ++.|.+||+.+++.+...   
T Consensus       211 ~~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~---  276 (337)
T 1pby_B          211 PADPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRV---  276 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEE---
T ss_pred             cccccccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCccee---
Confidence                     4689999887643    12222222334456776     999999888  799999998776543210   


Q ss_pred             eeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceee
Q 007234          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (612)
Q Consensus       294 ~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~  373 (612)
                                                                          .. ...+.+++|+|||++| ++++.++.
T Consensus       277 ----------------------------------------------------~~-~~~~~~~~~s~dg~~l-~~~~~~~~  302 (337)
T 1pby_B          277 ----------------------------------------------------PL-PHSYYSVNVSTDGSTV-WLGGALGD  302 (337)
T ss_dssp             ----------------------------------------------------EC-SSCCCEEEECTTSCEE-EEESBSSE
T ss_pred             ----------------------------------------------------cC-CCceeeEEECCCCCEE-EEEcCCCc
Confidence                                                                00 0145678899999988 66677999


Q ss_pred             ecceeeec
Q 007234          374 KRGRYVQN  381 (612)
Q Consensus       374 ~~~w~~~~  381 (612)
                      +++|+...
T Consensus       303 i~v~d~~~  310 (337)
T 1pby_B          303 LAAYDAET  310 (337)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECcC
Confidence            99998743

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=5e-20  Score=186.73  Aligned_cols=272  Identities=14%  Similarity=0.161  Sum_probs=178.7

Q ss_pred             EEEEEeCCCcEEEEECC-CCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           19 YFAICSGDARIKIWDTL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      .+++++.|+.|++||+. +++  .+..+. +...+..                  +.|.+.         ++++++++.+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~spd---------g~~l~~~~~~   58 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQP------------------MVVSPD---------KRYLYVGVRP   58 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCC------------------EEECTT---------SSEEEEEETT
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCCCCce------------------EEECCC---------CCEEEEeecC
Confidence            34444779999999985 343  233332 3333333                  444332         7778888776


Q ss_pred             -CcEEEEEcC--CCeE--EEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECC---CCceeEEEecCCCCeeEEE
Q 007234           96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        96 -g~I~vwd~~--~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~  166 (612)
                       +.|.+|++.  ++..  +..+ ..+ ..+.+++|+|+++++++++. ++.|.+||+.   .++....+.. ...+.+++
T Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~  135 (343)
T 1ri6_A           59 EFRVLAYRIAPDDGALTFAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSAN  135 (343)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCE
T ss_pred             CCeEEEEEecCCCCceeecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEE
Confidence             899999998  5553  2333 223 37899999999998877664 8899999994   3344445543 34688999


Q ss_pred             ECCCCCEEEEeC---CeEEEEEcCC-CeeEE----EEec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC--Cccc
Q 007234          167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ  235 (612)
Q Consensus       167 ~spdg~~l~~~~---g~i~lwd~~~-~~~~~----~~~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~--~~~~  235 (612)
                      |+|+|+++++++   +.|++||+.+ ++...    .+.. ....+..++|+|+++++++++..++.|.+|++..  +...
T Consensus       136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            999999887765   8999999987 64432    2333 3347889999999998877765789999999964  3221


Q ss_pred             cceeeEeecCC---ceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCC--cceecccCCceeEeecccccCCCCcc
Q 007234          236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN--IEELRNTKATKILSSSEDVNSKSQKS  309 (612)
Q Consensus       236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~  309 (612)
                      ...........   ......+.|+     |+|++|+++. .++.|.+||+..  +....                     
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~---------------------  269 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLSK---------------------  269 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEEE---------------------
T ss_pred             EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCCceEE---------------------
Confidence            00011111111   1233456676     9998887554 689999999762  11000                     


Q ss_pred             cchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                      ...+..+. .+..++|+|||++|.+++..++.+.+|++.
T Consensus       270 --------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          270 --------------------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             --------------------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             --------------------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence                                            00111122 266788999999885666578999999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=2.7e-20  Score=183.98  Aligned_cols=221  Identities=11%  Similarity=0.058  Sum_probs=158.8

Q ss_pred             EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEE
Q 007234           23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA  102 (612)
Q Consensus        23 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd  102 (612)
                      ++.|++|++||+.+++... +..|...+.++.|+++                           ++++++++ ++.|.+||
T Consensus        18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spd---------------------------g~~l~~~~-~~~i~~~d   68 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPD---------------------------GKYLLLNS-EGLLYRLS   68 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTT---------------------------SSEEEEEE-TTEEEEEE
T ss_pred             CCcceeEEEEeCCCCceee-eccCCcceEeeEECCC---------------------------CCEEEEEc-CCeEEEEe
Confidence            3568999999999988764 3345555555555544                           77788876 78999999


Q ss_pred             cCC-CeEEEEeccCC-CCCeEEEEEecCCCEEEEEe--cCCc--EEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE-
Q 007234          103 VSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA-  175 (612)
Q Consensus       103 ~~~-~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~s--~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-  175 (612)
                      +.+ ++..... ..| ...+.+++|+|+++.|++++  .++.  |..|+..+++ ...+..+ ..+.+++|+|+|+.++ 
T Consensus        69 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           69 LAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             SSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred             CCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence            999 7776444 344 47889999999999999998  3344  4445555554 3444433 3589999999999887 


Q ss_pred             EeC--CeEEEEEc--CCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEE
Q 007234          176 TAA--GQLKTFNC--SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD  251 (612)
Q Consensus       176 ~~~--g~i~lwd~--~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  251 (612)
                      ++.  +.+++|++  .++ ....+..|...+.++.|+|+|+++++++..++.+++|++......    ...+..+...+.
T Consensus       146 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~  220 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----VERITDSAYGDW  220 (297)
T ss_dssp             EEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----EEECCCCSEEEE
T ss_pred             EECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC----cEEEecCCcccC
Confidence            443  78888875  344 345677788899999999999988877655889999998632211    223334445566


Q ss_pred             eEEecCCccCCCCcEEEEEecC-----------CcEEEEECCCcc
Q 007234          252 CRCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNIE  285 (612)
Q Consensus       252 ~~~~~~~~~~~~~~~l~t~s~d-----------g~i~iwd~~~~~  285 (612)
                      .+.|+     |+|++|++++.+           +.|++||+.+++
T Consensus       221 ~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          221 FPHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             EEEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             CeEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            67787     999999988876           468889876653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=1.2e-19  Score=183.35  Aligned_cols=238  Identities=9%  Similarity=0.039  Sum_probs=170.8

Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      +++|+|||+++++++. ++.|.+||..+++. ...+..+.....++.|+++                           ++
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d---------------------------g~   96 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD---------------------------DQ   96 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT---------------------------SS
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC---------------------------CC
Confidence            5599999997776665 89999999999987 6666544433332444444                           77


Q ss_pred             EEEEEECCC---cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCc-EEEEECCCCceeE----EEecC
Q 007234           88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLLG----KFRAS  158 (612)
Q Consensus        88 ~l~~gs~~g---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~-v~iwd~~~~~~~~----~~~~~  158 (612)
                      +++++..++   .|.+||+.+++.+..+.  +.....+++|+|+|++++++ ..++. |.+|++.....+.    .....
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  174 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG  174 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence            777555553   89999999999887663  34567999999999866655 45588 9999987543321    22233


Q ss_pred             CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee---EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ...+.+++|+|+|+++++++   +.|++||+.+++.   +..+..+ ..+..++|+|+|++++.++..++.|.+||+.++
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            45689999999999766554   7999999999887   7777754 566889999999988777656788999999887


Q ss_pred             ccccceeeEeecCC----c---eeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcc
Q 007234          233 KKQSASCVLAMEHP----A---VFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE  285 (612)
Q Consensus       233 ~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~  285 (612)
                      +..   .+......    .   .....+.|+     |+|++|++++. ++.|.+||+....
T Consensus       254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence            652   11111111    1   111235666     99998877665 5699999987654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=2.8e-19  Score=181.16  Aligned_cols=240  Identities=10%  Similarity=0.138  Sum_probs=164.6

Q ss_pred             ccceeEEEEcCCCCEEEEEeCC-CcEEEEECC--CCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            5 NIRDILTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~d-g~i~iwd~~--~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      .+..+  +|+|+|++|++++.+ +.|.+|++.  +++..  ..+..+. .                  ...+.|.+.   
T Consensus        39 ~~~~~--~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~s~d---   94 (343)
T 1ri6_A           39 QVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S------------------LTHISTDHQ---   94 (343)
T ss_dssp             CCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C------------------CSEEEECTT---
T ss_pred             CCceE--EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C------------------CcEEEEcCC---
Confidence            45444  999999999988886 999999997  55533  3333211 2                  234444443   


Q ss_pred             cccccCCcEEEEEEC-CCcEEEEEcC---CCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCC-CceeE
Q 007234           80 KKRKLGSSLLVLGTG-GGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG  153 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~-~g~I~vwd~~---~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~-~~~~~  153 (612)
                            ++.+++++. ++.|.+||+.   .+.....+ . ....+.+++|+|+|+.+++++ .++.|++||+.+ ++...
T Consensus        95 ------g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A           95 ------GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             ------SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             ------CCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence                  666666654 7889999994   33344333 2 334689999999999888887 899999999987 65432


Q ss_pred             ----EEecC-CCCeeEEEECCCCCEEEEeC---CeEEEEEcCC--Cee--EEEEe----cC--CCCEEEEEEeeCCcEEE
Q 007234          154 ----KFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       154 ----~~~~~-~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~--~~~--~~~~~----~h--~~~v~~l~~sp~~~~l~  215 (612)
                          .+..+ ...+.+++|+|+|+++++++   +.|++||+..  ++.  ...+.    ++  ...+..++|+|+|++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence                23332 34788999999999776543   8999999953  432  33332    11  23567899999999888


Q ss_pred             EEEcCCCeEEEEEcCC--CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEEC--CCcc
Q 007234          216 SSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG--QNIE  285 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~--~~~~  285 (612)
                      +++..++.|.+|++..  +...   .+........ +..+.|+     |+|++|++++ .++.|.+|++  .+++
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             EEecCCCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            6665789999999983  2221   2223333333 4566776     9999988887 5899999954  4553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=2.3e-20  Score=218.23  Aligned_cols=267  Identities=11%  Similarity=-0.031  Sum_probs=186.7

Q ss_pred             cEEEEEECCCcEEEEEcCC-CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec--------
Q 007234           87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--------  157 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--------  157 (612)
                      .++++++.+|.+.||.+.. +.....+ ..|. .+...+|+|+|+.++.+ .++.|++||+... .+..+..        
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~  290 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED  290 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred             EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence            4556677778888887653 3333333 3344 46778999999988887 5899999998544 3345544        


Q ss_pred             ---CCCCeeEEEEC-CCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCC-CEEEEEEeeCCcEEEEEEcCCCeEE-EEEcC
Q 007234          158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD  230 (612)
Q Consensus       158 ---~~~~v~~l~~s-pdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~s~~d~~i~-vwd~~  230 (612)
                         +...+.+++|+ |||+.+++++ +.|++|++.+++.. .+..|.. .+..++|+ ||+.+++++ .+..+. +|++.
T Consensus       291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~  367 (1045)
T 1k32_A          291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR  367 (1045)
T ss_dssp             EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred             ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence               22368999999 9999998887 99999999887654 4667777 89999999 999999987 577888 88988


Q ss_pred             CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCccc
Q 007234          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (612)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  310 (612)
                      ++...      .+..+...+..+.|+     |||++|++++.++.|++||+.+++...........+.. ..++|+++  
T Consensus       368 ~~~~~------~l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~-~~~SpDG~--  433 (1045)
T 1k32_A          368 TGKAE------KFEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD-FTISDNSR--  433 (1045)
T ss_dssp             TCCEE------ECCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC-EEECTTSC--
T ss_pred             CCCce------EecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc-eEECCCCC--
Confidence            76532      122333445667787     99999999999999999999988765433222211122 23788988  


Q ss_pred             chhhhcccccc--e-ecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          311 TAAIFAAKLQD--I-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       311 ~~~i~~~~~d~--~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                        .++.++.++  . ....+..+.+.+-..  .....+..|...+..++|||||++| +.++.++..+.|+.
T Consensus       434 --~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          434 --FIAYGFPLKHGETDGYVMQAIHVYDMEG--RKIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR  500 (1045)
T ss_dssp             --EEEEEEEECSSTTCSCCEEEEEEEETTT--TEEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred             --eEEEEecCccccccCCCCCeEEEEECCC--CcEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence              666665432  0 000123444443221  1245667788789999999999999 77777777777764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=1.1e-19  Score=212.56  Aligned_cols=241  Identities=12%  Similarity=0.021  Sum_probs=180.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEee-ecccccccccCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~   88 (612)
                      +.+|||||++||++. ++.|.+||....... .+..+..... ..+.      ........+.|. +.         ++.
T Consensus       249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~-~~~~------~~~~~v~~~~~S~pd---------G~~  310 (1045)
T 1k32_A          249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESP-EDRI------ISIPSKFAEDFSPLD---------GDL  310 (1045)
T ss_dssp             EEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBC-CSEE------EECGGGGEEEEEECG---------GGC
T ss_pred             eeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccccc-cccc------ccccccceeeecCCC---------CCE
Confidence            349999999999885 889999999554443 4443211000 0000      001234566776 44         666


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCC-CeEEEEEecCCCEEEEEecCCcEE-EEECCCCceeEEEecCCCCeeEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~s~dg~v~-iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      +++++ ++.|.+|++.++... .+ ..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++... +..+...+.+++
T Consensus       311 la~~~-~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~  385 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMG  385 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSBEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEE
T ss_pred             EEEEE-cCEEEEEcCCCCceE-Ec-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeE
Confidence            77777 889999999988765 33 45777 89999999 999999999888898 99998776543 446777899999


Q ss_pred             ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC---------CeEEEEEcCCCccc
Q 007234          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ  235 (612)
Q Consensus       167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d---------~~i~vwd~~~~~~~  235 (612)
                      |+|||++|++++  +.|++||+.+++....+.+|...+.+++|+|||++|++++..+         +.|++||+.+++..
T Consensus       386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~  465 (1045)
T 1k32_A          386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  465 (1045)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence            999999999887  7999999999998888878999999999999999998876322         48999999887522


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                            .+..+........|+     |||++|++++.++....|+....
T Consensus       466 ------~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          466 ------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             ------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSS
T ss_pred             ------EeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhcc
Confidence                  222333334456677     99999999999888888876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=1.1e-19  Score=179.56  Aligned_cols=231  Identities=11%  Similarity=0.070  Sum_probs=164.0

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeeccC-CccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ...|..+  +|+|||++|++++ ++.|.+||+.+ ++.......+. ..+.++.|+++                      
T Consensus        41 ~~~v~~~--~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd----------------------   95 (297)
T 2ojh_A           41 PELFEAP--NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD----------------------   95 (297)
T ss_dssp             SSCCEEE--EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT----------------------
T ss_pred             CcceEee--EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC----------------------
Confidence            3456544  9999999999987 78999999999 87766554432 33333444443                      


Q ss_pred             ccccCCcEEEEEEC--CCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCC-CceeEE
Q 007234           81 KRKLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLT-GSLLGK  154 (612)
Q Consensus        81 ~~~~~~~~l~~gs~--~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~-~~~~~~  154 (612)
                           ++.+++++.  ++.  |..|++.++... .+ . +...+..++|+|+++.|+ +++.|+.+++|++.. +.....
T Consensus        96 -----g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           96 -----GALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             -----SSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             -----CCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence                 778888883  344  555555655532 33 2 233589999999999877 778899999998532 233455


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcC-CCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC---------
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------  221 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d---------  221 (612)
                      +..+...+.+++|+|+|+++++++   +.+++|++. .+..+..+..|...+.++.|+|+|++|++++..+         
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  247 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL  247 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence            666777899999999999887653   688888876 4556777888888899999999999998877421         


Q ss_pred             -CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234          222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                       +.|.+||+.+++..   .+.....+...+..+.|+     |++++|++++.+.
T Consensus       248 ~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~  293 (297)
T 2ojh_A          248 DVRVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred             ceEEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence             56999999887643   233332223334445666     9999998887753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=2e-19  Score=182.77  Aligned_cols=237  Identities=11%  Similarity=0.096  Sum_probs=175.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCC-ccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++++++.++++++.+++|++||..+++.+..+..+.. .+.                  .+.|.+.         ++.+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~~~   57 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG------------------TAMMAPD---------NRTA   57 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC------------------EEEECTT---------SSEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc------------------eeEECCC---------CCEE
Confidence            47899999999999999999999999998887763320 222                  3344332         5544


Q ss_pred             -EEEECCCcEEEEEcCCCeEEEEeccCC-----CCCeEEEEEecCCCEEEEEecC------------CcEEEEECCCCce
Q 007234           90 -VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL  151 (612)
Q Consensus        90 -~~gs~~g~I~vwd~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~s~s~d------------g~v~iwd~~~~~~  151 (612)
                       +++..++.|.+||+.+++....+...+     ...+.+++|+|+|+++++++.+            +.|.+||+.+++.
T Consensus        58 ~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           58 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence             455567889999999998876664333     2337899999999999998865            8999999988543


Q ss_pred             ---eEEEecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCC-----------------------------
Q 007234          152 ---LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP-----------------------------  199 (612)
Q Consensus       152 ---~~~~~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~-----------------------------  199 (612)
                         +..+.. ...+.+++|+|||+ ++++++.|++||+.+++.+..+..+.                             
T Consensus       138 ~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (349)
T 1jmx_B          138 AKPVRTFPM-PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT  215 (349)
T ss_dssp             BCCSEEEEC-CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             cceeeeccC-CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence               344443 34688999999999 66677779999999998777665332                             


Q ss_pred             ---------------------------------------CCEEEEEEee-CCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          200 ---------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       200 ---------------------------------------~~v~~l~~sp-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                                                             ..+..++|+| ++++++++   ++.|.+||+.+++..    
T Consensus       216 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~----  288 (349)
T 1jmx_B          216 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI----  288 (349)
T ss_dssp             EEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE----
T ss_pred             eeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE----
Confidence                                                   1345677789 99988876   679999999987643    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                       ..+..... ...+.++     |+|++|++++.++.|.+||..+++.+..+
T Consensus       289 -~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          289 -KAANLDHT-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             -EEEECSSC-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             -EEEcCCCC-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence             22222222 2356676     99998888888999999999998876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.8e-18  Score=176.21  Aligned_cols=242  Identities=10%  Similarity=0.107  Sum_probs=161.2

Q ss_pred             EEEcCCCCEEEEEeC---CCcEEEEECCCCcE--EEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           11 TSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        11 ~~fspdg~~las~s~---dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      ++|||||+ |++++.   ++.|.+||+.+++.  +..+..+...+..++|+++                           
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd---------------------------   96 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA---------------------------   96 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT---------------------------
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC---------------------------
Confidence            49999999 554443   68999999987763  3333333444444444444                           


Q ss_pred             CcEEEEEE-CCCcEEEEEcC-CCe--EEEEeccC--------CCCCeEEEEEecCCCEEEEEecCCcEEEEECC-CCcee
Q 007234           86 SSLLVLGT-GGGDVLALAVS-AGQ--LKWRLSDC--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLL  152 (612)
Q Consensus        86 ~~~l~~gs-~~g~I~vwd~~-~~~--~~~~~~~~--------h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~-~~~~~  152 (612)
                      ++++++++ .++.|.+|++. .+.  .+..+...        +...+.+++|+|+|+.+++...++.|++||+. +++..
T Consensus        97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A           97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence            77777777 67889999996 333  22222111        12348899999999966666678899999998 55433


Q ss_pred             E--EEecC-CCCeeEEEECCCCCEEEEeC---CeEEEEEcCC--Cee--EEEEecCC------CCEEEEEEeeCCcEEEE
Q 007234          153 G--KFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       153 ~--~~~~~-~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~--~~~--~~~~~~h~------~~v~~l~~sp~~~~l~s  216 (612)
                      .  .+... ...+..++|+|||+++++++   +.|++|++..  ++.  +..+....      ..+..++|+|||++|++
T Consensus       177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred             EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence            2  22332 23678999999999777654   7999999874  543  33343333      34888999999998866


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-CcEEEE--ECCCccee
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-GVCYIW--YGQNIEEL  287 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-g~i~iw--d~~~~~~~  287 (612)
                      ++..++.|.+|++......  ..+............+.|+     |||++|++++.+ +.|.+|  |..+++..
T Consensus       257 ~~~~~~~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          257 SNRGYNTLAVFAVTADGHL--TLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEETTTEEEEEEECGGGCE--EEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EeCCCCEEEEEEECCCCcE--EEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            6556899999999743211  1233333323334566777     999998888764 899999  45556543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=2.4e-19  Score=202.06  Aligned_cols=280  Identities=7%  Similarity=-0.019  Sum_probs=194.5

Q ss_pred             eeEEEeeecccccccccCCcEEEEEEC-CC-----cEEEEEcCCCeEEEEeccCCC------------------------
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP------------------------  117 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~-~g-----~I~vwd~~~~~~~~~~~~~h~------------------------  117 (612)
                      ...+.|.+.         ++.|++++. +|     .|++||+.+++....+. .+.                        
T Consensus        39 ~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (741)
T 2ecf_A           39 LMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAM  108 (741)
T ss_dssp             CEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------CC
T ss_pred             CCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccc
Confidence            455666554         788999888 88     89999999998764442 232                        


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCCCc--eeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK  194 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~  194 (612)
                      ..|.+++|+|||++|++++. +.|++||+.++.  ....+..+...+.+++|+|||++|+.++ +.|++||+.+++....
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            23889999999999999886 999999998873  4445666777899999999999999888 8999999999887655


Q ss_pred             EecCCCC----------------EEEEEEeeCCcEEEEEEcCCC---------------------------------eEE
Q 007234          195 FSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YIA  225 (612)
Q Consensus       195 ~~~h~~~----------------v~~l~~sp~~~~l~s~s~~d~---------------------------------~i~  225 (612)
                      ...+...                +.++.|+|||++|++++ .|+                                 .|.
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            4444433                36799999999999886 344                                 788


Q ss_pred             EEEcCC-CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-----CCcEEEEECCCcceecccCCceeE---
Q 007234          226 LWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL---  296 (612)
Q Consensus       226 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-----dg~i~iwd~~~~~~~~~~~~~~~~---  296 (612)
                      +||+.+ ++..   .+.....+...+..+.|      |||++|++++.     ++.|++||+.+++...........   
T Consensus       267 ~~d~~~~~~~~---~~~~~~~~~~~~~~~~~------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          267 VISPAEQAQTQ---WIDLGKEQDIYLARVNW------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP  337 (741)
T ss_dssp             EECSSTTCCCE---EECCCSCSSEEEEEEEE------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             EEECCCCCceE---EecCCCCcceEEEEEEe------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence            899887 6533   11111122333333433      57888887764     568999999988754432211110   


Q ss_pred             eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEE-EecCCCceEecccccee--e
Q 007234          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK--S  373 (612)
Q Consensus       297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l-~~S~dg~~l~~s~s~d~--~  373 (612)
                      ......|+|+++    .++++..++..     .++..+-.  .. ...+..|...+..+ +|||||+.++++++.++  .
T Consensus       338 ~~~~~~~spdg~----~~~~~~~~g~~-----~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~  405 (741)
T 2ecf_A          338 LHNSLRFLDDGS----ILWSSERTGFQ-----HLYRIDSK--GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE  405 (741)
T ss_dssp             CCSCCEECTTSC----EEEEECTTSSC-----EEEEECSS--SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred             cCCceEECCCCe----EEEEecCCCcc-----EEEEEcCC--CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence            011233788877    66666665522     33333211  12 45677787788887 59999998856777666  8


Q ss_pred             ecceeee
Q 007234          374 KRGRYVQ  380 (612)
Q Consensus       374 ~~~w~~~  380 (612)
                      +++|.+.
T Consensus       406 ~~l~~~~  412 (741)
T 2ecf_A          406 SQIYAVP  412 (741)
T ss_dssp             BEEEEEE
T ss_pred             EEEEEEE
Confidence            8899874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1e-17  Score=170.55  Aligned_cols=232  Identities=13%  Similarity=0.095  Sum_probs=155.0

Q ss_pred             CcEEEEEEC---CCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCC-C--ceeEEEe
Q 007234           86 SSLLVLGTG---GGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-G--SLLGKFR  156 (612)
Q Consensus        86 ~~~l~~gs~---~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~-~--~~~~~~~  156 (612)
                      ++ +++++.   ++.|.+|++.++..  +..+ ..+...+..++|+|+|++|++++ .++.|.+||+.. +  +.+..+.
T Consensus        51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~  128 (347)
T 3hfq_A           51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ  128 (347)
T ss_dssp             CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence            66 554444   57899999987764  2222 34677889999999999988888 689999999863 3  2333333


Q ss_pred             cC---------CCCeeEEEECCCCCEEEEeC--CeEEEEEcC-CCeeE--EEEecCC-CCEEEEEEeeCCcEEEEEEcCC
Q 007234          157 AS---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGHP-GAVRFMTFSDNGKYVLSSAVGE  221 (612)
Q Consensus       157 ~~---------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-~~~~~--~~~~~h~-~~v~~l~~sp~~~~l~s~s~~d  221 (612)
                      ..         ...+.+++|+|||+++++..  +.|++||+. +++..  ..+..+. ..+..++|+|||+++++++..+
T Consensus       129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  208 (347)
T 3hfq_A          129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS  208 (347)
T ss_dssp             CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence            21         12488999999999555544  799999998 55432  2233332 3678899999999888776678


Q ss_pred             CeEEEEEcCC--CccccceeeEeec-CCc-----eeEEeEEecCCccCCCCcEEEE-EecCCcEEEEECCCcceecccCC
Q 007234          222 RYIALWRTDG--VKKQSASCVLAME-HPA-----VFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       222 ~~i~vwd~~~--~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~t-~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      +.|.+|++..  ++..   ...... .+.     .....+.|+     |||++|++ ...++.|.+|++.....+.    
T Consensus       209 ~~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~----  276 (347)
T 3hfq_A          209 SQIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT----  276 (347)
T ss_dssp             TEEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred             CEEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence            9999999875  3321   111211 111     345567777     99998755 4568999999975221100    


Q ss_pred             ceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEecccccee
Q 007234          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (612)
Q Consensus       293 ~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~  372 (612)
                         .                                             ...+..+...+..++|||||++|.+++..++
T Consensus       277 ---~---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          277 ---L---------------------------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             ---E---------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             ---E---------------------------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence               0                                             0012223335678899999998845555668


Q ss_pred             eecceee
Q 007234          373 SKRGRYV  379 (612)
Q Consensus       373 ~~~~w~~  379 (612)
                      .+.+|.+
T Consensus       309 ~v~v~~~  315 (347)
T 3hfq_A          309 NATLYAR  315 (347)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999966

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=7e-18  Score=171.75  Aligned_cols=233  Identities=9%  Similarity=0.094  Sum_probs=174.1

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++|+|||++++.+ ..++.|.+||..+++.+..+..+.....         .........++.|.+.         ++.
T Consensus        93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~d---------g~~  154 (353)
T 3vgz_A           93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT---------EEVRPLQPRELVADDA---------TNT  154 (353)
T ss_dssp             SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC---------SSCCCCEEEEEEEETT---------TTE
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc---------cccCCCCCceEEECCC---------CCE
Confidence            34999999966555 4579999999999998887764322100         0000112344555544         566


Q ss_pred             EEEEE--CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----CCCCe
Q 007234           89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI  162 (612)
Q Consensus        89 l~~gs--~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v  162 (612)
                      +++++  .++.|.+||+.+++....+. .+...+.+++|+|+|+.+++++.++.|.+||..+++....+..    +...+
T Consensus       155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  233 (353)
T 3vgz_A          155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF  233 (353)
T ss_dssp             EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred             EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence            66665  47789999999999887763 3555688999999999999999999999999999998888765    34467


Q ss_pred             eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      .+++|+|+|+++++++   +.|++||..+++.+..+..+..  ..++|+|+|+++++++..++.|.+||+.+++..    
T Consensus       234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----  307 (353)
T 3vgz_A          234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV----  307 (353)
T ss_dssp             EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence            8899999999877665   7999999999998888875442  569999999977777656899999999887643    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCC
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                       ..+.... ....+.|+     |+|++++++..++
T Consensus       308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~  335 (353)
T 3vgz_A          308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK  335 (353)
T ss_dssp             -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred             -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence             2233333 34566776     9999887777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.83  E-value=1.8e-18  Score=174.80  Aligned_cols=242  Identities=10%  Similarity=0.013  Sum_probs=175.6

Q ss_pred             cceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            6 IRDILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         6 V~~l~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +..+  +|+|||++++ +++.++.|.+||+.+++.+..+.......             .......+.|.+.        
T Consensus        36 ~~~~--~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d--------   92 (337)
T 1pby_B           36 PMVP--MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD--------   92 (337)
T ss_dssp             CCCE--EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT--------
T ss_pred             ccce--EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC--------
Confidence            4445  9999998765 45557899999999999887765321000             0001223334332        


Q ss_pred             CCcEEEEEE------------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee
Q 007234           85 GSSLLVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (612)
Q Consensus        85 ~~~~l~~gs------------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~  152 (612)
                       ++.++++.            .++.|.+||+.+++....+.  ....+.+++|+|+|++++++  ++.|++||+.+++..
T Consensus        93 -g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B           93 -GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             -SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred             -CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence             66777776            57899999999998876664  24568889999999988888  688999999999988


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC---C-----------------------eEEEEEcCCCeeE-EEEecCCCCEEEE
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFM  205 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~---g-----------------------~i~lwd~~~~~~~-~~~~~h~~~v~~l  205 (612)
                      ..+..+.. ...+.|+|+|+.++..+   +                       .|.+||+.+++.. ..+..+...+.++
T Consensus       168 ~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  246 (337)
T 1pby_B          168 EDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST  246 (337)
T ss_dssp             EEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             eeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE
Confidence            87765441 11337899998776554   2                       4789999998764 3345667788899


Q ss_pred             EEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       206 ~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      +|+|+|++++++   ++.|.+||+.+++..     ....... ....+.|+     |+|+++++++.++.|.+||+.+++
T Consensus       247 ~~s~dg~~l~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          247 AVNPAKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EECTTSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCC
T ss_pred             EECCCCCEEEEe---CCeEEEEECCCCcCc-----ceecCCC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCc
Confidence            999999998876   589999999887643     2222222 23455676     999999999999999999999988


Q ss_pred             eeccc
Q 007234          286 ELRNT  290 (612)
Q Consensus       286 ~~~~~  290 (612)
                      .+..+
T Consensus       313 ~~~~~  317 (337)
T 1pby_B          313 KKGQV  317 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=4.9e-19  Score=193.84  Aligned_cols=232  Identities=13%  Similarity=0.095  Sum_probs=159.4

Q ss_pred             cccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      .+|.++  +|||||++||+++. ||+++||++.+++..+ +..+. ..+....|++                        
T Consensus        22 ~~~~~~--~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp------------------------   74 (582)
T 3o4h_A           22 VEKYSL--QGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV------------------------   74 (582)
T ss_dssp             SCEEEE--EEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC------------------------
T ss_pred             cchhee--ecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC------------------------
Confidence            366555  99999999999887 9999999997666544 33332 3444444442                        


Q ss_pred             cccCCcEEEEEEC---CCcEEEEEcCC---CeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEE
Q 007234           82 RKLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        82 ~~~~~~~l~~gs~---~g~I~vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                          ++++++++.   +....+|.+..   +... .+..  ...+...+|+|+|+. +++.+.++.+.+||+.+++....
T Consensus        75 ----d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l  147 (582)
T 3o4h_A           75 ----GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL  147 (582)
T ss_dssp             ----SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             ----CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence                334555654   34455654432   2222 3332  233556788888864 33444445556999998877665


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC--eEEE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL  226 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~--~i~v  226 (612)
                      ...+.   .+++|+|||+++++++      +.|++||+.+++.. .+.+|...+..++|+|||+.|+++. .++  .|++
T Consensus       148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~  222 (582)
T 3o4h_A          148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVT  222 (582)
T ss_dssp             EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEE
T ss_pred             ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEE
Confidence            54333   8899999999999665      36999999988754 6788999999999999999999655 688  8999


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEE--------ecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRC--------IDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      ||+.+++..      ....+...+....        |+     |||.++++++.||.+++|++  ++..
T Consensus       223 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          223 VDPRDGSVE------DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             ECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             EcCCCCcEE------EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCee
Confidence            999887532      2222222122222        66     99988999999999999998  5544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2.7e-19  Score=187.99  Aligned_cols=213  Identities=12%  Similarity=0.032  Sum_probs=153.2

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++.+  ++++++.++++++.|| ++||+........  ...........+... ..-+....+.++.|.+.        
T Consensus        38 ~~n~l--avs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spd--------  103 (434)
T 2oit_A           38 RSSLL--AVSNKYGLVFAGGASG-LQIFPTKNLLIQN--KPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCD--------  103 (434)
T ss_dssp             CCBCE--EEETTTTEEEEEETTE-EEEEEHHHHCCCC--CTTCCTTCEEECCCC-EEECCSSCEEEEEECTT--------
T ss_pred             CccEE--EEecCCCEEEEECCCE-EEEEEchHhhhhc--ccccCcccccccCcc-ccccCCCcccEEEEcCC--------
Confidence            35445  9999999999999888 8998764221100  000000000000000 00111335677888765        


Q ss_pred             CCcEEE----EEECCCcEEEEEcCCC--------eE--EEEeccCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCC
Q 007234           85 GSSLLV----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        85 ~~~~l~----~gs~~g~I~vwd~~~~--------~~--~~~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~  149 (612)
                       +++|+    +|+.|+.|++||+.++        +.  ......+|...|.+++|+|+ +.+|++++.||+|++||++++
T Consensus       104 -g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          104 -NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             -SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             -CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence             66777    6778999999998765        11  12444679999999999997 789999999999999999999


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-------CCEEEEEEeeCCcEEEEEEcC
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      ..+.....|...|.+++|+|+|++|++|+  |.|++||++ ++....+..|.       ..|.++.|++++.++++.+..
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            77777777888999999999999999998  899999998 66666665443       379999999999888765545


Q ss_pred             CC------eEEEEEcCCCc
Q 007234          221 ER------YIALWRTDGVK  233 (612)
Q Consensus       221 d~------~i~vwd~~~~~  233 (612)
                      ||      .+++|++.+.+
T Consensus       262 dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             TCCSSSCCEEEEEECCCTT
T ss_pred             CCccCCCCceEEEEeccCC
Confidence            53      38999998653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=1.5e-18  Score=194.99  Aligned_cols=238  Identities=11%  Similarity=0.047  Sum_probs=168.0

Q ss_pred             cceeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeec---cCCccccccccccccccccccceeEEEe
Q 007234            6 IRDILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFAD---IASTETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~d---------g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      |..+  +|||||++||+++.+         +.|.+||+.+++. ..+..   +...+....|+++               
T Consensus        63 v~~~--~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd---------------  124 (723)
T 1xfd_A           63 AIRY--EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK---------------  124 (723)
T ss_dssp             CSEE--EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS---------------
T ss_pred             cceE--EECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC---------------
Confidence            6555  999999999999864         7788999999886 33332   2223455556655               


Q ss_pred             eecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC------------------eEEEEEecCCCEEEEE
Q 007234           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSA  135 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~------------------V~~l~~sp~~~~l~s~  135 (612)
                                  ++.|+.++. ++|++||+.+++..... ..+...                  +.+++|+|||+.|+++
T Consensus       125 ------------G~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          125 ------------GQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             ------------TTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ------------CCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence                        777888876 78999999998876444 333333                  3789999999999998


Q ss_pred             ecCC----------------------------------cEEEEECCCCceeEEEecC------CCCeeEEEECCCCCEEE
Q 007234          136 GADG----------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLA  175 (612)
Q Consensus       136 s~dg----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~spdg~~l~  175 (612)
                      +.|+                                  .|++||+.+++....+..+      ...+.+++|+|||++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence            7653                                  7999999988866666654      45789999999999987


Q ss_pred             EeC------CeEEEEEcCCCeeEEEEec-CCCCEE----EEEEeeCCcEEEEE-EcCCC------eEEEEE-cCCCcccc
Q 007234          176 TAA------GQLKTFNCSDHKKMQKFSG-HPGAVR----FMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKKQS  236 (612)
Q Consensus       176 ~~~------g~i~lwd~~~~~~~~~~~~-h~~~v~----~l~~sp~~~~l~s~-s~~d~------~i~vwd-~~~~~~~~  236 (612)
                      +..      ..|++||+.+++....+.. +...+.    .++|+|||+.|+.. +..++      .|.+|| ..++... 
T Consensus       271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-  349 (723)
T 1xfd_A          271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND-  349 (723)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-
T ss_pred             EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-
Confidence            653      4799999999987666543 344443    78999999977764 44577      466666 3333300 


Q ss_pred             ceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecC---CcEEEEECCC
Q 007234          237 ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN  283 (612)
Q Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~d---g~i~iwd~~~  283 (612)
                        +...+. +.........|+     |||+.|+..+.+   +.+++|++..
T Consensus       350 --~~~~l~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          350 --NIQSITSGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             --CCCBSCCSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             --ceeEeecCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence              011122 223333445677     999999877655   7899999764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=3.4e-19  Score=200.23  Aligned_cols=324  Identities=9%  Similarity=0.021  Sum_probs=194.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCC---ccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS---TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      .++|+|||+++++ +.||+|++||+.+++....+.++..   .+.+..|+++                           +
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD---------------------------g   71 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD---------------------------R   71 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT---------------------------S
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC---------------------------C
Confidence            4599999976554 4699999999999998776654432   1333444444                           7


Q ss_pred             cEEEEEEC---------CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE-e
Q 007234           87 SLLVLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-R  156 (612)
Q Consensus        87 ~~l~~gs~---------~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~  156 (612)
                      +.|+.++.         ++.|++||+.+++.+...  .....+..++|||||+.|+.++ |+.|++||+.+++..... .
T Consensus        72 ~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           72 QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred             CeEEEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence            88888876         688999999999873111  1135688999999999999885 789999999888765432 2


Q ss_pred             cCCCCe-----------------eEEEECCCCCEEEEeC-C-----------------------------------eEEE
Q 007234          157 ASTKGI-----------------SCMAVSSDGKMLATAA-G-----------------------------------QLKT  183 (612)
Q Consensus       157 ~~~~~v-----------------~~l~~spdg~~l~~~~-g-----------------------------------~i~l  183 (612)
                      ++...+                 .+++|+|||++|++++ .                                   .|++
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            222212                 4899999999999875 1                                   7889


Q ss_pred             EEcCCCeeE--------EEEecCCCCEEEEEEeeCCcEEEEEEcC-C--CeEEEEE----cCCCccccceeeEe---ecC
Q 007234          184 FNCSDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA---MEH  245 (612)
Q Consensus       184 wd~~~~~~~--------~~~~~h~~~v~~l~~sp~~~~l~s~s~~-d--~~i~vwd----~~~~~~~~~~~~~~---~~~  245 (612)
                      ||+.+++..        ..+.+|...+.+++|+||++.+++.... +  ..|.+||    +.+++...   +..   ..+
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~---~~~~~~~~~  305 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK---TQEHIEESR  305 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG---GGEEEEECS
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE---EEecccccC
Confidence            999988642        1234688889999999998876664321 2  2488889    76665431   111   122


Q ss_pred             CceeE----EeEEecCCccCCCCcEEEE--EecCC--cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcc
Q 007234          246 PAVFM----DCRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (612)
Q Consensus       246 ~~~~~----~~~~~~~~~~~~~~~~l~t--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~  317 (612)
                      ...+-    ....|+     |||+.++.  ...+|  .|.+||+.+++.. ........+.... +. +++    .|+..
T Consensus       306 ~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~-~~-d~~----~i~~~  373 (719)
T 1z68_A          306 TGWAGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIF-RV-TQD----SLFYS  373 (719)
T ss_dssp             SSCSSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEE-EE-CSS----EEEEE
T ss_pred             CceEccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEE-EE-eCC----EEEEE
Confidence            22211    145566     99986554  44555  5677777666522 1221111111111 22 333    33332


Q ss_pred             cccceecCCCceEEEEeCCccCceEEEeec----cCCCeEEEEecCCCceEeccccce--eeecceee
Q 007234          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILV----NSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYV  379 (612)
Q Consensus       318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~----h~~~v~~l~~S~dg~~l~~s~s~d--~~~~~w~~  379 (612)
                      +.++........++......-....+.+..    |...+..+.|||||++++++++.+  -.+.+|+.
T Consensus       374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence            221000000122333221000001122322    555678899999999885555544  24456655

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.9e-17  Score=169.65  Aligned_cols=239  Identities=15%  Similarity=0.152  Sum_probs=157.9

Q ss_pred             EEEcCCCCEEEEEeCC----CcEEEEECCC--CcEEE--EeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234           11 TSFSPALDYFAICSGD----ARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        11 ~~fspdg~~las~s~d----g~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ++|||||++|++++.+    +.|.+|++..  |+...  ....+                  ......+.+   +     
T Consensus        55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------~~~p~~~~~---d-----  108 (361)
T 3scy_A           55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------GADPCYLTT---N-----  108 (361)
T ss_dssp             EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------SSCEEEEEE---C-----
T ss_pred             EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------CCCcEEEEE---C-----
Confidence            4999999999998875    7999998765  54322  22111                  112222333   2     


Q ss_pred             ccCCcEEEEEE-CCCcEEEEEcCCCeEEEEec-----c--------CCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECC
Q 007234           83 KLGSSLLVLGT-GGGDVLALAVSAGQLKWRLS-----D--------CHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL  147 (612)
Q Consensus        83 ~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~-----~--------~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~  147 (612)
                         ++++++++ .++.|.+|++.....+....     .        .+...+.+++|+|+|+++++++ .++.|.+|++.
T Consensus       109 ---g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          109 ---GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             ---SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ---CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence               56666666 57889999997543321110     1        1233468899999999776665 48899999887


Q ss_pred             CCce------e------EEE-ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee--EEEEe---cCCCCEEEEE
Q 007234          148 TGSL------L------GKF-RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFMT  206 (612)
Q Consensus       148 ~~~~------~------~~~-~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~--~~~~~---~h~~~v~~l~  206 (612)
                      ....      +      ..+ ......+.+++|+|||+++++++   +.|.+||+.+++.  +..+.   .+......++
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence            5431      1      122 22345688999999999877655   7999999987754  33332   3334578999


Q ss_pred             EeeCCcEEEEEEcC-CCeEEEEEcC--CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEE--
Q 007234          207 FSDNGKYVLSSAVG-ERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY--  280 (612)
Q Consensus       207 ~sp~~~~l~s~s~~-d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd--  280 (612)
                      |+|||++|+++... ++.|.+|++.  +++..   .+..... ......+.|+     |+|++|++++ .++.|.+|+  
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEEE
Confidence            99999999877655 5899999996  33322   2222222 2334456776     9999998887 578999965  


Q ss_pred             CCCccee
Q 007234          281 GQNIEEL  287 (612)
Q Consensus       281 ~~~~~~~  287 (612)
                      ..+++..
T Consensus       337 ~~~g~~~  343 (361)
T 3scy_A          337 QATGLLT  343 (361)
T ss_dssp             TTTCCEE
T ss_pred             CCCCcEe
Confidence            4466543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=4.8e-18  Score=190.39  Aligned_cols=254  Identities=13%  Similarity=0.107  Sum_probs=175.0

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ..+..+  +|||||++||++ .|+.|++||+.+     ++.......+...+.   ...+....+ .....++.|.+.  
T Consensus       121 ~~~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~ee-~~~~~~~~~SpD--  191 (706)
T 2z3z_A          121 EETASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV---YGQAVHQRE-FGIEKGTFWSPK--  191 (706)
T ss_dssp             TCCTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE---ESSCCGGGC-TTCCCSEEECTT--
T ss_pred             ccccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE---cccchhhhh-cCCCceEEECCC--
Confidence            445555  999999999985 579999999998     776654432222110   000000000 011244555544  


Q ss_pred             ccccccCCcEEEEEE---------------------------------CCCcEEEEEcCCCeEEEEec-cCCCCCeEEEE
Q 007234           79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS  124 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs---------------------------------~~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~  124 (612)
                             ++.|++++                                 .++.|++||+.+++...... ..|...+.+++
T Consensus       192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  264 (706)
T 2z3z_A          192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS  264 (706)
T ss_dssp             -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred             -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence                   67777776                                 34569999999988754332 25777899999


Q ss_pred             EecCCCEEEEEecCC-----cEEEEECCCCceeEEEe-c-CCC---CeeEEEECC--CCCEEEEeC--CeEEEEEcC-CC
Q 007234          125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH  189 (612)
Q Consensus       125 ~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~sp--dg~~l~~~~--g~i~lwd~~-~~  189 (612)
                      |+|||+.|++++.++     .|++||+.+++....+. . +..   .+.+++|+|  ||+++++++  |.+++|++. ++
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            999999999988775     89999999984444332 2 221   246789999  999998887  777888775 66


Q ss_pred             eeEEEEecCCCCEEE-EEEeeCCcEEEEEEcCCC----eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCC
Q 007234          190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (612)
Q Consensus       190 ~~~~~~~~h~~~v~~-l~~sp~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (612)
                      +.+..+..|...+.. +.|+|+|+.++.++..++    .|..||+.++...      .+.+... +..+.|+     |||
T Consensus       345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~~-~~~~~~s-----pdg  412 (706)
T 2z3z_A          345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESG-MHRTQLS-----PDG  412 (706)
T ss_dssp             CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSSS-EEEEEEC-----TTS
T ss_pred             CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCCc-eEEEEEC-----CCC
Confidence            777888888888887 799999998887775554    6777777765422      2223333 4567777     999


Q ss_pred             cEEEEEecC----CcEEEEECCCcc
Q 007234          265 LYVLAISET----GVCYIWYGQNIE  285 (612)
Q Consensus       265 ~~l~t~s~d----g~i~iwd~~~~~  285 (612)
                      ++++..+.+    +.|++||..+++
T Consensus       413 ~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          413 SAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CEEEEEecCCCCCcEEEEEECCCCe
Confidence            988877543    569999998776

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=7.3e-18  Score=174.29  Aligned_cols=238  Identities=9%  Similarity=0.046  Sum_probs=161.8

Q ss_pred             EEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           11 TSFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        11 ~~fspdg~~las~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .+|||||++||+++. +|  .|.+||+.+++......++...+....|+++                           ++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~   93 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD   93 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence            389999999999887 67  4888899999887766554444334455555                           88


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEE--EecCCCEEEEE----------------------ecCCcEEE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE  143 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~--~sp~~~~l~s~----------------------s~dg~v~i  143 (612)
                      .|+.++.++.|++||+.+++..... ..+...+....  ++|++..++..                      +.+..|.+
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            8999999999999999999876433 34555454443  48999887743                      23468999


Q ss_pred             EECCCCceeEEEecCCCCeeEEEECC-CCCEEEEeC-C-------eEEEEEcCCCeeEEEEecCC--CCEEEEEEeeCCc
Q 007234          144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK  212 (612)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~-g-------~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~  212 (612)
                      ||+.+++..... .+...+..++|+| ||+.|+... +       .|+++|..+++. ..+..+.  ..+..+.|+|||+
T Consensus       173 ~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          173 VDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence            999988754443 4566789999999 999887654 2       788888876644 3444444  3577889999999


Q ss_pred             EEEEEEcCCC----eEEEEEcCCCccccceeeEeecCCcee---EEeEEecCCccCCCCcEEEEE---------ecCCcE
Q 007234          213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC  276 (612)
Q Consensus       213 ~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~t~---------s~dg~i  276 (612)
                      .|+..+..++    .|.+||+.+++..   .+.........   .....|+     |||+.|+..         ..+..|
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence            7766543322    3999999988643   22222210000   0111344     888887754         345689


Q ss_pred             EEEECCCcce
Q 007234          277 YIWYGQNIEE  286 (612)
Q Consensus       277 ~iwd~~~~~~  286 (612)
                      ++||+.+++.
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999887654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=4.4e-17  Score=167.36  Aligned_cols=239  Identities=14%  Similarity=0.164  Sum_probs=162.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeecc-CCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .++|+|||++|++++.+ .|.+|++. +|+........ .+....+.|+++                           ++
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g~   95 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------TR   95 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------CE
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------CC
Confidence            45999999999988887 99999997 78765443311 122344555554                           55


Q ss_pred             E--EEEEE-------------CCCcEEEEEcC-CCeEEEEec---cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECC
Q 007234           88 L--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL  147 (612)
Q Consensus        88 ~--l~~gs-------------~~g~I~vwd~~-~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~  147 (612)
                      .  ++++.             .+|.+.+|++. .++....+.   ..+...+.+++|+|+|+++++++. ++.|++||+.
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A           96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence            3  33442             68889999997 465543321   135578999999999998887764 6799999998


Q ss_pred             -CCcee--EEEec--CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC--CCeeE---EEEe-------cCCC------C
Q 007234          148 -TGSLL--GKFRA--STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------A  201 (612)
Q Consensus       148 -~~~~~--~~~~~--~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~~~~---~~~~-------~h~~------~  201 (612)
                       +++..  ..+..  +...+..++|+|||+++++++   +.|.+|++.  +++..   ..+.       +|..      .
T Consensus       176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  255 (365)
T 1jof_A          176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence             67653  33432  355789999999999988765   789999865  56542   2222       1222      4


Q ss_pred             EEEEE-EeeCCcEEEEEEcCCC-----eEEEEEcC-CCccccceeeE-eecCCceeEEeEEecCCccCC---CCcEEEEE
Q 007234          202 VRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLAI  270 (612)
Q Consensus       202 v~~l~-~sp~~~~l~s~s~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~t~  270 (612)
                      +..++ |+|||++|+++...+.     .|.+|++. +++..   .+. ...........++++     |   ||++|+++
T Consensus       256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v~  327 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAIT  327 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEEE
T ss_pred             cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEEE
Confidence            88999 9999998887653333     89999996 44322   111 122122222334455     7   89999999


Q ss_pred             ecC-CcEEEEECCCc
Q 007234          271 SET-GVCYIWYGQNI  284 (612)
Q Consensus       271 s~d-g~i~iwd~~~~  284 (612)
                      +.+ +.|.+|+.+..
T Consensus       328 ~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             EcCCCeEEEEEEchh
Confidence            874 89999998655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=4.8e-17  Score=183.13  Aligned_cols=246  Identities=11%  Similarity=0.013  Sum_probs=168.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++|+|||++++++  ||+|++||+.++++...+.++........+             ....|.|.         ++.|
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Spd---------g~~l   76 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSI-------------NDYSISPD---------GQFI   76 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCC-------------CEEEECTT---------SSEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccc-------------cceEECCC---------CCEE
Confidence            45999999999886  999999999999988777765532211111             11233322         7788


Q ss_pred             EEEECC---------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCC
Q 007234           90 VLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAST  159 (612)
Q Consensus        90 ~~gs~~---------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~  159 (612)
                      +.++.+         +.+.+||+.+++.. .+ ..|...+...+|||||+.|+.+ .|+.|++||+.+++..+. ..++.
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~  153 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCc
Confidence            888875         66789999999875 33 4577889999999999999888 578999999988875442 22222


Q ss_pred             CCe-----------------eEEEECCCCCEEEEeC---C-----------------------------------eEEEE
Q 007234          160 KGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKTF  184 (612)
Q Consensus       160 ~~v-----------------~~l~~spdg~~l~~~~---g-----------------------------------~i~lw  184 (612)
                      ..+                 ..+.|||||+.|+.++   +                                   +|++|
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            222                 3589999999998763   1                                   58899


Q ss_pred             EcCC---Ce--eEEEEe------cCCCCEEEEEEeeCCcEEEEEEcC---CCeEEEEEcCCCc----cccceeeEeecCC
Q 007234          185 NCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEHP  246 (612)
Q Consensus       185 d~~~---~~--~~~~~~------~h~~~v~~l~~sp~~~~l~s~s~~---d~~i~vwd~~~~~----~~~~~~~~~~~~~  246 (612)
                      |+.+   ++  ....+.      +|...+..++|+|||+.++.....   +..|.+||+.+++    ......+....+.
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~  313 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT  313 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence            9998   73  233443      378889999999999966655322   2379999999876    2211111112222


Q ss_pred             cee----EEeEEecCCccCCCCcEEE-EEec-CC--cEEEEECCCccee
Q 007234          247 AVF----MDCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEEL  287 (612)
Q Consensus       247 ~~~----~~~~~~~~~~~~~~~~~l~-t~s~-dg--~i~iwd~~~~~~~  287 (612)
                      ..+    .....|+     |||+.++ ..+. +|  .|++||..+++..
T Consensus       314 ~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          314 GWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             SCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             ceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            221    1234566     9999877 6654 44  6888888776544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=2.9e-16  Score=160.80  Aligned_cols=279  Identities=14%  Similarity=0.050  Sum_probs=176.0

Q ss_pred             EEcCCCCEEEEEeC----CCcEEEEEC--CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           12 SFSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        12 ~fspdg~~las~s~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      +..+...++..|+.    ++.|.+|++  .+++.......+...+..++|+++                           
T Consensus         8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spd---------------------------   60 (361)
T 3scy_A            8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSAD---------------------------   60 (361)
T ss_dssp             CGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTT---------------------------
T ss_pred             hhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCC---------------------------
Confidence            34445556666643    567889865  566654332223333344444444                           


Q ss_pred             CcEEEEEECC----CcEEEEEcCC--CeE--EEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEE--
Q 007234           86 SSLLVLGTGG----GDVLALAVSA--GQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK--  154 (612)
Q Consensus        86 ~~~l~~gs~~----g~I~vwd~~~--~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~--  154 (612)
                      +++|++++.+    |.|.+|++..  +..  +... ..+......+++  +++++++++ .++.|.+|++.....+..  
T Consensus        61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~  137 (361)
T 3scy_A           61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS  137 (361)
T ss_dssp             SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred             CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence            7788888875    7899998865  443  2222 234556777887  788877776 578999999875432211  


Q ss_pred             --Ee--c--------CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe-------e------EEEEecCCCCEEEEE
Q 007234          155 --FR--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK-------K------MQKFSGHPGAVRFMT  206 (612)
Q Consensus       155 --~~--~--------~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~-------~------~~~~~~h~~~v~~l~  206 (612)
                        +.  +        +...+.+++|+|||+++++++   +.|++|++....       .      ......+...+..++
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  217 (361)
T 3scy_A          138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLI  217 (361)
T ss_dssp             EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEE
T ss_pred             eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEE
Confidence              11  1        112358899999999776654   799999887543       1      111223445678999


Q ss_pred             EeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC--CcEEEEECC--
Q 007234          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ--  282 (612)
Q Consensus       207 ~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d--g~i~iwd~~--  282 (612)
                      |+|+|+++++++..++.|.+|++.++....................+.|+     |||++|++++.+  +.|.+|++.  
T Consensus       218 ~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~~~  292 (361)
T 3scy_A          218 FNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVDET  292 (361)
T ss_dssp             ECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEECTT
T ss_pred             EcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEcCC
Confidence            99999988887756899999999866432111111111222233566777     999998777664  899999975  


Q ss_pred             CcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc
Q 007234          283 NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV  362 (612)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~  362 (612)
                      +++...        +.                                             .+.. ...+..++|||||+
T Consensus       293 ~g~~~~--------~~---------------------------------------------~~~~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          293 NGTLTK--------VG---------------------------------------------YQLT-GIHPRNFIITPNGK  318 (361)
T ss_dssp             TCCEEE--------EE---------------------------------------------EEEC-SSCCCEEEECTTSC
T ss_pred             CCcEEE--------ee---------------------------------------------EecC-CCCCceEEECCCCC
Confidence            222100        00                                             0111 12456789999999


Q ss_pred             eEeccccceeeecceee
Q 007234          363 LLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       363 ~l~~s~s~d~~~~~w~~  379 (612)
                      +|.+++..++.+.+|.+
T Consensus       319 ~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          319 YLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEE
Confidence            98555557889999876

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=8.7e-17  Score=168.82  Aligned_cols=196  Identities=11%  Similarity=0.083  Sum_probs=141.7

Q ss_pred             cccceeEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------cE---EEEeeccCCccccccccccccccccccce
Q 007234            4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QV---QTEFADIASTETTSLYGNRLEREHLSVDY   68 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~la----s~s~dg~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~   68 (612)
                      ++|+++  +|+|+|++||    +|+.|++|+|||+.++        +.   ...+.+|.                  ..+
T Consensus        93 ~~v~~l--~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~------------------~~V  152 (434)
T 2oit_A           93 FPIHHL--ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG------------------GMV  152 (434)
T ss_dssp             SCEEEE--EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG------------------GSE
T ss_pred             CcccEE--EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC------------------Cce
Confidence            356544  9999999999    7788999999998765        11   22233233                  345


Q ss_pred             eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~  148 (612)
                      .++.|.+.+        +.++++|+.||.|++||++++...... .+|...|++++|+|+|++|++|+.||+|++||++ 
T Consensus       153 ~~v~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-  222 (434)
T 2oit_A          153 IDMKWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-  222 (434)
T ss_dssp             EEEEECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred             EEEEECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence            667776654        678999999999999999998766444 4588999999999999999999999999999998 


Q ss_pred             CceeEEEecCC-------CCeeEEEECCCCCEEEEeC---C------eEEEEEcCCCe-----eEEEEe-------cCCC
Q 007234          149 GSLLGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHK-----KMQKFS-------GHPG  200 (612)
Q Consensus       149 ~~~~~~~~~~~-------~~v~~l~~spdg~~l~~~~---g------~i~lwd~~~~~-----~~~~~~-------~h~~  200 (612)
                      ++....+..+.       ..+.+++|++++.++++.+   |      .+++|++...+     ....+.       +...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~  302 (434)
T 2oit_A          223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ  302 (434)
T ss_dssp             CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred             CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence            66666665432       2789999999998886544   2      39999997642     122221       2223


Q ss_pred             CEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          201 AVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       201 ~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      +-..+.+.++.+++++++.....|.+...
T Consensus       303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          303 HHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             cceeeehhccCCEEEEecCCCCceeEEEe
Confidence            33334444777777777755666666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=2.5e-16  Score=159.77  Aligned_cols=145  Identities=17%  Similarity=0.170  Sum_probs=113.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCC-----
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST-----  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~-----  159 (612)
                      +.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|+.++ +++.++.|.+||+.+++.+..+....     
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~   90 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   90 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence            678899999999999999999988776433323688999999998765 45578999999999998887776433     


Q ss_pred             -CCeeEEEECCCCCEEEEeC--------------CeEEEEEcCCCe---eEEEEecCCCCEEEEEEeeCCcEEEEEEcCC
Q 007234          160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (612)
Q Consensus       160 -~~v~~l~~spdg~~l~~~~--------------g~i~lwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d  221 (612)
                       ..+.+++|+|||+++++++              +.|++||+.+++   .+..+. +...+.+++|+|+|+ +++++ . 
T Consensus        91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~-~-  166 (349)
T 1jmx_B           91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG-P-  166 (349)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES-S-
T ss_pred             cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc-C-
Confidence             2378899999999998876              799999998853   334444 344688899999999 55543 3 


Q ss_pred             CeEEEEEcCCCccc
Q 007234          222 RYIALWRTDGVKKQ  235 (612)
Q Consensus       222 ~~i~vwd~~~~~~~  235 (612)
                       .|.+||+.+++..
T Consensus       167 -~i~~~d~~~~~~~  179 (349)
T 1jmx_B          167 -DIYKMDVKTGKYT  179 (349)
T ss_dssp             -SEEEECTTTCCEE
T ss_pred             -cEEEEeCCCCcee
Confidence             3999999887643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=7.2e-16  Score=158.22  Aligned_cols=191  Identities=15%  Similarity=0.086  Sum_probs=131.5

Q ss_pred             CcEEEEEECCCcEEEEEcC-CCeEEEEeccCCCCCeEEEEEecCCCE--EEEEe-------------cCCcEEEEECC-C
Q 007234           86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~s-------------~dg~v~iwd~~-~  148 (612)
                      ++++++++.+ .|.+|++. +++..........+.+.+++|+|+|++  +++++             .++++.+|++. .
T Consensus        51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~  129 (365)
T 1jof_A           51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET  129 (365)
T ss_dssp             SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred             CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence            7788888887 99999997 777643221111123567899999994  45553             68999999997 4


Q ss_pred             CceeEEEec----CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC-CCeeE--EEEe--cCCCCEEEEEEeeCCcEEEE
Q 007234          149 GSLLGKFRA----STKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       149 ~~~~~~~~~----~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~-~~~~~--~~~~--~h~~~v~~l~~sp~~~~l~s  216 (612)
                      ++....+..    +...+.+++|+|||+++++++   +.|++||+. +++..  ..+.  .|...+..++|+|+|+++++
T Consensus       130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence            665544432    445789999999999888764   699999998 77643  3343  24567899999999999988


Q ss_pred             EEcCCCeEEEEEcCC--Ccccc-ceeeEeecCC--c-e-------eEEeEE-ecCCccCCCCcEEEEEecC-C-----cE
Q 007234          217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP--A-V-------FMDCRC-IDNGGVDDAGLYVLAISET-G-----VC  276 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~--~-~-------~~~~~~-~~~~~~~~~~~~l~t~s~d-g-----~i  276 (612)
                      ++..++.|.+|+++.  ++... ...+..+...  . .       ....+. ++     |||++|++++.+ +     .|
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i  284 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence            775578999998763  43210 0011111111  0 1       345566 77     999998877653 2     89


Q ss_pred             EEEECC
Q 007234          277 YIWYGQ  282 (612)
Q Consensus       277 ~iwd~~  282 (612)
                      .+|++.
T Consensus       285 ~v~~~~  290 (365)
T 1jof_A          285 AGFKLR  290 (365)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=6.8e-15  Score=145.27  Aligned_cols=240  Identities=15%  Similarity=0.198  Sum_probs=165.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++++|+|+++++...++.|.+||.. ++.+..+.....           ..++. .....+++.+.+        +.++
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~-----------~~~~~-~~p~~i~~~~~~--------g~l~   92 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-----------RDSQL-LYPNRVAVVRNS--------GDII   92 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-----------STTCB-SSEEEEEEETTT--------TEEE
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC-----------Ccccc-cCceEEEEEcCC--------CeEE
Confidence            45999999988888889999999987 666666542110           00111 123344443222        4444


Q ss_pred             EEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe--cCCCCeeEEE
Q 007234           90 VLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCMA  166 (612)
Q Consensus        90 ~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~  166 (612)
                      ++... ++.|.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|.+||. .++.+..+.  .+...+.+++
T Consensus        93 v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~  170 (286)
T 1q7f_A           93 VTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV  170 (286)
T ss_dssp             EEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred             EEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence            44433 78899999 5677666664445567899999999987777778899999995 466666664  2344689999


Q ss_pred             ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCC-eEEEEEcCCCccccceeeE
Q 007234          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~~  241 (612)
                      ++|+|+++++..  +.|++||. .++.+..+..+  ...+..++++|+|+++++.. .++ .|.+|+... +..   ..+
T Consensus       171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g-~~~---~~~  244 (286)
T 1q7f_A          171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDG-QLI---SAL  244 (286)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTS-CEE---EEE
T ss_pred             ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCC-CEE---EEE
Confidence            999999877765  79999997 45566666543  36789999999998777765 565 999999643 322   122


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ...........++++     ++|+++++ +.|+.|++|+....
T Consensus       245 ~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          245 ESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred             cccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence            222222234456676     89987666 67999999987553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=3e-16  Score=162.34  Aligned_cols=235  Identities=9%  Similarity=0.027  Sum_probs=155.0

Q ss_pred             cceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            6 IRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         6 V~~l~~~fspdg~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +..+  +|||||++||.+...   ..|.+||..+++......+.........|+++                        
T Consensus        38 ~~~~--~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd------------------------   91 (396)
T 3c5m_A           38 FYQK--CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD------------------------   91 (396)
T ss_dssp             TTSC--CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT------------------------
T ss_pred             eecC--cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC------------------------
Confidence            4445  899999999877653   36888899988765433222111111333443                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEE-------------------EEEecCCCEEEEE-----ecC
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GAD  138 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~l~s~-----s~d  138 (612)
                         ++.|+.++.++.|++||+.+++..... ..+......                   +.|+|+++.++.+     ..+
T Consensus        92 ---g~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~  167 (396)
T 3c5m_A           92 ---ERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT  167 (396)
T ss_dssp             ---SSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred             ---CCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence               788999999999999999988765333 323332222                   3456666665543     356


Q ss_pred             CcEEEEECCCCceeEEEecCCCCeeEEEECC-CCCEEEEeC--------CeEEEEEcCCCeeEEEEecC--CCCEEEEEE
Q 007234          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTF  207 (612)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~  207 (612)
                      ..|++||+.+++..... .+...+..+.|+| +++.++..+        ..|++||+.+++.. .+..+  ...+..+.|
T Consensus       168 ~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFW  245 (396)
T ss_dssp             EEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEE
T ss_pred             ceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEE
Confidence            68999999988765554 3566789999999 788766543        26889998766533 33333  235788999


Q ss_pred             eeCCcEEEEEEcCC----CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEe-----------
Q 007234          208 SDNGKYVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-----------  271 (612)
Q Consensus       208 sp~~~~l~s~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s-----------  271 (612)
                      +|+|++|+.++..+    +.|.+||+.+++..   .+...  +..  . ..|+     | ||+++++++           
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~--~~~--~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENE---EVMVM--PPC--S-HLMS-----NFDGSLMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             CTTSSCEEEEEEETTTCCEEEEEECTTTCCEE---EEEEC--CSE--E-EEEE-----CSSSSEEEEEECCC--------
T ss_pred             CCCCCEEEEEecCCCCccceEEEEECCCCCeE---EeeeC--CCC--C-CCcc-----CCCCceEEEecCCcceeecccc
Confidence            99999877765322    45999999887643   22221  221  2 5565     7 999888765           


Q ss_pred             -----cCCcEEEEECCCcc
Q 007234          272 -----ETGVCYIWYGQNIE  285 (612)
Q Consensus       272 -----~dg~i~iwd~~~~~  285 (612)
                           .++.|++||+.+++
T Consensus       313 ~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             --CCCCCCEEEEEETTTTB
T ss_pred             ccccCCCCcEEEEecccCc
Confidence                 24689999987765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=2.3e-16  Score=177.05  Aligned_cols=275  Identities=13%  Similarity=0.059  Sum_probs=177.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCC---CeEEEEEecCCCEEEEEec---------CCcEEEEECCCCceeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~s~---------dg~v~iwd~~~~~~~~  153 (612)
                      +. ++..+.+|+|++||+.+++....+ ..|..   .+.+++|||||++|++++.         ++.|++||+.+++.+.
T Consensus        27 g~-~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~  104 (719)
T 1z68_A           27 QE-YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR  104 (719)
T ss_dssp             SE-EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred             Ce-EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence            53 455557999999999999876444 33433   4899999999999998876         7899999999887631


Q ss_pred             EEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEE-ecCCCCE-----------------EEEEEeeCCcEE
Q 007234          154 KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV-----------------RFMTFSDNGKYV  214 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v-----------------~~l~~sp~~~~l  214 (612)
                      ... ....+.+++|||||+.|+.+. +.|++||+.+++..+.. .++...|                 .+++|||||++|
T Consensus       105 ~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l  183 (719)
T 1z68_A          105 GNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL  183 (719)
T ss_dssp             SSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred             cee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence            111 124688999999999999888 99999999988765422 2333323                 479999999999


Q ss_pred             EEEEcCCC---------------------------------eEEEEEcCCCccccceee---EeecCCceeEEeEEecCC
Q 007234          215 LSSAVGER---------------------------------YIALWRTDGVKKQSASCV---LAMEHPAVFMDCRCIDNG  258 (612)
Q Consensus       215 ~s~s~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  258 (612)
                      ++++..++                                 .|++||+.+++......+   ..+..+...+..+.|+  
T Consensus       184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--  261 (719)
T 1z68_A          184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV--  261 (719)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES--
T ss_pred             EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe--
Confidence            98874221                                 788999988753100000   1122345556677787  


Q ss_pred             ccCCCCcEEEEEecC----CcEEEEE----CCCcceecccC----CceeEee----cccccCCCCcccchhhhc--cccc
Q 007234          259 GVDDAGLYVLAISET----GVCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKSQKSATAAIFA--AKLQ  320 (612)
Q Consensus       259 ~~~~~~~~l~t~s~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~s~~~~~~~~~i~~--~~~d  320 (612)
                         ||++++++....    ..|.+||    ..+++......    .....+.    ....++|+++    .++.  +..+
T Consensus       262 ---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~  334 (719)
T 1z68_A          262 ---TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI----SYYKIFSDKD  334 (719)
T ss_dssp             ---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS----CEEEEEECTT
T ss_pred             ---CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC----eEEEEEEccC
Confidence               998877775433    2488899    87776554331    1111111    0223778877    3332  2233


Q ss_pred             ceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccc----eeeecceeee
Q 007234          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ  380 (612)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~----d~~~~~w~~~  380 (612)
                      +     ..++++.+-..  .....+..+...+..+.++ ||+.+.+++..    ++..++|.+.
T Consensus       335 g-----~~~l~~~~~~~--~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          335 G-----YKHIHYIKDTV--ENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             S-----CEEEEEESSCS--TTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             C-----ceEEEEEECCC--CceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            3     12333332111  1133455566668888888 88888566654    4778888763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=4.4e-15  Score=150.02  Aligned_cols=239  Identities=8%  Similarity=0.081  Sum_probs=168.2

Q ss_pred             ccceeEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCcEEEEeeccCCcccccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE   60 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~   60 (612)
                      .+..+  +++|+|+++++.+.+                        ++|.+||..+++.+..+...              
T Consensus        25 ~v~~v--a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--------------   88 (329)
T 3fvz_A           25 QVSGV--ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN--------------   88 (329)
T ss_dssp             CEEEE--EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--------------
T ss_pred             CceEE--EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--------------
Confidence            45445  999999999888777                        47999999999987655311              


Q ss_pred             ccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCe-EEEEec--------cCCCCCeEEEEEec-CCC
Q 007234           61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-HGS  130 (612)
Q Consensus        61 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~-~~~~~~--------~~h~~~V~~l~~sp-~~~  130 (612)
                        + ......+++.+.         +.++++...++.|++||..... .+..+.        .++-....+++|+| ++.
T Consensus        89 --~-~~~p~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           89 --L-FYLPHGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             --T-CSSEEEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred             --c-cCCceEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence              0 011223333322         6777777888999999986553 333432        24455789999999 787


Q ss_pred             EEEEEe-cCCcEEEEECCCCceeEEEecCC----------CCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEe
Q 007234          131 CIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFS  196 (612)
Q Consensus       131 ~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~  196 (612)
                      .+++.+ .++.|++|| .+++.+..+....          ..+..++++|+ +.++++..  +.|++||..+++.+..+.
T Consensus       157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            777776 689999999 5777777764322          23899999999 66555554  799999999899888884


Q ss_pred             --cCCCCEEEEEEeeCCcEEEEEE------cCCCeEEEEEcCCCccccceeeEee---cCCceeEEeEEecCCccCCCCc
Q 007234          197 --GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDAGL  265 (612)
Q Consensus       197 --~h~~~v~~l~~sp~~~~l~s~s------~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  265 (612)
                        .+...+..++|+| +..+.+.+      ..+..|++|+..+++..     ..+   .........++++     ++|.
T Consensus       236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~~p~~ia~~-----~dG~  304 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----DVFKPVRKHFDMPHDIVAS-----EDGT  304 (329)
T ss_dssp             CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----EEECCSSSCCSSEEEEEEC-----TTSE
T ss_pred             ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----EEEcCCCCccCCeeEEEEC-----CCCC
Confidence              4566788999999 43333222      12448999999888644     222   1233345667776     9998


Q ss_pred             EEEEEecCCcEEEEECCC
Q 007234          266 YVLAISETGVCYIWYGQN  283 (612)
Q Consensus       266 ~l~t~s~dg~i~iwd~~~  283 (612)
                      .+++...++.|++|++..
T Consensus       305 lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEESSSCCEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            888888899999999754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=5.2e-15  Score=164.37  Aligned_cols=250  Identities=9%  Similarity=0.036  Sum_probs=162.4

Q ss_pred             CcccceeEEEEcCCCCEEEEE--eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee-cccc
Q 007234            3 SSNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRK   79 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~   79 (612)
                      +..|+.+  +||+++-++++.  +.+++..||....+.....+..+...+.....         ........|.. ++  
T Consensus        23 ~~~~~~~--~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~SPD--   89 (662)
T 3azo_A           23 SGRPACV--GAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVF---------EYSGFPWAGVPRPA--   89 (662)
T ss_dssp             CSCCEEE--EEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGG---------GTCCCCEEEECCSS--
T ss_pred             CCcccee--EEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccccccc---------ccCCccceeeeecC--
Confidence            3456555  899887777777  55889999986545445555544332221100         00111234541 33  


Q ss_pred             cccccCCcE-EEEEEC-CCcEEEEEcC--C-CeEEEEeccC----CCCCeEEEEEecCCCEEEEEecC----------Cc
Q 007234           80 KKRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GM  140 (612)
Q Consensus        80 ~~~~~~~~~-l~~gs~-~g~I~vwd~~--~-~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s~d----------g~  140 (612)
                            ++. |+.++. ++.|.++++.  + +.. ..+...    |...+.+++|+|||+.|++++.|          ..
T Consensus        90 ------g~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           90 ------GGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             ------SSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred             ------CCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence                  555 555443 5667778776  3 443 244321    66788999999999999998877          58


Q ss_pred             EEEEECCC------CceeEEEe-cCCCCeeEEEECCCCCEEEEeC--C--------eEEEEEcC-CC---eeEEEEecCC
Q 007234          141 VCEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA--G--------QLKTFNCS-DH---KKMQKFSGHP  199 (612)
Q Consensus       141 v~iwd~~~------~~~~~~~~-~~~~~v~~l~~spdg~~l~~~~--g--------~i~lwd~~-~~---~~~~~~~~h~  199 (612)
                      |++||+.+      ++. ..+. .+...+..++|+|||++|+.++  +        .|++||+. ++   +......+|.
T Consensus       163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~  241 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE  241 (662)
T ss_dssp             EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence            99999987      544 4444 5556788899999999998765  2        79999999 57   4444445567


Q ss_pred             CCEEEEEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCcee--------EEeEEecCCccCCCCcEEEE
Q 007234          200 GAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLA  269 (612)
Q Consensus       200 ~~v~~l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~t  269 (612)
                      ..+..+.|+|||++++++. .++  .|.+||+.+++..     ....++...        ...+.++     ++++++++
T Consensus       242 ~~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~  310 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT-----QLCRREEEFAGPLWTPGMRWFAPL-----ANGLIAVV  310 (662)
T ss_dssp             BCEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE-----ESSCCSSBSSCCCCSTTCCSEEEC-----TTSCEEEE
T ss_pred             ceEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee-----ecccccccccCccccccCceEeEe-----CCCEEEEE
Confidence            8899999999999666554 677  5666666555422     111111111        2345565     88999999


Q ss_pred             EecCCcEEEE--ECCCcc
Q 007234          270 ISETGVCYIW--YGQNIE  285 (612)
Q Consensus       270 ~s~dg~i~iw--d~~~~~  285 (612)
                      ++. |.+++|  |..+++
T Consensus       311 ~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          311 HGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EBS-SSCEEEEEETTTTE
T ss_pred             EEc-CccEEEEEECCCCc
Confidence            998 999999  555444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.68  E-value=7.4e-16  Score=168.54  Aligned_cols=183  Identities=9%  Similarity=-0.027  Sum_probs=130.3

Q ss_pred             CcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCC---CceeEEEecC
Q 007234           86 SSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLT---GSLLGKFRAS  158 (612)
Q Consensus        86 ~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~---~~~~~~~~~~  158 (612)
                      ++.|+.++. +|++.||++.+++.. ++...+...+.+++|+|| +.+++++.   +...++|.+..   +... .+.. 
T Consensus        33 G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-  108 (582)
T 3o4h_A           33 GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-  108 (582)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-
T ss_pred             CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-
Confidence            778888776 999999999777664 454444468999999999 77777765   45556654432   3222 3332 


Q ss_pred             CCCeeEEEECCCCCE--EEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC----CeEEEEEcCC
Q 007234          159 TKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDG  231 (612)
Q Consensus       159 ~~~v~~l~~spdg~~--l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d----~~i~vwd~~~  231 (612)
                      ...+...+|+|||+.  ++++. +.+.+||+.+++.......+ .  .+++|+|||+++++++ .+    +.|++||+.+
T Consensus       109 ~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~-~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          109 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLG-FFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEE-EEETTEEEEEEEETTT
T ss_pred             CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEE-EcCCCCeEEEEEcCCC
Confidence            224456788888864  44444 66779999998765554433 3  7899999999999776 35    6899999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC--cEEEEECCCccee
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEEL  287 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iwd~~~~~~~  287 (612)
                      ++..      .+..+........|+     |||++|+++..+|  .|++||+.+++..
T Consensus       185 g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          185 GGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            7643      233344445677787     9999999888888  8999999877653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=2.4e-14  Score=144.60  Aligned_cols=242  Identities=12%  Similarity=0.108  Sum_probs=164.9

Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         1 ~~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      |.+..|.++  +|+|++..++..+.++.++.|   .++....+..+...                  ..++.|.+.    
T Consensus         3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~----   55 (333)
T 2dg1_A            3 MSQQDLPTL--FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQ------------------LEGLNFDRQ----   55 (333)
T ss_dssp             ---CCCCBC--CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCC------------------EEEEEECTT----
T ss_pred             cccccccee--eecCCccceeEEeecccCccc---ccceeEEEeccCcc------------------ccCcEECCC----
Confidence            346678767  999999888877888999999   34555555433222                  234555432    


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC----CcEEEEECCCCceeEEEe
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~  156 (612)
                           +.+++++..++.|.+||+.+++..... ..+...+.+++++|+|++++++..+    +.|.+||..+++....+.
T Consensus        56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~  129 (333)
T 2dg1_A           56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  129 (333)
T ss_dssp             -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence                 677777888899999999988765433 2456789999999999877777666    689999998776554443


Q ss_pred             --cCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       157 --~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                        .....+.+++++|+|+++++..        +.|+.+|..+++... +..+...+..++|+|+|+.++.+...++.|.+
T Consensus       130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence              2345789999999999888765        356666666554433 33334457899999999877666546789999


Q ss_pred             EEcCC-Cccccc---eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          227 WRTDG-VKKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       227 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      |++.+ +.....   ........ ......++++     ++|++.++...++.|.+||..
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID-----SDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB-----TTCCEEEEEETTTEEEEECTT
T ss_pred             EEecCCCcCcccccceEEEecCC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEECCC
Confidence            99964 221100   00111111 1345566776     889888877778999999873

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=2.5e-14  Score=146.29  Aligned_cols=291  Identities=10%  Similarity=0.041  Sum_probs=186.4

Q ss_pred             CCCCEEEEEe------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        15 pdg~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      |+++++....      .|+.|.+||..+++.+..+.....+  .+.|+++                           +++
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~   63 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK   63 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence            3677666553      3679999999999988877643322  3444444                           777


Q ss_pred             EEEEEC----------CCcEEEEEcCCCeEEEEeccC-----CCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCce
Q 007234           89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL  151 (612)
Q Consensus        89 l~~gs~----------~g~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~  151 (612)
                      +++++.          ++.|.+||+.+++.+.++...     +......++|+|+|++|++++.  +++|.+||+.+++.
T Consensus        64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY  143 (361)
T ss_dssp             EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred             EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence            888763          566999999999887766421     2345778999999999999874  58999999999988


Q ss_pred             eEE-EecCCCCeeEEEECCCC-CEEEEeC--CeEEEEEcCC-CeeEEE------EecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       152 ~~~-~~~~~~~v~~l~~spdg-~~l~~~~--g~i~lwd~~~-~~~~~~------~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      +.. +...  ....+.+.|++ ..+++.+  |.+.+|+... ++....      +..+..++ .+.++|++..++..+ .
T Consensus       144 ~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~  219 (361)
T 2oiz_A          144 VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y  219 (361)
T ss_dssp             EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred             EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence            877 5532  23446677876 3444333  8888888865 554422      22222332 344578887777776 6


Q ss_pred             CCeEEEEEcCCCccccceeeEeec-------CCcee---EEeEEecCCccCCCCcEEEEEec-----------CCcEEEE
Q 007234          221 ERYIALWRTDGVKKQSASCVLAME-------HPAVF---MDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIW  279 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~l~t~s~-----------dg~i~iw  279 (612)
                      ++.+.++|+......   ......       .....   ...+.++     ++++.++++..           ++.|.+|
T Consensus       220 ~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          220 YGNVYSADFSGDEVK---VDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             TSEEEEEECSSSSCE---EEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CCeEEEEEecCCCce---ecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            899999998765422   111100       00000   1124555     88888777654           3489999


Q ss_pred             ECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC--ceEEEeeccCCCeEEEEe
Q 007234          280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNC  357 (612)
Q Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~l~~  357 (612)
                      |..+++.+..+....   .....++|+++    .+++++. +.+..+|        ....  ....++..+...-..+++
T Consensus       292 D~~t~~~v~~i~~~~---p~~ia~spdg~----~l~v~n~-~~v~v~D--------~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD---ALSMTIDQQRN----LMLTLDG-GNVNVYD--------ISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             ETTTTEEEEEEECTT---CCEEEEETTTT----EEEEECS-SCEEEEE--------CSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             ECCCCcEEEEEecCC---eeEEEECCCCC----EEEEeCC-CeEEEEE--------CCCCcceeeEEeccCCCCcEEEEe
Confidence            999999887665443   22223688888    5555553 4333332        2222  344455455666788999


Q ss_pred             cCCCc
Q 007234          358 SQDGV  362 (612)
Q Consensus       358 S~dg~  362 (612)
                      +|||.
T Consensus       356 ~p~G~  360 (361)
T 2oiz_A          356 HPVGG  360 (361)
T ss_dssp             CCCSC
T ss_pred             cCCCC
Confidence            99986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.63  E-value=3.9e-14  Score=146.14  Aligned_cols=218  Identities=13%  Similarity=0.095  Sum_probs=154.8

Q ss_pred             EEEECCCCcEEEEeeccCCcccc-----ccccccccccccccceeEEEeeecccccccccCCcEEEEEEC-CCc--EEEE
Q 007234           30 KIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGD--VLAL  101 (612)
Q Consensus        30 ~iwd~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-~g~--I~vw  101 (612)
                      ..+|..+|..+..+..+......     ..|+++                           ++.|+.++. +|.  |.+|
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~   65 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLL   65 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEE
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEE
Confidence            34588888888888766543333     444544                           777887777 664  8899


Q ss_pred             EcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEE--ECCCCCEEEEe--
Q 007234          102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA--  177 (612)
Q Consensus       102 d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~--~spdg~~l~~~--  177 (612)
                      |+.+++.. .+..++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..  
T Consensus        66 d~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  144 (388)
T 3pe7_A           66 DLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEI  144 (388)
T ss_dssp             ETTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred             eCCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccc
Confidence            99998876 44455666666788999999999999999999999999988777776665554444  48999998742  


Q ss_pred             --------------------C--CeEEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEcC-----CCeEEEEEc
Q 007234          178 --------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRT  229 (612)
Q Consensus       178 --------------------~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~-----d~~i~vwd~  229 (612)
                                          .  +.|++||+.+++.. .+..+...+..+.|+| ||+.++.++..     ...|.++|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                                1  57999999998654 4455677899999999 99988877632     236777887


Q ss_pred             CCCccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEec-CC----cEEEEECCCcce
Q 007234          230 DGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEE  286 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s~-dg----~i~iwd~~~~~~  286 (612)
                      .++...   .+  ..+. ...+....|+     |||+.|+..+. ++    .|++||+.+++.
T Consensus       224 ~~~~~~---~l--~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          224 DGTNMR---KV--KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TSCCCE---ES--CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCceE---Ee--eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            665432   11  1122 1344456676     99998766544 22    399999988764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=5.5e-13  Score=143.69  Aligned_cols=233  Identities=9%  Similarity=-0.010  Sum_probs=166.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEE
Q 007234           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        13 fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g   92 (612)
                      .+|.+.++++...+++|.++|..+++.+.++.... .+..+.|+++                           +++++++
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpD---------------------------Gr~lyv~  214 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVI  214 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCC---------------------------CCEEEEE
Confidence            34445566677779999999999999998886322 2223344444                           8889999


Q ss_pred             ECCCcEEEEEcC--CCeEEEEeccCCCCCeEEEEEe----cCCCEEEEEe-cCCcEEEEECCCCceeEEEecC-------
Q 007234           93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------  158 (612)
Q Consensus        93 s~~g~I~vwd~~--~~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-------  158 (612)
                      +.+|.|.+||+.  +++.+.++..  ......++|+    |||+++++++ .+++|.++|..+.+.+..+...       
T Consensus       215 ~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~  292 (567)
T 1qks_A          215 GRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ  292 (567)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred             cCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence            999999999996  7887777643  3457899999    6999988776 4589999999999998877532       


Q ss_pred             ----CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       159 ----~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                          ...+..+..++++..++...   |.|.++|..+.+.  +..+ ........+.|+|+|+++++++..++.|.++|+
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence                12678899999877666553   8999999987643  2233 234457788999999999888767889999999


Q ss_pred             CCCccccceee-EeecCCceeEEeEEecCCccCCCCcEEEEEe--cCCcEEEEECCC
Q 007234          230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQN  283 (612)
Q Consensus       230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s--~dg~i~iwd~~~  283 (612)
                      .+++......+ ....|+.....  ++.     |++..+.+.+  .++.|.++|..+
T Consensus       372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence            98875421111 11233332222  234     7755554443  368999999887

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=9.1e-14  Score=156.37  Aligned_cols=197  Identities=13%  Similarity=0.089  Sum_probs=140.2

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCC-----eEEEEEecCCCEEEEEecC----
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-----VSAISFATHGSCIYSAGAD----  138 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~s~d----  138 (612)
                      ...+.|.+.         +.+++++  +|+|++||+.++++...+ .+|...     ..++.|||||++|+.++.+    
T Consensus        19 ~~~~~w~~d---------g~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~   86 (740)
T 4a5s_A           19 LYSLRWISD---------HEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (740)
T ss_dssp             CCCEEECSS---------SEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             ccccEECCC---------CcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence            345677765         5667775  999999999999986443 555432     2458899999999998876    


Q ss_pred             -----CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEE-EecCCCCE---------
Q 007234          139 -----GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK-FSGHPGAV---------  202 (612)
Q Consensus       139 -----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~-~~~h~~~v---------  202 (612)
                           +.+.+||+.+++... +..+...+...+|||||+.||.+. +.|++||+.+++..+. ..++...+         
T Consensus        87 r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           87 RHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             SSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence                 566799999987643 555667899999999999999887 8999999988875432 22333333         


Q ss_pred             --------EEEEEeeCCcEEEEEEcCCC-----------------------------------eEEEEEcCC---Ccccc
Q 007234          203 --------RFMTFSDNGKYVLSSAVGER-----------------------------------YIALWRTDG---VKKQS  236 (612)
Q Consensus       203 --------~~l~~sp~~~~l~s~s~~d~-----------------------------------~i~vwd~~~---~~~~~  236 (612)
                              ..+.|||||++|+..+..++                                   .|++||+.+   ++.. 
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-
Confidence                    34899999999998753222                                   477788877   5311 


Q ss_pred             ceeeEeec------CCceeEEeEEecCCccCCCCcEEEEEec----CCcEEEEECCCcc
Q 007234          237 ASCVLAME------HPAVFMDCRCIDNGGVDDAGLYVLAISE----TGVCYIWYGQNIE  285 (612)
Q Consensus       237 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~t~s~----dg~i~iwd~~~~~  285 (612)
                        ....+.      .+...+..+.|+     |||+.++....    +..|.+||+.+++
T Consensus       245 --~~~~l~~~~~~~~~~~~~~~~~ws-----pdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          245 --TSIQITAPASMLIGDHYLCDVTWA-----TQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             --CEEEECCCHHHHTSCEEEEEEEEE-----ETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             --eEEEecCCccCCCCCeEEEEEEEe-----CCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence              011121      144556667787     99997766543    2379999998887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=2.4e-13  Score=139.09  Aligned_cols=237  Identities=12%  Similarity=0.080  Sum_probs=161.3

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccC------CccccccccccccccccccceeEEEe
Q 007234           10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus        10 ~~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      .++|||||++++++.          .++.|.+||..+++.+.++....      .....+.++++               
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd---------------  118 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD---------------  118 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence            349999999998876          26789999999999988876431      22333444444               


Q ss_pred             eecccccccccCCcEEEEEEC--CCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCC-
Q 007234           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT-  148 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~-  148 (612)
                                  +++++++..  ++.|.+||+.+++.+.. +..   .....+.+.|++ ..+++.+.||.+.+|+... 
T Consensus       119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence                        778888874  57799999999998876 532   223446677866 5688889999999999865 


Q ss_pred             CceeEEE------ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe--eEEEEec------CC----CCEEEEEEe
Q 007234          149 GSLLGKF------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSG------HP----GAVRFMTFS  208 (612)
Q Consensus       149 ~~~~~~~------~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~--~~~~~~~------h~----~~v~~l~~s  208 (612)
                      ++.....      .....+ ..+.++|++..++..+  +.++++|+....  ....+.-      +.    .....++|+
T Consensus       184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~  262 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH  262 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred             CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence            5544222      111222 2333456776666555  899999987553  2222221      01    111137899


Q ss_pred             eCCcEEEEEEc----------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234          209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (612)
Q Consensus       209 p~~~~l~s~s~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i  278 (612)
                      |+++.++++..          .++.|.+||+.+.+..     ..+..+.  ...+.++     |||++|++++. +.|.+
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence            99888877642          1348999999988644     3333333  5566777     99999998887 99999


Q ss_pred             EECCCc--ceeccc
Q 007234          279 WYGQNI--EELRNT  290 (612)
Q Consensus       279 wd~~~~--~~~~~~  290 (612)
                      ||..++  +.+..+
T Consensus       330 ~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          330 YDISQPEPKLLRTI  343 (361)
T ss_dssp             EECSSSSCEEEEEE
T ss_pred             EECCCCcceeeEEe
Confidence            999999  877654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=3.6e-13  Score=135.91  Aligned_cols=223  Identities=11%  Similarity=0.027  Sum_probs=152.7

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc-eeEEEe---------cCCCCeeEE
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM  165 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~l  165 (612)
                      +.|.+||..+++.......++-....+++++|+|+.+++.+.++.|++||..... .+..+.         .+...+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4799999999998876655566789999999999988888889999999975432 555552         233468999


Q ss_pred             EECC-CCCEEEEeC---CeEEEEEcCCCeeEEEEecC----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       166 ~~sp-dg~~l~~~~---g~i~lwd~~~~~~~~~~~~h----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      +++| +|.++++.+   +.|++|| .+++.+..+...          -.....++++|++..++.+...++.|++|+..+
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            9999 888888873   7999999 567777766422          234789999999444444455789999999986


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCC------CCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCC
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD------AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~  305 (612)
                      ++..   ..............+.++     |      +|+..++...++.|++|+..+++.+..+.+             
T Consensus       228 G~~~---~~~~~~~~~~~~~~~~~~-----pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-------------  286 (329)
T 3fvz_A          228 KEFV---REIKHASFGRNVFAISYI-----PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-------------  286 (329)
T ss_dssp             CCEE---EEECCTTTTTCEEEEEEE-----TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-------------
T ss_pred             CcEE---EEEeccccCCCcceeeec-----CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-------------
Confidence            6543   112112222223345555     5      223222223345788888777665432110             


Q ss_pred             CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                             ...+......++++|||.++ ++...++.+++|+..
T Consensus       287 ---------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~  321 (329)
T 3fvz_A          287 ---------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT  321 (329)
T ss_dssp             ---------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred             ---------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence                                                   01223357889999999777 888888999999874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=3.1e-13  Score=132.50  Aligned_cols=230  Identities=10%  Similarity=0.071  Sum_probs=165.4

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE
Q 007234           15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (612)
Q Consensus        15 pdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs   93 (612)
                      ..+++|++++.++.|.+||.++|+.+.++..+. ..+.+..+.++                           +++++  +
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---------------------------G~ilv--s   53 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---------------------------GEILF--S   53 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---------------------------SCEEE--E
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---------------------------CCEEE--e
Confidence            346789999999999999999999999987543 12222222222                           66666  5


Q ss_pred             CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEecCC------CCeeEEE
Q 007234           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAST------KGISCMA  166 (612)
Q Consensus        94 ~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~  166 (612)
                      .++.|..||. +|+.++++..++...+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+....      .....++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            5778999999 899998886544457899999999999999887 788888885 788877765321      2445678


Q ss_pred             ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec
Q 007234          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (612)
Q Consensus       167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (612)
                      +.++|+++++..  +.|..||.+ |+.+.++..+ ..+.++.+.++|..+++++ .++.|..+|..+++..     ..+.
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~-----w~~~  203 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV-----RRVN  203 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE-----EEEE
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE-----EEec
Confidence            899999999887  899999998 9999988765 3455677889999888775 5778999999988754     2222


Q ss_pred             C------CceeEEeEEecCCccCCCCcEEEEEecC--------CcEEEEEC-CCcceec
Q 007234          245 H------PAVFMDCRCIDNGGVDDAGLYVLAISET--------GVCYIWYG-QNIEELR  288 (612)
Q Consensus       245 ~------~~~~~~~~~~~~~~~~~~~~~l~t~s~d--------g~i~iwd~-~~~~~~~  288 (612)
                      .      .-..+......     ++|..+++....        +..+++++ .+++.+.
T Consensus       204 ~~~~~~~~l~~~~~~~~~-----~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W  257 (276)
T 3no2_A          204 ANDIEGVQLFFVAQLFPL-----QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW  257 (276)
T ss_dssp             GGGSBSCCCSEEEEEEEC-----TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred             CCCCCCccccccccceEc-----CCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence            1      11224455554     788888776421        23345555 4555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=5.8e-13  Score=149.07  Aligned_cols=236  Identities=12%  Similarity=0.076  Sum_probs=158.8

Q ss_pred             EEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|||||++||.++.++     +|++||+.+|+.......+ ..                  ...+.|.+.        
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~------------------~~~~~wspD--------  181 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VK------------------FSCMAWTHD--------  181 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-EC------------------SCCEEECTT--------
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cc------------------cceEEEEeC--------
Confidence            459999999999876533     8999999999876532211 11                  223455443        


Q ss_pred             CCcEEEEEECCCc----------------EEEEEcCCCeEE--EEe-ccCCCCCeEEEEEecCCCEEEEEec-----CCc
Q 007234           85 GSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DGM  140 (612)
Q Consensus        85 ~~~~l~~gs~~g~----------------I~vwd~~~~~~~--~~~-~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~  140 (612)
                       ++.|+.++.++.                |++|++.+++..  ..+ ...|...+.++.|+|||++|+.++.     +..
T Consensus       182 -g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          182 -GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             -SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             -CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence             677888777655                999999887621  111 1235566889999999999887764     568


Q ss_pred             EEEEECCC------Cc-eeEEEecCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCe--eEEEEecCCC--CEE
Q 007234          141 VCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AVR  203 (612)
Q Consensus       141 v~iwd~~~------~~-~~~~~~~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~--~~~~~~~h~~--~v~  203 (612)
                      |++||+.+      +. ....+..+...+.. .|+|+|+.++..+      +.|.+||+.++.  ....+..|..  .+.
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  339 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE  339 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence            99999976      43 45666666665554 4889998877654      379999998874  2345555544  678


Q ss_pred             EEEEeeCCcEEEEEEcCCCe--EEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-e---cCCcEE
Q 007234          204 FMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCY  277 (612)
Q Consensus       204 ~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s---~dg~i~  277 (612)
                      .+.|++++.++++.. .|+.  |.+|++.+++..     ..+..+...+..+.++     +++..++.. +   ..++|+
T Consensus       340 ~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~  408 (710)
T 2xdw_A          340 WVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGIIY  408 (710)
T ss_dssp             EEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEEE
T ss_pred             EEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEEE
Confidence            899987777666665 6774  556676555422     2233334445555665     777665543 2   257899


Q ss_pred             EEECCCcc
Q 007234          278 IWYGQNIE  285 (612)
Q Consensus       278 iwd~~~~~  285 (612)
                      .||+.+++
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=4.7e-13  Score=130.56  Aligned_cols=237  Identities=8%  Similarity=-0.047  Sum_probs=155.5

Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +++++|+|++++ +.+.++.|.+||..++...........                  ....+.+.+.         +.+
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------~p~~i~~~~~---------g~l   80 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY------------------QPQGLAVDGA---------GTV   80 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC------------------SCCCEEECTT---------CCE
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC------------------CcceeEECCC---------CCE
Confidence            459999999777 446788999999765543221111111                  1223333322         554


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                       +++..++.|.+||...+... .+.......+.+++++++|+.+++...++.|.+||..+.............+.+++++
T Consensus        81 -~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~  158 (270)
T 1rwi_B           81 -YVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  158 (270)
T ss_dssp             -EEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC
T ss_pred             -EEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe
Confidence             44444888999998876543 3322333678999999999877777778899999865554332222233467899999


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      |+|+++++..  +.|.+||..+.........+...+.++++.++|..+++.. .++.|.+|+.......     ......
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~-----~~~~~~  232 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST-----VLPFTG  232 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE-----ECCCCS
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce-----eeccCC
Confidence            9999777665  7999999887765443333446788999999997666553 6788999998765322     111111


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      ......+++.     ++|+.+++...++.|++|+....+.
T Consensus       233 ~~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          233 LNTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CSCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence            1334566676     8899888888899999999876554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=6.6e-13  Score=131.69  Aligned_cols=231  Identities=12%  Similarity=0.076  Sum_probs=153.6

Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +++|+|+|+ +++++..++.|..||..++  ...+..+...+.                  ++.+.+.         +.+
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------~l~~~~d---------g~l   82 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQN------------------GHCLNKQ---------GHL   82 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEE------------------EEEECTT---------CCE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcc------------------eeeECCC---------CcE
Confidence            459999998 7778888999999999887  555544333333                  3333322         666


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEE----e-------------cCCcEEEEECCC
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSA----G-------------ADGMVCEIDPLT  148 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~----s-------------~dg~v~iwd~~~  148 (612)
                      +++...++.|.+||..+++.......   .....+.+++++|+|+++++.    +             ..+.|..+|.. 
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence            66655668899999988876432211   112356789999999988773    2             13466666655 


Q ss_pred             CceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC-CCee---EEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (612)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-~~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~  222 (612)
                      ++ +..+..+......++|+|+|+.+++..  +.|++||+. +++.   ...+..+...+.+++++++|+++++.   ++
T Consensus       162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~  237 (296)
T 3e5z_A          162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD  237 (296)
T ss_dssp             SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred             CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence            44 344455566789999999999986655  799999997 4544   33343355567789999999866554   67


Q ss_pred             eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      .|.+|+.. ++..     ..+..+.. +..++|.    .++++.|++++.+ .+.-++.++.+.
T Consensus       238 ~v~~~~~~-g~~~-----~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          238 GVHVLTPD-GDEL-----GRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEECTT-SCEE-----EEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             eEEEECCC-CCEE-----EEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence            89999986 3322     22333333 4555663    2888888888876 455556655544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=2.7e-13  Score=140.05  Aligned_cols=242  Identities=11%  Similarity=0.066  Sum_probs=150.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccc---ccccccccccccccceeE------EEeeecccccc
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT---SLYGNRLEREHLSVDYTC------MKWLSVDRKKK   81 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~------~~w~~~~~~~~   81 (612)
                      +.|||||++|+.++.++.|.+||+.+++....+..+......   ++|...        ....      ..|.+.     
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--------~~~~~~~~~~~~~spd-----  152 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--------TKLVGIEILKRDWQPL-----  152 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--------SEEEEEEEEGGGCCCC-----
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--------CccccccccccccCCC-----
Confidence            489999999999999999999999998876655433221100   111100        0000      011111     


Q ss_pred             cccCCcEEEEE-----ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecC------CcEEEEECCCC
Q 007234           82 RKLGSSLLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTG  149 (612)
Q Consensus        82 ~~~~~~~l~~g-----s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~d------g~v~iwd~~~~  149 (612)
                          ++.++.+     ..+..|.+||+.+++.....  .+...+..+.|+| +++.|+.++.+      ..|.+||+..+
T Consensus       153 ----g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          153 ----TSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             ----CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             ----CcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence                3333333     34556999999988765433  3667899999999 78877766543      46889998765


Q ss_pred             ceeEEEecC--CCCeeEEEECCCCCEEEEeC-----Ce--EEEEEcCCCeeEEEEecCCCCEEEEEEee-CCcEEEEEEc
Q 007234          150 SLLGKFRAS--TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV  219 (612)
Q Consensus       150 ~~~~~~~~~--~~~v~~l~~spdg~~l~~~~-----g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~  219 (612)
                      +.. .+..+  ...+..++|+|||+.|+.++     ..  |++||+.+++...... ... .. +.|+| +|+++++++.
T Consensus       227 ~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          227 NVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             CCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEEC
T ss_pred             cee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecC
Confidence            533 33222  22578899999999877664     24  9999999886543322 222 33 89999 9998877541


Q ss_pred             ---------------CCCeEEEEEcCCCccccceeeEeecCCce----------eEEeEEecCCccCCCCcEEEEEec-C
Q 007234          220 ---------------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-T  273 (612)
Q Consensus       220 ---------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~t~s~-d  273 (612)
                                     .+..|.+||+.+++..   .+.  .+...          ......|+     |+|+.|+.++. +
T Consensus       303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~--~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~  372 (396)
T 3c5m_A          303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLC--KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFE  372 (396)
T ss_dssp             CC----------CCCCCCEEEEEETTTTBCC---EEE--ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTT
T ss_pred             CcceeeccccccccCCCCcEEEEecccCceE---Ecc--CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCC
Confidence                           2478999999877643   111  12211          12234565     99998887765 5


Q ss_pred             CcEEEE--ECCCcc
Q 007234          274 GVCYIW--YGQNIE  285 (612)
Q Consensus       274 g~i~iw--d~~~~~  285 (612)
                      +...+|  ++.+++
T Consensus       373 ~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          373 GVPAIYIADVPESY  386 (396)
T ss_dssp             SSCEEEEEECCTTC
T ss_pred             CCceEEEEEEcccc
Confidence            555555  444443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=1.4e-12  Score=131.58  Aligned_cols=234  Identities=9%  Similarity=0.040  Sum_probs=162.0

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      +++ +++.+++...++.|.+||..+++.+.++... ..                  ...+.+.+.         + .+++
T Consensus        50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~------------------p~~i~~~~~---------g-~lyv   99 (328)
T 3dsm_A           50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TS------------------PRYIHFLSD---------E-KAYV   99 (328)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SS------------------EEEEEEEET---------T-EEEE
T ss_pred             EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CC------------------CcEEEEeCC---------C-eEEE
Confidence            553 3445555566899999999999998887421 11                  223333221         4 4555


Q ss_pred             EE-CCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        92 gs-~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      +. .++.|.+||+.+++....+..+.    ......+++  ++..++.++  .++.|.+||..+++.+..+... .....
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~  176 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS  176 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence            55 78999999999999876664322    115567777  345566555  4889999999999988888753 34578


Q ss_pred             EEECCCCCEEEEeCC------------eEEEEEcCCCeeEEEEecC-CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       165 l~~spdg~~l~~~~g------------~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ++++|+|++++++.+            .|.++|..+++....+.-. ......++|+|+++.++++. .  .|.+||..+
T Consensus       177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d~~t  253 (328)
T 3dsm_A          177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMPVEA  253 (328)
T ss_dssp             CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEETTC
T ss_pred             eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEECCC
Confidence            999999998777653            6999999999988777532 23578999999999888764 2  899999988


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEE----ecCCcEEEEECCCcceeccc
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAI----SETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~----s~dg~i~iwd~~~~~~~~~~  290 (612)
                      ++.... .  ...........++++     | ++...++.    ..++.|.+||.. ++.+..+
T Consensus       254 ~~~~~~-~--~~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          254 DRVPVR-P--FLEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             SSCCSS-C--SBCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             Cceeee-e--eecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            764310 1  111112344566676     7 55555655    568899999988 8776544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=1.7e-12  Score=131.57  Aligned_cols=213  Identities=10%  Similarity=0.077  Sum_probs=139.1

Q ss_pred             EEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234           12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        12 ~fspdg~~las~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ++  ||+++|...         .++.|.+||+.+++... +    ..+....|+++                        
T Consensus        21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpD------------------------   69 (347)
T 2gop_A           21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPD------------------------   69 (347)
T ss_dssp             EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTT------------------------
T ss_pred             eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCC------------------------
Confidence            66  999888653         25679999999887543 2    22333344443                        


Q ss_pred             ccCCcEEEEEECC---Cc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-------------------
Q 007234           83 KLGSSLLVLGTGG---GD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------------------  138 (612)
Q Consensus        83 ~~~~~~l~~gs~~---g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-------------------  138 (612)
                         ++.|+.++.+   +.  |.+|++.+++..... . +.. +.+++|+|||+.|+.++.+                   
T Consensus        70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             ---CCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence               6677766653   33  888899888765433 2 223 9999999999998887643                   


Q ss_pred             --------CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-C--------eEEEEEcCCCeeEEEEecCCCC
Q 007234          139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA  201 (612)
Q Consensus       139 --------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g--------~i~lwd~~~~~~~~~~~~h~~~  201 (612)
                              ..|++||+.+++.+..+.. . .+..+.|+||| +++++. .        ...+|.+.+++. ..+..+ ..
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~  218 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS  218 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred             cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence                    5799999998887455554 3 78899999999 777663 1        234444335554 444444 55


Q ss_pred             EEEEEEeeCCcEEEEEEcCC-------CeEEEEEcCCCccccceeeEeecCCceeEEe-EEecCCccCCCCcEEEEEecC
Q 007234          202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISET  273 (612)
Q Consensus       202 v~~l~~sp~~~~l~s~s~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~t~s~d  273 (612)
                      +..+  +|+|++++.++..+       ..|.+||  +++..     .........+.. ..|     + ++ ++++++.+
T Consensus       219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-----~l~~~~~~~~~~~~~~-----s-dg-~~~~~~~~  282 (347)
T 2gop_A          219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-----GILDEVDRGVGQAKIK-----D-GK-VYFTLFEE  282 (347)
T ss_dssp             EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-----ESSTTCCSEEEEEEEE-----T-TE-EEEEEEET
T ss_pred             eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-----eccccCCcccCCccEE-----c-Cc-EEEEEecC
Confidence            5554  99999888776322       3677777  33321     122232333332 555     3 66 88888999


Q ss_pred             CcEEEEECCC
Q 007234          274 GVCYIWYGQN  283 (612)
Q Consensus       274 g~i~iwd~~~  283 (612)
                      |.+++| +.+
T Consensus       283 ~~~~l~-~~~  291 (347)
T 2gop_A          283 GSVNLY-IWD  291 (347)
T ss_dssp             TEEEEE-EES
T ss_pred             CcEEEE-EcC
Confidence            999999 763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.55  E-value=3.2e-12  Score=125.88  Aligned_cols=181  Identities=13%  Similarity=0.207  Sum_probs=130.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEecc-----CCCCCeEEEEEe-cCCCEEEEEec-CCcEEEEECCCCceeEEEecC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFA-THGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~s-p~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      +.++++...++.|.+||.. ++.+..+..     +|...+.++++. +++..+++... ++.|++|| .+++.+..+...
T Consensus        41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~  118 (286)
T 1q7f_A           41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT  118 (286)
T ss_dssp             CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT
T ss_pred             CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc
Confidence            6677777888999999987 555545431     344678999995 66665555533 89999999 677777776533


Q ss_pred             -CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          159 -TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       159 -~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                       ...+.+++++|+|+++++..  +.|++||.. ++.+..+.  ++...+..++++|+|+.+++.. .++.|.+|+.....
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~  196 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAHCVKVFNYEGQY  196 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGTEEEEEETTCCE
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CCCEEEEEcCCCCE
Confidence             34789999999999888765  799999964 55666664  4456789999999998666554 68899999975432


Q ss_pred             cccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCC-cEEEEEC
Q 007234          234 KQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG  281 (612)
Q Consensus       234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg-~i~iwd~  281 (612)
                            +..+...  ......++++     ++|+++++...++ .|.+|+.
T Consensus       197 ------~~~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          197 ------LRQIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             ------EEEESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECT
T ss_pred             ------EEEEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECC
Confidence                  1222222  2345667776     8998888887776 9999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=6.6e-12  Score=126.56  Aligned_cols=224  Identities=13%  Similarity=0.108  Sum_probs=147.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++|+|+|++++++..++.|.+||..+++.......+...                  ..++.|.+.         +.++
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------------------~~~i~~~~d---------g~l~  101 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN------------------PAAIKIHKD---------GRLF  101 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSS------------------EEEEEECTT---------SCEE
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCC------------------cceEEECCC---------CcEE
Confidence            4499999998888888999999999988866544222222                  334444332         5666


Q ss_pred             EEEECC----CcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecC
Q 007234           90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        90 ~~gs~~----g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      ++...+    +.|.+||..++.....+. ..+...+.+++++|+|+.+++...      .+.|..+|..+++.... ...
T Consensus       102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~  180 (333)
T 2dg1_A          102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQN  180 (333)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEE
T ss_pred             EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecC
Confidence            665555    579999998887643322 234567999999999987776653      35677777665554333 223


Q ss_pred             CCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-CeeEEE--------EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~~~~--------~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      ...+..++|+|+|+.++.+.   +.|++||+.+ +..+..        +.++ ..+..++++++|+++++.. .++.|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence            34578999999998665543   7999999964 332221        1222 4678899999999777665 5789999


Q ss_pred             EEcCCCccccceeeEeecCCce------eEEeEEecCCccCCCCcEEEEEecCC
Q 007234          227 WRTDGVKKQSASCVLAMEHPAV------FMDCRCIDNGGVDDAGLYVLAISETG  274 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~t~s~dg  274 (612)
                      ||.. ++..     ..+..+..      .+..++|+     +++..|+.++.++
T Consensus       259 ~d~~-g~~~-----~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g  301 (333)
T 2dg1_A          259 FNKR-GYPI-----GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI  301 (333)
T ss_dssp             ECTT-SCEE-----EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred             ECCC-CCEE-----EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence            9984 3322     22222221      34556676     8887777666554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.54  E-value=3.4e-13  Score=149.73  Aligned_cols=238  Identities=11%  Similarity=0.028  Sum_probs=149.7

Q ss_pred             EEc--CCCCE-EEEEeC-CCcEEEEECC--C-CcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        12 ~fs--pdg~~-las~s~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +|+  |||++ ||.++. +..|.+|++.  + +. ...+.....             .........+.|.+.        
T Consensus        83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD--------  140 (662)
T 3azo_A           83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE--------  140 (662)
T ss_dssp             EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred             eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence            455  99998 887664 5667777775  3 43 333432100             000112334555544        


Q ss_pred             CCcEEEEEECC----------CcEEEEEcCC------CeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--------c
Q 007234           85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------M  140 (612)
Q Consensus        85 ~~~~l~~gs~~----------g~I~vwd~~~------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--------~  140 (612)
                       ++.|+.++.+          ..|++||+.+      ++.. .+...+...+..++|+|||++|+.++.++        .
T Consensus       141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence             7778877766          4699999988      5543 44314557788999999999998887553        7


Q ss_pred             EEEEECC-CC---ceeEEEecCCCCeeEEEECCCCCEEEEeC--C--eEEEEEcCCCeeEEEEecCCCC--------EEE
Q 007234          141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF  204 (612)
Q Consensus       141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g--~i~lwd~~~~~~~~~~~~h~~~--------v~~  204 (612)
                      |++||+. ++   +.......+...+..+.|+|||+++++++  +  .|++||+.+++......++...        +..
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            9999998 56   44444444567899999999999777776  4  7888888777654433333322        567


Q ss_pred             EEEeeCCcEEEEEEcCCCeEEEE--EcCCCccccceeeEeecCCceeEEeE-EecCCccCCCCcEEEEEecCC--cEEEE
Q 007234          205 MTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCR-CIDNGGVDDAGLYVLAISETG--VCYIW  279 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~t~s~dg--~i~iw  279 (612)
                      ++|+|++++++++. . +.+++|  |+.+++.      ..+..+...+..+ .++     .+...+++++.+.  .|.+|
T Consensus       299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          299 FAPLANGLIAVVHG-K-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVS-----GTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             EEECTTSCEEEEEB-S-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEE
T ss_pred             EeEeCCCEEEEEEE-c-CccEEEEEECCCCcE------EEecCCCCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEE
Confidence            89999999888876 6 888899  4444432      2233333333333 332     3333344445554  45556


Q ss_pred             ECCCcce
Q 007234          280 YGQNIEE  286 (612)
Q Consensus       280 d~~~~~~  286 (612)
                      |+.+++.
T Consensus       366 d~~~g~~  372 (662)
T 3azo_A          366 DTVTGRA  372 (662)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCce
Confidence            6666654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=8.7e-13  Score=133.77  Aligned_cols=217  Identities=10%  Similarity=0.024  Sum_probs=140.7

Q ss_pred             EEEEcCCCCEEEEEeCC---C--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|||||++||.++.+   +  .|.+||+.+++.........                    ...+.|.+.        
T Consensus        63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------------~~~~~wspd--------  114 (347)
T 2gop_A           63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--------------------IRSLEWNED--------  114 (347)
T ss_dssp             EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--------------------EEEEEECTT--------
T ss_pred             CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--------------------ccceeECCC--------
Confidence            35999999999987753   3  48888998887665443211                    334445433        


Q ss_pred             CCcEEEEEEC---------------------------CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec
Q 007234           85 GSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA  137 (612)
Q Consensus        85 ~~~~l~~gs~---------------------------~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~  137 (612)
                       ++.|+.++.                           ...|.+||+.+++.+..+..  . .+..+.|+|+| .+++++.
T Consensus       115 -g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          115 -SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             -SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEEC
T ss_pred             -CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEec
Confidence             555666553                           24599999999887444433  3 78899999999 8777765


Q ss_pred             CC-------cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----------CeEEEEEcCCCeeEEEEecCCC
Q 007234          138 DG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPG  200 (612)
Q Consensus       138 dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~  200 (612)
                      ++       ...+|.+.+++. ..+..+ ..+.++  +|||+.|+.++          ..|++||  +++......+|..
T Consensus       190 ~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~  263 (347)
T 2gop_A          190 REIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR  263 (347)
T ss_dssp             CCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred             ccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence            42       334443335544 334334 445444  99999887654          2688888  5655444456677


Q ss_pred             CEEE-EEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcE-EE
Q 007234          201 AVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-YI  278 (612)
Q Consensus       201 ~v~~-l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i-~i  278 (612)
                      .+.. +.|+ ++ .+++++ .++.+++| +.+++.     .....+ ...+..+.++     +  .++++++.++.. .+
T Consensus       264 ~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~l  326 (347)
T 2gop_A          264 GVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLREL  326 (347)
T ss_dssp             EEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCEE
T ss_pred             ccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHHh
Confidence            8886 8999 88 777766 68999999 874432     122233 4445566676     6  677777777654 77


Q ss_pred             EECC
Q 007234          279 WYGQ  282 (612)
Q Consensus       279 wd~~  282 (612)
                      |.+.
T Consensus       327 ~~~~  330 (347)
T 2gop_A          327 FTWD  330 (347)
T ss_dssp             EEES
T ss_pred             eEeC
Confidence            7665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=3.7e-12  Score=142.52  Aligned_cols=202  Identities=8%  Similarity=-0.019  Sum_probs=138.1

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECC-C----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc--
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--  140 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~-g----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~--  140 (612)
                      .....|.+.         +++|+.+... |    .|++||+.+++....... + ..+.+++|+|||+.|+.++.++.  
T Consensus       127 ~~~~~~SPD---------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          127 LRGYAFSED---------GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             EEEEEECTT---------SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             EEEEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccc
Confidence            445566644         6777766553 3    799999999988754322 2 23678999999999999888766  


Q ss_pred             --------------EEEEECCCCcee--EEEec--CCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCC------C
Q 007234          141 --------------VCEIDPLTGSLL--GKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------H  189 (612)
Q Consensus       141 --------------v~iwd~~~~~~~--~~~~~--~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~------~  189 (612)
                                    |++|++.+++..  ..+..  +...+..+.|+|||++|+.++       ..|++||+.+      +
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999887632  23333  344578999999999988754       3799999986      4


Q ss_pred             e-eEEEEecCCCCEEEEEEeeCCcEEEEEEcCC---CeEEEEEcCCCccccceeeEeecCCc-eeEEeEEecCCccCCCC
Q 007234          190 K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAG  264 (612)
Q Consensus       190 ~-~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  264 (612)
                      . ....+..+...+.. .|+|+|..|+..+..+   ..|.+||+.++.....  .....+.. ..+..+.+.     +++
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~~~~~-----~~~  347 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW--KVLVPEHEKDVLEWVACV-----RSN  347 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC--EEEECCCSSCEEEEEEEE-----TTT
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc--eeccCCCCCCeEEEEEEE-----cCC
Confidence            3 45667777766655 5889998887766333   3699999987642111  11223333 355556665     677


Q ss_pred             cEEEEEecCCc--EEEEECCCcceec
Q 007234          265 LYVLAISETGV--CYIWYGQNIEELR  288 (612)
Q Consensus       265 ~~l~t~s~dg~--i~iwd~~~~~~~~  288 (612)
                      .++++...+|.  |.+|++.+++.++
T Consensus       348 ~lv~~~~~~g~~~l~~~~~~~g~~~~  373 (710)
T 2xdw_A          348 FLVLCYLHDVKNTLQLHDLATGALLK  373 (710)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             EEEEEEEECCEEEEEEEECCCCCEEE
Confidence            88888888884  5667776665443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=1.2e-11  Score=122.64  Aligned_cols=190  Identities=8%  Similarity=-0.023  Sum_probs=133.0

Q ss_pred             eeEEEeeecccccccccCCc-EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234           68 YTCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~-~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                      .....|.+.         ++ +++++..++.|..||..++  ...+ ..+...+.+++++|+|+++++...++.|.+||.
T Consensus        30 ~eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           30 TEGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             ccCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            345667654         44 7888888999999999988  3344 346678999999999998777767789999999


Q ss_pred             CCCceeEEEecC----CCCeeEEEECCCCCEEEEeC-------------------CeEEEEEcCCCeeEEEEecCCCCEE
Q 007234          147 LTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVR  203 (612)
Q Consensus       147 ~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~  203 (612)
                      .+++........    ...+..++++|+|+++++..                   +.|+.++.. ++ +..+..+.....
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            888764443221    23567899999999888621                   356666655 44 445556777789


Q ss_pred             EEEEeeCCcEEEEEEcCCCeEEEEEcC-CCcc-ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          204 FMTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       204 ~l~~sp~~~~l~s~s~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .++|+|+|+.+++ ...++.|.+|++. .+.. . ....+  .........++++     ++|++.++.  ++.|.+|+.
T Consensus       176 gi~~s~dg~~lv~-~~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          176 GLAFLPSGNLLVS-DTGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             EEEECTTSCEEEE-ETTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECT
T ss_pred             cEEECCCCCEEEE-eCCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECC
Confidence            9999999998844 4468899999997 3432 1 11122  2222333456666     888866655  788999986


Q ss_pred             C
Q 007234          282 Q  282 (612)
Q Consensus       282 ~  282 (612)
                      .
T Consensus       245 ~  245 (296)
T 3e5z_A          245 D  245 (296)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=1.3e-10  Score=114.67  Aligned_cols=234  Identities=9%  Similarity=-0.006  Sum_probs=155.5

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++.+  +++|+|+++++...++.|.+||.. ++... +.....                ......+.+.+.        
T Consensus        16 ~~~~i--~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~----------------~~~~~~i~~~~~--------   67 (299)
T 2z2n_A           16 GPYGI--TVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTP----------------DAKVMCLTISSD--------   67 (299)
T ss_dssp             CEEEE--EECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSST----------------TCCEEEEEECTT--------
T ss_pred             Cccce--EECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcc----------------cCceeeEEECCC--------
Confidence            45444  999999988776668899999988 65433 221100                112223333321        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCee
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGIS  163 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~  163 (612)
                       +.+.++...++.|..||.. ++............+.++++.++|..+++...++.|..||. +++.... .......+.
T Consensus        68 -g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~  144 (299)
T 2z2n_A           68 -GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS  144 (299)
T ss_dssp             -SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             -CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence             5555655557889999987 44322212234567899999999987777777889999998 5554332 222345789


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      +++++++|++.++..  +.|..||. +++.... +..+...+.++++.++|..+++.. .++.|.+|+. ++...    .
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~  217 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----E  217 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----E
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----E
Confidence            999999998888775  79999998 6655432 333455688999999998666543 5788999998 55422    1


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .........+..+.+.     ++|+..++...++.|..||.
T Consensus       218 ~~~~~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          218 FKIPTPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EECSSTTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred             EECCCCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence            2222233345566676     88886666657789999987

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=3.4e-11  Score=129.69  Aligned_cols=193  Identities=14%  Similarity=0.115  Sum_probs=149.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC--CCceeEEEecCCCCee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~  163 (612)
                      +.++++...++.|.++|..+++.+.++..  ...+.++.|+|||+++++++.|+.|.+||+.  +++.+.++.... ...
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~  243 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR  243 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence            44566667788899999999999887753  3467899999999999999999999999996  888888887533 468


Q ss_pred             EEEEC----CCCCEEEEeC---CeEEEEEcCCCeeEEEEec----------CCC-CEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       164 ~l~~s----pdg~~l~~~~---g~i~lwd~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      .++|+    |||+++++++   +++.++|..+.+.+..+..          |.. .+..+.+++++..++..-..+|.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            99999    6999999887   8999999999998887752          222 6788999998776666655789999


Q ss_pred             EEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceeccc
Q 007234          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~  290 (612)
                      ++|....+..   .+..+.. ........|+     |+|+++++++ .++.|.++|..+++.+...
T Consensus       324 ~vd~~~~~~~---~v~~i~~-~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          324 LVDYTDLNNL---KTTEISA-ERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             EEETTCSSEE---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEecCCCccc---eeeeeec-cccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            9998775422   1222222 2334455676     9999987776 5789999999999876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=2.8e-12  Score=143.10  Aligned_cols=235  Identities=9%  Similarity=0.007  Sum_probs=150.1

Q ss_pred             EEEEcCCCCEEEEE-----eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAIC-----SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|||||++||.+     +.+.+|++||+.+|+.+.  ..+...+                ....+.|.+.        
T Consensus       125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~----------------~~~~~~wspD--------  178 (695)
T 2bkl_A          125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGG----------------KYATPKWTPD--------  178 (695)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCC----------------TTCCCEECTT--------
T ss_pred             EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcc----------------cccceEEecC--------
Confidence            45999999999944     334689999999988641  1111111                0123445443        


Q ss_pred             CCcEEEEEECCCc-------------EEEEEcCCCe----EEEEeccCCCCCeEEEEEecCCCEEEEEecCC----cEEE
Q 007234           85 GSSLLVLGTGGGD-------------VLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCE  143 (612)
Q Consensus        85 ~~~~l~~gs~~g~-------------I~vwd~~~~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg----~v~i  143 (612)
                       ++.|+.++.+..             |++|++.++.    .+.. ...|...+.++.|+|||++|+.++.++    .|++
T Consensus       179 -g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          179 -SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             -SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             -CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence             677888887665             9999999876    2222 234556889999999999988877666    6777


Q ss_pred             EECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCee--EEEE-ecC-CCCEEEEEEeeCCcEE
Q 007234          144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKF-SGH-PGAVRFMTFSDNGKYV  214 (612)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~--~~~~-~~h-~~~v~~l~~sp~~~~l  214 (612)
                      ||..+++ ...+..+...+....+ ++|.+++.+.     +.|++||+.+++.  ...+ ..+ ...+..++|+ ++..+
T Consensus       257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv  333 (695)
T 2bkl_A          257 KRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS  333 (695)
T ss_dssp             ECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred             EcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence            8765554 3444445555566666 5666544443     5899999987753  2333 333 4457888888 56666


Q ss_pred             EEEEcCCCeEEEEEcCC-CccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEEe----cCCcEEEEECCCcce
Q 007234          215 LSSAVGERYIALWRTDG-VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS----ETGVCYIWYGQNIEE  286 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~s----~dg~i~iwd~~~~~~  286 (612)
                      ++.. .|+..++|.+.. ++.     ...+..+ ...+..+.++     +++..++...    ..++|++||+.+++.
T Consensus       334 ~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          334 LEYL-KDATSEVRVATLKGKP-----VRTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEE-ETTEEEEEEEETTCCE-----EEECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEE-ECCEEEEEEEeCCCCe-----eEEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            6665 788888887652 321     1222222 3333444454     7887666432    357899999988753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=4.2e-12  Score=141.68  Aligned_cols=237  Identities=10%  Similarity=0.001  Sum_probs=146.2

Q ss_pred             EcCCCCEEEEEeCCC---cEEEE--ECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        13 fspdg~~las~s~dg---~i~iw--d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .+|+|++++....++   .-.+|  +...+.....+....           +..+| ........|.|.         ++
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~-----------~a~~~-~~~~~~~~~SPD---------G~  133 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG-----------WSKDG-TVSLGTWAVSWD---------GK  133 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG-----------SSSSS-CEEEEEEEECTT---------SS
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH-----------hccCC-CEEEEEEEECCC---------CC
Confidence            458999988776543   33444  444454332222100           01122 123445556543         66


Q ss_pred             EEEEEEC-C----CcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEecCCc-------------EEEEECCC
Q 007234           88 LLVLGTG-G----GDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPLT  148 (612)
Q Consensus        88 ~l~~gs~-~----g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-------------v~iwd~~~  148 (612)
                      +|+.+.. +    ..|++||+.+++.+ ......  ....+++|+|||+.|+.++.|..             |++|++.+
T Consensus       134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t  211 (695)
T 2bkl_A          134 KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT  211 (695)
T ss_dssp             EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred             EEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence            6664332 3    46999999999864 211111  11268999999999999988776             99999988


Q ss_pred             Cce--eEEE--ecCCCCeeEEEECCCCCEEEEeC--C----eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234          149 GSL--LGKF--RASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       149 ~~~--~~~~--~~~~~~v~~l~~spdg~~l~~~~--g----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ++.  ...+  ..+...+.++.|+|||++|+.++  +    .|++||..+++ ...+..+...+....+ ++|. ++..+
T Consensus       212 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s  288 (695)
T 2bkl_A          212 EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLT  288 (695)
T ss_dssp             CGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred             CchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEE
Confidence            762  2223  33445788999999999988765  4    78888766554 4455556666666666 6777 55554


Q ss_pred             cC---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          219 VG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       219 ~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      ..   ++.|.+||+.++.......+ ...++...+..+.+.      ++.++++...|+..++|...
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          289 DEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence            32   47899999977653111111 112224445555553      56788888999988887654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.46  E-value=3e-11  Score=120.47  Aligned_cols=237  Identities=14%  Similarity=0.114  Sum_probs=153.9

Q ss_pred             EEEEcCCCCEEEE-------EeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234           10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        10 ~~~fspdg~~las-------~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +++|+++|+++++       +..++.|.+||..+++........             ..++ ......+.+.+.      
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------~~~~-~~~~~~i~~~~~------   81 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE-------------VNGY-GGIPAGCQCDRD------   81 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE-------------ETTE-ECCEEEEEECSS------
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc-------------cCCC-CCCCceEEEecC------
Confidence            4499999988877       566889999998888764322100             0001 112334444432      


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccC----CCCCeEEEEEecCCCEEEEEecC---------------CcEEE
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD---------------GMVCE  143 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s~d---------------g~v~i  143 (612)
                         +..+.+++..+.|.+||.. ++........    ....+.+++++++|+.+++...+               +.|..
T Consensus        82 ---~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           82 ---ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             ---SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             ---CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence               1456666666679999998 7654220211    12358899999999877776655               57888


Q ss_pred             EECCCCceeEEEecCCCCeeEEEEC----CCCCEEEEe-C--CeEEEEEcC-CCe-----eEEEEecCC-CCEEEEEEee
Q 007234          144 IDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFSD  209 (612)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~s----pdg~~l~~~-~--g~i~lwd~~-~~~-----~~~~~~~h~-~~v~~l~~sp  209 (612)
                      ||.. ++...... +......++++    |+|+.++++ .  +.|++||.+ +++     ....+.++. ..+..+++++
T Consensus       158 ~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          158 FTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             ECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            8865 55433332 33456889999    999766554 3  799999986 454     233344444 5678899999


Q ss_pred             CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN  283 (612)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~  283 (612)
                      +|+++++.. .++.|.+||..+++..     .....+...+..++++     ++|+.|+++ ..++.|..|+...
T Consensus       236 ~G~l~v~~~-~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 DNNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEc-CCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence            998777765 5789999998866533     1222333445666676     899855555 4568999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=9.7e-11  Score=117.93  Aligned_cols=223  Identities=10%  Similarity=0.033  Sum_probs=152.7

Q ss_pred             CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcC
Q 007234           25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS  104 (612)
Q Consensus        25 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~  104 (612)
                      .++.|.+||..+++....+.....            ...+......+...  +        +.+.++...++.|.+||..
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n------------~~~lg~~~~~i~~~--~--------~~lyv~~~~~~~v~viD~~   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRAN------------GFKLGDVAQSMVIR--D--------GIGWIVVNNSHVIFAIDIN   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHH------------SSCCBSCEEEEEEE--T--------TEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEECCCCEEhhhhHhhhc------------CcccCccceEEEEE--C--------CEEEEEEcCCCEEEEEECc
Confidence            378999999999987654411000            00111122233321  1        4455666667889999999


Q ss_pred             CCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEEEecCC-----CCeeEEEECCCCCEEEEe-
Q 007234          105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA-  177 (612)
Q Consensus       105 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~spdg~~l~~~-  177 (612)
                      +++.+.++.  .......++++++++ ++.+. .++.|.+||..+++....+....     .....+++ .+++++++. 
T Consensus        73 t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           73 TFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             TCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             ccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence            999987773  446789999999984 55555 89999999999999887776543     14567777 455555553 


Q ss_pred             --CCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC----------CeEEEEEcCCCccccceeeEeecC
Q 007234          178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       178 --~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                        ++.|.++|..+++.+..+.... ....+.++|+|++++++. .+          +.|.+||..+++..   .......
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~  223 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL  223 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred             CCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence              2789999999999888886533 346789999998766654 34          78999999887633   1122211


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                       ......++++     |++++++++..  .|.+||..+++.
T Consensus       224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred             -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence             1234566776     88898888765  899999877764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.43  E-value=9.9e-12  Score=121.75  Aligned_cols=189  Identities=12%  Similarity=0.125  Sum_probs=146.0

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCeeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC  164 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~  164 (612)
                      +++|++++.++.|.+||.++|+.++++.......+.++.++|+|+.++  +.++.|..||. +|+.+..+..+. ..+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            788999999999999999999999998543225789999999999888  45788999998 899999988753 47889


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec------CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +.+.|+|+++++.+   +.+..+|. +++.+.++..      +......+.+.++|+++++.. .++.|.+||.. ++..
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence            99999999999875   36666665 6777776642      222345567889999988875 79999999988 6643


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                           .....+..... ....     ++|+.+++++.++.|..||..+|+.+....
T Consensus       159 -----w~~~~~~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          159 -----NSVKLSGTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             -----EEEECSSCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             -----EEEECCCCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence                 33333222222 3344     889999998888899999999999876543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=2.2e-10  Score=113.56  Aligned_cols=200  Identities=17%  Similarity=0.148  Sum_probs=133.6

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                      .....|.+.+        +.++++...++.|..||..++... .+  .....+.+++++++|++++ +. ++.|.+||..
T Consensus        15 ~Egp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~   81 (297)
T 3g4e_A           15 GESPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWK   81 (297)
T ss_dssp             EEEEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETT
T ss_pred             ccCCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEE-EE-CCeEEEEECC
Confidence            3456776654        567777778889999999988763 22  2456799999999999544 44 5689999998


Q ss_pred             CCceeEEEecC----CCCeeEEEECCCCCEEEEeC-------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC
Q 007234          148 TGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN  210 (612)
Q Consensus       148 ~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~  210 (612)
                      +++........    ...+..++++|+|+++++..             +.|+.+|.. ++. ..+..+....+.++|+|+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCC
Confidence            87654333321    23578899999999777642             244444443 333 223334455688999999


Q ss_pred             CcEEEEEEcCCCeEEEEEcC--CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          211 GKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      ++.++.+...++.|.+|++.  ++..........+.........+++.     ++|++.++...++.|..||..+++.+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            99887766567899999974  44322111222222222345666776     88987777777888999998777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=6.6e-11  Score=132.99  Aligned_cols=235  Identities=11%  Similarity=0.018  Sum_probs=146.8

Q ss_pred             EEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|||||++||.++.+     .+|++||+.+|+.+.... +..                  ....+.|.+.        
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~------------------~~~~~~wspD--------  219 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV------------------KFSGLAWLGN--------  219 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE------------------ESCCCEESTT--------
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc------------------eeccEEEECC--------
Confidence            34999999999987653     359999999998764311 100                  1123445442        


Q ss_pred             CCcEEEEEECCC--------------cEEEEEcCCCeE--EEEe-ccCCCCCeEEEEEecCCCEEEEEecCC-----cEE
Q 007234           85 GSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MVC  142 (612)
Q Consensus        85 ~~~~l~~gs~~g--------------~I~vwd~~~~~~--~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~  142 (612)
                        +.|+.++.++              .|++|++.++..  ...+ ...+...+.++.|+|||++|+..+.++     .|+
T Consensus       220 --~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          220 --DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             --SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             --CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence              2344444433              389999987752  1111 123334689999999999988777544     899


Q ss_pred             EEECCCC--ceeEEEecCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCC--eeEEEEecCCCCEEEEEEeeCCc
Q 007234          143 EIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGK  212 (612)
Q Consensus       143 iwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~  212 (612)
                      +||+.++  +....+..+........ +|+|+.|+..+      +.|++||+.++  +....+..+...+..+.|+ ++.
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~  375 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR  375 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred             EEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence            9999877  32455555555555543 48888887654      46999999884  3444445555556677777 455


Q ss_pred             EEEEEEcCCCeEEEEEcC-CCccccceeeEeecC-CceeEEeEEecCCccCCCCcEEEEE-e---cCCcEEEEECCCcce
Q 007234          213 YVLSSAVGERYIALWRTD-GVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIEE  286 (612)
Q Consensus       213 ~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~-s---~dg~i~iwd~~~~~~  286 (612)
                      .+++.. .|+..++|.++ .+..     ...+.. ....+..+.++     +++..++.. +   ..++|++||+.+++.
T Consensus       376 lv~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          376 LFASYI-HDAKSQVLAFDLDGKP-----AGAVSLPGIGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEE-ETTEEEEEEEETTSCE-----EEECBCSSSCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEE-ECCEEEEEEEeCCCCc-----eeeccCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            555554 68887777655 2321     122222 23344555565     777655533 2   357999999988763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=1.6e-09  Score=110.83  Aligned_cols=186  Identities=8%  Similarity=-0.109  Sum_probs=124.6

Q ss_pred             EEcCCCCEEEEEeC--CC---cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234           12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus        12 ~fspdg~~las~s~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      ..+|+++++.++..  .+   +|.+||..+++.+.++.....+  .+.++++                           +
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD---------------------------g   77 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS---------------------------G   77 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC---------------------------C
Confidence            45688887766653  23   8899999999988877643222  5555555                           7


Q ss_pred             cEEEEEE----------CCCcEEEEEcCCCeEEEEeccC------CCCCeEEEEEecCCCEEEEEec--CCcEEEEECCC
Q 007234           87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT  148 (612)
Q Consensus        87 ~~l~~gs----------~~g~I~vwd~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~  148 (612)
                      +.++++.          .++.|.+||+.+.+.+..+..+      +......+.|+|||++|++++.  ++.|.++| .+
T Consensus        78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence            7777776          3567999999998887665322      0123568999999999998874  57899999 99


Q ss_pred             CceeEE-EecCCCCeeEEEECCCCCEE-EEeC--CeEEEEEcCCCeeEEEEe-----cCCCCE-EEEEEeeCCcEEEEEE
Q 007234          149 GSLLGK-FRASTKGISCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFS-----GHPGAV-RFMTFSDNGKYVLSSA  218 (612)
Q Consensus       149 ~~~~~~-~~~~~~~v~~l~~spdg~~l-~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~v-~~l~~sp~~~~l~s~s  218 (612)
                      ++.+.. +....    ++.+.|+++.. ++.+  |.+.++|. +++......     ....++ ....+.+++..++..+
T Consensus       157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  231 (373)
T 2mad_H          157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV  231 (373)
T ss_pred             CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence            988877 65322    24555665433 2222  89999999 887663322     112222 2346677766555554


Q ss_pred             cCCCeEEEEEcCCCc
Q 007234          219 VGERYIALWRTDGVK  233 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~  233 (612)
                       ..+.+.+.|+....
T Consensus       232 -~~~~v~vid~~~~~  245 (373)
T 2mad_H          232 -YSGKILQADISAAG  245 (373)
T ss_pred             -CCceEEEEeccCCc
Confidence             47889999987653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.36  E-value=9.1e-10  Score=108.51  Aligned_cols=232  Identities=8%  Similarity=0.019  Sum_probs=148.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++++|+|.++++...++.|..||.. ++. ..+....                .......+.+.+.         +.+.
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~----------------~~~~~~~i~~~~~---------g~l~  113 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN----------------PDSAPYGITEGPN---------GDIW  113 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS----------------TTCCEEEEEECTT---------SCEE
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC----------------cCCCceeeEECCC---------CCEE
Confidence            44999999988877778889999986 443 2232100                0112223333321         5556


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEEC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVS  168 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s  168 (612)
                      ++...++.|.+||. ++.........+...+.++++.++|..+++...++.|..||. +++.... +......+.+++++
T Consensus       114 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~  191 (299)
T 2z2n_A          114 FTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG  191 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             EEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC
Confidence            65566788999999 565543333335567899999999987777767789999998 6665443 22334568899999


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      ++|++.++..  +.|..||. +++.... +..+...+.++++.++|+.+++.. .++.|..||.. +...    .+....
T Consensus       192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~~  264 (299)
T 2z2n_A          192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQI  264 (299)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECSS
T ss_pred             CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCCC
Confidence            9999877764  79999999 6654321 233456789999999998666543 57889999983 3211    122222


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ....+..+.+      ++|.+.++.+ .+.+..++.++.
T Consensus       265 ~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          265 KSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence            2222333333      4566555544 567777776554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=5.7e-10  Score=115.76  Aligned_cols=232  Identities=11%  Similarity=0.024  Sum_probs=150.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++|+|+|+++++...++.|++||..++.......... .                  .. +.|.+.         +..+
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~------------------~~-ia~~~~---------g~~l  185 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-G------------------GK-PAVTKD---------KQRV  185 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-B------------------CB-CEECTT---------SSEE
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-C------------------Cc-eeEecC---------CCcE
Confidence            55999999988777778999999998887765543211 1                  11 333332         6677


Q ss_pred             EEEECCC--cEEEEEcCCCeEEEEe---ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE----EecCCC
Q 007234           90 VLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRASTK  160 (612)
Q Consensus        90 ~~gs~~g--~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~~~~~  160 (612)
                      +++..++  .|.+|+...+.....+   ...+...+.+++++|++..|+.+..++.|+.||..++.....    ..+...
T Consensus       186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~  265 (409)
T 3hrp_A          186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG  265 (409)
T ss_dssp             EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred             EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence            8887766  6999998876543222   121446678999999555666687889999999987753222    111112


Q ss_pred             C--eeEEEECCCCCEEEEe-C--CeEEEEEcCCCeeEEEEecCC---------------CCEEEEEEeeCCcEEEEEEc-
Q 007234          161 G--ISCMAVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV-  219 (612)
Q Consensus       161 ~--v~~l~~spdg~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~---------------~~v~~l~~sp~~~~l~s~s~-  219 (612)
                      .  ...++|+|++..|+.+ .  +.|+.|+....  +..+.++.               .....++++|+|++++ +.. 
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv-ad~~  342 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI-VDGF  342 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE-EETT
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE-EeCC
Confidence            1  1399999964444444 3  79999997654  33444443               3478999999998544 445 


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecC------------CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .++.|+.|++.++...   .+.....            .-.....++++     ++|.++++-..+++|+.+++
T Consensus       343 ~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence            5789999997766432   1111000            01234556665     78877777777888887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=1.7e-09  Score=110.53  Aligned_cols=241  Identities=12%  Similarity=0.072  Sum_probs=153.4

Q ss_pred             EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus        11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ++|||||++++.+.          .++.|.+||..+++.+.++......-.           ........+.|.+.    
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-----------~~g~~p~~~~~spD----  135 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------DVGPYSWMNANTPN----  135 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-----------ccCCCccceEECCC----
Confidence            39999999988875          367899999999988887753200000           00001112333333    


Q ss_pred             ccccCCcEEEEEEC--CCcEEEEEcCCCeEEEE-eccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        81 ~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                           +++++++..  ++.|.++| .+++.+.. +..  ..   ++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus       136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence                 778888774  46799999 99988766 532  12   24556655 44667778999999999 887764322


Q ss_pred             -----cCCCC-eeEEEECCCCCEE-EEeC-CeEEEEEcCCCe--eEEEEec----------CCCCEEEEEEeeCCcEEEE
Q 007234          157 -----ASTKG-ISCMAVSSDGKML-ATAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       157 -----~~~~~-v~~l~~spdg~~l-~~~~-g~i~lwd~~~~~--~~~~~~~----------h~~~v~~l~~sp~~~~l~s  216 (612)
                           ....+ .....+.+++..+ ++.. +.+.+.|+.++.  .+..+.-          .......+.++|+++.++.
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence                 11122 1234556665443 3333 899999987652  2333321          1222445788999988877


Q ss_pred             EEc---------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEECCCcc
Q 007234          217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE  285 (612)
Q Consensus       217 ~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd~~~~~  285 (612)
                      +..         .++.|.++|+.+.+..     ..+.... ....+.++     |||+ +++++. .++.|.+||..+++
T Consensus       284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~~i~~g~-~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EeccCCcccccCCCCeEEEEECCCCEEE-----EEEECCC-CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            642         1357999999887643     2232222 23455676     9999 777777 48999999999998


Q ss_pred             eecc
Q 007234          286 ELRN  289 (612)
Q Consensus       286 ~~~~  289 (612)
                      .++.
T Consensus       353 vv~~  356 (373)
T 2mad_H          353 QDQS  356 (373)
T ss_pred             EEee
Confidence            8765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.34  E-value=6.8e-10  Score=110.48  Aligned_cols=191  Identities=10%  Similarity=0.081  Sum_probs=125.4

Q ss_pred             CcEEEE-------EECCCcEEEEEcCCCeEEEEec---cCCCCCeEEEEEecC-CCEEEEEecCCcEEEEECCCCceeEE
Q 007234           86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        86 ~~~l~~-------gs~~g~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~sp~-~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                      +.++++       ++.++.|.+||+.+++......   .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus        29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~  106 (314)
T 1pjx_A           29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI  106 (314)
T ss_dssp             SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred             CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence            556666       5778899999998887643221   124467899999999 65 4455455579999988 665432


Q ss_pred             -EecC----CCCeeEEEECCCCCEEEEeC-----------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe----
Q 007234          155 -FRAS----TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS----  208 (612)
Q Consensus       155 -~~~~----~~~v~~l~~spdg~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s----  208 (612)
                       ....    ...+.+++++|+|+++++..                 +.|+.||.. ++... +..+......++|+    
T Consensus       107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d  184 (314)
T 1pjx_A          107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMND  184 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTT
T ss_pred             EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccC
Confidence             2211    13578999999999888765                 256677765 54433 33344556889999    


Q ss_pred             eCCcEEEEEEcCCCeEEEEEcC-CCccccceeeEeecCCc-eeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       209 p~~~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      |+++.++.+...++.|.+|++. .+..........+.... .....++++     ++|++.++...++.|.+||..+++
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence            9997776665467899999986 33321111112222221 334556676     889888887788899999876554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.33  E-value=1.3e-10  Score=130.71  Aligned_cols=184  Identities=12%  Similarity=0.020  Sum_probs=121.5

Q ss_pred             CcEEEEEECC-C----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc--------------EEEEEC
Q 007234           86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--------------VCEIDP  146 (612)
Q Consensus        86 ~~~l~~gs~~-g----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~--------------v~iwd~  146 (612)
                      ++.|+.++.+ |    .|++||+.+++.+....  +...+.+++|+|| +.|+.++.|+.              |++|++
T Consensus       174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l  250 (741)
T 1yr2_A          174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL  250 (741)
T ss_dssp             SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence            6677766543 4    49999999998764321  2222367899999 98888876654              899999


Q ss_pred             CCCce--eEEEecC--CCCeeEEEECCCCCEEEEeC--C-----eEEEEEcCCC--eeEEEEecCCCCEEEEEEeeCCcE
Q 007234          147 LTGSL--LGKFRAS--TKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       147 ~~~~~--~~~~~~~--~~~v~~l~~spdg~~l~~~~--g-----~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~  213 (612)
                      .+++.  ...+...  ...+.++.|+|||++|+..+  +     .|++||+.++  +....+..+...+.... +|+|+.
T Consensus       251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~  329 (741)
T 1yr2_A          251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ  329 (741)
T ss_dssp             TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred             CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence            87752  2233332  23588999999999888655  3     8999999887  31456666665555553 588888


Q ss_pred             EEEEEcC---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          214 VLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       214 l~s~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      |+..+..   ++.|.+||+.++. ..  ......+....+..+.+.      ++.++++...||..++|...
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence            8877632   3459999988752 10  112223444445444443      45778888889987777543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=1.7e-10  Score=128.48  Aligned_cols=233  Identities=12%  Similarity=0.053  Sum_probs=148.9

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234           11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus        11 ~~fspdg~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      ++|||||++||.+..     ..+|++||+.+|+.+.... ..                  .....+.|. .         
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~------------------~k~~~~~Ws-D---------  184 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD------------------VKFSGISWL-G---------  184 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE------------------EESCCCEEE-T---------
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC------------------ceeccEEEe-C---------
Confidence            389999999995432     2579999999998654311 00                  001234455 2         


Q ss_pred             CcEEEEEECCC-------------cEEEEEcCCCeE----EEEeccC-CCCCeEEEEEecCCCEEEEEec----CCcEEE
Q 007234           86 SSLLVLGTGGG-------------DVLALAVSAGQL----KWRLSDC-HPGGVSAISFATHGSCIYSAGA----DGMVCE  143 (612)
Q Consensus        86 ~~~l~~gs~~g-------------~I~vwd~~~~~~----~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~----dg~v~i  143 (612)
                      ++.|+.++.+.             .|++|++.++..    +... .. |...+.++.|+|||++|+....    ++.|++
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence            56677776663             399999987652    2211 23 4556789999999998754432    258999


Q ss_pred             EECCCCc-eeEEEecCCCCeeEEEECCCCCEEEE-eC-----CeEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEE
Q 007234          144 IDPLTGS-LLGKFRASTKGISCMAVSSDGKMLAT-AA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       144 wd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~~-~~-----g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l  214 (612)
                      +|+.++. ....+..+....... ++++|..++. +.     +.|..+|+.++..  ...+..|...+.  .|++++++|
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l  340 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL  340 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence            9998764 455566555555554 6666665554 32     5799999988754  345666766665  899999988


Q ss_pred             EEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC----CcEEEEECCCcce
Q 007234          215 LSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIEE  286 (612)
Q Consensus       215 ~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d----g~i~iwd~~~~~~  286 (612)
                      +.....++  .|.+|++.++...    ...+.... .+....++     +++..++....+    +.+..||+.+++.
T Consensus       341 v~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~-~~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          341 FAEYMVDATARVEQFDYEGKRVR----EVALPGLG-SVSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEE----EECCSSSS-EEEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEEECCeeEEEEEECCCCeeE----EeecCCCc-eEEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            88765555  6888888754321    12222222 22333333     677666655444    7899999877653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.32  E-value=2.4e-09  Score=105.51  Aligned_cols=231  Identities=10%  Similarity=0.041  Sum_probs=152.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++++++|+++++...++.|.+||.. ++... +....               . ......+.+.+.         +.+.
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l~   76 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---------------P-DAKVMCLIVSSL---------GDIW   76 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---------------T-TCCEEEEEECTT---------SCEE
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---------------C-CCcceeEEECCC---------CCEE
Confidence            44999999988877778999999987 66543 22100               0 112233333321         5555


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEEC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVS  168 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s  168 (612)
                      ++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.+++++
T Consensus        77 v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             EEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            555557889999988 655422223344678999999999877777668899999987 655422 22234578999999


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      ++|++.++..  +.|..||. +++... ....+...+..+++.++|..+++.. ..+.|.+|+. ++...    ......
T Consensus       155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~~  227 (300)
T 2qc5_A          155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIPT  227 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECSS
T ss_pred             CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECCC
Confidence            9999777664  78999998 555433 1223445688999999998666553 5678999998 33322    122222


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      .......+++.     ++|+..++...++.|..|+.
T Consensus       228 ~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          228 PNARPHAITAG-----KNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred             CCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence            23334556665     78886666666789999987

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=4.7e-10  Score=113.56  Aligned_cols=239  Identities=13%  Similarity=0.140  Sum_probs=158.3

Q ss_pred             EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccC-------CccccccccccccccccccceeEEEe
Q 007234           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus        11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      +++||||++++.+.          .++.|.+||..+++.+.++....       .....+.|+++               
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD---------------  147 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD---------------  147 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence            49999999887665          36789999999999998875322       12334444444               


Q ss_pred             eecccccccccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-Cc
Q 007234           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS  150 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~  150 (612)
                                  +++++++..  ++.|.++|+.+++.+.++...   .+ ...+....+.+++.+.||.+.+.++.+ ++
T Consensus       148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence                        778888764  578999999999998877421   12 222333456677888999999999876 55


Q ss_pred             eeEEEecC----CCCe-eEEEE-CCCCCEEEEeC-CeEEEEEcCCCe--eEEEEe---------c-CCCCEEEEEEeeCC
Q 007234          151 LLGKFRAS----TKGI-SCMAV-SSDGKMLATAA-GQLKTFNCSDHK--KMQKFS---------G-HPGAVRFMTFSDNG  211 (612)
Q Consensus       151 ~~~~~~~~----~~~v-~~l~~-spdg~~l~~~~-g~i~lwd~~~~~--~~~~~~---------~-h~~~v~~l~~sp~~  211 (612)
                      ........    ..++ ....| .++|+++++.. |.|++.|+.++.  .+..+.         + .......++++|++
T Consensus       212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence            53322111    1122 22455 47888777666 999999997653  333332         0 11223347789999


Q ss_pred             cEEEEEEcC---------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEE
Q 007234          212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY  280 (612)
Q Consensus       212 ~~l~s~s~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd  280 (612)
                      +.++..-..         .+.|.+.|+.+.+...   .....+   ....+.++     +|++ +|++.+ .++.|.++|
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~---~i~vg~---~~~~lavs-----~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA---KFEMGH---EIDSINVS-----QDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE---EEEEEE---EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEE---EEECCC---CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence            888776421         2579999999887541   222222   23345666     8886 676655 489999999


Q ss_pred             CCCcceecccC
Q 007234          281 GQNIEELRNTK  291 (612)
Q Consensus       281 ~~~~~~~~~~~  291 (612)
                      ..+++.++.++
T Consensus       361 ~~t~k~~~~i~  371 (386)
T 3sjl_D          361 AESGEELRSVN  371 (386)
T ss_dssp             TTTCCEEEEEC
T ss_pred             CCCCcEEEEec
Confidence            99999887554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.30  E-value=1.8e-10  Score=112.08  Aligned_cols=194  Identities=8%  Similarity=-0.024  Sum_probs=132.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++++|+|+++++.. ++.|.+||..++... .+....                 ......+.+.+.         +.++
T Consensus        71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~-----------------~~~p~~i~~~~~---------g~l~  122 (270)
T 1rwi_B           71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDG-----------------LNYPEGLAVDTQ---------GAVY  122 (270)
T ss_dssp             CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCS-----------------CSSEEEEEECTT---------CCEE
T ss_pred             eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCC-----------------cCCCcceEECCC---------CCEE
Confidence            349999999766665 889999998765433 221100                 012233444331         6666


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~sp  169 (612)
                      ++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||...+............+.++++++
T Consensus       123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~  201 (270)
T 1rwi_B          123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE  201 (270)
T ss_dssp             EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred             EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence            66667788999987665443222 22334678999999998777766788999999877654433333336789999999


Q ss_pred             CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       170 dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +|.++++..  +.|.+||..+.........+...+.+++++++|+.+++.. .++.|+++++...+
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence            998777765  7899999876554332223345689999999998666654 78999999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=3.6e-09  Score=106.21  Aligned_cols=192  Identities=13%  Similarity=0.015  Sum_probs=127.0

Q ss_pred             eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~  148 (612)
                      ....|.+..        +.++++...++.|..||..+++... +.  ....+.++.|+|+|+++++. .+ .|.+||..+
T Consensus        52 egp~~~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~  118 (326)
T 2ghs_A           52 EGPTFDPAS--------GTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT  118 (326)
T ss_dssp             EEEEEETTT--------TEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred             cCCeEeCCC--------CEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence            345676543        5667777788899999999887542 21  34679999999999866654 44 499999988


Q ss_pred             CceeEEEecC----CCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234          149 GSLLGKFRAS----TKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       149 ~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s  216 (612)
                      ++........    ...+..++++|+|+++++..        +.|+.++  +++.. .+..+......++|+|+++.++.
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence            8754332211    13588999999999877653        3566666  55543 33333445788999999998776


Q ss_pred             EEcCCCeEEEEEcC--CC-ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          217 SAVGERYIALWRTD--GV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       217 ~s~~d~~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      +...++.|.+|++.  ++ ..........+.........+++.     ++|.+.++...++.|..||.
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence            65567899999986  44 321111122222223344556665     78887776666778888876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=4.2e-11  Score=121.71  Aligned_cols=183  Identities=8%  Similarity=0.070  Sum_probs=127.8

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +++.|  ++++...++++|+.++ ++||++.+.+....  .....     |.+..... ... ++.+.|   +       
T Consensus        39 ~~nlL--ais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~-----~~~~~~~~-lp~-V~~l~f---d-------   96 (388)
T 1xip_A           39 SLQNL--DISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP-----LTFKWEKE-IPD-VIFVCF---H-------   96 (388)
T ss_dssp             CCBCE--EEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-----CCCSEEEE-CTT-EEEEEE---E-------
T ss_pred             cccEE--EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-----ccceEEee-CCC-eeEEEE---C-------
Confidence            46656  9999999999999884 66798764431000  00000     00000001 112 556666   2       


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                       +..++++ .+|.|++||+.+-...... ..|..++.++.+.+.  .+++++.||.|.+||+.+++...    +...|+|
T Consensus        97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~  167 (388)
T 1xip_A           97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS  167 (388)
T ss_dssp             -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred             -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence             7788888 8899999999876544333 457778988887654  38889999999999999887653    3358999


Q ss_pred             EEECCCCCEEEEeCCeEEEEEcCCCee--EEEE------e---cCCCCEEEEEEeeCCcEEEEEE
Q 007234          165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       165 l~~spdg~~l~~~~g~i~lwd~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ++|+|+|..+..+.|++++|+...++.  .+++      .   +|...|.++.|.+++.++++-+
T Consensus       168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999999943333339999999988875  5566      2   4788899999999999887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.27  E-value=3.2e-09  Score=105.05  Aligned_cols=220  Identities=11%  Similarity=0.070  Sum_probs=137.5

Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +..|+|++. ++++...++.|..||..+++.. .+. ...                  ...++.+.+.         +. 
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~------------------~~~~i~~~~d---------G~-   66 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDA------------------PVSSVALRQS---------GG-   66 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSS------------------CEEEEEEBTT---------SS-
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCC------------------ceEEEEECCC---------CC-
Confidence            348999655 5555566889999999887653 232 111                  2334444332         55 


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEecc--C-CCCCeEEEEEecCCCEEEEEecC-----------CcEEEEECCCCceeEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSD--C-HPGGVSAISFATHGSCIYSAGAD-----------GMVCEIDPLTGSLLGK  154 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~--~-h~~~V~~l~~sp~~~~l~s~s~d-----------g~v~iwd~~~~~~~~~  154 (612)
                      ++++. ++.|.+||..+++.......  . ....+++++++|+|+++++...+           +.|..+|.. ++... 
T Consensus        67 l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-  143 (297)
T 3g4e_A           67 YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-  143 (297)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-
T ss_pred             EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-
Confidence            44454 56799999998875422211  1 12458899999999966654321           344444532 33332 


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEc--CCCee-----EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i  224 (612)
                      +.........++|+||++.|+.+.   +.|.+||+  .++..     +..+..+......+++.++|++.++.. .++.|
T Consensus       144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v  222 (297)
T 3g4e_A          144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRV  222 (297)
T ss_dssp             EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEE
T ss_pred             EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEE
Confidence            333334568999999999776554   78999997  45543     223333445678999999998766654 57889


Q ss_pred             EEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      .+||..+++..     ..+..+...+.+++|.    .|+++.|++++.
T Consensus       223 ~~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~  261 (297)
T 3g4e_A          223 IRLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA  261 (297)
T ss_dssp             EEECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred             EEEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence            99999877643     3333443445666674    256666666554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.25  E-value=6.5e-09  Score=102.33  Aligned_cols=229  Identities=10%  Similarity=0.032  Sum_probs=147.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++++++|+++++...++.|..||.. ++.. .+....               . ......+...+.         +.+.
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l~  118 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDIW  118 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCEE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCEE
Confidence            44899999987777667889999987 6653 232110               0 112233333321         5566


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE-EecCCCCeeEEEEC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVS  168 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s  168 (612)
                      ++...++.|..||.. ++............+.++++.++|+.+++...++.|..+|. +++.... .......+.+++++
T Consensus       119 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  196 (300)
T 2qc5_A          119 FTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG  196 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             EEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC
Confidence            655557889999988 66543222334567899999999986666666788999998 5654432 12233468999999


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (612)
                      ++|++.++..  +.|..||. +++.... +..+...+.++++.++|+.+++. ..++.|..|+.. +...    .+....
T Consensus       197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~-~~~~~i~~~~~~-g~~~----~~~~~~  269 (300)
T 2qc5_A          197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE-WGANQIGRITND-NTIQ----EYQLQT  269 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE-TTTTEEEEECTT-SCEE----EEECCS
T ss_pred             CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec-cCCCeEEEECCC-CcEE----EEECCc
Confidence            9998877765  68999998 5543332 33445678899999999866554 357889999983 3321    122222


Q ss_pred             CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ....+..+.+.     ++|++.++.. . .|..+|.
T Consensus       270 ~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          270 ENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred             cCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence            22233445555     7887655544 4 6776664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.25  E-value=3e-09  Score=107.71  Aligned_cols=275  Identities=13%  Similarity=0.020  Sum_probs=164.2

Q ss_pred             CcEEEEEEC-----CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCc
Q 007234           86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~-----~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~  150 (612)
                      ++.+++...     ++.|.++|..+++.+.++..+.. + . +.++|||+++++++          .++.|.+||..+++
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            566777665     57899999999999988854433 3 4 99999999988876          36789999999999


Q ss_pred             eeEEEecCC-------CCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       151 ~~~~~~~~~-------~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      .+.++....       .....++++|||++++++.    +.|.++|+.+++.+.++.-..  . ...+....+.+++.+ 
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~-  196 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC-  196 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence            998886432       2467899999999888763    689999999999999886322  1 223333345566665 


Q ss_pred             CCCeEEEEEcCC-CccccceeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc--eecccC---C
Q 007234          220 GERYIALWRTDG-VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK---A  292 (612)
Q Consensus       220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~--~~~~~~---~  292 (612)
                      .||.+.+.++.. ++... .....+. ..........|.    .++|++++ .+.+|++++.|..+..  .+....   .
T Consensus       197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             CCCCEEEEECCCCCeEEE-eecceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence            688888888876 43210 0000000 001111111221    26776555 6668999999986654  222111   0


Q ss_pred             ----ceeEee--cccccCCCCcccchhhhcccc---cceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-
Q 007234          293 ----TKILSS--SEDVNSKSQKSATAAIFAAKL---QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-  362 (612)
Q Consensus       293 ----~~~~~~--~~~~~s~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~-  362 (612)
                          ......  ....+.++++    .+.....   ++.-+....++++.+-.. +.+..++..-. .++.+++|+||+ 
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~-~~~~lavs~D~~~  344 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGH-EIDSINVSQDEKP  344 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEE-EECEEEECSSSSC
T ss_pred             ccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCC-CcceEEECCCCCe
Confidence                000000  0001123333    2222211   111111123566666443 33344444332 678999999997 


Q ss_pred             eEeccccceeeecceee
Q 007234          363 LLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       363 ~l~~s~s~d~~~~~w~~  379 (612)
                      +|.++...++.+.+.+.
T Consensus       345 ~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EEEEEcCCCCeEEEEEC
Confidence            56354555777777776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=1.1e-09  Score=121.15  Aligned_cols=241  Identities=17%  Similarity=0.194  Sum_probs=157.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeecc-CCcc-ccccccccccccccccceeEEEeeecccccccccCCcEEEEEE
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs   93 (612)
                      ++..+++++.|+.|..+|..+|+.+..+... .... .....++             +.   .         +..+++++
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-------------~v---~---------~g~v~vg~  174 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-------------RV---V---------NGKVVIGN  174 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-------------EE---E---------TTEEEECC
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-------------EE---E---------CCEEEEEe
Confidence            3567888888999999999999999887642 1000 0000000             00   0         34455554


Q ss_pred             C------CCcEEEEEcCCCeEEEEeccCC------------------------------CCCeEEEEEecCCCEEEEEec
Q 007234           94 G------GGDVLALAVSAGQLKWRLSDCH------------------------------PGGVSAISFATHGSCIYSAGA  137 (612)
Q Consensus        94 ~------~g~I~vwd~~~~~~~~~~~~~h------------------------------~~~V~~l~~sp~~~~l~s~s~  137 (612)
                      .      +|.|..||..+|+.++++....                              ......+++.|++..++.++.
T Consensus       175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~  254 (689)
T 1yiq_A          175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG  254 (689)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence            3      6789999999999998874211                              011125788998889999887


Q ss_pred             CCc-------------------EEEEECCCCceeEEEecCCC---------CeeEEEECCCCC---EEEEeC--CeEEEE
Q 007234          138 DGM-------------------VCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTF  184 (612)
Q Consensus       138 dg~-------------------v~iwd~~~~~~~~~~~~~~~---------~v~~l~~spdg~---~l~~~~--g~i~lw  184 (612)
                      ++.                   |..||..+|+.+-.++....         ++.......+|+   .++.++  |.++++
T Consensus       255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence            764                   99999999999888765211         122222233565   677776  899999


Q ss_pred             EcCCCeeEEEEecCC-CC--------------------------------------EEEEEEeeCCcEEEEEEcC-----
Q 007234          185 NCSDHKKMQKFSGHP-GA--------------------------------------VRFMTFSDNGKYVLSSAVG-----  220 (612)
Q Consensus       185 d~~~~~~~~~~~~h~-~~--------------------------------------v~~l~~sp~~~~l~s~s~~-----  220 (612)
                      |.++|+.+....-.. ..                                      -..++|+|+...+++....     
T Consensus       335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  414 (689)
T 1yiq_A          335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY  414 (689)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred             ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence            999999874432111 00                                      1126788887777765311     


Q ss_pred             ---------------------------------------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccC
Q 007234          221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD  261 (612)
Q Consensus       221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (612)
                                                             ++.|..||+.+++..     .....+...... .+.     
T Consensus       415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g-~~~-----  483 (689)
T 1yiq_A          415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-----WEVPYVTIFNGG-TLS-----  483 (689)
T ss_dssp             ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-----EEEEESSSCCCC-EEE-----
T ss_pred             eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-----eEccCCCCccCc-cce-----
Confidence                                                   377999999998754     333322222221 222     


Q ss_pred             CCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          262 DAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       262 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      ..+..++.++.||.++.||.++|+.+..++.
T Consensus       484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            4567889999999999999999999876543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=1.5e-09  Score=111.83  Aligned_cols=237  Identities=13%  Similarity=0.123  Sum_probs=158.2

Q ss_pred             EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeecc-------CCccccccccccccccccccceeEEEe
Q 007234           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW   73 (612)
Q Consensus        11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~w   73 (612)
                      +++||||++++.+.          .++.|.++|..+++.+.++...       ......+.|+++               
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD---------------  187 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD---------------  187 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence            39999999887765          3678999999999999887532       122344455554               


Q ss_pred             eecccccccccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCc
Q 007234           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS  150 (612)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~  150 (612)
                                  +++++++..  ++.|.+.|+.+++.+.++..+.   .  ....|++ ..+++.+.||.+.+.+..+++
T Consensus       188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence                        778888874  5779999999999987775321   1  2344443 556777788888888886665


Q ss_pred             eeEE----EecCCCC-eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE--EEEec----------CCCCEEEEEEeeCC
Q 007234          151 LLGK----FRASTKG-ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSG----------HPGAVRFMTFSDNG  211 (612)
Q Consensus       151 ~~~~----~~~~~~~-v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~--~~~~~----------h~~~v~~l~~sp~~  211 (612)
                      ....    +.....+ ...+.+.+++..++...  +.+++.|.......  ..+.-          .......++++|++
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg  330 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS  330 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence            5432    2111222 12456789888766555  89999998765421  11110          01111236899998


Q ss_pred             cEEEEEEc---------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEEe-cCCcEEEEE
Q 007234          212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY  280 (612)
Q Consensus       212 ~~l~s~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd  280 (612)
                      +.++....         .++.|.++|+.+.+..     ..+.-.. ....+.++     +||+ ++++.. .++.|.++|
T Consensus       331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~-~P~gia~s-----pDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGH-EIDSINVS-----QDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCC-CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence            87777642         1357999999998754     2222111 23455676     9998 888888 489999999


Q ss_pred             CCCcceeccc
Q 007234          281 GQNIEELRNT  290 (612)
Q Consensus       281 ~~~~~~~~~~  290 (612)
                      ..+++.++.+
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999988654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=1.9e-08  Score=100.93  Aligned_cols=218  Identities=14%  Similarity=0.100  Sum_probs=135.6

Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ..+|+|++. ++++...++.|..||..+++.. .+..                   .....++.|.+.         +.+
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-------------------~~~v~~i~~~~d---------g~l  103 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-------------------PFMGSALAKISD---------SKQ  103 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-------------------SSCEEEEEEEET---------TEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-------------------CCcceEEEEeCC---------CeE
Confidence            458999855 4555556889999999887643 2321                   113445555543         444


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEecc--CC-CCCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCC
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~--~h-~~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                      ++ ++.+ .|.+||..+++.......  .. ...+.++.++|+|+++++...      .+.|..+|  +++.. .+....
T Consensus       104 ~v-~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          104 LI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EE-EECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            44 4544 499999988876422211  11 246899999999987665432      24566666  45443 332233


Q ss_pred             CCeeEEEECCCCCEEEEeC---CeEEEEEcC--CC-e-----eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-K-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~-~-----~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      .....++|+|||+.++.+.   +.|++||+.  ++ +     .+..+.........+++.++|.++++.. .++.|.+|+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d  257 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD  257 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence            4568999999998776553   799999986  55 3     2233333445678899999998776654 568899999


Q ss_pred             cCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      .. ++..     ..+..+...+.+++|.    .+++..|++++.
T Consensus       258 ~~-g~~~-----~~i~~~~~~~~~~af~----g~d~~~L~vt~~  291 (326)
T 2ghs_A          258 TD-GNHI-----ARYEVPGKQTTCPAFI----GPDASRLLVTSA  291 (326)
T ss_dssp             TT-CCEE-----EEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred             CC-CCEE-----EEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence            83 4322     2233334345566664    156666655544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=1.9e-09  Score=119.08  Aligned_cols=242  Identities=17%  Similarity=0.237  Sum_probs=161.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeecc-CCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~   94 (612)
                      ++..++.++.|+.|..+|..+|+.+..+... .........+.+           .+    .         +..+++++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p-----------~v----~---------~~~v~v~~~  182 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP-----------RV----F---------KGKVIIGNG  182 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC-----------EE----E---------TTEEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc-----------EE----E---------CCEEEEEec
Confidence            4567888888999999999999999888643 110000000000           00    0         445666654


Q ss_pred             ------CCcEEEEEcCCCeEEEEeccCCCC-------------------------------CeEEEEEecCCCEEEEEec
Q 007234           95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA  137 (612)
Q Consensus        95 ------~g~I~vwd~~~~~~~~~~~~~h~~-------------------------------~V~~l~~sp~~~~l~s~s~  137 (612)
                            +|.|+.||..+|+.++++......                               ....++++|++..++.++.
T Consensus       183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~  262 (677)
T 1kb0_A          183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG  262 (677)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence                  688999999999999887432111                               1135788998889888876


Q ss_pred             CC-------------------cEEEEECCCCceeEEEecCC---------CCeeEEEECCCC---CEEEEeC--CeEEEE
Q 007234          138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF  184 (612)
Q Consensus       138 dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~spdg---~~l~~~~--g~i~lw  184 (612)
                      ++                   .|..+|..+|+.+-.++...         .....+....+|   +.++.++  |.++++
T Consensus       263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l  342 (677)
T 1kb0_A          263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL  342 (677)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence            64                   59999999999988876422         122233333477   5677776  899999


Q ss_pred             EcCCCeeEEEEecCCC-----------CE------------------------EEEEEeeCCcEEEEEEcC---------
Q 007234          185 NCSDHKKMQKFSGHPG-----------AV------------------------RFMTFSDNGKYVLSSAVG---------  220 (612)
Q Consensus       185 d~~~~~~~~~~~~h~~-----------~v------------------------~~l~~sp~~~~l~s~s~~---------  220 (612)
                      |.++|+.+..+.-...           ++                        ..++|+|++..+++....         
T Consensus       343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred             ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence            9999998876642211           11                        146889988877765420         


Q ss_pred             ---------------------------------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE
Q 007234          221 ---------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV  267 (612)
Q Consensus       221 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (612)
                                                       .+.|..||+.+++..     ....+........ +.     .++..+
T Consensus       423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----~~g~~v  491 (677)
T 1kb0_A          423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----WSVEHVSPWNGGT-LT-----TAGNVV  491 (677)
T ss_dssp             TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEE
T ss_pred             ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----eecCCCCCCcCcc-eE-----eCCCEE
Confidence                                             278999999998744     2332222222211 22     456788


Q ss_pred             EEEecCCcEEEEECCCcceecccCC
Q 007234          268 LAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       268 ~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      +.++.||.+++||..+++.+..+..
T Consensus       492 ~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          492 FQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCcEEEEECCCCceeeeeeC
Confidence            8899999999999999999876553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.16  E-value=1.8e-08  Score=104.44  Aligned_cols=187  Identities=12%  Similarity=0.066  Sum_probs=124.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEE----ecCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~----~~~~  159 (612)
                      +.++++...++.|++||+.++....... . ..... ++|+|+++.|++++.++  .|..||...+.....+    ....
T Consensus       142 g~lyv~d~~~~~I~~id~~~g~~~~~~~-~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~  218 (409)
T 3hrp_A          142 NTVLAYQRDDPRVRLISVDDNKVTTVHP-G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS  218 (409)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEE-T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred             CCEEEEecCCCcEEEEECCCCEEEEeec-c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence            5666666667889999999887764432 2 23334 99999999999988766  7999998766554444    2134


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEE----EecCCCCE--EEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~----~~~h~~~v--~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ..+.+++++|++..|+++.  +.|+.||..++.....    ..++...-  ..++|+|++..|+.+...++.|+.|+...
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            5678999999544444455  7899999987753222    22222222  38999996555555555788999998765


Q ss_pred             CccccceeeEeecCC--------------ceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcce
Q 007234          232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEE  286 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~  286 (612)
                      .. .    .. ..+.              -.....++++     ++|++.++-+ .++.|+.|+..++..
T Consensus       299 ~~-~----~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          299 EC-E----WF-CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             CE-E----EE-EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CE-E----EE-EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            31 1    11 1111              1224566676     8999777777 788999999776653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=2e-09  Score=110.91  Aligned_cols=234  Identities=7%  Similarity=-0.063  Sum_probs=144.7

Q ss_pred             CCCCEEEEEeC-C----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           15 PALDYFAICSG-D----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        15 pdg~~las~s~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      |+++++..+.. +    +.|.++|..+++.+.++.....+  .+.++++                           ++.+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpD---------------------------gk~l  132 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAED---------------------------GSFF  132 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT---------------------------SSCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCC---------------------------CCEE
Confidence            57776665544 3    69999999999999988754333  4555555                           6666


Q ss_pred             EEEE----------CCCcEEEEEcCCCeEEEEeccC------CCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCce
Q 007234           90 VLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL  151 (612)
Q Consensus        90 ~~gs----------~~g~I~vwd~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~  151 (612)
                      +++.          .++.|.++|..+++.+.++.-+      .......+.|+|||++++++..  ++.|.+.|+.+++.
T Consensus       133 yVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv  212 (426)
T 3c75_H          133 AQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF  212 (426)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence            6665          4677999999999988776422      1234568899999999999874  57899999999999


Q ss_pred             eEEEecCCCCeeEEEECCCC-CEEEE-eC-CeEEEEEcCCCeeEEE----EecCCCCE-EEEEEeeCCcEEEEEEcCCCe
Q 007234          152 LGKFRASTKGISCMAVSSDG-KMLAT-AA-GQLKTFNCSDHKKMQK----FSGHPGAV-RFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg-~~l~~-~~-g~i~lwd~~~~~~~~~----~~~h~~~v-~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      +.++.....    ....|++ +.+++ .. |.+.+.+..+++....    +.-...++ ..+.|.+++..++..+ ..+.
T Consensus       213 v~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~  287 (426)
T 3c75_H          213 DRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGK  287 (426)
T ss_dssp             EEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSE
T ss_pred             EEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCc
Confidence            988875321    2233333 22222 22 6666666655554422    11111221 1356788888777776 5789


Q ss_pred             EEEEEcCCCccccceeeEeec--C---CceeE---EeEEecCCccCCCCcEEEEEec----------CCcEEEEECCCcc
Q 007234          224 IALWRTDGVKKQSASCVLAME--H---PAVFM---DCRCIDNGGVDDAGLYVLAISE----------TGVCYIWYGQNIE  285 (612)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~--~---~~~~~---~~~~~~~~~~~~~~~~l~t~s~----------dg~i~iwd~~~~~  285 (612)
                      +.+.|......... ..+...  .   .....   ..+.++     ++++++++...          ++.|.++|..+.+
T Consensus       288 V~ViD~~~~~~~v~-~~~~~~~~~~i~~g~~p~g~~~va~s-----~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          288 IFQADLTAEGATFR-APIEALTEAERADDWRPGGWQQTAYH-----RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EEEEEECSSCEEEC-CCEESSCTTTGGGTEEECSSSCEEEE-----GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EEEEeccCCceEEe-eeeeeccccccccccccCCceeeEEc-----CCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            99999866532100 000100  0   00000   013444     77777666542          3468888877776


Q ss_pred             eec
Q 007234          286 ELR  288 (612)
Q Consensus       286 ~~~  288 (612)
                      .+.
T Consensus       362 vv~  364 (426)
T 3c75_H          362 RIN  364 (426)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=9.6e-09  Score=113.75  Aligned_cols=199  Identities=12%  Similarity=0.156  Sum_probs=128.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +..+++++.++.|..+|..+|+.+..+..............    .......  ..+            +..+++++.+|
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~------------~g~v~v~~~dg  131 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACC----DAVNRGV--AVW------------KGKVYVGVLDG  131 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCC--EEE------------TTEEEEECTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccc----cCCCCcc--EEE------------CCEEEEEccCC
Confidence            45677777889999999999999998864332111000000    0000000  001            56789999999


Q ss_pred             cEEEEEcCCCeEEEEeccC-CCCCeEEEEEec---CCCEEEEEe------cCCcEEEEECCCCceeEEEecCC-------
Q 007234           97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST-------  159 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp---~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~-------  159 (612)
                      .|..+|..+|+.++++... +......+..+|   ++ .++.++      .+|.|+.||..+|+.+-.+....       
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            9999999999999887543 211111111112   44 445443      37899999999999987775311       


Q ss_pred             ------------------------CCeeEEEECCCCCEEEEeC--C-------------------eEEEEEcCCCeeEEE
Q 007234          160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK  194 (612)
Q Consensus       160 ------------------------~~v~~l~~spdg~~l~~~~--g-------------------~i~lwd~~~~~~~~~  194 (612)
                                              .....++++|++.+++.+.  +                   .|..+|.++|+.+..
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~  290 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH  290 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence                                    0112578899888888876  3                   399999999999887


Q ss_pred             Eec--CC-------CCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       195 ~~~--h~-------~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ++.  |.       .++.......+|+   .++.++ .+|.++++|..+++..
T Consensus       291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL  342 (689)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence            764  21       2222223334665   566665 7999999999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=8.6e-09  Score=104.97  Aligned_cols=232  Identities=11%  Similarity=-0.006  Sum_probs=146.0

Q ss_pred             EEc--CCCCEEEEEe-CCCcEEEEECCCC----cEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        12 ~fs--pdg~~las~s-~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++  +++++|...+ .+++|.|+|+.+.    +...++...  .+.    .   ..+. + ....+...+ +       
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~----~---~~g~-s-~Ph~~~~~p-d-------  148 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVK----K---VSGY-S-RLHTVHCGP-D-------  148 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHH----H---HHCE-E-EEEEEEECS-S-------
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcc----c---ccCC-C-cccceeECC-C-------
Confidence            457  8888877655 5889999999766    555555200  000    0   0000 0 000111111 1       


Q ss_pred             CCcEEEEEECC------CcEEEEEcCCCeEEEEeccC-CC-CCeEEEEEecCCCEEEEEe-------------------c
Q 007234           85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A  137 (612)
Q Consensus        85 ~~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~-h~-~~V~~l~~sp~~~~l~s~s-------------------~  137 (612)
                       + +++++..+      |.|.++|..+++.+.++..+ .. .--..+.|+|+++.+++..                   .
T Consensus       149 -G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          149 -A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             -C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             -e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence             4 55555554      67999999999999887533 22 2234688999999888884                   3


Q ss_pred             CCcEEEEECCCCceeEEEecCC--CCeeEEEE--CCCCCEEEEeC--------CeEEEEEcCCCee--EEEE--ecC---
Q 007234          138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQKF--SGH---  198 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--spdg~~l~~~~--------g~i~lwd~~~~~~--~~~~--~~h---  198 (612)
                      +.+|.+||+.+++.+.++....  .....+.|  +|++++++++.        ++|.+|..+.++.  .+.+  ...   
T Consensus       227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            6899999999998888887642  24456666  99999877643        5887776655432  1111  110   


Q ss_pred             -------------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCc----------e----eEE
Q 007234          199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA----------V----FMD  251 (612)
Q Consensus       199 -------------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----------~----~~~  251 (612)
                                   ......|.++|||++|+++....+.|.+||+.......  .+....-..          .    ...
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~--lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV--LTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE--EEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE--EEEEEEeCCeeccccccccccCCCCCC
Confidence                         23467899999999999988778899999986432111  111111110          0    134


Q ss_pred             eEEecCCccCCCCcEEEEEe
Q 007234          252 CRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       252 ~~~~~~~~~~~~~~~l~t~s  271 (612)
                      .+.++     |||++|+++.
T Consensus       385 ~~~lS-----pDGk~LyVaN  399 (462)
T 2ece_A          385 MLEIS-----RDGRRVYVTN  399 (462)
T ss_dssp             CEEEC-----TTSSEEEEEC
T ss_pred             EEEEc-----CCCCEEEEEc
Confidence            55666     9999999998

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.13  E-value=3.3e-11  Score=123.38  Aligned_cols=223  Identities=9%  Similarity=0.027  Sum_probs=119.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      ++..+++++.||.|..||..+|+.+..+..  +.+.+..+..+                           +..+++++.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~---------------------------g~~~v~~s~d   58 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE---------------------------EPAFLPDPND   58 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC---------------------------CCEEEEeCCC
Confidence            578899999999999999999999988864  22221111111                           4567777899


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeE-EEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l  174 (612)
                      |.|+.||..+|+.++.........+. +..+. ++..+++++.|+.|+.||..+|+.+..+..+.    ...++|++..+
T Consensus        59 g~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v  133 (369)
T 2hz6_A           59 GSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLL  133 (369)
T ss_dssp             CCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------E
T ss_pred             CEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEE
Confidence            99999999999887665321111110 11111 34567888899999999999999887776543    23456777788


Q ss_pred             EEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC---cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCcee
Q 007234          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (612)
Q Consensus       175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (612)
                      ++++  +.|+.||.++++.+.++..+.  .....+.++.   ..+++++ .|+.+..||..+++..     .........
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~-----W~~~~~~pv  205 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL-----WIQNYASPV  205 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE-----EEEECSSCE
T ss_pred             EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE-----EEecCCCce
Confidence            7776  899999999998766654221  1223333331   3455565 6999999999988743     333333333


Q ss_pred             EEeEEecCCccCCCCcEEEE--EecCCcEEEEECCCcc
Q 007234          250 MDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE  285 (612)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~t--~s~dg~i~iwd~~~~~  285 (612)
                      .....++     ++|...+.  ...++.++.+|..+|+
T Consensus       206 ~~~~~~~-----~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          206 VAFYVWQ-----REGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             EEEEECT-----TSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEec-----CCceEeccceeecccceeeeehhcCC
Confidence            3433443     55543211  0114456666666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=3e-09  Score=107.65  Aligned_cols=239  Identities=8%  Similarity=0.057  Sum_probs=142.4

Q ss_pred             EEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .++++|+|+++++...  ++.++||.+.+++. ..|.....         . .++++ .....+.+.+.         +.
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~---------~-~~~~~-~~p~gv~~d~~---------g~   79 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG---------N-AIITF-DTVLGIKSDGN---------GI   79 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS---------S-CCCCC-SCEEEEEECSS---------SE
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc---------C-cccce-eEeeEEEEcCC---------Cc
Confidence            3499999999888642  34355665545543 23321110         0 01111 12334444332         45


Q ss_pred             EEEEEEC-----CCcEEEEEcCCCeEEEEecc-----CCCCCeEEEEEecCCCEE-EEEe---cCCcEEEEECCCCceeE
Q 007234           88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCI-YSAG---ADGMVCEIDPLTGSLLG  153 (612)
Q Consensus        88 ~l~~gs~-----~g~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l-~s~s---~dg~v~iwd~~~~~~~~  153 (612)
                      +.++-+.     ++.|.+||+.+++.+..+..     .+...+.++++++++..+ ++..   .++.|.+||+.+++..+
T Consensus        80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            4554433     57899999999987655431     123457899999865555 4444   57899999998887666


Q ss_pred             EEecCC-----------------------------CCeeEEEECCCCCEEEEeC---CeEEEEEcC---CCe-----eEE
Q 007234          154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DHK-----KMQ  193 (612)
Q Consensus       154 ~~~~~~-----------------------------~~v~~l~~spdg~~l~~~~---g~i~lwd~~---~~~-----~~~  193 (612)
                      .+..|.                             ..+..|+|+|||+.|+++.   +.++.++..   .+.     ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            553311                             2368899999999888776   466666542   110     000


Q ss_pred             --EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234          194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       194 --~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s  271 (612)
                        ...++.+....++++++|..+++.. .++.|.+||..+++..   .+.... .......+++.     +++.++++.+
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~  309 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN  309 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred             ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence              1224444566789999998777654 6889999998455422   122211 13345667776     7787777776


Q ss_pred             cCCcEEEE
Q 007234          272 ETGVCYIW  279 (612)
Q Consensus       272 ~dg~i~iw  279 (612)
                      ..+.+.+|
T Consensus       310 ~~~~~~~f  317 (343)
T 2qe8_A          310 QLHHSAPL  317 (343)
T ss_dssp             CGGGSGGG
T ss_pred             cccccccc
Confidence            65554444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=2.1e-08  Score=96.12  Aligned_cols=190  Identities=12%  Similarity=0.040  Sum_probs=135.2

Q ss_pred             EEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +|+|||.++++.+.  ++.|+++|+.+++.+..+.....                 .....+.+.  .        +.+.
T Consensus        27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-----------------~fgeGi~~~--g--------~~ly   79 (266)
T 2iwa_A           27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-----------------YFGEGLTLL--N--------EKLY   79 (266)
T ss_dssp             EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----------------CCEEEEEEE--T--------TEEE
T ss_pred             EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----------------cceEEEEEe--C--------CEEE
Confidence            99999866665553  57999999999999988752110                 001112221  0        3344


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (612)
                      ++.-.++.+.++|..+.+.+.++..+ ...  ...+++||+.++++..++.|.++|..+.+.+..+....     ..+..
T Consensus        80 v~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           80 QVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            44556678999999999998887543 121  34466788888888788999999999999888876432     13667


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-------------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      +.|. +|+..+...  +.|.+.|..+++.+..+.-.             ....+.|+|+|+++.++.++.....+.+.++
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            8888 776555543  89999999999998888631             1346899999999877777766788888887


Q ss_pred             CCC
Q 007234          230 DGV  232 (612)
Q Consensus       230 ~~~  232 (612)
                      ...
T Consensus       236 ~~~  238 (266)
T 2iwa_A          236 HLV  238 (266)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=9.2e-09  Score=102.16  Aligned_cols=220  Identities=15%  Similarity=0.117  Sum_probs=134.5

Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fspdg~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .+|+|+|+ ++++...++.|..|+. +++. ..+......+                  ..+.|.+.         ++++
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~------------------~gl~~d~d---------G~l~  100 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFT------------------NGNAVDAQ---------QRLV  100 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCE------------------EEEEECTT---------SCEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCcc------------------ceeeECCC---------CCEE
Confidence            48999999 5556666889999998 4553 3343222222                  23333322         6655


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEec--cC-CCCCeEEEEEecCCCEEEE----Eec-------------CCcEEEEECCCC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPLTG  149 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~--~~-h~~~V~~l~~sp~~~~l~s----~s~-------------dg~v~iwd~~~~  149 (612)
                      ++...++.|.+|+.. ++......  .+ ....+.++++.|+|+.+++    |..             .+.|..||..++
T Consensus       101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g  179 (305)
T 3dr2_A          101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS  179 (305)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred             EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence            444455779999986 55432111  11 1234678999999997776    322             256888888777


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCee--EEEE-ecCCCCEEEEEEeeCCcEEEEEE
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~--~~~~-~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      +.....  .......++|+||++.|+++.        +.|++|++..+..  ...+ ....+....+++.++|++.+ ++
T Consensus       180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~  256 (305)
T 3dr2_A          180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS  256 (305)
T ss_dssp             CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC
T ss_pred             cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec
Confidence            654433  334568899999999777654        3799999876541  1112 11233456788999998544 33


Q ss_pred             cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~  277 (612)
                       .+ .|.+|+... +..     ..+..+. ....++|.     ++++.|+.++.++..+
T Consensus       257 -~~-gv~~~~~~g-~~~-----~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          257 -GT-GVCVFDSDG-QLL-----GHIPTPG-TASNCTFD-----QAQQRLFITGGPCLWM  301 (305)
T ss_dssp             -SS-EEEEECTTS-CEE-----EEEECSS-CCCEEEEC-----TTSCEEEEEETTEEEE
T ss_pred             -CC-cEEEECCCC-CEE-----EEEECCC-ceeEEEEe-----CCCCEEEEEcCCeEEE
Confidence             34 489999743 322     2222233 24556676     7888888887765433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.07  E-value=2.7e-08  Score=104.85  Aligned_cols=240  Identities=9%  Similarity=0.032  Sum_probs=158.6

Q ss_pred             CCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee-cccccccccCCcEEEEE
Q 007234           15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKKKRKLGSSLLVLG   92 (612)
Q Consensus        15 pdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~l~~g   92 (612)
                      |||+++..+.. +++|.+.|+.+.++...+.-..+                 .....+.... ++        +.+++++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-----------------~~phg~~~~~~p~--------~~~v~~~  153 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-----------------KGIHGLRPQKWPR--------SNYVFCN  153 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-----------------CSEEEEEECCSSB--------CSEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-----------------CCCcceeeeecCC--------CcEEEEe
Confidence            38888887766 56799999999998885542111                 1111222211 11        5666666


Q ss_pred             E------------------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC---------------
Q 007234           93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---------------  139 (612)
Q Consensus        93 s------------------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg---------------  139 (612)
                      +                  .++.+.++|..+.+..+++.-+-  ....++++|+|+++++++.+.               
T Consensus       154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d  231 (595)
T 1fwx_A          154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  231 (595)
T ss_dssp             ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence            4                  23459999999999988886432  456788999999988887543               


Q ss_pred             -----------------------cEEEEECCC--Cce-eEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe
Q 007234          140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK  190 (612)
Q Consensus       140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~  190 (612)
                                             .|.+.|..+  ++. +..+... ....++.++|||+++++++   ++|.++|+.+.+
T Consensus       232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~  310 (595)
T 1fwx_A          232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  310 (595)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence                                   477888877  544 5555543 3568899999999999887   799999998653


Q ss_pred             ------------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc------cccceeeEeecCCceeEEe
Q 007234          191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK------KQSASCVLAMEHPAVFMDC  252 (612)
Q Consensus       191 ------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~  252 (612)
                                  .+.++.- ......++|+|+| +++++..-|+.|.+||+.+..      .. ...+..+..+...-..
T Consensus       311 ~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yqpGh~  387 (595)
T 1fwx_A          311 AVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQPGHL  387 (595)
T ss_dssp             HHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSCEEEE
T ss_pred             cccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccccccc
Confidence                        3344432 2446889999999 777777789999999987621      10 1123333333222111


Q ss_pred             EEecCCccCCCCcEEEEEec-C-CcE-----------EEEECCCcc
Q 007234          253 RCIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE  285 (612)
Q Consensus       253 ~~~~~~~~~~~~~~l~t~s~-d-g~i-----------~iwd~~~~~  285 (612)
                      .......+++||++|++.+. . .++           .++|+..++
T Consensus       388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            22222334599999999865 1 233           889985544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.03  E-value=9.9e-08  Score=97.62  Aligned_cols=235  Identities=9%  Similarity=0.024  Sum_probs=145.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      ++..+..++.++.|..+|..+|+.+..+........    ...     ......+.. .. .        +..+++++.+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~-----~~~~~~~~~-~~-~--------~~~v~v~~~~  112 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSK-----EPALLSGGV-TV-S--------GGHVYIGSEK  112 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSC-----CCCCEEEEE-EE-E--------TTEEEEEETT
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccc-----cCcccccCc-eE-e--------CCEEEEEcCC
Confidence            356777888899999999999999877653221000    000     000000000 00 1        5678899999


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCe-----eEEEECCC
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD  170 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~spd  170 (612)
                      |.|..+|..+|+.+++.... ..........  +..++.++.++.|..+|..+|+.+..+.......     ...... +
T Consensus       113 g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~  188 (376)
T 3q7m_A          113 AQVYALNTSDGTVAWQTKVA-GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F  188 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECS-SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred             CEEEEEECCCCCEEEEEeCC-CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence            99999999999998876432 1111122222  4478888899999999999999887776432211     222222 3


Q ss_pred             CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC----------E-EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       171 g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~----------v-~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      + .++++.  +.+..+|.++++.+.+.......          + ....+  .+..++.++ .++.+..+|..+++..  
T Consensus       189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~--  262 (376)
T 3q7m_A          189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM--  262 (376)
T ss_dssp             T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred             C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence            4 455554  89999999999987766532110          1 01111  234566665 6889999999988744  


Q ss_pred             eeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                         ....... . ....       .++..++.++.+|.|..+|..+++.+....
T Consensus       263 ---w~~~~~~-~-~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          263 ---WKRELGS-V-NDFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             ---EEECCCC-E-EEEE-------EETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             ---eeccCCC-C-CCce-------EECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence               2222211 1 1122       235678888899999999999998765443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.02  E-value=7.8e-08  Score=95.36  Aligned_cols=190  Identities=13%  Similarity=0.073  Sum_probs=118.8

Q ss_pred             eEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC
Q 007234           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (612)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~  148 (612)
                      ....|.+..        ..+++++..++.|..|+. ++... .+ ..+...+.+++++++|+++++...++.|..||.. 
T Consensus        48 egp~~~~~g--------~~l~~~d~~~~~i~~~~~-~g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           48 EGPAWWEAQ--------RTLVWSDLVGRRVLGWRE-DGTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEEEEEGGG--------TEEEEEETTTTEEEEEET-TSCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCCeEeCCC--------CEEEEEECCCCEEEEEeC-CCCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            345666542        336777778889999998 45432 23 2355678999999999866655556789999975 


Q ss_pred             CceeEEEecC----CCCeeEEEECCCCCEEEE----eC---------------CeEEEEEcCCCeeEEEEecCCCCEEEE
Q 007234          149 GSLLGKFRAS----TKGISCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFM  205 (612)
Q Consensus       149 ~~~~~~~~~~----~~~v~~l~~spdg~~l~~----~~---------------g~i~lwd~~~~~~~~~~~~h~~~v~~l  205 (612)
                      ++........    ...+..++++|+|++.++    |.               +.|+.||..+++.....  .......+
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            5533222111    134678999999998886    21               46888888777654333  34456889


Q ss_pred             EEeeCCcEEEEEEcC-----CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          206 TFSDNGKYVLSSAVG-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       206 ~~sp~~~~l~s~s~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      +|+|+++.|+.+...     .+.|.+|++...... ....+. .........+.+.     ++|++ .+++.+ .|.+|+
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~l-wv~~~~-gv~~~~  264 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWL-WSSSGT-GVCVFD  264 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCE-EECCSS-EEEEEC
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCE-EEecCC-cEEEEC
Confidence            999999988776532     268999998765311 111111 1111222344454     77774 344444 377776


Q ss_pred             C
Q 007234          281 G  281 (612)
Q Consensus       281 ~  281 (612)
                      .
T Consensus       265 ~  265 (305)
T 3dr2_A          265 S  265 (305)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=1.1e-07  Score=105.10  Aligned_cols=199  Identities=11%  Similarity=0.099  Sum_probs=129.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +..++.++.++.|..+|..+|+.+.++..............    .....   ....   .        +..|++++.+|
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~---~~a~---~--------~~~v~v~~~dg  138 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC----DVVNR---GVAL---W--------KGKVYVGAWDG  138 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS----CSCCC---CCEE---E--------TTEEEEECTTS
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc----cCCCC---CceE---E--------CCEEEEEcCCC
Confidence            44566777789999999999999998864332110000000    00000   0000   0        66789999999


Q ss_pred             cEEEEEcCCCeEEEEeccCCC----CCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCCCC-----
Q 007234           97 DVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG-----  161 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~-----  161 (612)
                      .|..+|..+|+.++++.....    ..+.+--.- .+..++.++.      ++.|+.+|..+|+.+-.+......     
T Consensus       139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence            999999999999988753201    112211111 2345565553      799999999999998877643211     


Q ss_pred             ---------------------------eeEEEECCCCCEEEEeC--C-------------------eEEEEEcCCCeeEE
Q 007234          162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ  193 (612)
Q Consensus       162 ---------------------------v~~l~~spdg~~l~~~~--g-------------------~i~lwd~~~~~~~~  193 (612)
                                                 ...++++|++..++.+.  +                   .|..+|.++|+.+.
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W  297 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW  297 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence                                       13578889888888776  2                   49999999999987


Q ss_pred             EEec--CC-------CCEEEEEEeeCC---cEEEEEEcCCCeEEEEEcCCCccc
Q 007234          194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       194 ~~~~--h~-------~~v~~l~~sp~~---~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .++.  |.       ....-+....+|   ..++.++ .+|.++++|..+++..
T Consensus       298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence            7753  21       112223444577   5666665 7999999999998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=1.5e-10  Score=118.46  Aligned_cols=185  Identities=14%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-Cee-
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS-  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v~-  163 (612)
                      +..+++++.+|.|+.||..+|+.++++..   +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+. 
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            67899999999999999999999988743   4555555667777788888999999999999988766543211 110 


Q ss_pred             EEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       164 ~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      +..+. ++..+++++  +.++.||.++|+.+.++..+.    ...++|++..+++++ .|+.|..||..+++..-   .+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W---~~  156 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELRW---NA  156 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCCC---EE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEEE---eE
Confidence            11111 234555554  899999999999888776554    234567788888876 68999999999987541   11


Q ss_pred             eecCCceeEEeEEecCCccCCCC---cEEEEEecCCcEEEEECCCcceecccC
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      ....    .....+.     ++.   ..+++++.||.|+.||..+|+.+....
T Consensus       157 ~~~~----~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          157 TYFD----YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEE----ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             eccc----ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            1110    0111111     321   457778999999999999998876443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.01  E-value=4.4e-09  Score=106.87  Aligned_cols=165  Identities=12%  Similarity=0.119  Sum_probs=115.1

Q ss_pred             CcEEEEEECCCcEEEEEcCCCe---------EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                      ..++++|+.+ .+.+|++...+         ........+.. |+.++|  ++++|+++ .++.|++||+.+........
T Consensus        49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~  123 (388)
T 1xip_A           49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT  123 (388)
T ss_dssp             TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE
T ss_pred             CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc
Confidence            6678888887 45559875433         11101123566 999999  88999998 88999999998877666677


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      .+..++.++.+.+.. ++++.. |.|.+||+++++...    +...|++++|+|+|  ++.+. .||.+++|+.......
T Consensus       124 ~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~dg~i~~~~~~~~~~~  195 (388)
T 1xip_A          124 SFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KDRSFQSFAWRNGEME  195 (388)
T ss_dssp             ECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TTSCEEEEEEETTEEE
T ss_pred             eeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cCCcEEEEcCCCcccc
Confidence            777888888887653 333334 999999999887643    44689999999999  45565 7999999988776521


Q ss_pred             cceeeEee------c---CCceeEEeEEecCCccCCCCcEEEEEe
Q 007234          236 SASCVLAM------E---HPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       236 ~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~t~s  271 (612)
                      .   ...+      .   .+...+..+.|.     +++.++++-+
T Consensus       196 ~---k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y~  232 (388)
T 1xip_A          196 K---QFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVFG  232 (388)
T ss_dssp             E---EEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEEE
T ss_pred             c---cceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEEc
Confidence            0   1112      1   123455566666     7777777643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.97  E-value=1.7e-07  Score=95.87  Aligned_cols=225  Identities=16%  Similarity=0.118  Sum_probs=144.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECC
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~   95 (612)
                      ++..+..++.++.|..+|..+|+.+..+.......     +.+           .+    .         +..+++++.+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-----~~p-----------~~----~---------~~~v~v~~~~  152 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL-----SRP-----------VV----S---------DGLVLIHTSN  152 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC-----SCC-----------EE----E---------TTEEEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE-----cCC-----------EE----E---------CCEEEEEcCC
Confidence            45677788889999999999999887765322110     000           00    0         5578889999


Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCe------EEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC----ee--
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG----IS--  163 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V------~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~----v~--  163 (612)
                      |.|..+|..+|+.+++....  ..+      ......  +..++.++.++.+..+|..+|+.+.........    +.  
T Consensus       153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  228 (376)
T 3q7m_A          153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL  228 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECC--C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred             CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence            99999999999998877432  111      122222  456888888999999999999988776532110    00  


Q ss_pred             -EEEECC--CCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          164 -CMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       164 -~l~~sp--dg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                       .+...|  .+..+++++  +.+..+|.++++.+.....  .....+..  ++..++.++ .++.+..+|..+++..   
T Consensus       229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~tG~~~---  300 (376)
T 3q7m_A          229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDGGVTL---  300 (376)
T ss_dssp             -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTTCCEE---
T ss_pred             cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCCCcEE---
Confidence             011111  233444444  8999999999988766542  33444443  344566666 6889999999988743   


Q ss_pred             eeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                        .... ...........       .+..|++++.+|.|+.+|..+++.+...
T Consensus       301 --w~~~~~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          301 --WTQSDLLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             --EEECTTTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             --EeecccCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence              2222 11111111111       2367888999999999999999876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=6.6e-08  Score=106.71  Aligned_cols=241  Identities=20%  Similarity=0.267  Sum_probs=153.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~--   94 (612)
                      +..++.++.|+.|..+|..+|+.+..+............+.+           .+    .         +..++++..  
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P-----------~v----~---------~~~v~vg~~~~  172 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP-----------RV----V---------KGKVIIGNGGA  172 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC-----------EE----E---------TTEEEECCBCT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC-----------EE----E---------CCEEEEeCCCC
Confidence            557778888999999999999999887642111000000000           00    0         345666654  


Q ss_pred             ----CCcEEEEEcCCCeEEEEeccC--CC----------------------------CCeEEEEEecCCCEEEEEecCC-
Q 007234           95 ----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG-  139 (612)
Q Consensus        95 ----~g~I~vwd~~~~~~~~~~~~~--h~----------------------------~~V~~l~~sp~~~~l~s~s~dg-  139 (612)
                          +|.|..+|..+|+.++++...  ..                            .....+++.|++..++.++.++ 
T Consensus       173 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~  252 (668)
T 1kv9_A          173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS  252 (668)
T ss_dssp             TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             CcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence                478999999999999887421  10                            1112468888888888887766 


Q ss_pred             ------------------cEEEEECCCCceeEEEecCC---------CCeeEEEECCCCC---EEEEeC--CeEEEEEcC
Q 007234          140 ------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKTFNCS  187 (612)
Q Consensus       140 ------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~spdg~---~l~~~~--g~i~lwd~~  187 (612)
                                        .|..+|..+|+.+-.++...         .+.....+..+|+   .++.++  |.++++|..
T Consensus       253 ~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~  332 (668)
T 1kv9_A          253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT  332 (668)
T ss_dssp             SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred             ccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC
Confidence                              39999999999988876521         2222233334675   566666  899999999


Q ss_pred             CCeeEEEEecCCC------------CE------------------------EEEEEeeCCcEEEEEE-------------
Q 007234          188 DHKKMQKFSGHPG------------AV------------------------RFMTFSDNGKYVLSSA-------------  218 (612)
Q Consensus       188 ~~~~~~~~~~h~~------------~v------------------------~~l~~sp~~~~l~s~s-------------  218 (612)
                      +|+.+...+-...            ++                        ..++++|+...++...             
T Consensus       333 tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~  412 (668)
T 1kv9_A          333 NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD  412 (668)
T ss_dssp             TCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred             CCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence            9998754432110            00                        1257777766555421             


Q ss_pred             ----------------------cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcE
Q 007234          219 ----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (612)
Q Consensus       219 ----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i  276 (612)
                                            ..++.|..||+.+++..     ............ ...     ..+.++++++.||.+
T Consensus       413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~~-~~~-----t~gg~vf~g~~dg~l  481 (668)
T 1kv9_A          413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGG-TLS-----TAGNLVFQGTAAGQM  481 (668)
T ss_dssp             CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCC-EEE-----ETTTEEEEECTTSEE
T ss_pred             cccccccccCccccccCCCCCCCccceEEEEeCCCCcEE-----EEccCCCCCcCc-eeE-----eCCCEEEEECCcccc
Confidence                                  12478999999998754     222222211111 111     356788889999999


Q ss_pred             EEEECCCcceecccCC
Q 007234          277 YIWYGQNIEELRNTKA  292 (612)
Q Consensus       277 ~iwd~~~~~~~~~~~~  292 (612)
                      +.||.++++.+...+.
T Consensus       482 ~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          482 HAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEETTTCCEEEEEEC
T ss_pred             hhhhhhcChhheEecC
Confidence            9999999998865543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=3.5e-07  Score=96.52  Aligned_cols=251  Identities=8%  Similarity=0.033  Sum_probs=160.0

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEeeccCCccc-ccccc---cccc--------------ccc--c-ccceeEEEeeeccc
Q 007234           20 FAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYG---NRLE--------------REH--L-SVDYTCMKWLSVDR   78 (612)
Q Consensus        20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~s---~~~~--------------~~~--~-~~~~~~~~w~~~~~   78 (612)
                      |.||+..|.++|+-+-+++.+..+........ .--|.   ...+              .|.  . -.+.........+.
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            55788899999999999999988754332110 00000   0000              010  0 00001111111010


Q ss_pred             ccccccCCcEEEEEECCCc-EEEEEcCCCeEEEEeccCCCCCeEEEEE-e-cCCCEEEEEe------------------c
Q 007234           79 KKKRKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------A  137 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~s~s------------------~  137 (612)
                          +..++++++...++. |.+.|+.+.++...+.-.......++++ + |+++++++++                  .
T Consensus        98 ----~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           98 ----KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             ----EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             ----CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence                111667777666554 9999999999876332234456889998 5 9999998884                  3


Q ss_pred             CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-C-------------------------------------
Q 007234          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G-------------------------------------  179 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g-------------------------------------  179 (612)
                      ++.+.++|..+.+...++.... ....++++|||+++++.+ +                                     
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4689999999999888877544 457788999999998876 2                                     


Q ss_pred             --eEEEEEcCC--Cee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc------cc-ceeeEeecCCc
Q 007234          180 --QLKTFNCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QS-ASCVLAMEHPA  247 (612)
Q Consensus       180 --~i~lwd~~~--~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~------~~-~~~~~~~~~~~  247 (612)
                        .|.+.|.++  ++. +..++.- ....++.++|||+++++++..+.+|.++|+.+.+.      .. ........ ..
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG  330 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LG  330 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CC
T ss_pred             ECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CC
Confidence              266666666  444 4455432 23467899999999999887889999999986531      00 01122222 22


Q ss_pred             eeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234          248 VFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN  283 (612)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~  283 (612)
                      .-.....|+     ++| ++.+. -.|++|.+||+.+
T Consensus       331 ~gP~h~aF~-----~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          331 LGPLHTAFD-----GRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SCEEEEEEC-----TTS-EEEEEETTTTEEEEEEHHH
T ss_pred             CCcceEEEC-----CCC-eEEEEEecCCcEEEEEhhH
Confidence            234456676     999 55544 5599999999876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=2.6e-07  Score=94.14  Aligned_cols=191  Identities=12%  Similarity=0.062  Sum_probs=131.4

Q ss_pred             CcEEEEEECCCcEEEEEcCCC----eEEEEec------cCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG  149 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~----~~~~~~~------~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~  149 (612)
                      ..+++.|..++.|.++|+.+.    +....+.      +.....-..+...|+| .++++..+      |.|.++|..++
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            345556667788999999765    4554441      1011245667888999 77777655      78999999999


Q ss_pred             ceeEEEecCCC---CeeEEEECCCCCEEEEe---------------------CCeEEEEEcCCCeeEEEEecC-C-CCEE
Q 007234          150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR  203 (612)
Q Consensus       150 ~~~~~~~~~~~---~v~~l~~spdg~~l~~~---------------------~g~i~lwd~~~~~~~~~~~~h-~-~~v~  203 (612)
                      +.+.++.....   .-+.+.|+|+++.+++.                     +++|.+||+.+++.+.++.-- . ....
T Consensus       175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~  254 (462)
T 2ece_A          175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL  254 (462)
T ss_dssp             CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred             eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence            99999874322   23458889999999988                     379999999999888888642 1 2344


Q ss_pred             EEEE--eeCCcEEEEEEc-----CCCeEEEEEcCCCccccceeeEeecCC----------------ceeEEeEEecCCcc
Q 007234          204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV  260 (612)
Q Consensus       204 ~l~~--sp~~~~l~s~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  260 (612)
                      .+.|  +|++++++.++.     .+++|.+|..+.+... ...+..+...                ......+.++    
T Consensus       255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS----  329 (462)
T 2ece_A          255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS----  329 (462)
T ss_dssp             EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred             eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence            5656  999999988876     6778888777654321 0111101100                1223444555    


Q ss_pred             CCCCcEEEEEec-CCcEEEEECCC
Q 007234          261 DDAGLYVLAISE-TGVCYIWYGQN  283 (612)
Q Consensus       261 ~~~~~~l~t~s~-dg~i~iwd~~~  283 (612)
                       +||++|.++.. .+.|.+||+..
T Consensus       330 -~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          330 -LDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             -TTSCEEEEEETTTTEEEEEECSS
T ss_pred             -CCCCEEEEEeCCCCEEEEEEecC
Confidence             99999999876 67999999853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.89  E-value=5.9e-08  Score=98.26  Aligned_cols=230  Identities=9%  Similarity=-0.064  Sum_probs=139.7

Q ss_pred             EEEEEeCCC----cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE-
Q 007234           19 YFAICSGDA----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-   93 (612)
Q Consensus        19 ~las~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs-   93 (612)
                      .+++-..++    +|.++|..+++.+.++.....+  .+.++++                           ++.++++. 
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spD---------------------------g~~lyVan~   84 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHS---------------------------GSDFALAST   84 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTT---------------------------SSCEEEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCC---------------------------CCEEEEEcc
Confidence            334444455    8889999999999998754433  4555555                           66677776 


Q ss_pred             ---------CCCcEEEEEcCCCeEEEEeccC--C----CCCeEEEEEecCCCEEEEEec--CCcEEE--EECCCCceeEE
Q 007234           94 ---------GGGDVLALAVSAGQLKWRLSDC--H----PGGVSAISFATHGSCIYSAGA--DGMVCE--IDPLTGSLLGK  154 (612)
Q Consensus        94 ---------~~g~I~vwd~~~~~~~~~~~~~--h----~~~V~~l~~sp~~~~l~s~s~--dg~v~i--wd~~~~~~~~~  154 (612)
                               .++.|.+||+.+++.+.++.-+  .    ......+.|+|||++++++..  +..|.+  +|..+   +..
T Consensus        85 ~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~  161 (368)
T 1mda_H           85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL  161 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred             cccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence                     3577999999999998887422  0    124568999999999999874  467888  88865   333


Q ss_pred             EecCCC-------CeeEEEE-------------------------------------CCCCCEEEEeC-CeEEEEEcCCC
Q 007234          155 FRASTK-------GISCMAV-------------------------------------SSDGKMLATAA-GQLKTFNCSDH  189 (612)
Q Consensus       155 ~~~~~~-------~v~~l~~-------------------------------------spdg~~l~~~~-g~i~lwd~~~~  189 (612)
                      +.....       .-.-+++                                     .+++..++..+ +.+.+.|..+.
T Consensus       162 i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~  241 (368)
T 1mda_H          162 TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA  241 (368)
T ss_dssp             EECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSS
T ss_pred             EECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCC
Confidence            321100       0000111                                     12222222222 55666666432


Q ss_pred             --eeEEEEec-------C---CCCEEEEEEeeCCcEEEEEEc---C-----CCeEEEEEcCCCccccceeeEeecCCcee
Q 007234          190 --KKMQKFSG-------H---PGAVRFMTFSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (612)
Q Consensus       190 --~~~~~~~~-------h---~~~v~~l~~sp~~~~l~s~s~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (612)
                        +.+..+.-       +   ......+.|+|+++.++.+..   .     +..+.++|+.+.+...     .+.-.. .
T Consensus       242 ~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-----~i~vg~-~  315 (368)
T 1mda_H          242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-----PISNGH-D  315 (368)
T ss_dssp             CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-----CCEEEE-E
T ss_pred             cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-----EEECCC-C
Confidence              22222210       0   011112689999998887642   1     2356699999987542     221111 2


Q ss_pred             EEeEEecCCccCCCCc-EEEEEe-cCCcEEEEECCCcceecccC
Q 007234          250 MDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       250 ~~~~~~~~~~~~~~~~-~l~t~s-~dg~i~iwd~~~~~~~~~~~  291 (612)
                      ...+.++     +||+ .+++.. .++.|.++|+.+++.++.++
T Consensus       316 p~gi~~s-----~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          316 SDAIIAA-----QDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             ECEEEEC-----CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             cceEEEC-----CCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            4456676     8987 455556 58999999999999887655

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.88  E-value=5.2e-07  Score=97.50  Aligned_cols=245  Identities=14%  Similarity=0.116  Sum_probs=151.5

Q ss_pred             EEcCCCCE----EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        12 ~fspdg~~----las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      +++|++..    ++.++.|+.|..+|..+|+.+...............+.+           .+    .         +.
T Consensus       112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP-----------~v----~---------~g  167 (599)
T 1w6s_A          112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP-----------YV----V---------KD  167 (599)
T ss_dssp             EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC-----------EE----E---------TT
T ss_pred             EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC-----------EE----E---------CC
Confidence            66555545    778888999999999999998876532210000000000           00    0         34


Q ss_pred             EEEEEEC------CCcEEEEEcCCCeEEEEeccCCCC------------------------------------Ce-EEEE
Q 007234           88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS  124 (612)
Q Consensus        88 ~l~~gs~------~g~I~vwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~  124 (612)
                      .+++++.      +|.|+.+|..+|+.++++......                                    .+ ..++
T Consensus       168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a  247 (599)
T 1w6s_A          168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA  247 (599)
T ss_dssp             EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred             EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence            5666653      789999999999999887432111                                    01 1356


Q ss_pred             EecCCCEEEEEecC----------------CcEEEEECCCCceeEEEecCCC---------CeeEEEEC-CCC---CEEE
Q 007234          125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDG---KMLA  175 (612)
Q Consensus       125 ~sp~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~s-pdg---~~l~  175 (612)
                      +.++...++.+..+                +.|..+|..+|+.+-.++....         ...-+... .+|   +.++
T Consensus       248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~  327 (599)
T 1w6s_A          248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT  327 (599)
T ss_dssp             EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred             EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence            66777788877655                3899999999999887765322         11112222 567   4566


Q ss_pred             EeC--CeEEEEEcCCCeeEEEEecCC-------------CCE--------------------------EEEEEeeCCcEE
Q 007234          176 TAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYV  214 (612)
Q Consensus       176 ~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l  214 (612)
                      .++  |.++++|.++|+.+....-..             .++                          ..++++|+...+
T Consensus       328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~  407 (599)
T 1w6s_A          328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF  407 (599)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence            665  899999999999877654211             111                          135667766655


Q ss_pred             EEEEc--------------------------------------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec
Q 007234          215 LSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID  256 (612)
Q Consensus       215 ~s~s~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (612)
                      ++...                                      .++.+..||+.+++..     ............... 
T Consensus       408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~~~-  481 (599)
T 1w6s_A          408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGTMA-  481 (599)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE-
T ss_pred             EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-----eEecCCCCccCcceE-
Confidence            44310                                      2367888888887643     222211111111011 


Q ss_pred             CCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       257 ~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                           ..+..++.++.||.++.||.++|+.+...+
T Consensus       482 -----tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          482 -----TAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             -----ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -----ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence                 245677789999999999999999987654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.86  E-value=2.8e-07  Score=87.20  Aligned_cols=174  Identities=6%  Similarity=0.055  Sum_probs=121.2

Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .|+ ++.++.+.+.+|  .|+++|+++|+.+.++.....     .|         .   ..+...  .        +.+.
T Consensus        49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~F---------g---eGit~~--g--------~~ly  100 (262)
T 3nol_A           49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YF---------G---EGISDW--K--------DKIV  100 (262)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CC---------E---EEEEEE--T--------TEEE
T ss_pred             EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----cc---------e---eEEEEe--C--------CEEE
Confidence            788 677777777766  899999999999988752110     00         0   001110  0        3344


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (612)
                      ++.-.++.+.+||..+.+.+.++..+-    .+..++++++.|+.+..++.|.++|..+.+.+.++....     ..++.
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            444457789999999999998875422    223344678888877778889999999999888876532     23455


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC------------CCCEEEEEEeeCCcEEEEEE
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~s~s  218 (612)
                      +.|. +|++.+..-  +.|.+.|.++++.+..+.-.            ..-.+.|+|+|+++.|+.+|
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            7776 776555443  89999999999998887532            12458899999988777776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.85  E-value=5.7e-08  Score=98.40  Aligned_cols=249  Identities=9%  Similarity=-0.088  Sum_probs=146.5

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCceeEEEecCC-------
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAST-------  159 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~-------  159 (612)
                      .|.++|..+++.+.++..+.. +  .+.++||+++++++.          .+++|.+||+.+++.+.++....       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            788999999999988866553 4  799999999999886          37899999999999999987541       


Q ss_pred             CCeeEEEECCCCCEEEEeC----CeEEE--EEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC--
Q 007234          160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~----g~i~l--wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~--  231 (612)
                      .....++++|||++++++.    +.+.+  +|..+   +.++.-. +.   ..+.|+++..+.+.+.|+.+.+.++.+  
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~  196 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence            2457899999999999874    47888  99877   4455321 11   223455543333333688888888876  


Q ss_pred             ---Cccccce-eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc--ee-----------------c
Q 007234          232 ---VKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--EL-----------------R  288 (612)
Q Consensus       232 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~--~~-----------------~  288 (612)
                         ++..... .......  ...   .+      +++..++..+. +.+.+.|..+..  .+                 .
T Consensus       197 ~~~~~v~~~~t~~i~vg~--~P~---~~------~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~  264 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSS--QAA---QA------NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             CCCEECCCCSCTTSCBCS--CCE---EE------TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             ccCCeEEEEeeeeeeCCC--Ccc---cc------ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence               3211000 0011111  111   13      45555555556 888888875421  11                 1


Q ss_pred             ccCCceeEeecccccCCCCcccchhhhcccc-c-ceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEec
Q 007234          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKL-Q-DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM  366 (612)
Q Consensus       289 ~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~-d-~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~  366 (612)
                      ...+..        ++++++    .+..+.. . +.+........+.+-. ......++.... ..+.++|++||+.+.+
T Consensus       265 g~~~v~--------~s~dg~----~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~vv~~i~vg~-~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          265 GFQMVA--------KLKNTD----GIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPISNGH-DSDAIIAAQDGASDNY  330 (368)
T ss_dssp             SSSCEE--------EETTTT----EEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECCEEEE-EECEEEECCSSSCEEE
T ss_pred             cceeeE--------EcCCCC----EEEEEeccccCcccccCCCEEEEECC-CCeEEEEEECCC-CcceEEECCCCCEEEE
Confidence            112221        344444    2222211 1 0000001111233322 223333444333 5788999999986536


Q ss_pred             ccc-ceeeecceeeec
Q 007234          367 SQS-LLKSKRGRYVQN  381 (612)
Q Consensus       367 s~s-~d~~~~~w~~~~  381 (612)
                      +.. .++++.+++...
T Consensus       331 a~~~~~~~VsVID~~t  346 (368)
T 1mda_H          331 ANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEETTTTEEEEEESSS
T ss_pred             EccCCCCeEEEEECCC
Confidence            666 588999998743

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.84  E-value=6.5e-07  Score=96.71  Aligned_cols=240  Identities=15%  Similarity=0.136  Sum_probs=150.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~--   94 (612)
                      +..++.++.|+.|..+|..+|+.+..+............+.+            +.   .         +..+++++.  
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v---~---------~g~v~vg~~~~  170 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FV---A---------KDTVLMGCSGA  170 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EE---E---------TTEEEEECBCG
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC------------EE---E---------CCEEEEEecCC
Confidence            556778888999999999999998877532210000000000            00   0         345666665  


Q ss_pred             ----CCcEEEEEcCCCeEEEEeccCCCC-------------------------------------CeEEEEEecCCCEEE
Q 007234           95 ----GGDVLALAVSAGQLKWRLSDCHPG-------------------------------------GVSAISFATHGSCIY  133 (612)
Q Consensus        95 ----~g~I~vwd~~~~~~~~~~~~~h~~-------------------------------------~V~~l~~sp~~~~l~  133 (612)
                          +|.|..+|..+|+.++++......                                     ....+++.++...++
T Consensus       171 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy  250 (571)
T 2ad6_A          171 ELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY  250 (571)
T ss_dssp             GGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE
T ss_pred             ccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE
Confidence                789999999999999876432110                                     002356777666777


Q ss_pred             EEecC----------------CcEEEEECCCCceeEEEecCC---------CCeeEEEECCCCC---EEEEeC--CeEEE
Q 007234          134 SAGAD----------------GMVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKT  183 (612)
Q Consensus       134 s~s~d----------------g~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~spdg~---~l~~~~--g~i~l  183 (612)
                      .++.+                +.|..+|..+|+.+-.++...         ....-+...++|+   .++.++  |.+++
T Consensus       251 ~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~  330 (571)
T 2ad6_A          251 YGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYT  330 (571)
T ss_dssp             EECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEE
T ss_pred             EECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEE
Confidence            66532                359999999999988776421         1111122234774   556666  89999


Q ss_pred             EEcCCCeeEEEEecCC-------------CCE--------------------------EEEEEeeCCcEEEEEEc-----
Q 007234          184 FNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV-----  219 (612)
Q Consensus       184 wd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l~s~s~-----  219 (612)
                      +|.++++.+..+.-..             .++                          ..++|+|+...++..+.     
T Consensus       331 lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~  410 (571)
T 2ad6_A          331 LNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMD  410 (571)
T ss_dssp             EETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred             EECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccc
Confidence            9999999877664221             111                          23577887776666531     


Q ss_pred             -------------------------------CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEE
Q 007234          220 -------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (612)
Q Consensus       220 -------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (612)
                                                     .++.+..||+.+++..     ...............      ..+..++
T Consensus       411 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~v~  479 (571)
T 2ad6_A          411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLVW  479 (571)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEEE
T ss_pred             ccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-----EEecCCCCccceeEE------ECCCEEE
Confidence                                           2478889998888744     222222111111111      2346677


Q ss_pred             EEecCCcEEEEECCCcceecccC
Q 007234          269 AISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       269 t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      .++.||.|+.||.++++.+..++
T Consensus       480 ~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          480 YATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCCEEEEEe
Confidence            78999999999999999886554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.84  E-value=1.1e-07  Score=105.63  Aligned_cols=186  Identities=13%  Similarity=0.047  Sum_probs=121.1

Q ss_pred             CcEEEEEE-CCC----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCc-------------EEEEECC
Q 007234           86 SSLLVLGT-GGG----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs-~~g----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-------------v~iwd~~  147 (612)
                      +++++.+. .+|    .|++||+.+++.+......  ....+++|+ ||+.|+.++.+..             |++|++.
T Consensus       140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg  216 (693)
T 3iuj_A          140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG  216 (693)
T ss_dssp             SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred             CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence            66666443 334    4999999999876432211  113577899 9999998887743             9999998


Q ss_pred             CCce--eEEEec---CCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCe-eEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          148 TGSL--LGKFRA---STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       148 ~~~~--~~~~~~---~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      ++..  ...+..   +...+.++.|+|||++|+...      +.|+++|+.++. ....+..+....... ++++|..|+
T Consensus       217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~  295 (693)
T 3iuj_A          217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY  295 (693)
T ss_dssp             SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred             CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence            7653  223332   334578899999999886543      489999998763 455666676666555 667666665


Q ss_pred             EEEcCC---CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CC--cEEEEECCCcc
Q 007234          216 SSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIE  285 (612)
Q Consensus       216 s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg--~i~iwd~~~~~  285 (612)
                      ..+..+   +.|..+++.++......  ....+....+   .++     +++++|+.... +|  .|++|++..+.
T Consensus       296 ~~t~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~~~~---~~s-----~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          296 LLTNRDAPNRRLVTVDAANPGPAHWR--DLIPERQQVL---TVH-----SGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCE--EEECCCSSCE---EEE-----EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEECCCCCCCEEEEEeCCCCCccccE--EEecCCCCEE---EEE-----EECCEEEEEEEECCeeEEEEEECCCCe
Confidence            554333   57999999876542111  1223444333   455     77777776655 44  68999987543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=2.9e-07  Score=92.90  Aligned_cols=189  Identities=10%  Similarity=0.100  Sum_probs=117.9

Q ss_pred             eEEEEcCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         9 l~~~fspdg~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..++|+|+|+++++-..     ++.|.+||..+++.+..+........           + ......+...+..      
T Consensus        70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~-----------~-~~~~~~v~vd~~~------  131 (343)
T 2qe8_A           70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITL-----------S-NSFVNDLAVDLIH------  131 (343)
T ss_dssp             EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSC-----------T-TCCCCEEEEETTT------
T ss_pred             eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcc-----------c-ccccceEEEecCC------
Confidence            35599999987766543     57899999999998777653211000           0 0011223333221      


Q ss_pred             cCCcEEEEEE---CCCcEEEEEcCCCeEEEEeccCCC-----------------------------CCeEEEEEecCCCE
Q 007234           84 LGSSLLVLGT---GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGSC  131 (612)
Q Consensus        84 ~~~~~l~~gs---~~g~I~vwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~sp~~~~  131 (612)
                        +..+++..   .++.|.+||+.+++....+ .+|.                             ..+.+++|+|+|+.
T Consensus       132 --g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~  208 (343)
T 2qe8_A          132 --NFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW  208 (343)
T ss_dssp             --TEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred             --CEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence              33334444   5677999999988765433 2221                             23688999999999


Q ss_pred             EEEEecCC-cEEEEECC---CCc-----eeE--EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec-
Q 007234          132 IYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-  197 (612)
Q Consensus       132 l~s~s~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~-  197 (612)
                      |+.+..++ .+..++..   .+.     ...  ...++......++++++|.++++..  +.|.+||.++++....... 
T Consensus       209 ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~  288 (343)
T 2qe8_A          209 LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE  288 (343)
T ss_dssp             EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred             EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence            98887766 55555431   111     000  1112334567799999998888776  8999999866764333322 


Q ss_pred             CCCCEEEEEEeeCCcEEEEEE
Q 007234          198 HPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       198 h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      +-..+.+++|.++++++++.+
T Consensus       289 ~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          289 KLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             GGSCEEEEEECTTSCEEEEEC
T ss_pred             ceecCCeeEECCCCcEEEEeC
Confidence            245688999999988777665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.78  E-value=7.5e-08  Score=96.27  Aligned_cols=222  Identities=16%  Similarity=0.189  Sum_probs=136.8

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      .++.+|. +..++.++.|..|| .+++....+......+..+...                     .       +..+.+
T Consensus        26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~---------------------~-------~g~l~v   75 (330)
T 3hxj_A           26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG---------------------K-------DGTIYF   75 (330)
T ss_dssp             EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET---------------------T-------TTEECC
T ss_pred             eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe---------------------c-------CCcEEE
Confidence            5556665 45566788899999 8888766543211111100000                     0       334566


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg  171 (612)
                      ++.+  |..||. +++.++.+. ..........+.  +..++.++.++.|..+|.. ++....+......+.++...+++
T Consensus        76 ~t~~--l~~~d~-~g~~~~~~~-~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g  148 (330)
T 3hxj_A           76 GSDK--VYAINP-DGTEKWRFD-TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG  148 (330)
T ss_dssp             SSCE--EEEECC-CGGGGGGSC-C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS
T ss_pred             ecCc--EEEECC-CCcEEEEEE-CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC
Confidence            6555  888886 565544332 122222333333  4568888889999999988 87777766655667778888888


Q ss_pred             CEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeE
Q 007234          172 KMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM  250 (612)
Q Consensus       172 ~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  250 (612)
                      .+++... +.|..+|.. ++.+..+......+.++.+.+++..++ ++   +.+..+| .+++..     .........+
T Consensus       149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t---~~l~~~d-~~g~~~-----~~~~~~~~~~  217 (330)
T 3hxj_A          149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS---DKVYAIN-PDGTEK-----WNFYAGYWTV  217 (330)
T ss_dssp             CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES---SSEEEEC-TTSCEE-----EEECCSSCCC
T ss_pred             EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee---CEEEEEC-CCCcEE-----EEEccCCcce
Confidence            8777665 899999998 877777766566677777777887544 32   6788899 555432     2222222333


Q ss_pred             EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      ......     ++| .|..++.++.|..+|. +++.+.
T Consensus       218 ~~~~~~-----~~g-~l~v~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          218 TRPAIS-----EDG-TIYVTSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             SCCEEC-----TTS-CEEEEETTTEEEEECT-TSCEEE
T ss_pred             eceEEC-----CCC-eEEEEcCCCeEEEECC-CCCEeE
Confidence            344443     555 4666777888888874 454443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=6.1e-06  Score=79.77  Aligned_cols=202  Identities=9%  Similarity=-0.040  Sum_probs=124.4

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEEC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDP  146 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~  146 (612)
                      ...+.|.+.+        +.++++-..++.|..+++..+...... ........+++++|++..++.+ ...+.|.++++
T Consensus        38 ~~gi~~d~~~--------~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~  108 (267)
T 1npe_A           38 IIGLAFDCVD--------KVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (267)
T ss_dssp             EEEEEEETTT--------TEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEEEecCC--------CEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence            3456665542        344555556678999999876543222 2223568999999976666555 45678999998


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      ..................++++|++..|+.+.     +.|..+++.... ...+ ...-.....++++|++..|+.+...
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence            64433222332234678999999766555443     478888876432 2223 2333457899999988777777666


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      .+.|.++++......   ...  ...... ..++.      .++..+++...++.|..+|..+++.+..+.
T Consensus       188 ~~~I~~~~~~g~~~~---~~~--~~~~~P-~gi~~------d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          188 THRAECLNPAQPGRR---KVL--EGLQYP-FAVTS------YGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TTEEEEEETTEEEEE---EEE--ECCCSE-EEEEE------ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEecCCCceE---EEe--cCCCCc-eEEEE------eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            789999998764322   111  111111 22333      233444444456899999999888765543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.75  E-value=1.2e-06  Score=87.33  Aligned_cols=216  Identities=19%  Similarity=0.242  Sum_probs=139.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +..+..++.++.|..+|.. |+....+......+.......                            +..+.+|+.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~----------------------------~g~l~vgt~~~  157 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE----------------------------DGTIYVGSNDN  157 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT----------------------------TSCEEEECTTS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC----------------------------CCEEEEEcCCC
Confidence            3345566667788888877 766655543221111111100                            33477888889


Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT  176 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~  176 (612)
                      .|..||.. ++..+.+. .....+.++.+.+++. ++.++  +.|..+| .+++....+......+.++...++|.+.+.
T Consensus       158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~  231 (330)
T 3hxj_A          158 YLYAINPD-GTEKWRFK-TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT  231 (330)
T ss_dssp             EEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred             EEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence            99999999 87776663 2345677777777776 55555  8899999 788777777666667889999999888777


Q ss_pred             eC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234          177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (612)
Q Consensus       177 ~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (612)
                      .. +.+..+|. +++.+..+......+..+.+.+++. +..++ .++.+..+|. +++..     .........+.....
T Consensus       232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~  302 (330)
T 3hxj_A          232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGS-YDGHLYAINP-DGTEK-----WNFETGSWIIATPVI  302 (330)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTCEEEEECT-TSCEE-----EEEECSSCCCSCCEE
T ss_pred             cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEec-CCCCEEEECC-CCcEE-----EEEEcCCccccceEE
Confidence            65 88888884 5666666655444445566666775 44454 5778999985 44422     222222333333444


Q ss_pred             cCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          256 DNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       256 ~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      .     ++|. |..++.+|.+++...+
T Consensus       303 d-----~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          303 D-----ENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             C-----TTCC-EEEECTTSCEEEEEC-
T ss_pred             c-----CCCE-EEEEcCCCeEEEEecc
Confidence            3     5555 6778999999988654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.72  E-value=3.6e-06  Score=78.92  Aligned_cols=174  Identities=10%  Similarity=0.124  Sum_probs=120.9

Q ss_pred             EEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~~las~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .|++ +.++.+.+.+  ..|+++|+.+|+.+..+.....              ....   .+...          ++.+.
T Consensus        27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------~fge---Gi~~~----------~~~ly   78 (243)
T 3mbr_X           27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------YFGA---GIVAW----------RDRLI   78 (243)
T ss_dssp             EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------CCEE---EEEEE----------TTEEE
T ss_pred             EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------ccee---EEEEe----------CCEEE
Confidence            7776 5666666665  4899999999999987752211              0000   11110          04455


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeE
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (612)
                      ++.-.++.+.+||..+.+.+.++..+.  .=.++  .++++.|+.+..++.|.++|..+.+.+.++....     ..++.
T Consensus        79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~--~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           79 QLTWRNHEGFVYDLATLTPRARFRYPG--EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEECSS--CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECCcCcEEEEEeCCC--CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            555567889999999999998885432  22344  4577778877778999999999999888876532     24556


Q ss_pred             EEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-------------CCCEEEEEEeeCCcEEEEEE
Q 007234          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       165 l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~s~s  218 (612)
                      +.+. +|+..+..-  ..|.+.|.++++.+..+.-.             ..-.+.|+++|+++.|+.+|
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6766 676665543  79999999999998887521             12467899999887777765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.72  E-value=5.3e-06  Score=91.41  Aligned_cols=198  Identities=14%  Similarity=0.186  Sum_probs=127.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +..+..++.++.|..+|..+|+.+..+...............    ......  ..+            +..+++++.+|
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~~--~~~------------~~~v~v~~~dg  127 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD----AVNRGV--ALW------------GDKVYVGTLDG  127 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCCCC--EEE------------BTEEEEECTTS
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCcccccccccc----CCccce--EEE------------CCEEEEEcCCC
Confidence            446677778899999999999999888643321110000000    000000  001            56788999999


Q ss_pred             cEEEEEcCCCeEEEEeccCCC---CCeEE-EEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCCC------
Q 007234           97 DVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTK------  160 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~---~~V~~-l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~------  160 (612)
                      .|..+|..+|+.++++.....   ..+.+ ..+ .++ .++.++.      +|.|..+|..+|+.+-.+.....      
T Consensus       128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  205 (668)
T 1kv9_A          128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY  205 (668)
T ss_dssp             EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence            999999999999988754221   11111 111 134 5555543      58999999999999888753110      


Q ss_pred             -------------------------CeeEEEECCCCCEEEEeC--C-------------------eEEEEEcCCCeeEEE
Q 007234          161 -------------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK  194 (612)
Q Consensus       161 -------------------------~v~~l~~spdg~~l~~~~--g-------------------~i~lwd~~~~~~~~~  194 (612)
                                               ....++++|++.+++.+.  +                   .|..+|.++|+.+..
T Consensus       206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~  285 (668)
T 1kv9_A          206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH  285 (668)
T ss_dssp             SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred             cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence                                     112468888888887776  3                   399999999999887


Q ss_pred             Eec--CC-------CCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       195 ~~~--h~-------~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ++.  |.       .+.....+..+|+   .++.++ .+|.++++|..+++..
T Consensus       286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             eecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence            764  22       3333334445775   466655 7999999999998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=2.4e-06  Score=92.40  Aligned_cols=246  Identities=17%  Similarity=0.128  Sum_probs=147.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc-EEEEEEC-
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG-   94 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~gs~-   94 (612)
                      +..++.++.|+.|..+|..+|+.+..+............+.+            +...  +..     +++ .+++++. 
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP------------~v~~--~~~-----~G~~~v~vg~~~  177 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP------------TIVK--DGK-----TGKVLLIHGSSG  177 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC------------EEEE--CTT-----TCCEEEEECCBC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC------------EEeC--CCc-----CCcEEEEEeccc
Confidence            556777888999999999999998877532211000000000            0000  000     022 5666653 


Q ss_pred             -----CCcEEEEEcCCCeEEEEeccCCC----------------------------------------CCeEEEEEecCC
Q 007234           95 -----GGDVLALAVSAGQLKWRLSDCHP----------------------------------------GGVSAISFATHG  129 (612)
Q Consensus        95 -----~g~I~vwd~~~~~~~~~~~~~h~----------------------------------------~~V~~l~~sp~~  129 (612)
                           +|.|..+|..+|+.+++......                                        ..-..+++.|+.
T Consensus       178 ~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~  257 (582)
T 1flg_A          178 DEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET  257 (582)
T ss_dssp             GGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred             cccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence                 78899999999999886532100                                        000135667777


Q ss_pred             CEEEEEec--------------------C----CcEEEEECCCCceeEEEecCCC---------CeeEEEEC-CCCC---
Q 007234          130 SCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDGK---  172 (612)
Q Consensus       130 ~~l~s~s~--------------------d----g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~s-pdg~---  172 (612)
                      ..++.+..                    |    +.|..+|..+|+.+-.++....         ...-+... .+|+   
T Consensus       258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~  337 (582)
T 1flg_A          258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVK  337 (582)
T ss_dssp             TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEE
T ss_pred             CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEE
Confidence            77776653                    2    5899999999999888764211         11111221 4674   


Q ss_pred             EEEEeC--CeEEEEEcCCCeeEEEEecCC-------------CCE--------------------------------EEE
Q 007234          173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------------RFM  205 (612)
Q Consensus       173 ~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~l  205 (612)
                      .++.++  |.++++|.++|+.+..+....             .++                                ..+
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~  417 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM  417 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred             EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence            666676  899999999999887664331             000                                123


Q ss_pred             EEeeCCcEEEEEEc--------------------------------CCCeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234          206 TFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (612)
Q Consensus       206 ~~sp~~~~l~s~s~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (612)
                      +++|+...+++...                                .++.|..||+.+++..     .............
T Consensus       418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~  492 (582)
T 1flg_A          418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-----WEHKEHLPLWAGV  492 (582)
T ss_dssp             EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-----EEEEESSCCCSCC
T ss_pred             eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-----EEecCCCCCcccc
Confidence            55665444444321                                2578899999888744     2222211111111


Q ss_pred             EecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCC
Q 007234          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (612)
Q Consensus       254 ~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~  292 (612)
                      ..      ..+..++.++.||.++.||.++|+.+..++.
T Consensus       493 ~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          493 LA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EE------ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eE------eCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            11      2356778899999999999999999876554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.70  E-value=6.2e-06  Score=82.22  Aligned_cols=249  Identities=13%  Similarity=0.086  Sum_probs=137.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCcccccccccc---ccccccccceeEEEeeecccccccccCCc
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR---LEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      ++++++|+++.++..++.|..||..+++.. .+..... .........   ............+.+.+.         +.
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g   92 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASP-YWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NN   92 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCT-TCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TT
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccc-cccccccccccchhccccCCCCceEEEcCC---------CC
Confidence            489999997778888899999998766543 2321100 000000000   000000112234444331         23


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEe--ccC-CCCCeEEEEEec-CCCEEEEEec-----------------CCcEEEEEC
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDP  146 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~--~~~-h~~~V~~l~~sp-~~~~l~s~s~-----------------dg~v~iwd~  146 (612)
                      .|+++...+.|..+|..++......  ..+ ......++++.+ +|+..++-..                 ++.|..||.
T Consensus        93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            4666666666888988766432111  111 123578899999 8976665432                 367999998


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe--eEEEEecCCCCEEEEEEeeCCcEEEEEEcC-
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-  220 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~-  220 (612)
                      .+++....... ......++++|+|+.|+++.   +.|+.|++....  ....+....+ ...+++.++|++.++.. . 
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~-~~  249 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS-EE  249 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE-EE
T ss_pred             CCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec-Cc
Confidence            77764333222 23457899999999776664   799999987521  1122221223 68899999998666653 2 


Q ss_pred             ---------CCeEEEEEcCCCccccceeeEeecCC--ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          221 ---------ERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       221 ---------d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                               .+.|..+|.. ++..   ..+.....  ...+..+.+      .++++.++....+.|..+++..
T Consensus       250 ~~~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEeccc
Confidence                     3557777754 3322   11221111  122333333      3556555555678898888653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.68  E-value=1.8e-06  Score=81.72  Aligned_cols=173  Identities=9%  Similarity=0.065  Sum_probs=120.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      .|+ ++.++.+.+.+|.|+++|+++|+.+..+ -. ...    |.            ..+..  .        ++.+.++
T Consensus        61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~----Fg------------eGit~--~--------g~~Ly~l  111 (268)
T 3nok_A           61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNI----FA------------EGLAS--D--------GERLYQL  111 (268)
T ss_dssp             EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTC----CE------------EEEEE--C--------SSCEEEE
T ss_pred             EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCc----ce------------eEEEE--e--------CCEEEEE
Confidence            676 3567777888899999999999988766 21 110    00            00111  0        0445555


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-----CCeeEEE
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISCMA  166 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~  166 (612)
                      .-.++.+.+||..+.+.+.++...  ..-++++  ++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.
T Consensus       112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            556788999999999999887532  2223444  578888888889999999999999888876532     2456677


Q ss_pred             ECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecC-------------CCCEEEEEEeeCCcEEEEEE
Q 007234          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       167 ~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~s~s  218 (612)
                      |. +|++.+..-  +.|.+.|.++++.+..+.-.             ..-.+.|++.|+++.|+.+|
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            77 776555543  79999999999998877521             13468899999877666655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.65  E-value=1.1e-05  Score=77.29  Aligned_cols=182  Identities=13%  Similarity=0.060  Sum_probs=123.0

Q ss_pred             EEEEEEC---CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCceeEEEecC-CCCe
Q 007234           88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-TKGI  162 (612)
Q Consensus        88 ~l~~gs~---~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-~~~v  162 (612)
                      .++.++.   ++.|.++|+.+++.+..+.-+......++++.  ++.|+.+. .++.+.++|..+.+.+.++... ..  
T Consensus        33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--  108 (266)
T 2iwa_A           33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--  108 (266)
T ss_dssp             EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--
T ss_pred             eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--
Confidence            4555543   46799999999999877643222233455554  55665554 6789999999999999998754 22  


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC-----CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                       ...+++||+.++++.  +.|.++|..+.+.+..+.-..     ..++.+.|. +|. +++....++.|.+.|..+++..
T Consensus       109 -g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          109 -GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             -CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE
T ss_pred             -eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE
Confidence             234556787777666  899999999998888775221     236788888 675 4444445789999999998754


Q ss_pred             cceeeEeec-----------CCceeEEeEEecCCccCCCCcEEEE-EecCCcEEEEECCCc
Q 007234          236 SASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNI  284 (612)
Q Consensus       236 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~t-~s~dg~i~iwd~~~~  284 (612)
                      .   ...+.           ........++++     |+++.+++ +...+.+...++...
T Consensus       186 ~---~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          186 G---WILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             E---EEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             E---EEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence            1   22221           112356778887     88765555 456788888886554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.63  E-value=4.2e-05  Score=73.76  Aligned_cols=195  Identities=8%  Similarity=-0.076  Sum_probs=119.2

Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++|+|++..|..+. ..+.|.+++..++.....+....                  .....+++.+..        +.+
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------~~p~~ia~d~~~--------~~l   93 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------------------GSPEGIALDHLG--------RTI   93 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC------------------CCEEEEEEETTT--------TEE
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC------------------CCccEEEEEecC--------CeE
Confidence            458999766555544 47899999987654332221100                  122334443321        334


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEe-cCCCCeeE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC  164 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~  164 (612)
                      .++-..++.|.++++...... .+.........+++++|++..|+.+..   .+.|..+++.. .....+. ........
T Consensus        94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG  171 (267)
T ss_dssp             EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred             EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence            444445677999998754332 222222246789999997666666654   36888888753 3333332 23346789


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ++++|++..|+.+.   +.|..+|.........+.+- .....+++.  +..++.+....+.|.++|..+++..
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence            99999887776665   79999999765443334432 334566653  4556666556789999999887643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.58  E-value=3.8e-05  Score=82.84  Aligned_cols=197  Identities=13%  Similarity=0.102  Sum_probs=121.4

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234           17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (612)
Q Consensus        17 g~~las~s~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~   94 (612)
                      +..+..++. ++.|.-+|. .+|+.+.++........   .... .+.......  ..+            +..+++++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~---~~~~-~~~~~~~~~--~~~------------~~~v~v~~~  123 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST---KAVM-CCDVVDRGL--AYG------------AGQIVKKQA  123 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---GGGC-TTCSCCCCC--EEE------------TTEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc---cccc-ccccccccc--EEE------------CCEEEEEeC
Confidence            345666666 889999999 99999988753321100   0000 000000000  000            567889999


Q ss_pred             CCcEEEEEcCCCeEEEEeccCC-C--CCeEE-EEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCCCC---
Q 007234           95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG---  161 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~~h-~--~~V~~-l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~---  161 (612)
                      +|.|..+|..+|+.+++..... .  ..+.+ .... ++ .++.++.      ++.|..+|..+|+.+-++......   
T Consensus       124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~  201 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV  201 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence            9999999999999998764221 0  01211 1111 34 5666654      799999999999988877643211   


Q ss_pred             -----------------------------------eeEEEECCCCCEEEEeCC------------------eEEEEEcCC
Q 007234          162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD  188 (612)
Q Consensus       162 -----------------------------------v~~l~~spdg~~l~~~~g------------------~i~lwd~~~  188 (612)
                                                         ...+++.++...++.+.+                  .|..+|.++
T Consensus       202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t  281 (571)
T 2ad6_A          202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT  281 (571)
T ss_dssp             TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred             ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence                                               023566776666665542                  599999999


Q ss_pred             CeeEEEEecC----------CCCEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          189 HKKMQKFSGH----------PGAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       189 ~~~~~~~~~h----------~~~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ++.+..++..          ..++. +...++|+   .++.++ .+|.+.++|..+++..
T Consensus       282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI  339 (571)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence            9988777532          12222 22335775   445554 7899999999988754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.55  E-value=1.6e-05  Score=74.47  Aligned_cols=170  Identities=12%  Similarity=0.003  Sum_probs=108.3

Q ss_pred             EEEEeccCCCCCeEEEEEecCCCEEEEEecC--CcEEEEECCCCceeEEEecCCCC-eeEEEECCCCCEEEEeC---CeE
Q 007234          108 LKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRASTKG-ISCMAVSSDGKMLATAA---GQL  181 (612)
Q Consensus       108 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~~~~---g~i  181 (612)
                      .+.++......-..++.|++ +.++.+.+.+  ..|+.+|+.+++.+..+...... -..+++  ++..|....   +.+
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEE
Confidence            34444322335578999986 5555666665  48999999999999988754332 133444  355555544   899


Q ss_pred             EEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccC
Q 007234          182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD  261 (612)
Q Consensus       182 ~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (612)
                      .+||.++.+.+.+++....   ...+++++..|+.+. .++.|.++|..+.+......+.....+...+.-+.+      
T Consensus        88 ~v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~------  157 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW------  157 (243)
T ss_dssp             EEEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------
T ss_pred             EEEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE------
Confidence            9999999999999974332   234457777777765 688999999988765421111110011112233333      


Q ss_pred             CCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          262 DAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       262 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      .+|+..+..-.+..|.+.|..+++.+..+
T Consensus       158 ~~G~lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          158 VNGELLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             ETTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             eCCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence            35665544446789999999999886543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.54  E-value=0.00018  Score=71.29  Aligned_cols=230  Identities=7%  Similarity=-0.054  Sum_probs=135.8

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEE
Q 007234           20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVL   99 (612)
Q Consensus        20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~   99 (612)
                      |+.+. .+.|+..|+.+.+....+..                   ......+.|.+.+        +.++++-..++.|.
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~~-------------------~~~p~g~~~d~~~--------~~ly~~D~~~~~I~   55 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMIC   55 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEECS-------------------CSSEEEEEEETTT--------TEEEEEETTTTEEE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhcC-------------------CCceEEEEEEeCC--------CEEEEEECCCCcEE
Confidence            43333 35688999987765544321                   1123455665442        34445555567799


Q ss_pred             EEEcCC---CeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEE
Q 007234          100 ALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA  175 (612)
Q Consensus       100 vwd~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  175 (612)
                      .+++..   +.....+....-....++++.+.+..|+ +-...+.|.++|+........+.........++++|.+..|+
T Consensus        56 ~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           56 STQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             EEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             EEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEE
Confidence            999876   1222222222224568999987555554 445678999999865443333443445779999999766655


Q ss_pred             EeC----CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeE
Q 007234          176 TAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM  250 (612)
Q Consensus       176 ~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  250 (612)
                      .+.    +.|..+++... ....+ ...-.....++++|++..|+.+....+.|..+|++.....   .+..........
T Consensus       136 ~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~P  211 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHP  211 (316)
T ss_dssp             EEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSE
T ss_pred             EEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCCc
Confidence            543    57888887543 33333 2334567899999988777777666779999998754322   222211111122


Q ss_pred             EeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      ..+++.      ++...++-...+.|..++..+++.+
T Consensus       212 ~giav~------~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          212 FSLAVF------EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEEEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence            333442      3455666666789999997777544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.46  E-value=6.1e-06  Score=78.04  Aligned_cols=161  Identities=12%  Similarity=0.081  Sum_probs=106.4

Q ss_pred             CCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeE
Q 007234          118 GGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM  192 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~  192 (612)
                      .-..++.|+ ++.++.+++.+|  .|+.+|+.+++.+..+..... .....+.+++..|....   +.+.+||.++.+.+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            345899998 676666777766  899999999999998875433 33333333455555554   89999999999999


Q ss_pred             EEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       193 ~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      .+++-..   ....++++++.|+.+. .++.|.++|..+.+......+.....+...+.-+.+      .+|+..+..-.
T Consensus       121 ~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~------~~G~lyan~w~  190 (262)
T 3nol_A          121 RSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW------VDGEIFANVWQ  190 (262)
T ss_dssp             EEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE------ETTEEEEEETT
T ss_pred             EEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE------ECCEEEEEEcc
Confidence            9997432   2234557788777765 578899999988765421111110111122223444      25655544446


Q ss_pred             CCcEEEEECCCcceeccc
Q 007234          273 TGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       273 dg~i~iwd~~~~~~~~~~  290 (612)
                      ++.|.+.|.++++.+..+
T Consensus       191 ~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             SSEEEEECTTTCBEEEEE
T ss_pred             CCeEEEEECCCCcEEEEE
Confidence            889999999999887644

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.46  E-value=5.7e-05  Score=74.58  Aligned_cols=225  Identities=12%  Similarity=0.043  Sum_probs=123.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++|+|+|+++++-..+++|..||..+ .....+.. ..                  ....+.+.+.         ++++
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~------------------~p~gia~~~d---------G~l~   86 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EG------------------KVSGLAFTSN---------GDLV   86 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SS------------------EEEEEEECTT---------SCEE
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CC------------------CceeEEEcCC---------CcEE
Confidence            348999999777766788999999865 33333321 11                  1223333322         5554


Q ss_pred             EEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-eEEEe---------c
Q 007234           90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR---------A  157 (612)
Q Consensus        90 ~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~---------~  157 (612)
                      ++....+  .|..++..+++...............++..+++..+++-..++.|+.+|...++. +....         .
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            4443332  3777788887754222112223345666655554444444688999999876532 21111         0


Q ss_pred             CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-Cee--EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .-.....+  +|+++.|+++.   +.|+.||+.. ++.  ...+.. ......+++.++|+++++.. ..+.|.+++.. 
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-  241 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-  241 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-
Confidence            11234555  88888777665   7999999875 321  122211 12345689999998655543 57789999865 


Q ss_pred             CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (612)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d  273 (612)
                      ++..   .+.....+......++|...  .+++..|++++..
T Consensus       242 G~~~---~~~~~~~~~~~p~~~a~~g~--~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 RSTT---IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG  278 (306)
T ss_dssp             CCEE---EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred             CCEE---EEeecccccCCceEEEEecc--cCCCCEEEEECCC
Confidence            3321   11122222233455666410  0466666665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.45  E-value=6.7e-06  Score=77.73  Aligned_cols=170  Identities=12%  Similarity=0.037  Sum_probs=109.1

Q ss_pred             EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC-CeeEEEECCCCCEEEEeC---CeEEE
Q 007234          108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA---GQLKT  183 (612)
Q Consensus       108 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~---g~i~l  183 (612)
                      .+.++...-..-..++.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ .... .-..+++.  +..|....   +.+.+
T Consensus        45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEE
T ss_pred             EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEE
Confidence            3444432223445899997 3566777788899999999999988887 3332 22345554  44444433   89999


Q ss_pred             EEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCC
Q 007234          184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (612)
Q Consensus       184 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (612)
                      ||.++.+.+.+++-...   ...++++++.|+.+. .++.|.++|..+.+......+..-..+...+.-+.+      .+
T Consensus       121 ~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~------~d  190 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC------AN  190 (268)
T ss_dssp             EETTTTEEEEEEECSSC---CCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE------ET
T ss_pred             EECCcCcEEEEEeCCCc---eeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE------eC
Confidence            99999999999974322   234446788888775 688999999988775421111111111112233444      35


Q ss_pred             CcEEEEEecCCcEEEEECCCcceecccC
Q 007234          264 GLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       264 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      |+..+..-.++.|.+-|.++++.+..+.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            6555444467899999999998876443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.39  E-value=9.6e-05  Score=79.80  Aligned_cols=196  Identities=12%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~   97 (612)
                      ..+..++.++.|.-+|..+|+.+.++..........+      +.......  ..+            +..+++++.++.
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~------~~~~~~g~--a~~------------~~~v~~~t~dg~  128 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPC------CDVVNRGA--AIY------------GDKVFFGTLDAS  128 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCS------SCSCCCCC--EEE------------TTEEEEEETTTE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccc------cccCCCcc--EEE------------CCEEEEEeCCCE
Confidence            3455556544599999999999988864332110000      00000000  001            567889999999


Q ss_pred             EEEEEcCCCeEEEEeccCCC---CCeE-EEEEec---CCC-EEEEEe------cCCcEEEEECCCCceeEEEecCCCC--
Q 007234           98 VLALAVSAGQLKWRLSDCHP---GGVS-AISFAT---HGS-CIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG--  161 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~h~---~~V~-~l~~sp---~~~-~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~--  161 (612)
                      |..+|..+|+.+++......   ..+. ...+..   +|+ .+++++      .++.|+.+|..+|+.+-........  
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~  208 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMG  208 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEE
T ss_pred             EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccc
Confidence            99999999999987643210   0111 111121   233 566654      3789999999999987765432100  


Q ss_pred             ---------------------------------------eeEEEECCCCCEEEEeC------------------------
Q 007234          162 ---------------------------------------ISCMAVSSDGKMLATAA------------------------  178 (612)
Q Consensus       162 ---------------------------------------v~~l~~spdg~~l~~~~------------------------  178 (612)
                                                             -..++++|+..+++.+.                        
T Consensus       209 p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~  288 (582)
T 1flg_A          209 RLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSL  288 (582)
T ss_dssp             EETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCT
T ss_pred             cccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCc
Confidence                                                   02356667666666443                        


Q ss_pred             --CeEEEEEcCCCeeEEEEec--CC--------CCEEEEEEe-eCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          179 --GQLKTFNCSDHKKMQKFSG--HP--------GAVRFMTFS-DNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       179 --g~i~lwd~~~~~~~~~~~~--h~--------~~v~~l~~s-p~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                        +.|..+|.++|+.+-.++.  |.        .++. +... .+|+   .++.++ .+|.++++|..+++..
T Consensus       289 ~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  359 (582)
T 1flg_A          289 YTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQ  359 (582)
T ss_dssp             TCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             ccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEe
Confidence              4799999999999887753  32        1221 1221 4674   555555 7999999999988754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.38  E-value=0.00027  Score=72.26  Aligned_cols=224  Identities=6%  Similarity=-0.073  Sum_probs=135.3

Q ss_pred             CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCC
Q 007234           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA  105 (612)
Q Consensus        26 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~  105 (612)
                      .+.|+.+++..+........                   ......+.|.+.+        +.++++-...+.|..+++..
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~-------------------~~~~~gl~~d~~~--------~~ly~~D~~~~~I~r~~~~g  147 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNN-------------------LENAIALDFHHRR--------ELVFWSDVTLDRILRANLNG  147 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECS-------------------CSCEEEEEEETTT--------TEEEEEETTTTEEEEEETTS
T ss_pred             CccceeeccCCCcEEEEecC-------------------CCccEEEEEecCC--------CeEEEEeCCCCcEEEEecCC
Confidence            45677778766554333221                   1124456666543        44455555667799999987


Q ss_pred             CeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----Ce
Q 007234          106 GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQ  180 (612)
Q Consensus       106 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~  180 (612)
                      +.....+ ........++++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.    +.
T Consensus       148 ~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~  226 (386)
T 3v65_B          148 SNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR  226 (386)
T ss_dssp             CCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             CCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence            6544333 22234567899998655554 445567899988765443333443445679999999777766654    57


Q ss_pred             EEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCcc
Q 007234          181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV  260 (612)
Q Consensus       181 i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (612)
                      |+.+++............-.....|+|+|++..|+.+....+.|..+++......   .+.. .. ......+++.    
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~-~~-~~~P~giav~----  297 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVIS-QG-LPHPFAITVF----  297 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EEEC-SS-CSSEEEEEEE----
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EEEE-CC-CCCceEEEEE----
Confidence            8888886543333333334457899999887777777666788999998754322   1111 11 1112233332    


Q ss_pred             CCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          261 DDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       261 ~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                        ++..+++-...+.|..++..+++.+.
T Consensus       298 --~~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          298 --EDSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             --TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             --CCEEEEeeCCCCeEEEEECCCCcceE
Confidence              34555666667889888866665443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=0.00068  Score=69.52  Aligned_cols=232  Identities=7%  Similarity=-0.043  Sum_probs=138.1

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcE
Q 007234           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I   98 (612)
                      +|..+. .+.|+..++...........                   ......+.|.+.+        +.++++-...+.|
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-------------------~~~~~~l~~d~~~--------~~lywsD~~~~~I  136 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMI  136 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS-------------------CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc-------------------cCcceEEeeeecc--------CceEEEecCCCeE
Confidence            444443 46788888876654433321                   1233456666543        3344444456778


Q ss_pred             EEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEE
Q 007234           99 LALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (612)
Q Consensus        99 ~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l  174 (612)
                      ..+++....   ....+.........++++.+.+..| ++-...+.|.+.++........+...-.....|+++|.+..|
T Consensus       137 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          137 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             EEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred             EEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence            888887522   1112223234567899999854444 454567889999987655444444444568999999976666


Q ss_pred             EEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC-Ccee
Q 007234          175 ATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-PAVF  249 (612)
Q Consensus       175 ~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~  249 (612)
                      +.+.    +.|...++........+...-.....|++++++..|+.+....+.|..+|++.....   .+..... ....
T Consensus       217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~~~~~l~~P  293 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHP  293 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---EEEECSSTTSSE
T ss_pred             EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---EEEeCCCCCCCC
Confidence            6554    578888886544333333334567899999988888877656788999998765432   1222111 1122


Q ss_pred             EEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      . .+.+.      ++..+++-...+.|..+|..+|+.+.
T Consensus       294 ~-gl~v~------~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          294 F-SLAVF------EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             E-EEEEE------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             E-EEEEe------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            2 22232      34555666667889999977776544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.34  E-value=0.00046  Score=69.43  Aligned_cols=200  Identities=6%  Similarity=-0.084  Sum_probs=121.6

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEEC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP  146 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~  146 (612)
                      ...+.|.+.+        +.++++-...+.|..+++..+.....+ ........++++.+.+..| ++-...+.|.+.++
T Consensus        75 ~~~l~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           75 AIALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             EEEEEEETTT--------TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eEEEEEeccc--------cEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            4456666543        444445556677999998876543322 2223456789999855555 45556788999998


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~  222 (612)
                      ........+...-.....++++|.+..|+.+.    +.|..+++........+...-.....++++|++..|+.+....+
T Consensus       146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            65443333333345679999999776666554    56888887654322222223345789999998777777766678


Q ss_pred             eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      .|..++++.....   .+..  ........+++.      ++...++-...+.|..++..+|+.+
T Consensus       226 ~I~~~~~dG~~~~---~~~~--~~~~~P~giav~------~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          226 VIERANLDGSHRK---AVIS--QGLPHPFAITVF------EDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEEEEETTSCSCE---EEEC--SSCSSEEEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEEEeCCCCceE---EEEe--CCCCCceEEEEE------CCEEEEecCCCCeEEEEEccCCCcc
Confidence            8999998764322   1111  111112233332      3455555556778888886666544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.34  E-value=7.9e-05  Score=83.36  Aligned_cols=190  Identities=11%  Similarity=0.030  Sum_probs=106.7

Q ss_pred             EEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-cEEEE-eeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234           10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus        10 ~~~fs-pdg~~las~s~-dg----~i~iwd~~~~-~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ..+|| |||++||.+.. +|    +|+++|+.+| +.+.. +.                     .......|.+.     
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---------------------~~~~~~~WspD-----  231 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---------------------GTNGEIVWGPD-----  231 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---------------------EECSCCEECSS-----
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---------------------CceeeEEEecC-----
Confidence            45999 99999986643 33    4999999988 63210 10                     01223445543     


Q ss_pred             cccCCcEEEEEECC-----CcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCc-
Q 007234           82 RKLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-  150 (612)
Q Consensus        82 ~~~~~~~l~~gs~~-----g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~-  150 (612)
                          ++.|+....+     ..|+++++.++..  ...+.........++.|+|||++|+..+.   ...|+++|+.++. 
T Consensus       232 ----g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~  307 (751)
T 2xe4_A          232 ----HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA  307 (751)
T ss_dssp             ----TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred             ----CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence                4445555543     2488888887642  11221223345678899999998776553   3468888988752 


Q ss_pred             ee--EEEe-cCCCCeeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEE-EecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          151 LL--GKFR-ASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       151 ~~--~~~~-~~~~~v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                      ..  ..+. .......++.|+.++.+++...      ..|..+|+.++..... +..|...+.--.+++.+..++.....
T Consensus       308 ~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~  387 (751)
T 2xe4_A          308 HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR  387 (751)
T ss_dssp             CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE
T ss_pred             CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe
Confidence            22  3332 2334556666554444444433      3788888875322222 33344433323345556666665556


Q ss_pred             CCeEE--EEEc
Q 007234          221 ERYIA--LWRT  229 (612)
Q Consensus       221 d~~i~--vwd~  229 (612)
                      ++..+  ++++
T Consensus       388 ~g~~~l~~~dl  398 (751)
T 2xe4_A          388 AGLTRIWTMMA  398 (751)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEec
Confidence            77544  4554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.33  E-value=0.00023  Score=76.85  Aligned_cols=203  Identities=10%  Similarity=0.074  Sum_probs=122.1

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC
Q 007234           17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (612)
Q Consensus        17 g~~las~s~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~   94 (612)
                      +..+..++. ++.|.-+|. .+|+.+..+.............    +.....   .....+.+..     ....|++++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~----~~~~~~---g~av~p~~g~-----~~~rV~v~t~  129 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVAC----CDLVNR---GLAYWPGDGK-----TPALILKTQL  129 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCS----SCSCCC---CCEEECCCSS-----SCCEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccc----cccccc---ceEEEecCCc-----ceeEEEEEcC
Confidence            345666776 889999999 9999998886432210000000    000000   0011001000     0234888999


Q ss_pred             CCcEEEEEcCCCeEEEEeccCCC---CCeEE-EEEecCCCEEEEEe------cCCcEEEEECCCCceeEEEecCCCC---
Q 007234           95 GGDVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG---  161 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~~h~---~~V~~-l~~sp~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~~---  161 (612)
                      ++.|..+|..+|+.+++......   ..+++ ..+. ++ .++.++      .++.|+.+|.++|+.+-.+......   
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~  207 (599)
T 1w6s_A          130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL  207 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence            99999999999999887642210   01211 1111 34 555554      3899999999999988776643211   


Q ss_pred             ----------------------------------e-eEEEECCCCCEEEEeC--C----------------eEEEEEcCC
Q 007234          162 ----------------------------------I-SCMAVSSDGKMLATAA--G----------------QLKTFNCSD  188 (612)
Q Consensus       162 ----------------------------------v-~~l~~spdg~~l~~~~--g----------------~i~lwd~~~  188 (612)
                                                        + ..+++.++..+++.+.  +                .|..+|.++
T Consensus       208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T  287 (599)
T 1w6s_A          208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT  287 (599)
T ss_dssp             TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCC
Confidence                                              0 1356667777777665  2                799999999


Q ss_pred             CeeEEEEecCC----------CCEEEEEEe-eCC---cEEEEEEcCCCeEEEEEcCCCccc
Q 007234          189 HKKMQKFSGHP----------GAVRFMTFS-DNG---KYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       189 ~~~~~~~~~h~----------~~v~~l~~s-p~~---~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      |+.+-.++...          .++. +... .+|   +.++.++ .+|.+.++|..+++..
T Consensus       288 G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          288 GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALV  346 (599)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCCCCEe
Confidence            99987775432          2222 2222 467   3455554 7999999999988754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0008  Score=66.61  Aligned_cols=202  Identities=6%  Similarity=-0.043  Sum_probs=122.3

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEEC
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP  146 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~  146 (612)
                      ...+.|.+.+        +.++.+-...+.|..+++..+.....+....-....++++.+.+..| ++-...+.|.++++
T Consensus        37 ~~~ld~d~~~--------~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~  108 (318)
T 3sov_A           37 AAAVDFVFSH--------GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  108 (318)
T ss_dssp             EEEEEEEGGG--------TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEeCC--------CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence            4456776654        44555555667799999877632111111222456789998755554 45456788999998


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCC
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~  222 (612)
                      ........+.........++++|.+..|+.+.    +.|+.+++........+...-...+.++++|++..|+.+....+
T Consensus       109 dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          109 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence            65433333334445679999999766555544    57888887643322222333345689999998777777766678


Q ss_pred             eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .|..++++.....   .+.  .........+++.      .+..+++-...+.|..++..+++...
T Consensus       189 ~I~~~d~dG~~~~---~~~--~~~~~~P~glav~------~~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          189 FIHKSNLDGTNRQ---AVV--KGSLPHPFALTLF------EDILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             EEEEEETTSCSCE---EEE--CSCCSCEEEEEEE------TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEEEEcCCCCceE---EEe--cCCCCCceEEEEe------CCEEEEEecCCCeEEEEECCCCCceE
Confidence            9999998764422   111  1111122233332      23555555567889999987776543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.25  E-value=0.00029  Score=69.92  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=115.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEE-EeccC-----------------CCCCeEEEEEecCCCEEEEEecCCcEEEEECC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDC-----------------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~-~~~~~-----------------h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~  147 (612)
                      +.+++++..++.|..|+..++.... .....                 ....+.++++.+++..|+.+...+.|..+|..
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~  109 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE  109 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence            6667888889999999988765431 11000                 01357899999833356666555668899976


Q ss_pred             CCceeEEEec-----CCCCeeEEEECC-CCCEEEEeC-------------------CeEEEEEcCCCeeEEEEecCCCCE
Q 007234          148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV  202 (612)
Q Consensus       148 ~~~~~~~~~~-----~~~~v~~l~~sp-dg~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v  202 (612)
                      +++. ..+..     .......+++.| +|++.++..                   +.|+.||..+++......+ -...
T Consensus       110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p  187 (322)
T 2fp8_A          110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVP  187 (322)
T ss_dssp             CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCC
T ss_pred             CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccC
Confidence            5532 22221     113578899999 998777642                   4688899877764332222 2234


Q ss_pred             EEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec----------
Q 007234          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----------  272 (612)
Q Consensus       203 ~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~----------  272 (612)
                      ..++|+|+|+.|+.+....+.|.+|++........ ..+. ..+.  ...+++.     ++|++.++...          
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~-~~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~  258 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLV-KIPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV  258 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEE-ECSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEE-eCCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence            67899999987776654568899999875432111 1111 1122  4556665     88886666544          


Q ss_pred             CCcEEEEEC
Q 007234          273 TGVCYIWYG  281 (612)
Q Consensus       273 dg~i~iwd~  281 (612)
                      .+.|..+|.
T Consensus       259 ~~~v~~~d~  267 (322)
T 2fp8_A          259 DPKGIKFDE  267 (322)
T ss_dssp             EEEEEEECT
T ss_pred             ccEEEEECC
Confidence            356777765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.16  E-value=0.0024  Score=71.96  Aligned_cols=246  Identities=9%  Similarity=0.146  Sum_probs=146.6

Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..|+++  ..+++|.+- .|+.++-|..|+..++.... +.....           ..+-....+.++....        
T Consensus       310 ~~i~~i--~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~-----------~~~l~~~~V~~i~~d~--------  366 (795)
T 4a2l_A          310 RSVRSI--FMDSQGGMW-LGTYFGGLNYYHPIRNRFKN-IRNIPY-----------KNSLSDNVVSCIVEDK--------  366 (795)
T ss_dssp             SCEEEE--EECTTSCEE-EEESSSCEEEECGGGGSSEE-ECCCTT-----------SSSCSCSSEEEEEECT--------
T ss_pred             CcEEEE--EEeCCcCEE-EEECCCCeEEeCCCcccceE-EcCCCC-----------CCCCCCCeeEEEEECC--------
Confidence            346545  788888744 46666668888876554332 211000           0000011233333221        


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                        ...+-+|+.++-|..|+..++....-...       -....|.++...++|+.|+.|+.++-|..||..+++......
T Consensus       367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~  444 (795)
T 4a2l_A          367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ  444 (795)
T ss_dssp             --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred             --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence              33477899988899999988765432211       123579999998888757778887789999988776433221


Q ss_pred             ----cCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEec------CCCCEEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          157 ----ASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       157 ----~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                          .....|.++...++|++.+...+-+..||.++++.......      +...|.++...++|...+.+  . +-+..
T Consensus       445 ~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~-~Gl~~  521 (795)
T 4a2l_A          445 RNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG--E-EGLSV  521 (795)
T ss_dssp             TTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE--S-SCEEE
T ss_pred             CCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe--C-CceEE
Confidence                12357899999999987776666689999888754322111      23578999998989866543  3 44888


Q ss_pred             EEcCCCccccceee-EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          227 WRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       227 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      |+..+... ..... .....+...+..+...     ++|.+.+ ++.. -|..||..+++
T Consensus       522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDKQ  573 (795)
T ss_dssp             EEEETTEE-EECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTTE
T ss_pred             EeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCCc
Confidence            88776542 00000 0001122334455554     6676544 4444 57888876654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.14  E-value=0.00017  Score=79.44  Aligned_cols=243  Identities=9%  Similarity=0.035  Sum_probs=128.1

Q ss_pred             eeEEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeee
Q 007234            8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         8 ~l~~~fsp-dg~~las~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      ...+++.| +|+.++.|+.++           .+.+||..+++....-....              .+ ...+.......
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--------------~~-~~~~~~~~~~~  252 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--------------KH-DMFCPGISMDG  252 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--------------SC-CCSSCEEEECT
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--------------CC-CCccccccCCC
Confidence            34668888 899888887643           57889988876432110000              00 00011111111


Q ss_pred             cccccccccCCcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCC-eEEEEEecCCCEEEEEe-cC-----CcEEEEECC
Q 007234           76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAG-AD-----GMVCEIDPL  147 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~s-~d-----g~v~iwd~~  147 (612)
                       +        +.++++|+. ++.+.+||+.+++-... ..-+... -.++++.++|+.++.|+ .+     ..+.+||..
T Consensus       253 -~--------g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          253 -N--------GQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             -T--------SCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             -C--------CCEEEeCCCCCCceEEecCcCCceeEC-CCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence             1        677888874 45699999998765422 1112222 23455667899888888 34     569999998


Q ss_pred             CCceeEEE----ecCCCCeeEEEECCCCCEEEEe----------C-CeEEEEEcCCCeeEEEEecCCC---------CEE
Q 007234          148 TGSLLGKF----RASTKGISCMAVSSDGKMLATA----------A-GQLKTFNCSDHKKMQKFSGHPG---------AVR  203 (612)
Q Consensus       148 ~~~~~~~~----~~~~~~v~~l~~spdg~~l~~~----------~-g~i~lwd~~~~~~~~~~~~h~~---------~v~  203 (612)
                      +++-...-    ......-....+..+++.++.+          . ..+..||..+.........+..         .-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            76533220    0000000001112334443333          2 5688999988764433322211         223


Q ss_pred             EEEEee-CCcEEEEEEcCCC-----------eEEEEEcCCCccccceeeE--eecCCceeEEeEEecCCccCCCCcEEEE
Q 007234          204 FMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (612)
Q Consensus       204 ~l~~sp-~~~~l~s~s~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~t  269 (612)
                      ++.|.. +++.++.+|. ++           .+.+||..+..-.   .+.  .+... .........     ++++.++.
T Consensus       403 av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~-R~~~~~~~l-----~~g~i~v~  472 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFA-RTFHTSVVL-----PDGSTFIT  472 (656)
T ss_dssp             EEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSC-CBSCEEEEC-----TTSCEEEE
T ss_pred             eEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCC-cccCCeEEC-----CCCCEEEE
Confidence            444443 6666666652 22           5777777665422   111  11111 111222232     78999999


Q ss_pred             EecC-----------CcEEEEECCCcc
Q 007234          270 ISET-----------GVCYIWYGQNIE  285 (612)
Q Consensus       270 ~s~d-----------g~i~iwd~~~~~  285 (612)
                      |+.+           ..+.+||..+.+
T Consensus       473 GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          473 GGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCcccCcCcCCCCcccceEEEcCCCCc
Confidence            8864           467888876543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.07  E-value=0.002  Score=63.29  Aligned_cols=183  Identities=13%  Similarity=0.098  Sum_probs=109.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-C-cEEEEECCCCceeEEEecC-CCCe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRAS-TKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g-~v~iwd~~~~~~~~~~~~~-~~~v  162 (612)
                      +.++++-..++.|..||...+... .+.  ....+.++++.++|+.+++.... + .|..+|..+++........ ....
T Consensus        43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~  119 (306)
T 2p4o_A           43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  119 (306)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence            565555557888999998764332 221  23568999999999865544332 2 4777887777754333221 2234


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCee-EEEEe---------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-~~~~~---------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      ..++..+++..+++-.  +.|+.+|..+++. +....         +.-...+.+  +|++++|+.+....+.|.+|++.
T Consensus       120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            5666666666555543  8999999876532 21111         111234555  88888887776678899999987


Q ss_pred             C-CccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      . +...........    .....+++.     ++|++.++....+.|.+|+..
T Consensus       198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECCC
Confidence            5 322111111111    122344555     888876666667788888753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.06  E-value=0.0028  Score=60.10  Aligned_cols=192  Identities=8%  Similarity=0.087  Sum_probs=117.2

Q ss_pred             ccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234            5 NIRDILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus         5 ~V~~l~~~fspdg~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      .+..+  +|+|++..| |+...++.|...|.. |+.+..+.-.               +  ..+...+++...       
T Consensus        28 ~lSGl--a~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g--~~D~EGIa~~~~-------   80 (255)
T 3qqz_A           28 NISSL--TWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------F--VKDLETIEYIGD-------   80 (255)
T ss_dssp             CEEEE--EEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------S--CSSEEEEEECST-------
T ss_pred             Cccee--EEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------C--CCChHHeEEeCC-------
Confidence            45556  999987644 556678899999997 8888776421               1  123444555422       


Q ss_pred             cCCcEEEEEECCCcEEEEEcCCCeE---EEEec-----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECC---CCcee
Q 007234           84 LGSSLLVLGTGGGDVLALAVSAGQL---KWRLS-----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLL  152 (612)
Q Consensus        84 ~~~~~l~~gs~~g~I~vwd~~~~~~---~~~~~-----~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~---~~~~~  152 (612)
                        +.++++.-.++.+.++++.....   +....     ........+++|+|.++.|+++.......+|.+.   ....+
T Consensus        81 --g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l  158 (255)
T 3qqz_A           81 --NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL  158 (255)
T ss_dssp             --TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred             --CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence              44445544666788888765442   11221     1234557999999999888888765554454443   11222


Q ss_pred             EEEec-------CCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCC---------CCEEEEEEeeCCcE
Q 007234          153 GKFRA-------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKY  213 (612)
Q Consensus       153 ~~~~~-------~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~  213 (612)
                      ..+..       +...+.+++++|....+++-+   ..+.++|.+ ++.+..+.-..         ...-.|+|.++|+.
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence            22211       233678999999665554444   789999975 54555443221         25678999999985


Q ss_pred             EEEEEcCCCeEEEEE
Q 007234          214 VLSSAVGERYIALWR  228 (612)
Q Consensus       214 l~s~s~~d~~i~vwd  228 (612)
                      .++ + +.+.++++.
T Consensus       238 yIv-s-E~n~~y~f~  250 (255)
T 3qqz_A          238 YIV-S-EPNRFYRFT  250 (255)
T ss_dssp             EEE-E-TTTEEEEEE
T ss_pred             EEE-c-CCceEEEEE
Confidence            554 5 566665554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.06  E-value=0.0032  Score=70.84  Aligned_cols=241  Identities=13%  Similarity=0.076  Sum_probs=143.9

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|+++  ..+++|++. .|+.++-|..||..+++............          .+-....+.++.....        
T Consensus       358 ~V~~i--~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~v~~i~~d~~--------  416 (795)
T 4a2l_A          358 VVSCI--VEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESA----------RGIGSNNIKAVYVDEK--------  416 (795)
T ss_dssp             SEEEE--EECTTSCEE-EEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETT--------
T ss_pred             eeEEE--EECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcc----------cCCCCccEEEEEEcCC--------
Confidence            46444  788888754 46666668999988776543221100000          0000112223322211        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----  157 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----  157 (612)
                       +.+|.+|+.++-|..||..+++...-...   .....|.++...++|.. +.|+. +-+.+||..+++.......    
T Consensus       417 -g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~  493 (795)
T 4a2l_A          417 -KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKEKDGT  493 (795)
T ss_dssp             -TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred             -CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEcccccccc
Confidence             45488899888899999998875432210   13457999998888874 44555 4588999877654332211    


Q ss_pred             --CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEe-------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          158 --STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       158 --~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                        ....|.++...++|++.+...+-+..||..+++.  .+.       .....|.++...++|...+.+  .. -+..||
T Consensus       494 ~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~-Gl~~~d  568 (795)
T 4a2l_A          494 PVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT--RE-GFYCFN  568 (795)
T ss_dssp             BCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE--SS-CEEEEE
T ss_pred             ccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe--CC-CceeEC
Confidence              2357899999999988776666788999887765  332       123568999998999866544  24 478888


Q ss_pred             cCCCccccceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          229 TDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      ..+....    .+...  -+...+..+...     ++|.+.+++ . +-|..|+..+++
T Consensus       569 ~~~~~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t-~-~Gl~~~~~~~~~  616 (795)
T 4a2l_A          569 EKDKQIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST-N-RGISCFNPETEK  616 (795)
T ss_dssp             TTTTEEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE-T-TEEEEEETTTTE
T ss_pred             CCCCcEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc-C-CceEEEcCCCCc
Confidence            7765422    11111  122334445454     667655544 3 457778876654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.03  E-value=0.0021  Score=60.87  Aligned_cols=196  Identities=13%  Similarity=0.133  Sum_probs=125.7

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEEC
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~  146 (612)
                      ....++|.+..        +.+.++...++.|...|+. ++.+.++.-+-....-++++.+++.++++.-.++.+.++++
T Consensus        28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            46667777553        5677778888889999998 88877764333357889999988876666556788999887


Q ss_pred             CCCce---eEEEe------cCCCCeeEEEECCCCCEEEEeC--C--eEEEEEc-CCCeeEEEEe-------cCCCCEEEE
Q 007234          147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNC-SDHKKMQKFS-------GHPGAVRFM  205 (612)
Q Consensus       147 ~~~~~---~~~~~------~~~~~v~~l~~spdg~~l~~~~--g--~i~lwd~-~~~~~~~~~~-------~h~~~v~~l  205 (612)
                      .....   +....      .....+..++|+|+++.|+++.  .  .|+.|+- .....+..+.       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   23332      1233678999999997777766  3  4555551 0111122221       123457889


Q ss_pred             EEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecC-------CceeEEeEEecCCccCCCCcEEEEEecCCcEEE
Q 007234          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (612)
Q Consensus       206 ~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i  278 (612)
                      ++.|....++..+..++.+.++|.... ..   ....+..       ...-...+++.     ++|+ |...++.+.++.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGN-IYIVSEPNRFYR  248 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCC-EEEEETTTEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCC-EEEEcCCceEEE
Confidence            999977666666667889999997654 22   1223321       11234567776     8887 555588777777


Q ss_pred             EEC
Q 007234          279 WYG  281 (612)
Q Consensus       279 wd~  281 (612)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.03  E-value=0.002  Score=65.73  Aligned_cols=196  Identities=10%  Similarity=-0.072  Sum_probs=115.2

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++|++.+..|..+ ...+.|..++...+.....+........                  .++..+..        +.+
T Consensus       120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~------------------glavd~~~--------g~l  173 (386)
T 3v65_B          120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG------------------GLAVDWVH--------DKL  173 (386)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC------------------CEEEETTT--------TEE
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc------------------EEEEEeCC--------CeE
Confidence            45888765555444 4467888888876554333221111111                  12222111        344


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cC-CcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      .++-...+.|.+.++...... .+....-....++++.|.+..|+.+. .. +.|..+++............-.....|+
T Consensus       174 Y~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            444455566888887654433 22233345679999999776666554 34 6898888764433333333344678999


Q ss_pred             ECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       167 ~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ++|++..|+.+.   +.|..+|+........+.........+++ ..+. ++.+....+.|..++..+++.
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~-ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDS-LYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTE-EEEEETTTTEEEEEETTTCCS
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCE-EEEeeCCCCeEEEEECCCCcc
Confidence            998887777665   78999998754433333333445677888 4444 444444677888888655543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.01  E-value=0.0049  Score=60.84  Aligned_cols=193  Identities=7%  Similarity=-0.092  Sum_probs=112.0

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEECCCC---cEEEE-eeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAIC-SGDARIKIWDTLKG---QVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~-s~dg~i~iwd~~~~---~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|++++..|..+ ...+.|..++..+.   ..... +.....                  ....++.....       
T Consensus        34 g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~------------------~p~glavd~~~-------   88 (316)
T 1ijq_A           34 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ------------------APDGLAVDWIH-------   88 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS------------------CCCEEEEETTT-------
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC------------------CcCEEEEeecC-------
Confidence            55899876655544 44688888888751   22111 110000                  11222222211       


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC--CcEEEEECCCCceeEEE-ecCCCC
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKF-RASTKG  161 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d--g~v~iwd~~~~~~~~~~-~~~~~~  161 (612)
                       +.+.++-...+.|.++++...... .+.........++++.|.+..|+.+...  +.|...++. |.....+ ...-..
T Consensus        89 -~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~  165 (316)
T 1ijq_A           89 -SNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQW  165 (316)
T ss_dssp             -TEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSC
T ss_pred             -CeEEEEECCCCEEEEEeCCCCceE-EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCC
Confidence             344444456677999998754433 2322234567899999976666655543  688888875 4444443 223346


Q ss_pred             eeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEE-ec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKF-SG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~-~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ...++++|++..|+.+.   +.|..+|+..... +.+ ..  .-.....+++. .+ .++.+....+.|..++..+++
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCCCCc
Confidence            78999999887777665   6999999875332 223 21  22345677774 34 444444467788888876665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.01  E-value=0.0024  Score=64.15  Aligned_cols=194  Identities=10%  Similarity=-0.075  Sum_probs=113.2

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++|++.+..|..+ ...+.|..++...+.....+......                  ...++.....        +.+
T Consensus        77 ~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~------------------p~glavd~~~--------g~l  130 (349)
T 3v64_C           77 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES------------------PGGLAVDWVH--------DKL  130 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC------------------CCEEEEETTT--------TEE
T ss_pred             EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC------------------ccEEEEecCC--------CeE
Confidence            45888765555544 34677888887655433322111111                  1122222211        344


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe-cC-CcEEEEECCCCceeEEE-ecCCCCeeEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGISCM  165 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s-~d-g~v~iwd~~~~~~~~~~-~~~~~~v~~l  165 (612)
                      .++-...+.|.+.++...... .+....-....++++.|.+..|+.+. .. +.|..+++... ....+ ...-.....+
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGl  208 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGL  208 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEE
T ss_pred             EEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceE
Confidence            445555667888888755433 22233345679999999666655554 44 78999987643 33333 2233467899


Q ss_pred             EECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          166 AVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       166 ~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +++|++..|+.+.   +.|..+|+........+.........+++ ..+ .++.+....+.|..++..+++
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECC-EEEEecCCCCeEEEEEccCCC
Confidence            9999887777765   78999998754333333333445677887 344 444444467788888755554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.99  E-value=0.0014  Score=67.86  Aligned_cols=148  Identities=13%  Similarity=0.125  Sum_probs=86.3

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++++| ++..|..+...+.|+.+|..++....... ...                  ....++|.+.         ++.
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~------------------~P~~ia~d~~---------G~~  192 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLS------------------KVRTICWTHE---------ADS  192 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCS------------------CEEEEEECTT---------SSE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCC------------------CcceEEEeCC---------CCE
Confidence            459998 45555555544889999998776544332 111                  1223444332         554


Q ss_pred             EEEEEC-CC----cEEEEEcCCCeE-EEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEecC-CC
Q 007234           89 LVLGTG-GG----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TK  160 (612)
Q Consensus        89 l~~gs~-~g----~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~  160 (612)
                      |+++.. ++    .+.+++...... ...+.  ......+++++| +|..+++-..++.|..+|...+......... ..
T Consensus       193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            555544 22    234444332211 01111  123457888999 6665555557789999998876543333322 23


Q ss_pred             CeeEEEECCCCCEEEEeC---CeEEEEEcC
Q 007234          161 GISCMAVSSDGKMLATAA---GQLKTFNCS  187 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~---g~i~lwd~~  187 (612)
                      ....++|+|+|++|+.+.   +.|+.++..
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            568999999999666654   789998765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.91  E-value=0.011  Score=65.88  Aligned_cols=192  Identities=8%  Similarity=-0.059  Sum_probs=115.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCe---EEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                      +.++++-...+.|+.+++....   ....+.........+|++.+.++.|+.+ ...+.|.+.++........+......
T Consensus       436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~  515 (791)
T 3m0c_C          436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  515 (791)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred             CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence            3344444455668888886531   1112223234567899999877655544 56789999998755443334444456


Q ss_pred             eeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                      ...|+++|.+..|+.+.    +.|...++........+...-.....|++.+.+..|+.+-.....|...++......  
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--  593 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--  593 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--
Confidence            89999999866666554    578888887554433344344568899999877777777656778999998765433  


Q ss_pred             eeeEeec-CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          238 SCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                       .+.... .....+.+..+       .+++.++-...+.|...+..+|+.+
T Consensus       594 -~v~~~~~~l~~P~glav~-------~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          594 -TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             -EEEECTTTTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             -EEecCCCccCCCCEEEEe-------CCEEEEEECCCCEEEEEeCCCCcce
Confidence             122111 11122222222       2344444455678888887676544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.005  Score=69.12  Aligned_cols=245  Identities=10%  Similarity=0.063  Sum_probs=141.4

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|+++  ..+++|.+ -.|+.++-|..|+..++.... +.......      .  ..+-....+.++.-..         
T Consensus       314 ~v~~i--~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~~~------~--~~~l~~~~v~~i~~d~---------  372 (781)
T 3v9f_A          314 SARYI--FQDSFNNI-WIGTWGGGINFISNAPPTFHT-WSYSPTQM------N--ESSLSNKVVSSVCDDG---------  372 (781)
T ss_dssp             CEEEE--EECSSCCE-EEEEBSSCEEEECSSCCSCEE-EC----CC------C--SSCCSSSCEEEEEECT---------
T ss_pred             eEEEE--EEeCCCCE-EEEecCCeEEEeCCCCCccee-eccCcccc------c--cCCCCCcceEEEEEcC---------
Confidence            45444  77888864 345555567888877655432 21000000      0  0000011222222211         


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEec--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec---CC
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---ST  159 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~  159 (612)
                       ...|.+|+.++-|..|+..++....-..  ......|.++...++|. |+.|+.++-+..+|..+++.. .+..   ..
T Consensus       373 -~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~  449 (781)
T 3v9f_A          373 -QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNEL  449 (781)
T ss_dssp             -TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCC
T ss_pred             -CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCC
Confidence             3457788877789999987654431110  12346789998887776 566777777999998776543 3321   24


Q ss_pred             CCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecC-----CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ..|.++...++|.+.+...+-|..||..+++........     ...|.++...++|...+.+  .++-+..|+..+.+.
T Consensus       450 ~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT--FGGGVGIYTPDMQLV  527 (781)
T ss_dssp             CCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE--SSSCEEEECTTCCEE
T ss_pred             CeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE--cCCCEEEEeCCCCeE
Confidence            579999999988877666677999998877543322222     3578999999999866544  333477788766542


Q ss_pred             ccceeeEeec--CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          235 QSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       235 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .    .+...  -+...+..+...     ++|.+. .++.+|.+..||..+++
T Consensus       528 ~----~~~~~~~l~~~~i~~i~~d-----~~g~lW-i~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          528 R----KFNQYEGFCSNTINQIYRS-----SKGQMW-LATGEGLVCFPSARNFD  570 (781)
T ss_dssp             E----EECTTTTCSCSCEEEEEEC-----TTSCEE-EEETTEEEEESCTTTCC
T ss_pred             E----EccCCCCCCCCeeEEEEEC-----CCCCEE-EEECCCceEEECCCCCc
Confidence            2    11111  122334455554     666644 44557765888876654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.87  E-value=0.0065  Score=59.96  Aligned_cols=145  Identities=9%  Similarity=-0.060  Sum_probs=91.8

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEE-ecCCCCe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~-~~~~~~v  162 (612)
                      +.+.++-...+.|.++++...... .+.........++++.|.+..|+.+.  ..+.|...++.. .....+ ...-...
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~P  168 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWP  168 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCc
Confidence            344444455677889988754432 22223445679999999766666665  257898888753 333333 3333467


Q ss_pred             eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ..++++|++..|+.+.   +.|..+|+........+.+.......+++.. + .++.+....+.|..++..+++.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~-~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCS
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-C-EEEEEecCCCeEEEEECCCCCc
Confidence            8999999887777765   7999999875433222333344566777753 3 3444444678888888876653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.82  E-value=0.00096  Score=74.51  Aligned_cols=183  Identities=10%  Similarity=0.095  Sum_probs=104.0

Q ss_pred             CcEEEEEE-CCCc----EEEEEcCCC-eEEEEeccCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCce--e
Q 007234           86 SSLLVLGT-GGGD----VLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL--L  152 (612)
Q Consensus        86 ~~~l~~gs-~~g~----I~vwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~--~  152 (612)
                      ++.|+.+. .+|.    |+++|+.++ +.+....   .....++.|+|||+.|+....|     ..|+.+++.+++.  .
T Consensus       186 G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~  262 (751)
T 2xe4_A          186 HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV  262 (751)
T ss_dssp             TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE
T ss_pred             CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE
Confidence            66666544 3443    999999998 6321111   1123468899999888777665     3688889887642  2


Q ss_pred             EEEec-CCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCC--ee-EEEE-ecCCCCEEEEEEeeCCcEEEEEEcCC-
Q 007234          153 GKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDH--KK-MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (612)
Q Consensus       153 ~~~~~-~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~--~~-~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d-  221 (612)
                      ..+.. .......+.|+|||++|+...     ..|+++|+.++  +. +..+ .+......++.|+. |..|+..+..+ 
T Consensus       263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~  341 (751)
T 2xe4_A          263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG  341 (751)
T ss_dssp             EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred             EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence            33332 223467889999999988654     47999999875  22 1333 33445555555544 55444444333 


Q ss_pred             ---CeEEEEEcCCCcccccee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCc--EEEEEC
Q 007234          222 ---RYIALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWYG  281 (612)
Q Consensus       222 ---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~--i~iwd~  281 (612)
                         ..|..+++.++...  .. +.. ......+..+.+      .++.++++...+|.  |.++++
T Consensus       342 a~~~~L~~~d~~~~~~~--~~~li~-~~~~~~l~~~~~------~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          342 AVNHKLLIAPRGQPSDW--SHVLVD-HSEDVFMESIAV------RSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CTTCEEEEEETTSTTCC--CCEEEC-CCSSEEEEEEEE------CSSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCcEEEEEcCCCcccc--eeeEEC-CCCCcEEEEEEE------ECCEEEEEEEeCCEEEEEEEec
Confidence               25666776542111  11 111 122223333333      23455666677885  555564

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.82  E-value=0.0031  Score=62.11  Aligned_cols=190  Identities=13%  Similarity=0.241  Sum_probs=117.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC-
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-   94 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-   94 (612)
                      ...+++.....+-+.+||+ +|+.++.+..  +....+-..+.              + ....+.     -.++++... 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~--------------~-~l~g~~-----~dla~as~R~   95 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYD--------------F-PLNGKK-----VDIAAASNRS   95 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEE--------------E-EETTEE-----EEEEEEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecc--------------c-ccCCce-----EeEEEEeCCC
Confidence            3456666666788999999 8999888752  11111111111              0 000000     112333333 


Q ss_pred             --CCcEEEEEc--CCCeEEEEecc-----CCC-CCeEEEEE--ecC-CC-EEEEEecCCcEEEEECC-------CCceeE
Q 007234           95 --GGDVLALAV--SAGQLKWRLSD-----CHP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLG  153 (612)
Q Consensus        95 --~g~I~vwd~--~~~~~~~~~~~-----~h~-~~V~~l~~--sp~-~~-~l~s~s~dg~v~iwd~~-------~~~~~~  153 (612)
                        +++|.+|++  .++. +..+..     +.. ..+.++|+  +|. ++ ++++...+|.+..|++.       +++.++
T Consensus        96 ~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR  174 (355)
T 3amr_A           96 EGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR  174 (355)
T ss_dssp             TTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence              356999966  4444 333311     022 56778888  664 44 58888889999999882       346677


Q ss_pred             EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC-----CCeeEEEEe-cC-CCCEEEEEEe--eCCc-EEEEEEcCC
Q 007234          154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGE  221 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-----~~~~~~~~~-~h-~~~v~~l~~s--p~~~-~l~s~s~~d  221 (612)
                      +|.. ...+..+...+....|+.+.  .-|..++.+     +++.+..+. ++ ...+..|++.  ++++ +|++++..+
T Consensus       175 ~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          175 AFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             EecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            7775 35788999999888888887  347777754     355665552 22 2468888885  4555 777777678


Q ss_pred             CeEEEEEcC
Q 007234          222 RYIALWRTD  230 (612)
Q Consensus       222 ~~i~vwd~~  230 (612)
                      .+..+||..
T Consensus       254 ~s~~Vydr~  262 (355)
T 3amr_A          254 SSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEESS
T ss_pred             CEEEEEECC
Confidence            899999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.81  E-value=0.0048  Score=63.87  Aligned_cols=189  Identities=12%  Similarity=0.093  Sum_probs=105.0

Q ss_pred             EEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .++|+|+  +..|..+...+.|+.+|..+++...... ...                  ....+++.+.         +.
T Consensus       143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~------------------~P~giavd~d---------G~  194 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIG------------------QCADVNFTLN---------GD  194 (433)
T ss_dssp             EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCS------------------CEEEEEECTT---------CC
T ss_pred             eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCC------------------CccEEEECCC---------CC
Confidence            4599995  3344444333899999998887654432 111                  1223333332         55


Q ss_pred             EEEEEECCC----c-EEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEE-ecCC-
Q 007234           88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST-  159 (612)
Q Consensus        88 ~l~~gs~~g----~-I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~-  159 (612)
                       |+++...+    . +..++...+........ .-....+++++| +|..+++-..++.|+.+|..++.....+ .... 
T Consensus       195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence             44444322    1 33333332211001111 223456788999 6655555556788999998877663332 2222 


Q ss_pred             CCeeEEEECCCCCEEEEeC---CeEEEEEcC--CCee--EEEEecC---------------CCCEEEEEE---------e
Q 007234          160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S  208 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s  208 (612)
                      .....++|+|+|+.|+.+.   +.|+.+++.  ++..  ...+.+.               -.....+++         .
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            2335799999999666655   689998865  3321  1223222               123567888         5


Q ss_pred             eCCcEEEEEEcCCCeEEEEEc
Q 007234          209 DNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       209 p~~~~l~s~s~~d~~i~vwd~  229 (612)
                      ++|.++++ ....+.|+.++.
T Consensus       353 ~~g~lyva-D~~n~~I~~~~~  372 (433)
T 4hw6_A          353 DEYDFYFC-DRDSHTVRVLTP  372 (433)
T ss_dssp             CCEEEEEE-ETTTTEEEEECT
T ss_pred             CCCcEEEE-ECCCCEEEEECC
Confidence            66655444 445778888874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.024  Score=63.55  Aligned_cols=242  Identities=12%  Similarity=0.075  Sum_probs=137.6

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|+++  ...++|.+.+. ..+ -|.+||..+++.......... .          .......+.++.-..         
T Consensus       212 ~i~~i--~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~-~----------~~l~~~~i~~i~~d~---------  267 (781)
T 3v9f_A          212 DVRCI--YKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGN-I----------HGALSSYIFSIKQLK---------  267 (781)
T ss_dssp             SEEEE--EECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECT---------
T ss_pred             ceeEE--EEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCc-c----------ccccCceEEEEEECC---------
Confidence            45444  77788876554 344 488899877654421110000 0          000011222222211         


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEec-------------cCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS-------------DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~-------------~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~  151 (612)
                       ...+.+|+..+-|.++|..++.......             .-....|.++...++|. |..|+.++-|..++...+..
T Consensus       268 -~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~  345 (781)
T 3v9f_A          268 -DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF  345 (781)
T ss_dssp             -TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC
T ss_pred             -CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc
Confidence             4567888887779999998776432110             11245799999888775 77788778899999765543


Q ss_pred             eEEEec----------CCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeCCcEEEEE
Q 007234          152 LGKFRA----------STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       152 ~~~~~~----------~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      .. +..          ....|.++...++|.+.+... +-|..||..+++...-.   ......|.++...++|...+ +
T Consensus       346 ~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-g  423 (781)
T 3v9f_A          346 HT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-G  423 (781)
T ss_dssp             EE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-E
T ss_pred             ee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-E
Confidence            22 211          234699999999888777663 67888998765432111   12346788888888887555 4


Q ss_pred             EcCCCeEEEEEcCCCccccceeeEee-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          218 AVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      + .++-+..++..+++..    .+.. ......+..+...     ++|. |..++. +-|..||..+++.
T Consensus       424 t-~~~Gl~~~~~~~~~~~----~~~~~~~~~~~v~~i~~d-----~~g~-lwigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          424 T-YLGNISYYNTRLKKFQ----IIELEKNELLDVRVFYED-----KNKK-IWIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             E-TTEEEEEECSSSCEEE----ECCSTTTCCCCEEEEEEC-----TTSE-EEEEET-TEEEEEESSSSSC
T ss_pred             e-ccCCEEEEcCCCCcEE----EeccCCCCCCeEEEEEEC-----CCCC-EEEEEC-CceEEEeCCCCeE
Confidence            4 4566888887765422    0111 1122334444443     5555 455555 5688899876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.81  E-value=0.0075  Score=61.67  Aligned_cols=146  Identities=7%  Similarity=-0.088  Sum_probs=91.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCee
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                      +.+.++-...+.|.+.++........+ ...-....++++.|.+..|+.+..  .+.|...++........+...-....
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence            444455555677888888765543232 223455789999997666665542  47899999864433333333345789


Q ss_pred             EEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       164 ~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      .|+++|++..|+.+.   +.|..+|+...........  .-.....+++.  +..++.+....+.|..++..+++.
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence            999999888887776   6899999875443222232  22345566663  334444444567788888666653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.79  E-value=0.0004  Score=76.35  Aligned_cols=227  Identities=6%  Similarity=-0.078  Sum_probs=122.8

Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        11 ~~fspdg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +++.++|++++.|+. ++.+.+||..+++-...-.                 ....+...+....+ +        ++++
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-----------------~~~~R~~~s~~~~~-d--------g~iy  301 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-----------------MQVARGYQSSATMS-D--------GRVF  301 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-----------------CSSCCSSCEEEECT-T--------SCEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-----------------CCccccccceEEec-C--------CeEE
Confidence            578899999999985 5689999998775433210                 00011111111111 1        6778


Q ss_pred             EEEE-CC-----CcEEEEEcCCCeEEEEe----ccCCCCCeEEEEEecCCCEEEEEecC---------CcEEEEECCCCc
Q 007234           90 VLGT-GG-----GDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPLTGS  150 (612)
Q Consensus        90 ~~gs-~~-----g~I~vwd~~~~~~~~~~----~~~h~~~V~~l~~sp~~~~l~s~s~d---------g~v~iwd~~~~~  150 (612)
                      ++|+ .+     .++.+||+.++.-...-    ....... ....+..++..++.++.+         ..+..||..+..
T Consensus       302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            8887 34     45999999987754210    0000000 001122344444555444         456788887765


Q ss_pred             eeEEEecCC---------CCeeEEEEC-CCCCEEEEeC--C-----------eEEEEEcCCCeeEEEE--ecCCCC-EEE
Q 007234          151 LLGKFRAST---------KGISCMAVS-SDGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGA-VRF  204 (612)
Q Consensus       151 ~~~~~~~~~---------~~v~~l~~s-pdg~~l~~~~--g-----------~i~lwd~~~~~~~~~~--~~h~~~-v~~  204 (612)
                      .........         ..-.++.+. .++++++.|+  +           .+.+||..+.+.....  ..+... -.+
T Consensus       381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~  460 (656)
T 1k3i_A          381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  460 (656)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence            433322111         122444443 3777877776  1           6888898877654332  112222 234


Q ss_pred             EEEeeCCcEEEEEEcCC----------CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          205 MTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      ++..|+++.++.+|..+          ..+.+||..+.+-.   .+.....+.....+....     ++|+.++.|+.
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG~  530 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGGG  530 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEECC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCCC
Confidence            56678999888887321          46889998775422   111122222222233343     78999988885

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.76  E-value=0.00011  Score=81.32  Aligned_cols=194  Identities=7%  Similarity=-0.078  Sum_probs=108.9

Q ss_pred             EEEEEECCCcEEEEEcCCC---eEEEEeccCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           88 LLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                      ++++-...+.|+.+++.+.   .....+.........++++.+.+..| ++-...+.|.++++........+........
T Consensus       420 Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~  499 (699)
T 1n7d_A          420 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR  499 (699)
T ss_dssp             EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC
T ss_pred             EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc
Confidence            3333345567888888751   11112211122345678888654444 4445678899999865543333333334568


Q ss_pred             EEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       164 ~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      .|+++|.+.+|+.+.    +.|+.+++........+...-.....|+|+|++..|+.+....+.|.++++......   .
T Consensus       500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~---~  576 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---T  576 (699)
T ss_dssp             CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE---E
T ss_pred             eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE---E
Confidence            899999766666554    578887775432211122223345689999987766666656788999998754322   1


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      +............+.+.     .+ .++++....+.|..++..+++.+..+
T Consensus       577 ~~~~~~~~~~P~glavd-----~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          577 ILEDEKRLAHPFSLAVF-----ED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             ECCCSSSCSSCCCCEEE-----TT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EEecCCcCCCceEeEEE-----CC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            11111100111122222     32 44555556789999998888776544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.75  E-value=0.018  Score=56.79  Aligned_cols=202  Identities=14%  Similarity=0.204  Sum_probs=117.9

Q ss_pred             EEEeeec-ccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecC----CCE--EEEEe--c--C
Q 007234           70 CMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GSC--IYSAG--A--D  138 (612)
Q Consensus        70 ~~~w~~~-~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~--l~s~s--~--d  138 (612)
                      -..|..+ ++.      ..+++.....+-+.+||+ +|+.+..+..   +.++.+..-|+    |+.  ++.++  .  +
T Consensus        29 pavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~   98 (355)
T 3amr_A           29 PAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGK   98 (355)
T ss_dssp             EEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTC
T ss_pred             ccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCC
Confidence            3567633 333      456666667778999999 8888877632   56777777663    222  33333  3  5


Q ss_pred             CcEEEEEC--CCCceeEEEec------CC-CCeeEEEE--CCC-CC-EEEEeC--CeEEEEEcC-------CCeeEEEEe
Q 007234          139 GMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNCS-------DHKKMQKFS  196 (612)
Q Consensus       139 g~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--spd-g~-~l~~~~--g~i~lwd~~-------~~~~~~~~~  196 (612)
                      ++|.+|++  .++. +..+..      .. ..+..+|+  +|. ++ ++++..  |.+..|++.       +.+.+++|.
T Consensus        99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            78999966  3443 444421      11 45677888  774 54 455555  888888872       346678886


Q ss_pred             cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeec--CCceeEEeEEecCCccCCCCc-EEEEEec-
Q 007234          197 GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGL-YVLAISE-  272 (612)
Q Consensus       197 ~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~t~s~-  272 (612)
                      . .+.+-.+...+....|+.+- ++.-|..++.+.........+....  +-...+..+.+..   .++++ +|++++. 
T Consensus       178 l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQG  252 (355)
T 3amr_A          178 M-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQG  252 (355)
T ss_dssp             C-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEGG
T ss_pred             C-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcCC
Confidence            4 45678888888877888875 6766655564422211111222221  1111233333310   14444 6777774 


Q ss_pred             CCcEEEEECC-Cccee
Q 007234          273 TGVCYIWYGQ-NIEEL  287 (612)
Q Consensus       273 dg~i~iwd~~-~~~~~  287 (612)
                      ++...+||.+ +.+.+
T Consensus       253 ~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          253 NSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             GTEEEEEESSTTCCEE
T ss_pred             CCEEEEEECCCCCcEE
Confidence            6799999986 44443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.0092  Score=61.67  Aligned_cols=141  Identities=11%  Similarity=0.139  Sum_probs=92.2

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-C----cEEEEECCCCcee--EEEecCC
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST  159 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g----~v~iwd~~~~~~~--~~~~~~~  159 (612)
                      ..|+++...+.|+.+|+.++...... . ......+++|+++|+.|+.+... +    .+..++. .+...  ..+.. .
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~~~-~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~  225 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVSTVY-S-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-G  225 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEEEE-C-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-C
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEEEe-c-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-C
Confidence            34566655577999999887764333 2 44568999999999977766542 2    3444443 33222  23332 3


Q ss_pred             CCeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .....++++| +|.++++-.  +.|+.++..++....... +.......++|+|+|++|+.+....+.|..++.+.
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            3457889999 666655543  799999998776422222 12234678999999997776665678999988764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.62  E-value=0.018  Score=64.10  Aligned_cols=144  Identities=7%  Similarity=-0.085  Sum_probs=91.1

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      .++++-...+.|.+.++...... .+....-....+|++.|.+..|+.+..  .+.|...++........+...-.....
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G  562 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  562 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence            44455555677999998755443 333334456899999997666666543  368999998644443334434457899


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      |++++.+..|+.+.   +.|..+++........+.+.  -....+|++.  +.+|+.+....+.|...+..+++
T Consensus       563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence            99998877777766   68999998655443333332  2234455553  34566555456777777766654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.61  E-value=0.0098  Score=61.49  Aligned_cols=141  Identities=11%  Similarity=0.121  Sum_probs=88.4

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCce-eEEEecCCC
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK  160 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~-~~~~~~~~~  160 (612)
                      ..|+++...+.|+.+|+.++......  .......+++|+++|+ |+.+...+     .+...+...+.. ...+. ...
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~  228 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR  228 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence            34555555588999999888775333  2445689999999999 55554322     233333222211 11222 234


Q ss_pred             CeeEEEECC-CCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       161 ~v~~l~~sp-dg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ....++++| +|.+.++-.  +.|+.+|..++.....+.  +....-..++|+|++++|+.+....+.|..++.+.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            557789999 666555443  789999998776533332  12222346999999997777665678899988763

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.53  E-value=0.019  Score=56.11  Aligned_cols=202  Identities=13%  Similarity=0.159  Sum_probs=119.7

Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEE-eeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234           10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus        10 ~~~fspdg~~las~s-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      +++|++....|..++ ..|+|..||...+..... +.+..            ..+........+.|...++.      +.
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s------------~~g~~~~~~sGl~~~~~D~~------gr   78 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS------------SNGDGEQQMSGLSLLTHDNS------KR   78 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC------------CSSCCSEEEEEEEESSSSSC------CE
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc------------ccCCCcceeeEEEEeccCCC------Cc
Confidence            348988555555555 689999999976654433 11100            00111122356667421221      55


Q ss_pred             EEEEEEC-------------CCcEEEEEcC---CCeEEEEecc-----C-------CCCCeEEEEEecCCCEEEEEecC-
Q 007234           88 LLVLGTG-------------GGDVLALAVS---AGQLKWRLSD-----C-------HPGGVSAISFATHGSCIYSAGAD-  138 (612)
Q Consensus        88 ~l~~gs~-------------~g~I~vwd~~---~~~~~~~~~~-----~-------h~~~V~~l~~sp~~~~l~s~s~d-  138 (612)
                      ++++...             +..|..||+.   +++.++...-     +       -.....+++..++|+..++++.- 
T Consensus        79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred             EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence            6665432             4559999999   7776654421     1       11358899999999999999888 


Q ss_pred             CcEEEEECCCCceeEEEec------CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee--EEEEe--cC---CCCEE
Q 007234          139 GMVCEIDPLTGSLLGKFRA------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFS--GH---PGAVR  203 (612)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~--~~~~~--~h---~~~v~  203 (612)
                      +.|...+.. |+.+..+..      .....+.|+++|+|+.|++..  |.+..+|+.+...  +. ..  |.   -....
T Consensus       159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~d  236 (334)
T 2p9w_A          159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTE  236 (334)
T ss_dssp             CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEE
T ss_pred             CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcc
Confidence            888888865 333333321      112477999999999888876  8999999885432  21 11  32   12234


Q ss_pred             EE-EEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          204 FM-TFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       204 ~l-~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .| ..-.+|+.++.+....+.+.+.+.+.
T Consensus       237 gilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          237 KIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             cccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            43 33357777555543455555555444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.50  E-value=0.028  Score=58.49  Aligned_cols=152  Identities=11%  Similarity=0.154  Sum_probs=85.8

Q ss_pred             EEEEcC-CC-CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEe-------eeccccc
Q 007234           10 LTSFSP-AL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK   80 (612)
Q Consensus        10 ~~~fsp-dg-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-------~~~~~~~   80 (612)
                      .++|+| ++ +++++-...+.|++.|..++.+..........               ......++|       .+.    
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~---------------~~~p~~ia~~~~~~~~d~~----  203 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP---------------TNRIRSIAFNKKIEGYADE----  203 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS---------------CSBEEEEEECCCBTTTBCT----
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc---------------cCCCcEEEEeecccccCCC----
Confidence            459999 34 44444444577999999887766544321100               112233444       222    


Q ss_pred             ccccCCcEEEEEECCC-c------EEEEEcCC-CeEE-----EEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEEC
Q 007234           81 KRKLGSSLLVLGTGGG-D------VLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDP  146 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g-~------I~vwd~~~-~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~  146 (612)
                           +..++++...+ .      |.+++... +...     ..+..  -....+++++|++..|+ +-..++.|..+|+
T Consensus       204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                 55566665554 2      66665443 1221     11111  12345778899555544 5557788999998


Q ss_pred             C-------CCce-----------eEE-Eec-CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC
Q 007234          147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS  187 (612)
Q Consensus       147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~  187 (612)
                      .       ++..           ... +.. .......|+|+|+|++|+.+.   +.|+.++..
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            7       5543           122 222 223568999999999766654   788886653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.44  E-value=0.025  Score=55.18  Aligned_cols=153  Identities=8%  Similarity=0.025  Sum_probs=102.4

Q ss_pred             eeEEEeeecccccccccCCcEEEEEE-CCCcEEEEEcCCCeEEEEeccC----CC--CCeEEEEE---ecCCCEEEEEe-
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG-  136 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~----h~--~~V~~l~~---sp~~~~l~s~s-  136 (612)
                      ..+..|...         ...+.+++ ..|.|..|++..+........+    ..  ..+.++.|   .|+++++++.. 
T Consensus        15 PE~~~wd~~---------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           15 PEDTIYDRT---------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             CSCEEEETT---------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             CcCccCcCC---------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            346677655         34455555 7899999999866544333222    11  14689999   68877666543 


Q ss_pred             ------------cCCcEEEEECC---CCceeEEEec-------------CCCCeeEEEECCCCCEEEEeC---CeEEEEE
Q 007234          137 ------------ADGMVCEIDPL---TGSLLGKFRA-------------STKGISCMAVSSDGKMLATAA---GQLKTFN  185 (612)
Q Consensus       137 ------------~dg~v~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~spdg~~l~~~~---g~i~lwd  185 (612)
                                  .+..|..+|+.   +++.+....-             ....+..++..++|+..++++   +.|..++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                        16779999998   7877665441             112588999999999988776   5666666


Q ss_pred             cCCCeeEEEEecC------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          186 CSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       186 ~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      .... .+..+...      ....+.|+++|+|+.|++... .+.+..+|+..
T Consensus       166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            6543 22222111      112568999999999988874 89999999884

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.44  E-value=0.017  Score=56.15  Aligned_cols=184  Identities=10%  Similarity=0.049  Sum_probs=92.9

Q ss_pred             CcEEEEEECC-----CcEEEEEcCCCe---EEEEec-cCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCce
Q 007234           86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL  151 (612)
Q Consensus        86 ~~~l~~gs~~-----g~I~vwd~~~~~---~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~  151 (612)
                      +.+++.|+.+     ..+.+||+.+++   -...-. ......-..+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            5667777755     359999998876   321110 111111122222  56666666643     3688999887653


Q ss_pred             eEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEcC-
Q 007234          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAVG-  220 (612)
Q Consensus       152 ~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~~-  220 (612)
                      ...  +........++.+  ++++++.|+       ..+.+||+.+.+-... .....+ ....+..-+++.++.+|.. 
T Consensus       141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~  217 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDG  217 (301)
T ss_dssp             EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCC
Confidence            332  2211222222222  677777765       4699999988754322 111111 1111222356666666532 


Q ss_pred             ---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (612)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~  284 (612)
                         ...+.+||+.+..-.   .+..+..+.....++.       -+++.++.|+.+     ..+.+||.++.
T Consensus       218 ~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence               246888998876532   1211221111112222       245666666654     35677777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.40  E-value=0.043  Score=59.45  Aligned_cols=188  Identities=9%  Similarity=-0.003  Sum_probs=109.5

Q ss_pred             EEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        88 ~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      .|+.+. ..+.|..+++........+....-....++++.+.++.|+.+ ...+.|.+.++........+...-.....|
T Consensus        53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~I  132 (619)
T 3s94_A           53 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI  132 (619)
T ss_dssp             EEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCE
T ss_pred             EEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceE
Confidence            344444 456688888876532222222223568999999966655554 467899999986543333333344467899


Q ss_pred             EECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeE
Q 007234          166 AVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       166 ~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      +++|.+..|+.+.    +.|...++............-.....+++.+++..|+.+-...+.|...+++......  ...
T Consensus       133 avdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~  210 (619)
T 3s94_A          133 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VVK  210 (619)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred             EEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--EEe
Confidence            9999766665554    4777777764433333333445678999999877777776567788888887654331  111


Q ss_pred             -eecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          242 -AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       242 -~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                       .+.++.    .+++.     .+ ...++-...+.|...|..+++..
T Consensus       211 ~~~~~P~----gi~~~-----~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          211 GSLPHPF----ALTLF-----ED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             -----CC----CEEES-----SS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCCCCce----EEEEe-----CC-EEEEecCCCCEEEEEECCCCccc
Confidence             122222    22232     33 44444455778999998777544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.40  E-value=0.11  Score=52.34  Aligned_cols=192  Identities=11%  Similarity=0.104  Sum_probs=121.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-CceeEEEecCC----C
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~----~  160 (612)
                      ...+++=. ...+.|||+++.+.+..+.  ....|.--.|-.+. .|+-. .+..|+-|++.. ..+.+.|..|.    .
T Consensus        77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~  151 (494)
T 1bpo_A           77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (494)
T ss_dssp             SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccc
Confidence            44555554 6669999999998887664  23466666675544 33333 256799999864 35666666553    3


Q ss_pred             CeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEEEecCCCCEEEEEEee--CCcEEEEEEcC---CCeEEE
Q 007234          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--NGKYVLSSAVG---ERYIAL  226 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~~---d~~i~v  226 (612)
                      .|..-..++++++++..+         |.+.+|..+.+ .-+.+.||...-..+.+..  ....+++-+..   .+.+.|
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi  230 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence            677888899999988544         68999998765 3466788865544433321  11223332222   268889


Q ss_pred             EEcCCC---ccc-ccee---eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          227 WRTDGV---KKQ-SASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       227 wd~~~~---~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      -++...   ... ....   .+..+....+.-....+     +.-..+...+.-|.|++||++++..+.
T Consensus       231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeee
Confidence            888543   111 0001   11112334444455555     666788899999999999999998875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.32  E-value=0.2  Score=54.18  Aligned_cols=228  Identities=6%  Similarity=-0.036  Sum_probs=135.3

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcE
Q 007234           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I   98 (612)
                      +|..+ ..+.|+..++.+......+..                .. -.....+.|.+.+        +.++++-..++.|
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~----------------~~-~~~~~~l~~d~~~--------~~lywtD~~~~~I   61 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPL----------------TG-VKEASALDFDVTD--------NRIYWTDISLKTI   61 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCC----------------CS-CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEc----------------CC-CCceEEEEEECCC--------CEEEEEECCCCeE
Confidence            45444 456788889876554332210                00 1123345555543        4444455566778


Q ss_pred             EEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEe
Q 007234           99 LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA  177 (612)
Q Consensus        99 ~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~  177 (612)
                      ..+++........+ ........++++.+.+..|+.+ ...+.|.+.++........+...-.....|+++|....|+.+
T Consensus        62 ~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           62 SRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             EEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence            88888765443222 2222457799998766655544 456789999986544333333344567999999965555554


Q ss_pred             C----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeE
Q 007234          178 A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (612)
Q Consensus       178 ~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (612)
                      .    +.|...++........+ ..-.....+++.+++..|+.+-...+.|...++......   . .. ....... .+
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v-~~-~~l~~P~-gl  213 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---V-IA-DDLPHPF-GL  213 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E-EE-ECCSCEE-EE
T ss_pred             CCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---E-ee-ccCCCce-EE
Confidence            4    57888888655433323 344567899999988878777667789999998765432   1 11 1112222 23


Q ss_pred             EecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       254 ~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      ++.     . +...++-...+.|...|..+++.
T Consensus       214 av~-----~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          214 TQY-----Q-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEE-----T-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEE-----C-CEEEEecCCCCEEEEEECCCCCc
Confidence            332     3 34445545577888888766643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.21  E-value=0.12  Score=50.91  Aligned_cols=177  Identities=12%  Similarity=0.157  Sum_probs=96.9

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEE-EEC--CCCceeEEEecCCCCeeEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE-IDP--LTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~i-wd~--~~~~~~~~~~~~~~~v~~l  165 (612)
                      +++++.+|.|.. ....|+.-......+...+.++.+.|++.+++.+ .+|.+.. +|-  .+.+.+.  ......+..+
T Consensus       135 ~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~  210 (327)
T 2xbg_A          135 AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNM  210 (327)
T ss_dssp             EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEE
T ss_pred             EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCcccee
Confidence            344445665422 2223332222333456689999999988777665 4555444 442  2223321  2234578899


Q ss_pred             EECCCCCEEEEeC-CeEEEEEcCCCeeEEEEec----CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceee
Q 007234          166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       166 ~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (612)
                      .+.+++++++++. |.+++.+...++.-..+..    +...+..+.+.+++..++++  .++.+ .+..+.++.-  ..+
T Consensus       211 ~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g--~~g~i-~~S~DgG~tW--~~~  285 (327)
T 2xbg_A          211 GFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG--GAGAL-LCSQDGGQTW--QQD  285 (327)
T ss_dssp             EECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE--STTCE-EEESSTTSSC--EEC
T ss_pred             EECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe--CCCeE-EEeCCCCccc--EEc
Confidence            9999999888877 8887765333443333321    22358889999888766654  36766 4455544321  111


Q ss_pred             Eee-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          241 LAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ... ..+... ..+.+.     ++ ..+++++.+|.|.-++-
T Consensus       286 ~~~~~~~~~~-~~v~~~-----~~-~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          286 VDVKKVPSNF-YKILFF-----SP-DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GGGTTSSSCC-CEEEEE-----ET-TEEEEECSTTEEEEECC
T ss_pred             CccCCCCCCe-EEEEEE-----CC-CceEEEcCCceEEEEcC
Confidence            100 112223 334443     33 44677778898777653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.21  E-value=0.0011  Score=73.18  Aligned_cols=144  Identities=8%  Similarity=-0.079  Sum_probs=83.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEE-ecCCCCe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~-~~~~~~v  162 (612)
                      +.++++-...+.|.++++...... .+.........++++.|.+..|+.+..  .+.|..+++... ....+ ...-...
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~P  542 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWP  542 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSC
T ss_pred             CcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCc
Confidence            334444455677999998765443 332222345678899996665555443  267888887533 22232 2223456


Q ss_pred             eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEec--CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..|+|+|++..|+.+.   +.|..+|+........+..  .-.....|++..+  .++.+....+.|..++..+++
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence            7899999877666655   6899999865432222221  1122334555433  444444456788888876664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.19  E-value=0.07  Score=51.91  Aligned_cols=184  Identities=11%  Similarity=0.071  Sum_probs=93.3

Q ss_pred             CcEEEEEECC----CcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCCceeEE
Q 007234           86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK  154 (612)
Q Consensus        86 ~~~l~~gs~~----g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~~~~~~  154 (612)
                      +.+++.|+.+    ..+.+||+.+++-...-. ......-..+.+  +++.++.|+.+      ..+.+||..+.+-...
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            5667777654    458999999886432211 111111122222  56677777655      4688999887653322


Q ss_pred             --EecCCCCeeEEEECCCCCEEEEeC-----------CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEcC
Q 007234          155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       155 --~~~~~~~v~~l~~spdg~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~~  220 (612)
                        +........++.  -++++++.|+           ..+.+||+.+.+-.. +.....+ .......-+++.++.+|..
T Consensus       134 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~  210 (306)
T 3ii7_A          134 PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAVGGQN  210 (306)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred             CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEECCEEEEEeCCC
Confidence              111111222222  2667777765           248899998875432 2211111 1111122256666665521


Q ss_pred             C----CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234          221 E----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (612)
Q Consensus       221 d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~  284 (612)
                      .    ..+.+||+.+..-.   .+..+..+.....++.       -+++.++.|+.+     ..+.+||..+.
T Consensus       211 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAA-------VGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEE-------ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEE-------ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            1    35788898776422   1111221111112222       245677777654     45777887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.18  E-value=0.17  Score=54.81  Aligned_cols=185  Identities=13%  Similarity=0.037  Sum_probs=112.7

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      .+|+. +..+.|+..++.+......+....-..+.+++|++.+..++.+ ..++.|+.+++........+......+..+
T Consensus         7 ~~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             cEEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            34444 3667899999987654333322234568899999976665554 467899999987554444444333467889


Q ss_pred             EECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcC-CCeEEEEEcCCCccccceeeE
Q 007234          166 AVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       166 ~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~-d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      ++.+.+..|+.+.   +.|.+.++........+...-.....|++.|...+|+.+... .+.|...+++.....   .+.
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l~  162 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TLV  162 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EEE
Confidence            9988766665554   789999987553322232334556899999865556655412 457777777665432   111


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEEEEE-ecCCcEEEEECCC
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN  283 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~-s~dg~i~iwd~~~  283 (612)
                         ..-.....++++     +++..|..+ ...+.|..+|+..
T Consensus       163 ---~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          163 ---PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             ---CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred             ---CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCCC
Confidence               122233455555     554444444 3455677777643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.17  E-value=0.074  Score=51.64  Aligned_cols=184  Identities=11%  Similarity=0.052  Sum_probs=92.9

Q ss_pred             CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCceeEE-
Q 007234           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK-  154 (612)
Q Consensus        86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~~-  154 (612)
                      +.+++.|+.++     .+.+||+.+++-...-.......-.+++. -+++.++.|+.++     .+.+||+.+.+-... 
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            56677776543     48999998876432211111111112222 2566777777553     578889877653322 


Q ss_pred             -EecCCCCeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEcC--
Q 007234          155 -FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG--  220 (612)
Q Consensus       155 -~~~~~~~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~~--  220 (612)
                       +........++.+  ++++++.|+         ..+.+||+.+.+-...  ++...... +++ .-+++.++.+|..  
T Consensus       141 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~  216 (302)
T 2xn4_A          141 PMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGP  216 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBSSS
T ss_pred             CCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEE-EECCEEEEECCCCCC
Confidence             1111112222222  567777665         2588999988754322  11111111 222 2356666666532  


Q ss_pred             --CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECCCc
Q 007234          221 --ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (612)
Q Consensus       221 --d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~~~  284 (612)
                        ...+.+||+.+..-.   .+..+........++ .      -+++.++.|+.++     .+.+||..+.
T Consensus       217 ~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~-~------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          217 LVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVC-A------VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SBCCCEEEEETTTTEEE---EECCCSSCCBSCEEE-E------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             cccceEEEEeCCCCCEe---eCCCCCCccccCeEE-E------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence              136888998776432   111121111111112 1      3456777776543     4788887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.17  E-value=0.096  Score=52.11  Aligned_cols=176  Identities=12%  Similarity=0.123  Sum_probs=102.0

Q ss_pred             CCCcEEEEEcCC--CeEE-EEecc----CCCCCeEEEEEec--CCC-EEEEEec---CCcEEEEECCCC-c---eeEEEe
Q 007234           94 GGGDVLALAVSA--GQLK-WRLSD----CHPGGVSAISFAT--HGS-CIYSAGA---DGMVCEIDPLTG-S---LLGKFR  156 (612)
Q Consensus        94 ~~g~I~vwd~~~--~~~~-~~~~~----~h~~~V~~l~~sp--~~~-~l~s~s~---dg~v~iwd~~~~-~---~~~~~~  156 (612)
                      .+|.|.++|+.+  ++.. ..+..    ...-...++.+.+  ++. +|+.+..   +.+|.+|++..+ .   .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999974  2321 12211    1234678888877  354 4555532   467778776543 2   233344


Q ss_pred             cCC-CCeeEEEECCCCCEEEEeC-------------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEE
Q 007234          157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       157 ~~~-~~v~~l~~spdg~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s  216 (612)
                      +.. ...+.+.+.++|.+.++..                   |.|+-+|.  ++. ..+...-...+.++|+||++.++.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEE
Confidence            322 3688999999999877753                   34544554  332 222222345689999999998888


Q ss_pred             EEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCC-CCcEEEEEecCC-cEEEEE
Q 007234          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETG-VCYIWY  280 (612)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s~dg-~i~iwd  280 (612)
                      +.+..+.|..|++..........++.   .......++..     + +|++.+++..+| .|..|+
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD-----~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVD-----PVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEEC-----TTTCCEEEEEESCHHHHHSCC
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEe-----CCCCcEEEEecCCceEEEEEC
Confidence            77678899999987432221111221   13344555564     6 477666555442 444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.05  E-value=0.058  Score=58.38  Aligned_cols=196  Identities=11%  Similarity=-0.018  Sum_probs=108.7

Q ss_pred             eEEEEcCCCCEEEEEeC-CCcEEEEECCCCcE-EEEeeccCCccccccccccccccccccceeEEEeeecccccccccCC
Q 007234            9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (612)
Q Consensus         9 l~~~fspdg~~las~s~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (612)
                      +.++|++.+..|..+.. .++|..++...... ...+.....                ....-.+.|.  .        +
T Consensus        43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~----------------~P~GlAvD~~--~--------~   96 (619)
T 3s94_A           43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL----------------SPDGLACDWL--G--------E   96 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCS----------------CEEEEEEETT--T--------T
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCC----------------CcCeEEEEec--C--------C
Confidence            35689987666655543 57788888765432 112211001                1112222222  1        3


Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      .+.++-...+.|.+.++...... .+....-....++++.|.+..|+.+..  .+.|...++............-.....
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  175 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEE-EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence            44455555677999998765432 232234456789999997666665543  467777787543333333334456899


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      |++++++..|+.+.   +.|..+|+..........+.-.....+++..+  .++.+....+.|...|..+++
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence            99999877777766   68999998765432222211122235566544  556555456778888876664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.01  E-value=0.21  Score=49.78  Aligned_cols=199  Identities=13%  Similarity=0.086  Sum_probs=98.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++|.|||+++++ ..+|.|+++| .+|+  ..+....  +    +..    +  ......+++.+.-..      +..|
T Consensus        33 ~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~l   90 (354)
T 3a9g_A           33 SIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSWV   90 (354)
T ss_dssp             EEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCEE
T ss_pred             EEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCEE
Confidence            5599999985554 5569999997 4554  2222110  0    000    0  012233444432110      2234


Q ss_pred             EEEEC----C----CcEEEEEcCCC-------eEEEE-eccCCCCCeEEEEEecCCCEEEEEec-------------CCc
Q 007234           90 VLGTG----G----GDVLALAVSAG-------QLKWR-LSDCHPGGVSAISFATHGSCIYSAGA-------------DGM  140 (612)
Q Consensus        90 ~~gs~----~----g~I~vwd~~~~-------~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~s~-------------dg~  140 (612)
                      +++..    +    +.|..|+...+       +.+.. +..........+.|.|||.++++.+.             .|.
T Consensus        91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~  170 (354)
T 3a9g_A           91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK  170 (354)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred             EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence            44332    2    45777776654       11111 21111112467999999986666432             246


Q ss_pred             EEEEECCCCc--------eeEEEecCCCCeeEEEECC-CCCEEEEeCC-----eEEEEEcCC----------------Ce
Q 007234          141 VCEIDPLTGS--------LLGKFRASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSD----------------HK  190 (612)
Q Consensus       141 v~iwd~~~~~--------~~~~~~~~~~~v~~l~~sp-dg~~l~~~~g-----~i~lwd~~~----------------~~  190 (612)
                      |..++.. ++        ....+.........++|+| +|+++++-.+     .|.+.....                ..
T Consensus       171 I~ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          171 ILRVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             EEEECTT-SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             EEEEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence            6666654 22        1122222223457899999 6766655432     344432110                01


Q ss_pred             eEEEEecCCCCEEEEEEe-------eCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          191 KMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       191 ~~~~~~~h~~~v~~l~~s-------p~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ++..+.........+.|.       .+|.++++. ...+.|...++...
T Consensus       250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN  297 (354)
T ss_dssp             CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred             CEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence            223331122356788884       467655554 45677888887653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.01  E-value=0.092  Score=52.87  Aligned_cols=148  Identities=13%  Similarity=0.190  Sum_probs=95.6

Q ss_pred             ecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCe----------
Q 007234          126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK----------  190 (612)
Q Consensus       126 sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~----------  190 (612)
                      +.+|..++.+ .++.||+-++......+.++..    ...+..+..+|+|++||..+ ..|.|..+..+.          
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            3455556655 4577887787755555555554    22678899999999999888 899999886321          


Q ss_pred             --eEEEEec------CCCCEEEEEEeeC---CcEEEEEEcCCCeEEEEEcCCCccccc-----eeeEeecCCceeEEeEE
Q 007234          191 --KMQKFSG------HPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRC  254 (612)
Q Consensus       191 --~~~~~~~------h~~~v~~l~~sp~---~~~l~s~s~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~  254 (612)
                        ..+.+.-      ...+|..+.|+|-   +..|++-. .|+.|++||+........     ...+........+..++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence              1223332      3578999999985   44677776 699999999987432211     01122222234556777


Q ss_pred             ecCCccCCCCcEEEEEe--cCCcEEEEE
Q 007234          255 IDNGGVDDAGLYVLAIS--ETGVCYIWY  280 (612)
Q Consensus       255 ~~~~~~~~~~~~l~t~s--~dg~i~iwd  280 (612)
                      |.     .+|-.|...+  .+|.|+-..
T Consensus       187 Fg-----~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          187 FS-----KDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EC-----TTSSCEEEEECTTSCEEEEES
T ss_pred             Ec-----CCCcEEEEEecCCCCCEEEEC
Confidence            87     5666666655  777776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.99  E-value=0.26  Score=49.09  Aligned_cols=198  Identities=10%  Similarity=0.138  Sum_probs=96.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .++|.|||+++++ ..+|.|++++  +++.. .+....  +    +...      ......+++.+.-..      +..|
T Consensus        35 ~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~-~~~~~~--v----~~~g------~~~p~gia~~pdf~~------~g~l   92 (352)
T 2ism_A           35 ALAFLPDGGMLIA-ERPGRIRLFR--EGRLS-TYAELS--V----YHRG------ESGLLGLALHPRFPQ------EPYV   92 (352)
T ss_dssp             EEEECTTSCEEEE-ETTTEEEEEE--TTEEE-EEEECC--C----CCST------TCSEEEEEECTTTTT------SCEE
T ss_pred             EEEEcCCCeEEEE-eCCCeEEEEE--CCCcc-Eeecce--E----eecC------CCCceeEEECCCCCC------CCEE
Confidence            5599999996554 5679999998  45422 121110  0    0000      112234444432110      2334


Q ss_pred             EEEEC-C-----CcEEEEEcCCCe-----EEEE-ec--cCCCCCeEEEEEecCCCEEEEEec-------------CCcEE
Q 007234           90 VLGTG-G-----GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMVC  142 (612)
Q Consensus        90 ~~gs~-~-----g~I~vwd~~~~~-----~~~~-~~--~~h~~~V~~l~~sp~~~~l~s~s~-------------dg~v~  142 (612)
                      +++.. .     +.|..|+...+.     .+.. +.  .+.......++|.|+|.+.++.+.             .|.|.
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~  172 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL  172 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence            44333 2     557788876442     1211 22  111122368999999976555432             25676


Q ss_pred             EEECCCC------------ceeEEEecCCCCeeEEEECC-CCCEEEEeC--CeE------EEEEcCCCe-----------
Q 007234          143 EIDPLTG------------SLLGKFRASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK-----------  190 (612)
Q Consensus       143 iwd~~~~------------~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~--g~i------~lwd~~~~~-----------  190 (612)
                      .+|....            .....+.........++|+| +|++.++-.  +.+      .+.-+..+.           
T Consensus       173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~  252 (352)
T 2ism_A          173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG  252 (352)
T ss_dssp             EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred             EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence            6765420            11112221223357889999 566555433  231      122222221           


Q ss_pred             -------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          191 -------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       191 -------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                             ++..+. +......++| .+|..+++ ....+.|...++...
T Consensus       253 ~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~-~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          253 NDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVA-GLRGQALLRLVLEGE  298 (352)
T ss_dssp             CCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEE-ETTTTEEEEEEEEEE
T ss_pred             CCCCCcCCeEecC-CCCCCcceEE-ECCEEEEE-ECCCCEEEEEEECCC
Confidence                   222332 2234567788 56765554 345677777776643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.98  E-value=0.085  Score=52.04  Aligned_cols=110  Identities=12%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCCeeEEEECCCCCEEEEeC-CeEEEEEcCCC
Q 007234          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDH  189 (612)
Q Consensus       115 ~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~  189 (612)
                      .....+..+.+.+++..+ .++.+|.++..+...++.-..+...    ...+.++.+.+++.+++++. |.+ .+..+.+
T Consensus       202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG  279 (327)
T 2xbg_A          202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG  279 (327)
T ss_dssp             CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred             CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence            355678999999988654 5557888877753334333222211    23588999999999888887 766 4455556


Q ss_pred             eeEEEEec---CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          190 KKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       190 ~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      +.-..+..   +...+.++.|.+++. +++++ .+|.|.-++
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~~~~  319 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILLRYV  319 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEEEEC
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEEEEc
Confidence            54444432   345678899987766 44555 588776655

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.97  E-value=0.35  Score=48.01  Aligned_cols=129  Identities=12%  Similarity=0.095  Sum_probs=78.6

Q ss_pred             CcEEEEEcCCC--eE--EEEeccCCCCCeEEEEEecCCCEEEEEe-----------------cCCcEEEEECCCCceeEE
Q 007234           96 GDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        96 g~I~vwd~~~~--~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s-----------------~dg~v~iwd~~~~~~~~~  154 (612)
                      ..|.+|++..+  ..  +..+....-...+++.+.++|.+.++..                 ..|.|..+|.  ++ +..
T Consensus       139 s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~  215 (355)
T 3sre_A          139 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRV  215 (355)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEE
T ss_pred             CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEE
Confidence            44777776543  22  2233222234678999999998666653                 1245666665  33 233


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCC-Cee--EEEEecCCCCEEEEEEee-CCcEEEEEEcCC-CeEEE
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAVGE-RYIAL  226 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d-~~i~v  226 (612)
                      +...-...+.++|+||++.|+.+.   +.|+.|++.. ++.  .+.+ ...+....+++.+ +|++.+++. .+ +.|..
T Consensus       216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~-~~g~~v~~  293 (355)
T 3sre_A          216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH-PNGMRIFF  293 (355)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE-SCHHHHHS
T ss_pred             eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec-CCceEEEE
Confidence            332334578999999999888876   7999999863 322  2334 2345667889998 588776554 34 23444


Q ss_pred             EEc
Q 007234          227 WRT  229 (612)
Q Consensus       227 wd~  229 (612)
                      |+.
T Consensus       294 ~~P  296 (355)
T 3sre_A          294 YDA  296 (355)
T ss_dssp             CCT
T ss_pred             ECC
Confidence            443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.034  Score=57.88  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=91.0

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccC--CCCCeEEEEE-------ecCCCEEEEEecCC-------cEEEEECCC-C
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-G  149 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~-------sp~~~~l~s~s~dg-------~v~iwd~~~-~  149 (612)
                      .++++....+.|++.|+.++........+  .......++|       +++|++|+.+...+       .|.+++... +
T Consensus       153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G  232 (496)
T 3kya_A          153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG  232 (496)
T ss_dssp             EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred             EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence            34444444466999999988876433221  2235899999       99999777776554       266776443 2


Q ss_pred             cee-----EEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcC-------CCee-----------EEEE-e-cCCCC
Q 007234          150 SLL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQKF-S-GHPGA  201 (612)
Q Consensus       150 ~~~-----~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~-------~~~~-----------~~~~-~-~h~~~  201 (612)
                      ...     ..+... .....++++|++..|+.+.   +.|+.+|+.       ++..           ...+ . +....
T Consensus       233 ~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~  311 (496)
T 3kya_A          233 TFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW  311 (496)
T ss_dssp             CCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred             ceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence            221     233222 2456789999655555544   789999997       5543           2222 1 22344


Q ss_pred             EEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       202 v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ...++|+|+|++|+.+-.....|+.++...
T Consensus       312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            578999999997666655677888877644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.83  E-value=0.46  Score=55.19  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=86.7

Q ss_pred             CcEEEEEE----------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        86 ~~~l~~gs----------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                      ..++++|+          ..|.|++|++..++..........++|++++-- +| +|++| ..++|++|++...+.++.-
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~  920 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE  920 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence            57899988          346799999986654333333456889998744 45 44444 4578999999766544411


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEE--EEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~l--wd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      ..+-..+..+.....+.++++|+  ..|.+  |+...++....- .-+...++++.|-.++. ++.+ ..+|.+.+....
T Consensus       921 ~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t-~l~a-D~~gNl~vl~~~  998 (1158)
T 3ei3_A          921 CNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDN-FLGA-ENAFNLFVCQKD  998 (1158)
T ss_dssp             EEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTE-EEEE-ETTSEEEEEEEC
T ss_pred             eeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCc-EEEE-cCCCcEEEEecC
Confidence            11111233333333578899988  45544  555455433222 23456788999887764 4444 478999988765


Q ss_pred             C
Q 007234          231 G  231 (612)
Q Consensus       231 ~  231 (612)
                      .
T Consensus       999 ~  999 (1158)
T 3ei3_A          999 S  999 (1158)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.74  E-value=0.14  Score=49.96  Aligned_cols=183  Identities=7%  Similarity=-0.003  Sum_probs=90.9

Q ss_pred             CcEEEEEEC----C-----CcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCc
Q 007234           86 SSLLVLGTG----G-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~----~-----g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~  150 (612)
                      +.+++.|+.    +     ..+.+||+.+++-...-. ......-..+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            556666655    2     458999998876432110 101111122222  56666666543     468889987764


Q ss_pred             eeEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       151 ~~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      -...  +........++.+  ++++++.|+       ..+.+||+.+.+-...  +....... +++. -+++.++.+|.
T Consensus       149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~  224 (308)
T 1zgk_A          149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCV-LHNCIYAAGGY  224 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCB
T ss_pred             EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEE-ECCEEEEEeCC
Confidence            3221  1111222223333  567777765       3689999988754221  11111111 2222 26666666653


Q ss_pred             C----CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234          220 G----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (612)
Q Consensus       220 ~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~  284 (612)
                      .    -..+.+||+.+..-.   .+..+..+.....++.       -++++++.|+.+     ..+.+||..+.
T Consensus       225 ~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETWT---FVAPMKHRRSALGITV-------HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCccceEEEEeCCCCcEE---ECCCCCCCccceEEEE-------ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            2    145888998876432   1111211111112222       245666666643     35677776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.72  E-value=0.25  Score=48.22  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=72.5

Q ss_pred             CcEEEEEEC-----C------CcEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEecC--------CcEEEEE
Q 007234           86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGAD--------GMVCEID  145 (612)
Q Consensus        86 ~~~l~~gs~-----~------g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~d--------g~v~iwd  145 (612)
                      +.+++.|+.     .      ..+.+||+.+++-.. +.......- .+++.. +++.++.|+.+        ..+.+||
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d  123 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYD  123 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEEC
Confidence            667777773     1      127889998876431 111011110 112222 56666666632        4588999


Q ss_pred             CCCCceeE--EEecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          146 PLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       146 ~~~~~~~~--~~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      ..+.+-..  .+....... +++. -++++++.|+        ..+.+||..+.+-...-..........+..-+++.++
T Consensus       124 ~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  201 (315)
T 4asc_A          124 RLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV  201 (315)
T ss_dssp             TTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             CCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEE
Confidence            88764322  111111122 2222 3566766665        3699999988753221111111111112223677777


Q ss_pred             EEEcCCC----eEEEEEcCCCc
Q 007234          216 SSAVGER----YIALWRTDGVK  233 (612)
Q Consensus       216 s~s~~d~----~i~vwd~~~~~  233 (612)
                      .+|..+.    .+.+||+.+..
T Consensus       202 ~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          202 AAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEECSSSEEEEEEEEETTTTE
T ss_pred             EeccCCCCccceEEEEECCCCe
Confidence            7764222    57888887764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.62  E-value=0.21  Score=48.24  Aligned_cols=145  Identities=12%  Similarity=0.057  Sum_probs=75.1

Q ss_pred             CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEECCCCceeEE-
Q 007234           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLGK-  154 (612)
Q Consensus        86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~v~iwd~~~~~~~~~-  154 (612)
                      +.+++.|+.++     .+.+||+.+++-...-.......-.++.. -+++.++.|+.+     ..+.+||+.+.+-... 
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            56677776543     48999998876432111111111112222 266677777654     4688999887654322 


Q ss_pred             -EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC----C
Q 007234          155 -FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----R  222 (612)
Q Consensus       155 -~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d----~  222 (612)
                       +........++.+  ++++++.|+       ..+.+||+.+.+-...-..........+..-+++.++.+|..+    .
T Consensus       192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~  269 (301)
T 2vpj_A          192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS  269 (301)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEE
T ss_pred             CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccc
Confidence             1111112222333  567777765       3699999988764322111111111112223666666665321    3


Q ss_pred             eEEEEEcCCCc
Q 007234          223 YIALWRTDGVK  233 (612)
Q Consensus       223 ~i~vwd~~~~~  233 (612)
                      .+.+||+.+.+
T Consensus       270 ~v~~yd~~~~~  280 (301)
T 2vpj_A          270 SIECYDPIIDS  280 (301)
T ss_dssp             EEEEEETTTTE
T ss_pred             cEEEEcCCCCe
Confidence            57788887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.46  E-value=0.89  Score=45.86  Aligned_cols=239  Identities=13%  Similarity=0.121  Sum_probs=141.7

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      |+..=+.-.+|..+.+|.-. ..++.|+|+++.+.+..+.-                   ..++.--.|.+.+       
T Consensus        65 pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-------------------~e~VvfWkWis~~-------  117 (494)
T 1bpo_A           65 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN-------  117 (494)
T ss_dssp             ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEEEETT-------
T ss_pred             ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-------------------CCCceEEEecCCC-------
Confidence            33333445788888888765 67899999999988877642                   2245566777753       


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe-------cCCcEEEEECCCCceeE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG  153 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s-------~dg~v~iwd~~~~~~~~  153 (612)
                         .|+..+ +..|+-|++.........++.|    ...|..-..+++.++++..|       -.|.+.+|..+.+ .-+
T Consensus       118 ---~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ  192 (494)
T 1bpo_A          118 ---TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ  192 (494)
T ss_dssp             ---EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEE
T ss_pred             ---eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccc
Confidence               344433 4569999997644333443444    34677777888999876544       2467889987654 345


Q ss_pred             EEecCCCCeeEEEECCC---CCEEEEeC-----CeEEEEEcCCC--------e-eEEEEe---cCCCCEEEEEEeeCCcE
Q 007234          154 KFRASTKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH--------K-KMQKFS---GHPGAVRFMTFSDNGKY  213 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spd---g~~l~~~~-----g~i~lwd~~~~--------~-~~~~~~---~h~~~v~~l~~sp~~~~  213 (612)
                      .+.+|......+.+..+   ..+++.+.     +.+++.++...        + .+..+-   ....-.-++..++.-..
T Consensus       193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv  272 (494)
T 1bpo_A          193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV  272 (494)
T ss_dssp             EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred             hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence            56776655544444321   12333332     68899888532        1 111111   11233456777876666


Q ss_pred             EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcce
Q 007234          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      ++... .-|.+.+||+.++...     +...-....+-..+..     ....-+++....|.|.--.++....
T Consensus       273 iyviT-K~G~i~lyDleTgt~i-----~~nrIs~~~iF~t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          273 VFLIT-KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEEEE-TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EEEEe-cCceEEEEecccceee-----eeecccCCceEEeccc-----CCCCcEEEEccCceEEEEEEccccc
Confidence            66666 6899999999999744     3333222222222222     3344556666777776665554444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.02  Score=56.49  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccC-CccccccccccccccccccceeEEEeeecccccccccCCcEEEEE-ECC
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGG   95 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~g-s~~   95 (612)
                      ..++.++.||.|.-+|..+|+...+++... .+...  ...+      ..        +.        ++..++.. +.|
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~--~~~~------~~--------~~--------~~~~~vv~p~~d   66 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE--IQEP------SR--------LE--------TYETLIIEPFGD   66 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE--CCCS------CT--------TT--------SSEEEEECCSTT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE--ecCC------cc--------cc--------CCcEEEEEECCC
Confidence            467889999999999999999999886430 01000  0000      00        00        02334443 689


Q ss_pred             CcEEEEEcCCCeEEEEeccC---CCCCeEE---EEE-----ecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           96 GDVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~---h~~~V~~---l~~-----sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      |.|..++..+|...+.+...   ..+++..   ...     ...+..+++++.+|.+...|..+|+.+..+...
T Consensus        67 G~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           67 GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             CEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            99999999988765544211   1222221   000     013557899999999999999999999988743

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.35  E-value=0.7  Score=44.97  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=72.0

Q ss_pred             CcEEEEEEC----CC-------cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-------CcEEEEECC
Q 007234           86 SSLLVLGTG----GG-------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPL  147 (612)
Q Consensus        86 ~~~l~~gs~----~g-------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-------g~v~iwd~~  147 (612)
                      +.+++.|+.    ++       .+.+||+.+++-...-.......-.+++.. +++.++.|+.+       ..+.+||..
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~  135 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPV  135 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETT
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCC
Confidence            567777763    12       177899888765321100011111122222 56667777654       357888987


Q ss_pred             CCceeEE--EecCCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEE
Q 007234          148 TGSLLGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       148 ~~~~~~~--~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      +.+-...  +....... +++. .++++++.|+        ..+.+||+.+.+-...  +...... .+++ .-+++.++
T Consensus       136 ~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv  211 (318)
T 2woz_A          136 AAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVA-IHKGKIVI  211 (318)
T ss_dssp             TTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEE
T ss_pred             CCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEE-EECCEEEE
Confidence            7643322  11111111 2222 4677777765        2599999988754322  1111111 1222 23567667


Q ss_pred             EEEcCC----CeEEEEEcCCCc
Q 007234          216 SSAVGE----RYIALWRTDGVK  233 (612)
Q Consensus       216 s~s~~d----~~i~vwd~~~~~  233 (612)
                      .+|..+    ..+.+||+.+..
T Consensus       212 ~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          212 AGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEETTEEEEEEEEEETTTCC
T ss_pred             EcCcCCCCccceEEEEECCCCe
Confidence            766322    246788887764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.35  E-value=0.23  Score=48.20  Aligned_cols=143  Identities=10%  Similarity=0.019  Sum_probs=74.0

Q ss_pred             CcEEEEEECC------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---------CCcEEEEECCCCc
Q 007234           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~~------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---------dg~v~iwd~~~~~  150 (612)
                      +.+++.|+.+      ..+.+||+.+++-...-.......-.++.. -+++.++.|+.         -..+.+||+.+.+
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            5667777654      349999999886432211001111112222 25666666653         3458899988774


Q ss_pred             eeEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       151 ~~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      -...  +.........+.+  ++++++.|+       ..+.+||+.+.+-...  ++........+.+  +++.++.+|.
T Consensus       181 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  256 (306)
T 3ii7_A          181 WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGF  256 (306)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECB
T ss_pred             EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCc
Confidence            3322  1111112222222  567777765       3689999988753221  1111111122222  5666666652


Q ss_pred             C----CCeEEEEEcCCCc
Q 007234          220 G----ERYIALWRTDGVK  233 (612)
Q Consensus       220 ~----d~~i~vwd~~~~~  233 (612)
                      .    -..+.+||+.+.+
T Consensus       257 ~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          257 QGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CSSSBCCEEEEEETTTTE
T ss_pred             CCCeeeeeEEEEcCCCCe
Confidence            1    1457788877764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.035  Score=54.80  Aligned_cols=196  Identities=10%  Similarity=0.037  Sum_probs=105.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEE--ecCCcEEEEECCCCceeEEEecC---
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSA--GADGMVCEIDPLTGSLLGKFRAS---  158 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~---  158 (612)
                      +.++++++.||.|.-+|..+|+..+++......++....-.  +.+..++.+  +.||.|..+|..+|.....+...   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            56899999999999999999999999854321233322100  112234443  58999999999888655444321   


Q ss_pred             -CCCeeE---EEE-C----CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCC--CC-----EEEEEEe-----eCCcEEE
Q 007234          159 -TKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL  215 (612)
Q Consensus       159 -~~~v~~---l~~-s----pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~~-----v~~l~~s-----p~~~~l~  215 (612)
                       ..++..   ..+ .    ..+..+++|+  |.++..|+++|+.+.++....  +.     ..|....     ..+..++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence             122221   001 0    0344566666  899999999999998886321  11     1111110     1123455


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEee-cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .+. .+..+.+.+ ++++ . ....+.. .........  ...-..+.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus       170 ig~-~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~--~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGK-TIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPL--ALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEE-EEEECEECC-TTSC-C-CCCEEEEEECCTTTHHH--HTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             Eec-ceEEEEEEC-CCCC-e-EEEeccccccccccccc--ccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            554 466666655 3332 1 1111100 000000000  000000134565 557889999999999988765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.18  E-value=0.28  Score=47.44  Aligned_cols=143  Identities=11%  Similarity=0.064  Sum_probs=74.4

Q ss_pred             CcEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC-------CcEEEEECCCCceeE
Q 007234           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d-------g~v~iwd~~~~~~~~  153 (612)
                      +.+++.|+.++     .+.+||+.+++-...-.......-.+++. -+++.++.|+.+       ..+.+||+.+.+-..
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            56777777654     38899998876532211111111112222 256666666542       458899988764332


Q ss_pred             E--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCcEEEEEEcCCC-
Q 007234          154 K--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAVGER-  222 (612)
Q Consensus       154 ~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~~d~-  222 (612)
                      .  +........++.+  ++++++.|+       ..+.+||+.+.+-.. +.....+ ...-...-+++.++.+|. ++ 
T Consensus       188 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~-~~~  263 (302)
T 2xn4_A          188 IAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGD-DGS  263 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCB-CSS
T ss_pred             CCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCc-CCC
Confidence            2  2211122222222  567777775       379999998875432 2211111 111122236666666653 32 


Q ss_pred             ----eEEEEEcCCCc
Q 007234          223 ----YIALWRTDGVK  233 (612)
Q Consensus       223 ----~i~vwd~~~~~  233 (612)
                          .+.+||+.+..
T Consensus       264 ~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          264 CNLASVEYYNPTTDK  278 (302)
T ss_dssp             SBCCCEEEEETTTTE
T ss_pred             cccccEEEEcCCCCe
Confidence                47888887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.09  E-value=1.1  Score=44.39  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=19.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTL   35 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~   35 (612)
                      .++|.|||++|..+...|.|++++..
T Consensus        22 ~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           22 ALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             EEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            55999999934445567999999853

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.02  E-value=0.27  Score=56.97  Aligned_cols=194  Identities=11%  Similarity=0.109  Sum_probs=114.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCC-ceeEEEecC----C
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTG-SLLGKFRAS----T  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~-~~~~~~~~~----~  159 (612)
                      ...|++-. ..++.|||+.+...+..+.  ...+|.--.|-.+... |+|   +..|+-|++... .+++.|..|    .
T Consensus        77 ~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~  150 (1630)
T 1xi4_A           77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAG  150 (1630)
T ss_pred             cceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhccc
Confidence            34444443 6669999999888775553  3456666677544433 333   456999999642 444444444    3


Q ss_pred             CCeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe--eCCcEEEEEEc---CCCeEE
Q 007234          160 KGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIA  225 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~s~s~---~d~~i~  225 (612)
                      ..|..-..++++++++..+         |.+.+|.++.+. -+.+.||.+.-..+...  +....+++-+.   ..+.+.
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh  229 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence            4677778899999987543         789999886543 34556776554443332  22222333221   125788


Q ss_pred             EEEcCCC---ccc-cce---eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          226 LWRTDGV---KKQ-SAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       226 vwd~~~~---~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                      |-++...   ... ...   ..+..+....+.-....+     +.-..+...+.-|.|++||+.|+..+....
T Consensus       230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence            8887543   111 000   011111223333334444     666778888999999999999998876443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.01  E-value=0.99  Score=44.66  Aligned_cols=190  Identities=11%  Similarity=-0.011  Sum_probs=89.8

Q ss_pred             CcEEEEEEC-C---------CcEEEEEcCCCeEEEEeccC-CCCCeEEEEEecCCCEEEEEecC----------------
Q 007234           86 SSLLVLGTG-G---------GDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGAD----------------  138 (612)
Q Consensus        86 ~~~l~~gs~-~---------g~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~s~d----------------  138 (612)
                      +.+++.|+. +         .++.+||+.+++-...-... ....-.++.. .+++.++.|+.+                
T Consensus        66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            556666665 1         45999999987653211111 1111112222 467777777754                


Q ss_pred             -----------------------CcEEEEECCCCceeEE--EecCCCCeeEEEECCCCCEEEEeC--------CeEEEEE
Q 007234          139 -----------------------GMVCEIDPLTGSLLGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFN  185 (612)
Q Consensus       139 -----------------------g~v~iwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~~~~--------g~i~lwd  185 (612)
                                             ..+.+||..+.+-...  +......-.+++.. ++++++.|+        ..+..||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d  223 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELD  223 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEE
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEE
Confidence                                   5789999887653332  22111111233333 566666665        2577788


Q ss_pred             c--CCCeeEE--EEecCCCCEEEEEEeeCCcEEEEEEcCC---------------------CeEEEEEcCCCccccceee
Q 007234          186 C--SDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE---------------------RYIALWRTDGVKKQSASCV  240 (612)
Q Consensus       186 ~--~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~~d---------------------~~i~vwd~~~~~~~~~~~~  240 (612)
                      +  .+.+-..  .+..........+...+++.++.+|...                     ..+.+||+.+..-.   .+
T Consensus       224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~~  300 (357)
T 2uvk_A          224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---KS  300 (357)
T ss_dssp             CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---EE
T ss_pred             ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---eC
Confidence            7  4443221  1111111111123334666666665211                     24678888766432   22


Q ss_pred             EeecCCceeEEeEEecCCccCCCCcEEEEEecCC------cEEEEECCCccee
Q 007234          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG------VCYIWYGQNIEEL  287 (612)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg------~i~iwd~~~~~~~  287 (612)
                      ..+..+-....++.       -+++.++.|+.++      .|.++++++++.+
T Consensus       301 ~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          301 GELSQGRAYGVSLP-------WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EECSSCCBSSEEEE-------ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             CCCCCCcccceeEE-------eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            22222222112222       3567777777542      3555677766554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.89  E-value=3.7  Score=47.65  Aligned_cols=177  Identities=11%  Similarity=0.109  Sum_probs=102.4

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEE---ecC-CCEEEEEe----------cCCcEEEEECCCCceeEEEe-cCCC
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISF---ATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFR-ASTK  160 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~---sp~-~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~-~~~~  160 (612)
                      +.|++.|..+.+.+..+.-.....+.+++.   ..+ ..+++.|.          ..|.|.++++..++.....+ ..++
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            348899998888776554334455666553   222 35777775          34789999987544322221 2356


Q ss_pred             CeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      +|++++-- +|+++++.+..|++|++...+.++ ....+. .|..+.....+.+++.+. --+.|.++..+.....  ..
T Consensus       887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD-~~~Sv~~~~y~~~~~~--L~  961 (1158)
T 3ei3_A          887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGD-LMRSVLLLAYKPMEGN--FE  961 (1158)
T ss_dssp             CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEE-SSBCEEEEEEETTTTE--EE
T ss_pred             cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEE-hhheEEEEEEEcCCCe--EE
Confidence            88888755 466666666899999998765444 222122 233333334467787775 3455665544322111  11


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCC
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~  283 (612)
                      .+.-+.....+.++.+-     .+ ..++.+..+|.|.++....
T Consensus       962 ~~a~D~~~~~vta~~~l-----d~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          962 EIARDFNPNWMSAVEIL-----DD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEECCSCBCEEEEEEE-----ET-TEEEEEETTSEEEEEEECT
T ss_pred             EEEeecccccEEEEEEE-----cc-CcEEEEcCCCcEEEEecCC
Confidence            22223334444455553     23 4678889999999987543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.74  E-value=0.083  Score=53.16  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus         5 ~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .|+.+  ..||+|++||..+ +..|.|-.+-.+.....-.+....+....|...-........+..+.|.|-...     
T Consensus        67 ~i~ql--vlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~-----  138 (452)
T 3pbp_A           67 DTFHV--ISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR-----  138 (452)
T ss_dssp             TTCEE--EECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-----
T ss_pred             ceeEE--EECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-----
Confidence            56666  9999999999886 557888887633211100000011222223322111112456788899988765     


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEE-EEec--------cCCCCCeEEEEEecCCCEEEEEe--cCCcEEEEE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLK-WRLS--------DCHPGGVSAISFATHGSCIYSAG--ADGMVCEID  145 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~--------~~h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd  145 (612)
                       +..|++-+.|+.|++||+...... ..+.        ......|.+++|.+++-.|+..+  ..|.|+..-
T Consensus       139 -ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          139 -DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             -GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             -CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence             789999999999999999863211 1111        12235688889988776677655  667776554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.62  E-value=2.6  Score=43.90  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             CCeeEEEECCCCCEEEEeC---CeEEEEEcCCC------ee-------EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH------KK-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~------~~-------~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      .....+.++|||+++++++   .++.++|++..      +.       +.+..- .......+|.++| ..+++-.-|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCC-ceEeeeeecce
Confidence            3457789999999999988   69999998742      11       223332 2345678999999 56666667999


Q ss_pred             EEEEEcCCC------ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          224 IALWRTDGV------KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       224 i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      |.-|++...      +.. ...+..+.-+-..-.....-.....++|++|++.+.
T Consensus       401 vvkWni~~a~~~~~g~~~-~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKV-NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EEEEeccHHHHHhcCccC-CeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            999998653      211 123334443333333333222333588999988754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.50  E-value=0.76  Score=44.69  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             CcEEEEEECC-------CcEEEEEcCCCeEEEEeccCCCCCe--EEEEEecCCCEEEEEec------CCcEEEEECCCCc
Q 007234           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAGA------DGMVCEIDPLTGS  150 (612)
Q Consensus        86 ~~~l~~gs~~-------g~I~vwd~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~  150 (612)
                      +.+++.|+.+       ..+.+||+.+++-...- . -..+.  .++.. .+++.++.|+.      -..+.+||+.+.+
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-N-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-C-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-C-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            5677777754       23889999887654221 1 11111  11222 35666666653      2458999988765


Q ss_pred             eeEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCee
Q 007234          151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK  191 (612)
Q Consensus       151 ~~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~  191 (612)
                      -...  +........++.+  ++++++.|+       ..+.+||+.+.+-
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            3322  1111112222222  567777765       3688999987753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.49  E-value=0.74  Score=44.72  Aligned_cols=103  Identities=13%  Similarity=0.088  Sum_probs=55.0

Q ss_pred             CcEEEEEECC--------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-C-----CcEEEEECCCCce
Q 007234           86 SSLLVLGTGG--------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-D-----GMVCEIDPLTGSL  151 (612)
Q Consensus        86 ~~~l~~gs~~--------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-d-----g~v~iwd~~~~~~  151 (612)
                      +.+++.|+.+        ..+.+||+.+++-...-.......-.+++. -+++.++.|+. +     ..+.+||+.+.+-
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            5566666632        349999999876432110001111112222 35666677765 2     4689999887643


Q ss_pred             eEE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCee
Q 007234          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK  191 (612)
Q Consensus       152 ~~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~  191 (612)
                      ...  +........++.+  ++++++.|+       ..+.+||+.+.+-
T Consensus       178 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          178 KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            221  1111112222222  567777765       2689999988754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.28  E-value=0.66  Score=44.95  Aligned_cols=184  Identities=11%  Similarity=-0.035  Sum_probs=91.5

Q ss_pred             CcEEEEEECC----CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----C-----CcEEEEECCCCcee
Q 007234           86 SSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSLL  152 (612)
Q Consensus        86 ~~~l~~gs~~----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----d-----g~v~iwd~~~~~~~  152 (612)
                      +.+++.|+.+    ..+.+||+.+++-...-.......-.+++. -++..++.|+.    +     ..+.+||+.+.+-.
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            5667777643    348999998877542110000001112222 25666666665    2     46888998776432


Q ss_pred             EE--EecCCCCeeEEEECCCCCEEEEeC-------CeEEEEEcCCCeeEEE--EecCCCCEEEEEEeeCCcEEEEEEcC-
Q 007234          153 GK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG-  220 (612)
Q Consensus       153 ~~--~~~~~~~v~~l~~spdg~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~~-  220 (612)
                      ..  +.........+.+  ++++++.|+       ..+.+||..+.+-...  ++.....-..+.  -+++.++.+|.. 
T Consensus       104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~  179 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDG  179 (308)
T ss_dssp             ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred             ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCC
Confidence            21  1111222223333  677777765       3689999988754221  111111111222  256666666532 


Q ss_pred             ---CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC-----CcEEEEECCCc
Q 007234          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (612)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d-----g~i~iwd~~~~  284 (612)
                         -..+.+||+.+..-.   .+..+..+.....++.       -++++++.|+.+     ..+.+||+.+.
T Consensus       180 ~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          180 TNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCV-------LHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             SCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCcCceEEEEeCCCCeEe---eCCCCCCccccceEEE-------ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence               135888888776422   1111111111112222       245666666654     45778887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.24  E-value=0.93  Score=41.27  Aligned_cols=136  Identities=11%  Similarity=0.035  Sum_probs=78.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeE------EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce------eE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL------LG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~------~~  153 (612)
                      ..+|+....| +|+.=.+.++..      ..++-.+-=..+.+++|+|+|.+.++  .+|.++-.+..+.+.      -.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3455566666 666655555441      11221111246789999998875444  778887777655221      11


Q ss_pred             EEec-CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCee------EEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEE
Q 007234          154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (612)
Q Consensus       154 ~~~~-~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~------~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~  225 (612)
                      .+-. .-....++.|.|+|.+.++..|.|+-++..+...      -..+ .+-=..+..+.|.|+|.+.+..   |+.+.
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly  157 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY  157 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred             EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence            1110 1113578999999999999669998887633211      0111 1111457899999999865543   56654


Q ss_pred             EE
Q 007234          226 LW  227 (612)
Q Consensus       226 vw  227 (612)
                      -+
T Consensus       158 r~  159 (236)
T 1tl2_A          158 KA  159 (236)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.04  E-value=3  Score=41.23  Aligned_cols=129  Identities=13%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEe------ccCCCCCeEEEEEecC---CCEEEEEec--------CCcEEEEECCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT  148 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~------~~~h~~~V~~l~~sp~---~~~l~s~s~--------dg~v~iwd~~~  148 (612)
                      ++.++++...|.|++++.. +.....+      ..........++|+|+   +..|+.+..        ...|..|+...
T Consensus        29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~  107 (353)
T 2g8s_A           29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD  107 (353)
T ss_dssp             TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred             CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence            5535667778999999853 3321111      1112346789999996   555555532        23577776653


Q ss_pred             C--c--eeEE-EecC------CCCeeEEEECCCCCEEEEeC---------------CeEEEEEcCCCe------------
Q 007234          149 G--S--LLGK-FRAS------TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------  190 (612)
Q Consensus       149 ~--~--~~~~-~~~~------~~~v~~l~~spdg~~l~~~~---------------g~i~lwd~~~~~------------  190 (612)
                      +  +  .... +...      ......++|.|||.+.++.+               |.|.-+|....-            
T Consensus       108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~  187 (353)
T 2g8s_A          108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV  187 (353)
T ss_dssp             TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred             CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence            3  1  1121 2211      12246799999997666642               356666765320            


Q ss_pred             eEEEE-ecCCCCEEEEEEee-CCcEEEE
Q 007234          191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS  216 (612)
Q Consensus       191 ~~~~~-~~h~~~v~~l~~sp-~~~~l~s  216 (612)
                      ....+ .+|.. ...++|.| +|.++++
T Consensus       188 ~~~i~a~G~rn-p~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          188 RAEIWSYGIRN-PQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTEEEECCSE-EEEEEEETTTTEEEEE
T ss_pred             CccEEEEcCcC-ccceEEECCCCCEEEE
Confidence            11111 34443 57899999 6665444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.88  E-value=0.97  Score=52.54  Aligned_cols=193  Identities=13%  Similarity=0.154  Sum_probs=111.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      +.-.+|..+.+|.-. ..++.|+|+++...+..+.-                   ..++.--.|.+++          .|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis~~----------~l  119 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN----------TV  119 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecCCC----------ee
Confidence            334677777777654 56899999988776665431                   2344556676643          33


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCC----CCCeEEEEEecCCCEEEEEe-------cCCcEEEEECCCCceeEEEecC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      +..+ +..|..|++........++..|    ...|..-..+++.++++..|       -.|.+.+|.++.+ .-+.+.+|
T Consensus       120 ~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh  197 (1630)
T 1xi4_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (1630)
T ss_pred             EEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh
Confidence            4333 3569999997644433343444    35677777888888876544       3477888887544 23445555


Q ss_pred             CCCeeEEEEC--C-CCCEEEEeC-----CeEEEEEcCCC---e-e-----EEEEecC---CCCEEEEEEeeCCcEEEEEE
Q 007234          159 TKGISCMAVS--S-DGKMLATAA-----GQLKTFNCSDH---K-K-----MQKFSGH---PGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       159 ~~~v~~l~~s--p-dg~~l~~~~-----g~i~lwd~~~~---~-~-----~~~~~~h---~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ......+.+.  + ...+++.+.     +.++|.++...   . .     +..+...   ..-..++..++.-..++...
T Consensus       198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it  277 (1630)
T 1xi4_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (1630)
T ss_pred             HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe
Confidence            5544444332  1 122333222     58888887543   1 1     1111111   11223456666555555555


Q ss_pred             cCCCeEEEEEcCCCccc
Q 007234          219 VGERYIALWRTDGVKKQ  235 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~  235 (612)
                       .-|.+.++|+.++...
T Consensus       278 -k~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          278 -KYGYIHLYDLETGTCI  293 (1630)
T ss_pred             -cCceEEEEecccchhh
Confidence             6899999999998754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.81  E-value=3.5  Score=40.80  Aligned_cols=125  Identities=13%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             EEEEECCCcEEEEEcCCCe-EEEEec--cCCCCCeEEEEEecC---CCEEEEEec----C----CcEEEEECCCC--c--
Q 007234           89 LVLGTGGGDVLALAVSAGQ-LKWRLS--DCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S--  150 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~-~~~~~~--~~h~~~V~~l~~sp~---~~~l~s~s~----d----g~v~iwd~~~~--~--  150 (612)
                      ++++..+|.|++++ ..+. .+..+.  ........+++|+|+   +..|+.+..    +    ..|..|+....  .  
T Consensus        42 l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~  120 (354)
T 3a9g_A           42 YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK  120 (354)
T ss_dssp             EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred             EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence            67777789999997 3454 222211  112356899999997   556665543    3    56888886544  1  


Q ss_pred             ---ee-EEEecC-CCCeeEEEECCCCCEEEEeC---------------CeEEEEEcCCC---------eeEEEEecCCCC
Q 007234          151 ---LL-GKFRAS-TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSGHPGA  201 (612)
Q Consensus       151 ---~~-~~~~~~-~~~v~~l~~spdg~~l~~~~---------------g~i~lwd~~~~---------~~~~~~~~h~~~  201 (612)
                         .+ ..+... ......++|.|||.+.++.+               |.|.-++....         ..+. -.+|..+
T Consensus       121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rnp  199 (354)
T 3a9g_A          121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRNP  199 (354)
T ss_dssp             EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSCC
T ss_pred             ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCCc
Confidence               11 112211 12346799999998777642               34555555422         0111 2355544


Q ss_pred             EEEEEEee-CCcEEEE
Q 007234          202 VRFMTFSD-NGKYVLS  216 (612)
Q Consensus       202 v~~l~~sp-~~~~l~s  216 (612)
                       ..++|+| +|..+++
T Consensus       200 -~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          200 -QGIDWHRASGVMVAT  214 (354)
T ss_dssp             -CEEEECTTTCCEEEE
T ss_pred             -ceEEEeCCCCCEEEE
Confidence             5799999 6765554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.67  E-value=4.9  Score=41.89  Aligned_cols=257  Identities=10%  Similarity=0.074  Sum_probs=137.3

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEeeccCCccc-cccccccccccccccceeEEEeeec-cccc---ccccCCcEEEEEEC
Q 007234           20 FAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNRLEREHLSVDYTCMKWLSV-DRKK---KRKLGSSLLVLGTG   94 (612)
Q Consensus        20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~w~~~-~~~~---~~~~~~~~l~~gs~   94 (612)
                      |.||+..|.|+|+-+-+++.+..+........ .--|+.... .-+.. .....|-.. .+..   ..+..++++++-..
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk-~il~~-~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk  150 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESR-HIMGD-SAKFLNGDCHHPHISMTDGKYDGKYLFINDK  150 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHH-HHHGG-GGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHH-HHHhc-CCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence            56788899999999999999988754322110 000000000 00000 000111100 0000   00112677887775


Q ss_pred             CC-cEEEEEcCCCeEEEEeccCCCCCeEEEEEe--cCCCEEEEEec-------CCcEE---------E---EECCCCcee
Q 007234           95 GG-DVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMVC---------E---IDPLTGSLL  152 (612)
Q Consensus        95 ~g-~I~vwd~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~s~-------dg~v~---------i---wd~~~~~~~  152 (612)
                      .. .|-..++..-++-.-+.......+.+++|-  |+..+++.++.       ||...         +   .|..+.+..
T Consensus       151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~  230 (638)
T 3sbq_A          151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA  230 (638)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred             CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence            44 488888888777555545577889999996  78888888763       33321         1   122222211


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC-C----------------eEEEEEcC-------CCe-------eEEEEecCC--
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNCS-------DHK-------KMQKFSGHP--  199 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~-g----------------~i~lwd~~-------~~~-------~~~~~~~h~--  199 (612)
                      ..+.. .+....+...++|++.++.+ +                -+.++|++       .|+       -+..+.+..  
T Consensus       231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~  309 (638)
T 3sbq_A          231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD  309 (638)
T ss_dssp             EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred             EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence            11111 12233455577888877764 1                36666642       110       122232221  


Q ss_pred             -------------CCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc-------ccceeeEeecCCceeEEeEEecCCc
Q 007234          200 -------------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCVLAMEHPAVFMDCRCIDNGG  259 (612)
Q Consensus       200 -------------~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  259 (612)
                                   .....+.++|||++++.++--+.++.++|+.+...       ....++........-..-..|.   
T Consensus       310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd---  386 (638)
T 3sbq_A          310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD---  386 (638)
T ss_dssp             TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC---
T ss_pred             ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC---
Confidence                         22356789999999999987888999999875321       0011111111122223345565   


Q ss_pred             cCCCCcEEEEEecCCcEEEEECCCc
Q 007234          260 VDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       260 ~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                        ++|....+.-.|..|.-|++...
T Consensus       387 --~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          387 --GRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             --SSSEEEEEETTTTEEEEEEHHHH
T ss_pred             --CCCceEeeeeecceEEEEeccHH
Confidence              78855555557999999998654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.49  E-value=4.1  Score=40.13  Aligned_cols=30  Identities=20%  Similarity=0.134  Sum_probs=23.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~   39 (612)
                      .++|.|||+++++--..|+|++++..+++.
T Consensus        36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~   65 (347)
T 3das_A           36 GLAPLPGGDLLVSSRDEATITRVDAKTGRK   65 (347)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             EEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence            459999999777665589999998766654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.43  E-value=7.4  Score=42.89  Aligned_cols=178  Identities=13%  Similarity=0.135  Sum_probs=104.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe-----cCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~~~~  160 (612)
                      ...|.+|+.+| +..||..++.... ........|.++.. .+| .|+.++.+ -+..+|..+++.. .+.     ....
T Consensus        73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~  146 (758)
T 3ott_A           73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN  146 (758)
T ss_dssp             TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred             CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence            45678888765 7899998875432 11112335777754 344 57777666 5888998765533 331     1234


Q ss_pred             CeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecC------CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      .|.++...++|.+.+...+-+..+|..+++.. .+...      ...|.++...+++..|..+. . +-+..++..+++.
T Consensus       147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQI  223 (758)
T ss_dssp             CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEE
T ss_pred             eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeE
Confidence            68899988888887765566888898776542 22211      12488887777766544444 2 3577888776542


Q ss_pred             ccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      .   ....+  ....+..+...     .+|.+. .|+.+ -+.+++..+.
T Consensus       224 ~---~~~~l--~~~~i~~i~~d-----~~g~lW-igT~~-Gl~~~~~~~~  261 (758)
T 3ott_A          224 K---QTEAF--HNNSIKSLALD-----GNGDLL-AGTDN-GLYVYHNDTT  261 (758)
T ss_dssp             E---EEEEE--EEEEEEEEEEC-----TTCCEE-EEETT-EEEEECCTTS
T ss_pred             E---eccCC--CCCeEEEEEEc-----CCCCEE-EEeCC-ceeEEecCCC
Confidence            2   11111  12234444443     555544 44544 4777876654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.42  E-value=1.5  Score=43.38  Aligned_cols=98  Identities=12%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee--EEEe---cCCCCeeEEEECCC---CCEEEEeC--------CeE
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFR---ASTKGISCMAVSSD---GKMLATAA--------GQL  181 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~---~~~~~v~~l~~spd---g~~l~~~~--------g~i  181 (612)
                      ....+++|.|+|+ ++.+..+|.|++++  .++..  ..+.   ........|+++|+   +..|+++.        +.|
T Consensus        31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3568999999998 55556779999998  45421  1111   12347899999998   55554433        467


Q ss_pred             EEEEcCCCe-----e-EEEEe---cCCCCEEEEEEeeCCcEEEEEE
Q 007234          182 KTFNCSDHK-----K-MQKFS---GHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       182 ~lwd~~~~~-----~-~~~~~---~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ..|+...+.     . +..+.   +.......++|.|||.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            778876431     1 22233   1112235899999997666543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.28  E-value=5.6  Score=40.88  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=22.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~   39 (612)
                      .++|.|||+++++-...+.|++++..++..
T Consensus        31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~   60 (454)
T 1cru_A           31 ALLWGPDNQIWLTERATGKILRVNPESGSV   60 (454)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             EEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence            569999999777654445788888765654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.82  E-value=0.79  Score=41.75  Aligned_cols=92  Identities=12%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEE-E-----EeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCc------eeE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLK-W-----RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS------LLG  153 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~-~-----~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~------~~~  153 (612)
                      +.+.++  .||.|.-++..+...- +     .+-.+-=..+..|.|.|+|.+.+..  |+.++-+...++.      ...
T Consensus        99 G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~  174 (236)
T 1tl2_A           99 GYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT  174 (236)
T ss_dssp             SCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred             CCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence            555555  6699887776432111 0     1101111467999999999755444  8876554333221      111


Q ss_pred             EEe-cCCCCeeEEEECCCCCEEEEeCCeE
Q 007234          154 KFR-ASTKGISCMAVSSDGKMLATAAGQL  181 (612)
Q Consensus       154 ~~~-~~~~~v~~l~~spdg~~l~~~~g~i  181 (612)
                      .+- ..-....-+.|.|+|.+.++..|.+
T Consensus       175 ~~g~~g~~~yr~l~f~~~G~l~~v~~g~~  203 (236)
T 1tl2_A          175 KIGQGGWDTFKFLFFSSVGTLFGVQGGKF  203 (236)
T ss_dssp             EEESSSGGGEEEEEECTTSCEEEEETTEE
T ss_pred             eeccCCcceEEEEEECCCCcEEEEeCCeE
Confidence            111 1222445566888888777665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.38  E-value=1.7  Score=42.82  Aligned_cols=137  Identities=12%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCe-EEEEEecCCCEEEEEec------CCcEEEEEC--CCCceeE--EEecCCCCeeE
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGA------DGMVCEIDP--LTGSLLG--KFRASTKGISC  164 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~l~s~s~------dg~v~iwd~--~~~~~~~--~~~~~~~~v~~  164 (612)
                      ..+.+||+.+++-...-.......- .+++.. +++.++.|+.      ...+.++|+  .+.+-..  .+........+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4699999988764322111111111 223322 5556666653      345777876  3332211  11111111121


Q ss_pred             EEECCCCCEEEEeC-C-----------------------eEEEEEcCCCee--EEEEecCCCCEEEEEEeeCCcEEEEEE
Q 007234          165 MAVSSDGKMLATAA-G-----------------------QLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       165 l~~spdg~~l~~~~-g-----------------------~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      .+...++++++.|+ .                       .+.+||+.+.+-  +..++.....  ..+..-+++.++.+|
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEee
Confidence            12223566777665 1                       478899887643  3333222221  122345677777777


Q ss_pred             cCC-----CeEEEEEcCCCccc
Q 007234          219 VGE-----RYIALWRTDGVKKQ  235 (612)
Q Consensus       219 ~~d-----~~i~vwd~~~~~~~  235 (612)
                      ...     ..+.++++++++..
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eCCCCCEeeeEEEEEEcCcEeE
Confidence            321     13555577776643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.11  E-value=6.1  Score=43.13  Aligned_cols=148  Identities=8%  Similarity=0.005  Sum_probs=79.8

Q ss_pred             CcEEEEEECCC------cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC--cEEEEECCCCceeEEE--
Q 007234           86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF--  155 (612)
Q Consensus        86 ~~~l~~gs~~g------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~v~iwd~~~~~~~~~~--  155 (612)
                      +.+++.|+.++      ++.+||+.++.-...-.......-.+.+...+++.++.|+.++  .+.+||..+.+-...-  
T Consensus       452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~  531 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK  531 (695)
T ss_dssp             TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred             CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence            66777777543      4889999887543211000111112233324778888887654  6999998876532221  


Q ss_pred             ---ecCCCCeeEEEECCC-CCEEEEeC---------CeEEEEEcCCCee-----EEEEec---CCCCEEEEEEeeCCcEE
Q 007234          156 ---RASTKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       156 ---~~~~~~v~~l~~spd-g~~l~~~~---------g~i~lwd~~~~~~-----~~~~~~---h~~~v~~l~~sp~~~~l  214 (612)
                         ........++.+..+ +++++.|+         +.+.+||+.+.+.     ...+..   ....-.++....+++.+
T Consensus       532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred             CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence               112223344566655 66777765         2589999988761     222221   11111223334446666


Q ss_pred             EEEEcC-------CCeEEEEEcCCCc
Q 007234          215 LSSAVG-------ERYIALWRTDGVK  233 (612)
Q Consensus       215 ~s~s~~-------d~~i~vwd~~~~~  233 (612)
                      +.+|..       ...+.+||+.+..
T Consensus       612 v~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          612 IVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EECCccCCCCCCCCCeEEEEECCCCe
Confidence            666521       2357788877654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.92  E-value=3.5  Score=45.07  Aligned_cols=147  Identities=8%  Similarity=0.061  Sum_probs=80.3

Q ss_pred             CcEEEEEECC----CcEEEEEcCCCeEEEEe-c-----cCCCCCeEEEEEec-CCCEEEEEecC------CcEEEEECCC
Q 007234           86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S-----DCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLT  148 (612)
Q Consensus        86 ~~~l~~gs~~----g~I~vwd~~~~~~~~~~-~-----~~h~~~V~~l~~sp-~~~~l~s~s~d------g~v~iwd~~~  148 (612)
                      +.+++.|+.+    .++.+||+.+++-...- .     ......-.+++..+ +++.++.||.+      ..+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            5667777653    45899999887654222 1     00111112333333 67777777643      3578899887


Q ss_pred             CceeEE--EecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEE-----ecCCCCEEEEEEeeC-CcEEEE
Q 007234          149 GSLLGK--FRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTFSDN-GKYVLS  216 (612)
Q Consensus       149 ~~~~~~--~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~sp~-~~~l~s  216 (612)
                      .+-...  +...... .+++...++++++.|+    +.+.+||..+.+-...-     +........+.+..+ ++.++.
T Consensus       478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            543221  2211112 2334434788888887    27999999887643211     111111223455554 556666


Q ss_pred             EEcC-C-----CeEEEEEcCCCc
Q 007234          217 SAVG-E-----RYIALWRTDGVK  233 (612)
Q Consensus       217 ~s~~-d-----~~i~vwd~~~~~  233 (612)
                      +|.. +     ..+.+||+.+..
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCcCCCCCeeeCcEEEEEccCCc
Confidence            6531 1     358899988776

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.78  E-value=7.2  Score=37.50  Aligned_cols=133  Identities=9%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             CcEEEEEE--CCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEEEecCCC
Q 007234           86 SSLLVLGT--GGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        86 ~~~l~~gs--~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                      ++.|+...  .++.  |...++..... .++.. +..    ..|+|+++.|+-.+. ...|...++..+.....+.   +
T Consensus       115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~  185 (302)
T 3s25_A          115 GNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C  185 (302)
T ss_dssp             TTEEEEEEESSSSCEEEEEEETTSCCC-EEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred             CCEEEEEeecCCCCceEEEEECCCCCe-EEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence            55666665  3344  66666654333 23432 322    456788888776654 6789998987665444333   2


Q ss_pred             CeeEEEECCCCCEEEEeC----CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc-CCCeEEEEEcCCCc
Q 007234          161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK  233 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-~d~~i~vwd~~~~~  233 (612)
                      ... ..++|++.+|+-..    ..|..-++.... ...+.  ...+  ..|+|++.+|+.+.. ....|..-+++...
T Consensus       186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            222 34669999888665    367777776554 33343  2233  348888998887632 23566666666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.44  E-value=8  Score=37.18  Aligned_cols=123  Identities=11%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----cCCcEEEEECCCCceeEEEecCCCCeeEEEECCCC
Q 007234           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg  171 (612)
                      +.|+..++..++.. .+..   ..  +..|+++++.|+-+.    .+..|+..++.. .....+..+..    ..++|++
T Consensus        88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEET
T ss_pred             CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEEC
Confidence            35777787776543 2221   12  236788888888765    344677777764 33444443332    4567788


Q ss_pred             CEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCC-CeEEEEEcCCCc
Q 007234          172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVK  233 (612)
Q Consensus       172 ~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d-~~i~vwd~~~~~  233 (612)
                      +.|+-.+   ..|+..++..+.....+.   +... ..++|++.+|+-+...+ ..|..-+++...
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            8888665   689998987776543333   2222 34669999888775323 256666666554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.00  E-value=26  Score=38.48  Aligned_cols=143  Identities=15%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             CcEEEEEECCCcEEEEEcCC------CeEE--EEec--cC-CCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSA------GQLK--WRLS--DC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~------~~~~--~~~~--~~-h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                      ...|-+|+..+-+.++|..+      +...  ..+.  .+ ....|.++...++|...+.++..+-+..+|..+++....
T Consensus       429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~  508 (758)
T 3ott_A          429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL  508 (758)
T ss_dssp             TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred             CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence            45677888877788998653      1111  1111  11 123589998888887555344445588899877654432


Q ss_pred             Eec-C--CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEE--ec-CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          155 FRA-S--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF--SG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       155 ~~~-~--~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~--~~-h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      ... .  ...+.++....+|.+.+...+-+..||.++++.. .+  .+ ....|.++.. .+|...+ ++ ..| +..+|
T Consensus       509 ~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~-~~g~lWi-~t-~~G-l~~~~  583 (758)
T 3ott_A          509 FADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTC-VKNSIWV-ST-TNG-LWIID  583 (758)
T ss_dssp             CTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEE-ETTEEEE-EE-SSC-EEEEE
T ss_pred             cCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEE-CCCCEEE-EC-CCC-eEEEc
Confidence            211 1  2357888888899888776666888887765432 11  11 1245777766 4676544 44 355 77788


Q ss_pred             cCCCc
Q 007234          229 TDGVK  233 (612)
Q Consensus       229 ~~~~~  233 (612)
                      ..+.+
T Consensus       584 ~~~~~  588 (758)
T 3ott_A          584 RKTMD  588 (758)
T ss_dssp             TTTCC
T ss_pred             CCCce
Confidence            87654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.72  E-value=26  Score=35.74  Aligned_cols=101  Identities=10%  Similarity=0.201  Sum_probs=60.8

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeE--EEec------CCCCeeEEEECCC---CCEEEEeC--------
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG--KFRA------STKGISCMAVSSD---GKMLATAA--------  178 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~------~~~~v~~l~~spd---g~~l~~~~--------  178 (612)
                      ...++++|.|+|+++++-...+.|++++..+++...  .+..      ....+..|+|+|+   +..|.++.        
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            456799999999866654333479988865554322  2221      2346779999995   44444332        


Q ss_pred             -------CeEEEEEcCCC-------eeE-EEEec-CCCCEEEEEEeeCCcEEEEEE
Q 007234          179 -------GQLKTFNCSDH-------KKM-QKFSG-HPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       179 -------g~i~lwd~~~~-------~~~-~~~~~-h~~~v~~l~~sp~~~~l~s~s  218 (612)
                             ..|.-|+...+       +.+ ..+.. .......|+|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   14555554322       112 12321 123468899999999777765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.51  E-value=29  Score=33.98  Aligned_cols=128  Identities=13%  Similarity=0.207  Sum_probs=73.0

Q ss_pred             CcEEEEEEC-CCcEEEEEcCCCeEE--EEe---ccCCCCCeEEEEEecC---CCEEEEE---ecCCcEEEEECCCC----
Q 007234           86 SSLLVLGTG-GGDVLALAVSAGQLK--WRL---SDCHPGGVSAISFATH---GSCIYSA---GADGMVCEIDPLTG----  149 (612)
Q Consensus        86 ~~~l~~gs~-~g~I~vwd~~~~~~~--~~~---~~~h~~~V~~l~~sp~---~~~l~s~---s~dg~v~iwd~~~~----  149 (612)
                      +.+ +++.. .|.|++++...+...  ..+   .........+++|+|+   +..|+..   ..++.|.-|....+    
T Consensus        43 G~l-lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~  121 (347)
T 3das_A           43 GDL-LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSG  121 (347)
T ss_dssp             SCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTT
T ss_pred             CcE-EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccc
Confidence            554 44555 899999987666542  111   1123467899999995   4455543   24556777766542    


Q ss_pred             ------cee-EEEec-CCCCeeEEEECCCCCEEEEeC---------------CeEEEEEcCCC---------eeEEEEec
Q 007234          150 ------SLL-GKFRA-STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSG  197 (612)
Q Consensus       150 ------~~~-~~~~~-~~~~v~~l~~spdg~~l~~~~---------------g~i~lwd~~~~---------~~~~~~~~  197 (612)
                            +.+ ..+.. ....-..|.|.|||.+.++.+               |.|.-++....         ..+. -.|
T Consensus       122 ~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G  200 (347)
T 3das_A          122 EQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYG  200 (347)
T ss_dssp             CCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBC
T ss_pred             ccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeC
Confidence                  111 11221 112346799999998777632               34544454322         1111 135


Q ss_pred             CCCCEEEEEEeeCCcEEEE
Q 007234          198 HPGAVRFMTFSDNGKYVLS  216 (612)
Q Consensus       198 h~~~v~~l~~sp~~~~l~s  216 (612)
                      |.++ ..++|.|+|.++++
T Consensus       201 ~RNp-~Gla~dp~G~L~~~  218 (347)
T 3das_A          201 HRNV-QGLAWDDKQRLFAS  218 (347)
T ss_dssp             CSBC-CEEEECTTCCEEEE
T ss_pred             CCCc-ceEEECCCCCEEEE
Confidence            6554 57899998876554

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=80.69  E-value=38  Score=31.84  Aligned_cols=186  Identities=14%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             CcEEEEEECCCcEEE---EEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecCCcEEEEECCCCc------eeEE
Q 007234           86 SSLLVLGTGGGDVLA---LAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS------LLGK  154 (612)
Q Consensus        86 ~~~l~~gs~~g~I~v---wd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~v~iwd~~~~~------~~~~  154 (612)
                      ...++.-++.|.++-   |++..+.... ++ .....|.++.. +  +...++.++.+|.++...+....      ....
T Consensus        35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~  111 (276)
T 3no0_A           35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK  111 (276)
T ss_dssp             TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred             CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence            456778888888553   5544332211 22 23556776644 4  46789999999999999865432      1222


Q ss_pred             EecCCCCeeEEEECCCC-CEEEEeC-CeEEEEEcCC---------CeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          155 FRASTKGISCMAVSSDG-KMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg-~~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      ++. .+.+..+....+. ..++... |.++.++...         |...-.+.. ...|..+...+++.+++..+ ..|.
T Consensus       112 lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T-~~G~  188 (276)
T 3no0_A          112 LTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVIT-AKGR  188 (276)
T ss_dssp             CCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEE-TTSC
T ss_pred             cCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEe-CCCc
Confidence            332 2345555444433 3444444 8877776532         222222322 34566665555566777776 6898


Q ss_pred             EEEEEcCCCcccc--ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEE--EECCC
Q 007234          224 IALWRTDGVKKQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI--WYGQN  283 (612)
Q Consensus       224 i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~i--wd~~~  283 (612)
                      ++...+..-....  ..-+..+......+.....      .+...++..+.+|.+..  ++...
T Consensus       189 ~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~------~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          189 VKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI------KEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE------SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe------CCCCEEEEEcCCCeEEEeeeCHHH
Confidence            8888875432111  0112222333334433333      23356777788888777  77543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	612
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1kb0a2	573	b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1flga_	582	b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d2ad6a1	571	b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1kv9a2	560	b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1w6sa_	596	b.70.1.1 (A:) Methanol dehydrogenase, heavy chain	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 4e-13
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161
            +S        S     G         G  + S   D  +   D  TG  L         
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
           +  +   S GK + + A    L+ ++  + + M+  + H   V  + F     YV++ + 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS- 308

Query: 220 GERYIALW 227
            ++ + +W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 8/168 (4%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
             +      A CS D  +++W     + + E  +         +        +S      
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
              S         GS           +    VS G     L   H   V  + F + G  
Sbjct: 210 TKKSGKPGPFLLSGSR-------DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKF 261

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
           I S   D  +   D      +    A    ++ +        + T + 
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 43/306 (14%), Positives = 82/306 (26%), Gaps = 51/306 (16%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            F P        S DA IK+WD   G  +        +     + +  +          +
Sbjct: 24  IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 83

Query: 72  KWLSVDRKKKRKL---------------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH 116
           K       +  +                    +V  +    +    V  G         H
Sbjct: 84  KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGH 142

Query: 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176
              V  +     G+ I S   D  V      T     + R     + C++ + +    + 
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202

Query: 177 AA----------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYV 214
           +                         +K ++ S    +    GH   VR + F   GK++
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262

Query: 215 LSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET 273
           LS A  ++ + +W       ++  C+  +  H                    YV+  S  
Sbjct: 263 LSCA-DDKTLRVWDY-----KNKRCMKTLNAHEHFVTSLDFHKTAP------YVVTGSVD 310

Query: 274 GVCYIW 279
               +W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 37/296 (12%), Positives = 79/296 (26%), Gaps = 60/296 (20%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC----------- 164
           H   V+ + F    S + SA  D  +   D  TG      +  T  +             
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 165 -------------------------------MAVSSDGKMLATAA--GQLKTFNCSDHKK 191
                                          +++  +G  + +A+    +K +       
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQ--------SASCVLA 242
           ++ F+GH   VR +  + +G  + S S      + +  T   K +               
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302
               +   +    +       G ++L+ S      +W       L               
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 303 NSKSQKSATAA------IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED 352
           +S  +   + A      ++  K +  +K  + H      L    +    +V    D
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 6/56 (10%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTF 207
                   ++ +       ++ +A+    +K ++       +   GH  +V+ ++F
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 6e-10
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 26/161 (16%)

Query: 18  DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77
             F   + DA  K+WD  +G  +  F                   H S D   + +   +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTF-----------------TGHES-DINAICF-FPN 237

Query: 78  RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137
                  G++           L    +  +L     D    G++++SF+  G  + +   
Sbjct: 238 -------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290

Query: 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           D      D L     G        +SC+ V+ DG  +AT +
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 28/175 (16%), Positives = 46/175 (26%), Gaps = 17/175 (9%)

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                 H G V ++S A       S   D      D   G     F      I+ +    
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 170 DGKMLATAAG----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225
           +G   AT +     +L                    +  ++FS +G+ +L+    +    
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCN 295

Query: 226 LWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
           +W         A     +  H          D+G        V   S      IW
Sbjct: 296 VWDA-----LKADRAGVLAGHDNRVSCLGVTDDGM------AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
           H   + A+ + T    + SA  DG +   D  T + +      +  +   A +  G  +
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 23/135 (17%)

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
            K ++  +    Q F+GH   +  + F  NG    + +              +       
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT---------CRLFDLRAD 258

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-------- 292
             +   +       I +     +G  +LA  +   C +W     +               
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

Query: 293 ------TKILSSSED 301
                   + + S D
Sbjct: 319 GVTDDGMAVATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            S+I  I   F P  + FA  S DA  +++D    Q    +                  +
Sbjct: 226 ESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTY----------------SHD 267

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
           ++    T + +    R         LL+ G    +              L+  H   VS 
Sbjct: 268 NIICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSC 317

Query: 123 ISFATHGSCIYSAGADGMVC 142
           +     G  + +   D  + 
Sbjct: 318 LGVTDDGMAVATGSWDSFLK 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 24/307 (7%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
            ++T      +     S D  +K+W  + G+             +S   + +     +  
Sbjct: 18  HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVL--------GTGGGDVLALAVSAGQLKWRLSDCHPGG 119
              +             G +  V            G     L V   +    L       
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178
            +       G  + S   D MV   DP T + L   +  T      ++  DG  + + + 
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSL 195

Query: 179 -GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237
              ++ ++      +   +GH      M   DN   +L S   +  + +W      +   
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK-TGQCLQ 251

Query: 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297
           +     +H +     +   N        +V+  S+ G   +W  +  E +RN    +   
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN--------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 298 SSEDVNS 304
           S   V  
Sbjct: 304 SGGVVWR 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 50/237 (21%)

Query: 110 WRLSDC--------HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160
           WR  +         H   V + + F   G+ I S   D  +     +TG  L      T 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM--------------- 205
           G+    +  +  +  +    LK +N    + +    GH   VR M               
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 206 -------------TFSDNGKYVLSSAVGERYIALWRTDGVKK----QSASCVLAMEHPAV 248
                            +   V       R +     D + K    ++ +C+  ++    
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305
            +     D       G++V++ S      +W  +    +      + L+S  ++   
Sbjct: 179 RVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 28/210 (13%), Positives = 47/210 (22%), Gaps = 17/210 (8%)

Query: 7   RDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS 65
            D             +    +   +I  T     +    D       +           +
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQKAGRLVWPT 213

Query: 66  VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF 125
                 +        K       L            A       W+    H         
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAE-------RADGWRPGGWQQVAYHRALDRIYLL 266

Query: 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQL 181
                      A   V  +D  TG  L KF      I  + VS D K L  A       L
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTL 325

Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
              +    ++++  +      + +T +D G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 18/257 (7%), Positives = 55/257 (21%), Gaps = 52/257 (20%)

Query: 24  SGDARIKIWDTLKGQVQTEFADIASTETT----------SLYGNRLEREHLSVDYTCMKW 73
                ++++D +      +     +              +  G  L     S        
Sbjct: 75  ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134

Query: 74  LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-------------- 119
               +  KR L                          +++    G               
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 120 --VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----------------------F 155
             ++  +++     +      G + +ID  +G                            
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254

Query: 156 RASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213
                      +               +   +    +++ KF      +  +  S + K 
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKP 313

Query: 214 VL-SSAVGERYIALWRT 229
           +L + + G++ + +   
Sbjct: 314 LLYALSTGDKTLYIHDA 330

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 96  GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155
           G +LA    A +  W +    P     ++  T G+ ++   ADG +      TG  L + 
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAGNVVFQGTADGRLVAYHAATGEKLWEA 514

Query: 156 RASTKGISC-MAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK 212
              T  ++       DG+  ++ A G    +         + +   G     TF   GK
Sbjct: 515 PTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYG-----LAARATERQGPGTVYTFVVGGK 568

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSS 217
           ISC A + D   +A      ++  +  S +K  ++ +   H G V  + ++ +   +++ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
              +R   +W   G   +    +L +   A  +    
Sbjct: 70  G-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 13/165 (7%), Positives = 39/165 (23%), Gaps = 11/165 (6%)

Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATA 177
           +S  ++    + I     +  V   +        + + +     ++ +  + D   + T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 178 A--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
                   +       K                    +   +   G R I++   +    
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
                   +           + +       + + A S    C I+
Sbjct: 130 WW------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 34/270 (12%), Positives = 79/270 (29%), Gaps = 5/270 (1%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            FS   +Y A    +   +++    G +    +D ++        N        +    +
Sbjct: 69  KFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
            + S D K         L+      +   + +  G  +   S  +      +   +    
Sbjct: 128 CF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK 191
           +         C +       +     S      +A  S  + +     +          +
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251
            +  +GH  +V  + F+ +G+ V+S +  +R + LW       +S S         V   
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 252 CR--CIDNGGVDDAGLYVLAISETGVCYIW 279
                + +        Y+L+ S+      W
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 152 LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG------------- 197
           L K    T  + C+  S+DG+ LAT      + +  SD   + + S              
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 198 -----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252
                    +R + FS +GK++ + A           +              +   +   
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 253 RCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEELRNTKATKILSSSEDVNSKSQKS 309
                 G  D  + +  +             G     +       I + S D   +   S
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349
            T  +   +L    +  + H    Y ++     Q ++  S
Sbjct: 235 ETGFLV-ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                 H   V ++ FA  G    S G D ++       G+ + + +  +  +    +S 
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISV 316

Query: 170 DGKMLATAAG 179
           D K + T +G
Sbjct: 317 DDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 10/109 (9%), Positives = 25/109 (22%), Gaps = 10/109 (9%)

Query: 116 HPGGVSAISFATHGSC---IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
             G   A SF               D ++    P     +       + +  + +S+  +
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTR 64

Query: 173 MLATAAG------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215
            + T          +                    +R      +G  ++
Sbjct: 65  HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221
            +  +  GK   +      L  +       + +      +V     S + KY+++ + G+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS-GD 327

Query: 222 RYIALW 227
           +   ++
Sbjct: 328 KKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 166 AVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY 223
            V++DG+M                +  ++ +   H   V  +T S+  ++V +   G+  
Sbjct: 16  HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG--GKGC 73

Query: 224 IALWR-TDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258
           + +W  +    K   S +  +        C+ + +G
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 7/228 (3%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSV--DYT 69
           + SP     AI     R+++        +    D  +      +    +   L+   D +
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 70  CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFAT 127
            +  L  D         +L+                  L                 +   
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
                        +  +D  TG +  +  R         AV+        A   L++F+ 
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL 267

Query: 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
             +  +++    P +   +  S +G  V         +A +  + ++K
Sbjct: 268 EKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 16/159 (10%), Positives = 36/159 (22%), Gaps = 10/159 (6%)

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGIS--CMAVSSDGKMLATAAGQ--------L 181
           I +      +  ID    ++      +  G +     V+  G++      +        L
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241
            T        +        ++     S +GK +       R           + +     
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
            +     F   R I        G  +  +          
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166
            P    +++ +T GS ++  GA G +   D  T    G+          +A
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 48/373 (12%), Positives = 102/373 (27%), Gaps = 29/373 (7%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
             V     G +  +   + ++   +       V     +  G  +   G D  +  ID  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 148 TGSL-----LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP 199
                    +     +    S      + +     A    Q    +    +  Q  S   
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 200 GAVRFMTFSDNGKY---VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256
             V   T+    +    + S    E  + +  T  V   +   +  +   ++       D
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211

Query: 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK----SATA 312
            G       ++ A + +    +   ++          K        N    K     +T+
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271

Query: 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372
            +    +  I      H   A+  + +   Q       +  +   S   V    +     
Sbjct: 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT-HPKSSHLYVDTTFNPD--- 327

Query: 373 SKRGRYVQNRVTALDRAN--AEDAVLPLPKILDSYDKKNR--HQNLSSDLDEVMTDVVDS 428
                 +   V   D  N  A+  VLP+ +  D  +   R      +   DEV   V + 
Sbjct: 328 ----ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 429 ESQAKFMEIKDDK 441
           ++ +  + + DDK
Sbjct: 384 KNDSSALVVVDDK 396

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 13/165 (7%), Positives = 30/165 (18%), Gaps = 18/165 (10%)

Query: 15  PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74
                    S  +     D +      E              ++     L         L
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEV------------VSKPFVIPLIPGSPNPTKL 235

Query: 75  SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS 134
                          +                       +      S        +    
Sbjct: 236 VPR--SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293

Query: 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
           A   G++ + D  T  +          ++ + +S+D K +     
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKD 334

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 14/132 (10%)

Query: 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG-------MVCEIDPLTGSLLGKFRASTKG 161
           K  +    PG  +            +   D            +DP    ++    +S   
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
            S             A   G L  ++       +K +     +  +  S + K V+    
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRK- 333

Query: 220 GERYIALWRTDG 231
            +  I  +  + 
Sbjct: 334 DDGKIYTFPLEK 345

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 92  GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
               G + A+   +G++ W   +  P     ++  T G+ +++   DG     D  +G  
Sbjct: 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFTGTGDGYFKAFDAKSGKE 519

Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAG 179
           L KF+  +  +S  +    DG+  L    G
Sbjct: 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 17/228 (7%), Positives = 44/228 (19%), Gaps = 12/228 (5%)

Query: 13  FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM- 71
            SP            +      +    + E    A                + +      
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 72  -KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------VSAIS 124
                      +    +                 +                     +   
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAAGQLK 182
           F        +A        +D  TG    +  A  +    + +    D   +     +L 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 183 TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
            ++    K ++  +        + F   G  +         +A++  D
Sbjct: 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 46/239 (19%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
           +     +Y  + +    + + D     V             +          ++ D    
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--------MAPD---- 50

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFA 126
                          +  VL    GD+  + +   +  +  +           + + + +
Sbjct: 51  -------------NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 127 THGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGK 172
             G  +Y+                  +       G      R     + +  M  + DG 
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231
           +   A   +   +    K            R    + +  Y           ++  T  
Sbjct: 158 LY-VAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 14/160 (8%), Positives = 35/160 (21%), Gaps = 29/160 (18%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
             +  F       A           D   G+  T                +   +   + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT----------------QEFADLTELY 254

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
           +T ++                  +      +    +   +L    +         ++F  
Sbjct: 255 FTGLRS-----------PKDPNQIYGVLNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDK 301

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
            G  +Y  G    +   +P T   +   +     +S    
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 94  GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153
             G + A  ++ G+ KW   +        +   T G  ++ A  DG +  +D   G  L 
Sbjct: 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TKGGLVWYATLDGYLKALDNKDGKELW 499

Query: 154 KFRASTKGISC-MAVSSDGK-MLATAAG 179
            F+  + GI   M  S  GK  + +  G
Sbjct: 500 NFKMPSGGIGSPMTYSFKGKQYIGSMYG 527

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
           I+C  +  +   + T A    ++ ++  + K + + SGH G V  + ++  G  V  S  
Sbjct: 16  ITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73

Query: 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
               +   +              +    +      
Sbjct: 74  RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 92  GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
               G +LA      +  W++   +P   +  + +T G+ ++   A G +       G  
Sbjct: 434 AVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491

Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD 209
           L +F A +  ++  M     G+  +A  AG       +   +     G     R + F+ 
Sbjct: 492 LWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGG-ESMNLPGMKNRSRLLVFAL 550

Query: 210 NGK 212
           +GK
Sbjct: 551 DGK 553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 10/95 (10%), Positives = 20/95 (21%), Gaps = 1/95 (1%)

Query: 164 CMAVSSDGKMLATAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
            +  +  G  +    G  + T         + ++ H         S +G Y  S  V   
Sbjct: 22  VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN 257
                 T        +  +                
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

 Score = 43.4 bits (101), Expect = 7e-05
 Identities = 37/219 (16%), Positives = 60/219 (27%), Gaps = 29/219 (13%)

Query: 22  ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81
           IC                + E   +        +   +      + Y   ++        
Sbjct: 385 ICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM------LPYKAGQFFVGATLNM 438

Query: 82  RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141
                       G G + A     G  KW   +        ++  T G  ++    DG +
Sbjct: 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA--TAGDLVFYGTLDGYL 496

Query: 142 CEIDPLTGSLLGKFRASTKGISC-MAVSSDGK-MLATAAG----------------QLKT 183
              D  TG LL KF+  +  I   M  +  G   +A   G                    
Sbjct: 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGL 556

Query: 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS-AVGE 221
                 KK+  ++   G V  + FS +GK       VGE
Sbjct: 557 GAVGAFKKLANYTQMGGGV--VVFSLDGKGPYDDPNVGE 593

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 13/173 (7%), Positives = 37/173 (21%), Gaps = 3/173 (1%)

Query: 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISCMAV 167
           ++       +S I      S +     DG +        +       S      + C   
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 168 SSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
             +  +              D      F         +      KY     +   +  L 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
                +      +      +     +        ++   ++ ++ + V +   
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
               V++I F+     +Y+AG+DG++   +  T   +  F       S + ++    +L 
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIACSDNILC 308

Query: 176 TAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210
            A      KT    D    Q    +  ++  +   +N
Sbjct: 309 LATSDDTFKTNAAID----QTIELNASSIYIIFDYEN 341

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 40/366 (10%), Positives = 98/366 (26%), Gaps = 68/366 (18%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            ++I  +  S      +   CSGD  +K+WD      +         ++ S + ++    
Sbjct: 14  DADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPK-----DKSYSHFVHKSGLH 64

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---------S 113
           H+ V    ++  + +          L+   +  GD+L   ++      ++         S
Sbjct: 65  HVDV-LQAIERDAFELC--------LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 115

Query: 114 DCHPGGVSAISFATHGSC-----IYSAGADGMV------------------CEIDPLTGS 150
           D       A+ +           + +    G                             
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175

Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAAG--------QLKTFNCSDHKKMQKFSGHPGAV 202
            +      ++  + + +S  G ++AT                   + +       +  ++
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262
           R + FS  G  +  +     +  +   +    +    +    H +         +  V  
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 263 A-----GLYVLAISETGVCYIW---YGQNIEELR-NTKATKILSSSEDVNSKSQKSATAA 313
                 G  + +    G    W     + I  L  +    +I      V+      A   
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 314 IFAAKL 319
           +F  K 
Sbjct: 355 VFDVKF 360

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 33/282 (11%), Positives = 69/282 (24%), Gaps = 21/282 (7%)

Query: 11  TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
                          D  IKIWD    + +        +     Y  R+     S     
Sbjct: 19  YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR 78

Query: 71  MKWLSVDRKKKRKL-------------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP 117
           +  ++        +             G  +         V  +A        R+   H 
Sbjct: 79  VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 138

Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             V+ + F        S   D  +   +  T   +       +GI+C+       +  ++
Sbjct: 139 AAVNVVDFDDKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS 196

Query: 178 AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237
              ++ ++      ++   GH      +         + S   +  I +W         A
Sbjct: 197 DNTIRLWDIECGACLRVLEGHE---ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA 253

Query: 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
                     V    R      +      +++ S      IW
Sbjct: 254 PAGTLCLRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 9/55 (16%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210
           ++KG+ C  +  D + + +      +K ++ +  +  +  +GH G+V  + + + 
Sbjct: 14  TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFM 205
           GS+        K I+ ++ S+DGK L +A   G + +++ S     + F   H   +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
             +  G     S   + ++ +    G    S+  V              
Sbjct: 62  KTTSKGDLFTVS--WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAV 167
           H   ++A+S +  G  ++SA A+G +   D  TG     F       I+ +  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 11/69 (15%), Positives = 17/69 (24%)

Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
          S S           +  I  WD   G     F D+ +T  T +                +
Sbjct: 19 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 78

Query: 72 KWLSVDRKK 80
          K +      
Sbjct: 79 KVVPAGGSG 87

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 35/238 (14%)

Query: 13  FSPALDYFAICSGDARIKIWD--TLKGQVQTEFA------DIASTETTSLYGNRLEREHL 64
            S +  Y  +   D ++ + D    +     E         I +++              
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA----- 123

Query: 65  SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS 124
                   W         +      +  T G                +   H        
Sbjct: 124 ---IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE---- 176

Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAAGQLKT 183
                  I +    G +  +D    + L     S  + +    +    +   TAA     
Sbjct: 177 ------FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 184 FNCSDHKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
               D K+ +          + HPG          G    +S +G+  +AL  TD   
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	612
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.28
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.75
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.71
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.69
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.47
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.25
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.12
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.92
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.88
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.83
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.79
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.71
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.27
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.22
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.17
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.06
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.44
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.09
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.79
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.64
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.9
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.66
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.34
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.23
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.41
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.82
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.5
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.8
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.57
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.51

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=299.89  Aligned_cols=277  Identities=14%  Similarity=0.208  Sum_probs=229.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-----EeeccCCccccccccccccccccccceeEEEeeec
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT-----EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      |+.+|.++  +|||+|++||+|+ ||.|+|||+.++....     ...+|.+.+                  .+++|.+.
T Consensus        50 H~~~V~~v--~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I------------------~~v~~s~d  108 (337)
T d1gxra_          50 HGEVVCAV--TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYI------------------RSCKLLPD  108 (337)
T ss_dssp             CSSCCCEE--EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBE------------------EEEEECTT
T ss_pred             CCCcEEEE--EECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcE------------------EEEEEcCC
Confidence            56788544  9999999999987 8999999998664321     222344444                  45555433


Q ss_pred             ccccccccCCcEEEEEECCCcEEEEEcCCCe--EEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE
Q 007234           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~  154 (612)
                               +++|++|+.||.|++||+....  ....+ ..|...|.+++|+|++..+++++.|+.|++||+.++++...
T Consensus       109 ---------g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             ---------SSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------CCEEEEeeccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence                     7889999999999999987543  33333 57899999999999999999999999999999999999999


Q ss_pred             EecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       155 ~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ...|...+.+++|++++..+++++  +.+++||+++++.+..+. |..+|.+++|+|+++++++++ .|+.+++||+..+
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~  256 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP  256 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-ccccccccccccc
Confidence            999999999999999999999987  899999999999887765 889999999999999999987 7999999999887


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  312 (612)
                      +..      ....+...+..+.|+     |++++|++++.||.|++||..+++.+.                        
T Consensus       257 ~~~------~~~~~~~~i~~v~~s-----~~g~~l~s~s~Dg~i~iwd~~~~~~~~------------------------  301 (337)
T d1gxra_         257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIF------------------------  301 (337)
T ss_dssp             CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEE------------------------
T ss_pred             ccc------cccccccccceEEEC-----CCCCEEEEEeCCCeEEEEECCCCCEEE------------------------
Confidence            633      223444556777887     999999999999999999987665431                        


Q ss_pred             hhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                      ...|...|.+++|||||++| ++|+.|+++++|++
T Consensus       302 --------------------------------~~~~~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl  335 (337)
T d1gxra_         302 --------------------------------QSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV  335 (337)
T ss_dssp             --------------------------------EEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred             --------------------------------EccCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence                                            11355689999999999999 99999999999987

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-35  Score=293.39  Aligned_cols=280  Identities=14%  Similarity=0.251  Sum_probs=246.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+++|+++  +|+|++++||+|+.||+|+|||+.+++++.++.+|...+.++.|+++                       
T Consensus        16 H~~~I~~l--~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-----------------------   70 (317)
T d1vyhc1          16 HRSPVTRV--IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-----------------------   70 (317)
T ss_dssp             CSSCEEEE--EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCCeEEE--EEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc-----------------------
Confidence            57889665  99999999999999999999999999999999988877776666665                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.+++.+..++.+.+|+.........+ .+|...+.++.|+|+++.+++++.|+.+++||+++++.+..+..|...
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          71 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ----ccccccccccccccccccccccccccc-ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc
Confidence                888999999999999999988877555 679999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCC--------------------cEEEEEEc
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--------------------KYVLSSAV  219 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~--------------------~~l~s~s~  219 (612)
                      +.+++|+|+++++++++  +.|++|+..+++....+.+|...+.++.|+|++                    .++++++ 
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  224 (317)
T d1vyhc1         146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-  224 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred             ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-
Confidence            99999999999999987  899999999999999999999999999998763                    4577776 


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeec
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (612)
                      .|+.|++|++.+++.     +..+..+...+..++++     |++++|++++.||.|++||+.+++.+.           
T Consensus       225 ~d~~i~~~~~~~~~~-----~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------  283 (317)
T d1vyhc1         225 RDKTIKMWDVSTGMC-----LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCMK-----------  283 (317)
T ss_dssp             TTSEEEEEETTTTEE-----EEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCCE-----------
T ss_pred             CCCEEEEEECCCCcE-----EEEEeCCCCCEEEEEEC-----CCCCEEEEEECCCeEEEEECCCCcEEE-----------
Confidence            799999999998763     34555556667778887     999999999999999999987654321           


Q ss_pred             ccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       300 ~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                                  .+.+|...|++++|+|||++| +||+.|+++++|+
T Consensus       284 --------------------------------------------~~~~h~~~V~~~~~s~~~~~l-~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 --------------------------------------------TLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE  317 (317)
T ss_dssp             --------------------------------------------EEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred             --------------------------------------------EEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEeC
Confidence                                                        445677899999999999999 9999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-35  Score=299.66  Aligned_cols=304  Identities=14%  Similarity=0.194  Sum_probs=230.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+++|+++  +|||||++||+|+ |++|+|||+.+++.+..+..+.....................+.+++|.+.     
T Consensus        61 H~~~V~~l--~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----  132 (388)
T d1erja_          61 HTSVVCCV--KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-----  132 (388)
T ss_dssp             CSSCCCEE--EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-----
T ss_pred             CCCcEEEE--EECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-----
Confidence            56789655  9999999999986 899999999999999988766543322211111111112345678888764     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +++|++|+.||.|++||...++.+... .+|...|.++.|++++..+++++.++.|++||..+.........+...
T Consensus       133 ----~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  207 (388)
T d1erja_         133 ----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV  207 (388)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred             ----CCcceeccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeeecccccccccccccccc
Confidence                789999999999999999999988666 679999999999999999999999999999999998888777765554


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE-------ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      +....+.+++++|++++  |.|++||.+++..+..+       .+|..+|.+++|+|++++|++++ .|+.|++||+...
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~  286 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEEeccCC
Confidence            44444455889999887  89999999998776655       46889999999999999999987 7999999999876


Q ss_pred             cccc-------ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCC
Q 007234          233 KKQS-------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (612)
Q Consensus       233 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~  305 (612)
                      ....       ..+......+...+..+.++     |++++|++|+.||.|++||+.+++.+.                 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~sg~~dg~i~vwd~~~~~~~~-----------------  344 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL-----------------  344 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE-----------------
T ss_pred             ccccccccccccceeeecccccceEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCcEEE-----------------
Confidence            4321       11223333445556677787     999999999999999999988776543                 


Q ss_pred             CCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEE------ecCCCceEeccccceeeecceee
Q 007234          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN------CSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~------~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                            ++.+|.+.|.+++      |+|||.+| +|||.|+++++|++
T Consensus       345 --------------------------------------~l~~H~~~V~~~~~~~~~~~spd~~~l-~s~s~Dg~I~iW~~  385 (388)
T d1erja_         345 --------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY  385 (388)
T ss_dssp             --------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred             --------------------------------------EEeCCCCCEEEEEEecCcccCCCCCEE-EEEeCCCEEEEEee
Confidence                                                  2334555555554      67899999 99999999999998


Q ss_pred             e
Q 007234          380 Q  380 (612)
Q Consensus       380 ~  380 (612)
                      +
T Consensus       386 ~  386 (388)
T d1erja_         386 K  386 (388)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-33  Score=278.25  Aligned_cols=282  Identities=15%  Similarity=0.184  Sum_probs=238.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|+++  +|+|++++||+|+.||+|+|||+.+++.+..+..|...+.++.|+++                       
T Consensus        54 H~~~I~~l--~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-----------------------  108 (340)
T d1tbga_          54 HLAKIYAM--HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-----------------------  108 (340)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-----------------------
T ss_pred             CCCCEEEE--EECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc-----------------------
Confidence            57889655  99999999999999999999999999999999888877776666666                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeE---EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                          +.++++|+.++.+.+|+......   ......+|........... +..+..+..|.....|+............+
T Consensus       109 ----~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred             ----ceeeeeecccceeecccccccccccccceeccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                88999999999999999876532   1222356777666665554 557888889999999999888888888888


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (612)
                      ...+....+.+.+.++++++  +.|++||+++++++..+.+|..+|++++|+|++++|++++ .|+.|++|++...... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~-  261 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccccc-
Confidence            88999999999999999887  8999999999999999999999999999999999999987 7999999999887644 


Q ss_pred             ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhc
Q 007234          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                        ..+........+..+.|+     |++++|++|+.||.|++||+.+++.+.                            
T Consensus       262 --~~~~~~~~~~~i~~~~~s-----~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------  306 (340)
T d1tbga_         262 --MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRAG----------------------------  306 (340)
T ss_dssp             --EEECCTTCCSCEEEEEEC-----SSSCEEEEEETTSCEEEEETTTCCEEE----------------------------
T ss_pred             --cccccccccCceEEEEEC-----CCCCEEEEEECCCEEEEEECCCCcEEE----------------------------
Confidence              233334455556777887     999999999999999999987665431                            


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                                 ++.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus       307 ---------------------------~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 ---------------------------VLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             ---------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             ---------------------------EEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence                                       445688899999999999999 9999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-33  Score=281.31  Aligned_cols=243  Identities=14%  Similarity=0.140  Sum_probs=207.0

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      ++++++|+|+.||.+. ++.|.+||+.++.....+.+|...+.++.|+++                           +++
T Consensus        21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~---------------------------g~~   72 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS---------------------------GYY   72 (311)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred             EEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC---------------------------CCe
Confidence            3559999999999986 567999999999999999888877777767666                           899


Q ss_pred             EEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           89 LVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      |++|+.||.|++||+.++... .....+|.++|.+++|+|++++|++++.  +..+++|++++++...++.+|...|+++
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred             EeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999987643 2334679999999999999999999985  4569999999999999999999999999


Q ss_pred             EECCCCCE-EEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          166 AVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       166 ~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      +|+|++++ +++|+  |.|++||+++++....+.+|..+|.++.|+|+++++++++ .|+.|++||+.++...   ..+.
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~---~~~~  228 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKT---GVFE  228 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEE---EECB
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc-cccccccccccccccc---cccc
Confidence            99999986 66665  8999999999999999999999999999999999999987 7999999999887643   1111


Q ss_pred             e-----cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          243 M-----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       243 ~-----~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .     ..+...+..++|+     |++++|++|+.||.|++||+++++.++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s-----~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWS-----PDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccC-----CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            1     1223446677887     999999999999999999998887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-33  Score=289.84  Aligned_cols=323  Identities=11%  Similarity=0.025  Sum_probs=227.1

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ..||+++  +|||||++||+|+.||.|+|||..+++  .+..+++|.+.|.++.|+++                      
T Consensus         7 ~~pIt~~--~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~----------------------   62 (371)
T d1k8kc_           7 VEPISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----------------------   62 (371)
T ss_dssp             SSCCCEE--EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----------------------
T ss_pred             CCCeEEE--EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC----------------------
Confidence            4789655  999999999999999999999998776  56777888877776666665                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee----EEE
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----GKF  155 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~----~~~  155 (612)
                           +++|++|+.|+.|+|||+.++...... ..+|...|++++|+|+++.|++++.|++|++|++......    ...
T Consensus        63 -----~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          63 -----SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             -----TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             -----CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence                 889999999999999999987754332 3578999999999999999999999999999998765432    234


Q ss_pred             ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC------------------eeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH------------------KKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       156 ~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~------------------~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                      ..|...|.+++|+|++++|++|+  +.|++||....                  +.+....+|...|.+++|+|++++++
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence            45778999999999999999987  89999997542                  35667788999999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~  295 (612)
                      +++ .|+.|++||+..+..     +..+..+...+..+.|+     |++.+|++| .|+.+++|................
T Consensus       218 s~~-~d~~i~iwd~~~~~~-----~~~~~~~~~~v~s~~fs-----~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~  285 (371)
T d1k8kc_         218 WVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLD  285 (371)
T ss_dssp             EEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred             ccc-cCCcceEEeeecccc-----eeeeecccccceeeeec-----CCCCEEEEE-cCCceEEEEeeCCCceEEEeeeec
Confidence            988 699999999988763     34445555556777887     888877655 477776765443322111110000


Q ss_pred             EeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc----eEeccccce
Q 007234          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV----LLPMSQSLL  371 (612)
Q Consensus       296 ~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~----~l~~s~s~d  371 (612)
                       ....  ..............  .       +..... .+.. .........|.+.|.++++.+++.    .+ +|+|.|
T Consensus       286 -~~~~--~~~~~~~~~~~~~~--~-------~~~~~~-~~~~-~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~-~T~g~D  350 (371)
T d1k8kc_         286 -VPKQ--SSQRGLTARERFQN--L-------DKKASS-EGSA-AAGAGLDSLHKNSVSQISVLSGGKAKCSQF-CTTGMD  350 (371)
T ss_dssp             -CC----------CHHHHHHH--C-------CCCC-----------CCCSSSSSSCEEEEEEEESTTTSCSEE-EEEETT
T ss_pred             -Cccc--cccccccceeeEec--c-------cceeEE-eccc-cccceecccccCCEEEEEEeCCCCcceEEE-EEEcCC
Confidence             0000  00000000000000  0       000000 0000 000111235888999999877653    35 899999


Q ss_pred             eeecceeeec
Q 007234          372 KSKRGRYVQN  381 (612)
Q Consensus       372 ~~~~~w~~~~  381 (612)
                      +.+++|++..
T Consensus       351 g~v~iW~~~~  360 (371)
T d1k8kc_         351 GGMSIWDVRS  360 (371)
T ss_dssp             SEEEEEEHHH
T ss_pred             CeEEEEeCCc
Confidence            9999999843

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-32  Score=272.29  Aligned_cols=240  Identities=18%  Similarity=0.214  Sum_probs=196.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      |+.+|.++  +|+|||++||+|+.||+|+|||+.++...  ..+..|...+.++.|+++                     
T Consensus        57 H~~~v~~~--~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d---------------------  113 (311)
T d1nr0a1          57 HSHQTTVA--KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE---------------------  113 (311)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT---------------------
T ss_pred             CCCCEEEE--EEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccc---------------------
Confidence            46788544  99999999999999999999999887643  446666655555555444                     


Q ss_pred             cccccCCcEEEEEECCC--cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEe
Q 007234           80 KKRKLGSSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                            +.++++++.+.  .++||++.+++....+ .+|...|++++|+|++++ |++|+.|+.|++||+++++....+.
T Consensus       114 ------~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~  186 (311)
T d1nr0a1         114 ------SKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG  186 (311)
T ss_dssp             ------SCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred             ------ccccccccccccccccccccccccccccc-cccccccccccccccceeeecccccccccccccccccccccccc
Confidence                  77888888654  4999999999887665 679999999999999885 8889999999999999999999999


Q ss_pred             cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEe-------cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      .|..+|+++.|+|+++++++++  |.|++||..++..+..+.       +|...|.+++|+|++++|++++ .||.|++|
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iw  265 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIW  265 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEE
Confidence            9999999999999999999887  899999999988777663       6889999999999999999988 79999999


Q ss_pred             EcCCCccccceeeEeecCCce-eEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          228 RTDGVKKQSASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      |+++++..     ..+..+.. ......+.     +++..|++++.||.|++||.+
T Consensus       266 d~~t~~~~-----~~l~~~~~~~~~~~~~~-----~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         266 NVATLKVE-----KTIPVGTRIEDQQLGII-----WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTTTEEE-----EEEECCSSGGGCEEEEE-----ECSSCEEEEETTCCEEEEETT
T ss_pred             ECCCCcEE-----EEEECCCCccceEEEEE-----ecCCEEEEEECCCEEEEEeCC
Confidence            99988744     23322211 11122233     456789999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.8e-31  Score=260.28  Aligned_cols=241  Identities=14%  Similarity=0.168  Sum_probs=185.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee-ccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      |.++|+++  +|||||++||+|+.||+|++||+.+++....+. .|...+                  +++.|.+.    
T Consensus        11 H~~~V~~l--~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v------------------~~v~~~~~----   66 (299)
T d1nr0a2          11 HNKAITAL--SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI------------------TGIKTTSK----   66 (299)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE------------------EEEEECTT----
T ss_pred             CCCCcEEE--EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcE------------------EEEEeecc----
Confidence            57889655  999999999999999999999999999888764 344444                  44555432    


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEE--EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                           +. +++++.|+.+++|+.......  ......|...+.+++|+|+++.++++ .++.+++|+..  +.....  .
T Consensus        67 -----g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          67 -----GD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             -----SC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred             -----ce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccc--cccccc--c
Confidence                 43 567788999999998754321  12223577889999999999876665 56789999953  332222  3


Q ss_pred             CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ...+.+++|+|+++++++++  |.|++||+++++... ....|..+|.+++|+|+++++++++ .|+.|++||+.++...
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFEL  214 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            45678999999999999987  899999999887543 4457999999999999999999987 7999999999876543


Q ss_pred             cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .  ....+..+...+.+++|+     |++.+|++++.||.|++||++++.
T Consensus       215 ~--~~~~~~~h~~~v~~l~~s-----~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         215 A--HTNSWTFHTAKVACVSWS-----PDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             S--CCCCCCCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTCTT
T ss_pred             c--cccccccccccccccccc-----ccccceEEEcCCCEEEEEECCCCC
Confidence            1  122333445566778887     999999999999999999987654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-30  Score=260.15  Aligned_cols=235  Identities=17%  Similarity=0.251  Sum_probs=199.6

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      .++|+++  +|+|||++|++|+.||+|++||+...  +....+..|...+....|+++                      
T Consensus        97 ~~~I~~v--~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------  152 (337)
T d1gxra_          97 DNYIRSC--KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD----------------------  152 (337)
T ss_dssp             TSBEEEE--EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT----------------------
T ss_pred             CCcEEEE--EEcCCCCEEEEeecccccccccccccccccccccccccccccccccccc----------------------
Confidence            4567545  99999999999999999999998744  455566655555444444443                      


Q ss_pred             ccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCC
Q 007234           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        81 ~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                           +.++++++.++.|++|++.+++..... .+|...|++++|++++..+++|+.|+.|++||+++++.+..+. +..
T Consensus       153 -----~~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~  225 (337)
T d1gxra_         153 -----SKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS  225 (337)
T ss_dssp             -----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             -----ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccceeecccc-ccc
Confidence                 788999999999999999999987665 5799999999999999999999999999999999999888776 678


Q ss_pred             CeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      .|.+++|+|+++++++++  |.+++||+++++.. ....|...|.+++|+|++++|++++ .|+.|++||+.+++..   
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~~~~~---  300 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASI---  300 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEE---
T ss_pred             ceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe-CCCeEEEEECCCCCEE---
Confidence            999999999999999887  89999999988765 4567999999999999999999987 7999999999988643   


Q ss_pred             eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                        ....|... +..+.|+     |++++|++++.||.|+|||+
T Consensus       301 --~~~~~~~~-v~~~~~s-----~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         301 --FQSKESSS-VLSCDIS-----VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --EEEECSSC-EEEEEEC-----TTSCEEEEEETTSCEEEEEE
T ss_pred             --EEccCCCC-EEEEEEe-----CCCCEEEEEeCCCeEEEEEE
Confidence              44555544 4556777     99999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-29  Score=254.63  Aligned_cols=316  Identities=12%  Similarity=0.149  Sum_probs=227.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |...|  ++ ++++||++||+|+.||+|+|||+.+++++.++.+|.+.|.++.|++                        
T Consensus        11 H~~~v--it-c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~------------------------   63 (355)
T d1nexb2          11 HMTSV--IT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH------------------------   63 (355)
T ss_dssp             CSSSC--EE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET------------------------
T ss_pred             cCCCc--EE-EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC------------------------
Confidence            44555  32 3566789999999999999999999999999998887666555543                        


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe----
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----  156 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----  156 (612)
                          +.++++|+.||.|++|+............ .+...+....+++++..+++++.|+.|++||+.++.......    
T Consensus        64 ----~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~  139 (355)
T d1nexb2          64 ----GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD  139 (355)
T ss_dssp             ----TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C
T ss_pred             ----CCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccce
Confidence                45799999999999999999987755543 233345667778899999999999999999998765433221    


Q ss_pred             -------------------cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEE
Q 007234          157 -------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       157 -------------------~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~  215 (612)
                                         .|...  ...+.+++++++++.  +.|++||+++++.+....++...+.++.|+|++.+++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d1nexb2         140 YPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI  217 (355)
T ss_dssp             CCEEESCTTTCTTEEEEEECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             eccceeccccccceeeeeeecccc--ccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeee
Confidence                               11222  234556788888877  8999999999999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCcee
Q 007234          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~  295 (612)
                      +++ .|+.|++||+.++...     ..+..+...+.++.++       +++|++++.||.|++||+.++.......... 
T Consensus       218 ~~~-~d~~i~i~d~~~~~~~-----~~~~~h~~~v~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  283 (355)
T d1nexb2         218 SAS-MDTTIRIWDLENGELM-----YTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTN-  283 (355)
T ss_dssp             EEE-TTSCEEEEETTTCCEE-----EEECCCSSCCCEEEEC-------SSEEEEECTTSEEEEEETTTCCEEEEEECTT-
T ss_pred             ccc-ccceEEeeeccccccc-----cccccccccccccccc-------cceeeeeecccccccccccccceecccccCC-
Confidence            987 7999999999988643     4444555555566553       5799999999999999998876543222111 


Q ss_pred             EeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeec
Q 007234          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (612)
Q Consensus       296 ~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~  375 (612)
                       +.+...++++++    .+ +++.|+.+++||.    ..|..+.   ..+.+|...|++++|+|+. ++ ++++.|+.++
T Consensus       284 -~~~~~~~~~~~~----~l-~~g~d~~i~vwd~----~tg~~~~---~~~~~~~~~V~~v~~~~~~-~~-~~~s~dg~~~  348 (355)
T d1nexb2         284 -LSAITTFYVSDN----IL-VSGSENQFNIYNL----RSGKLVH---ANILKDADQIWSVNFKGKT-LV-AAVEKDGQSF  348 (355)
T ss_dssp             -CCCCCEEEECSS----EE-EEEETTEEEEEET----TTCCBCC---SCTTTTCSEEEEEEEETTE-EE-EEEESSSCEE
T ss_pred             -ceEEEEEcCCCC----EE-EEEeCCEEEEEEC----CCCCEEE---EEecCCCCCEEEEEEcCCe-EE-EEEECCCcEE
Confidence             111122344433    44 4445666666551    1222221   2345788899999999874 55 8899999988


Q ss_pred             ceee
Q 007234          376 GRYV  379 (612)
Q Consensus       376 ~w~~  379 (612)
                      +|-.
T Consensus       349 l~~~  352 (355)
T d1nexb2         349 LEIL  352 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-28  Score=242.15  Aligned_cols=311  Identities=13%  Similarity=0.145  Sum_probs=229.3

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |..+|  ++ +++++|++||+|+.||+|+|||+.+++++.++.+|...+.++.|+                         
T Consensus        15 H~~~V--~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~-------------------------   66 (342)
T d2ovrb2          15 HDDHV--IT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-------------------------   66 (342)
T ss_dssp             STTSC--EE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-------------------------
T ss_pred             cCCce--EE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC-------------------------
Confidence            45667  33 477889999999999999999999999999998877665544443                         


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +.++++|+.|+.+++|+.......... ..+...+....+.  ...+..+..|+.+.+|+..+++....+......
T Consensus        67 ----~~~l~s~s~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  139 (342)
T d2ovrb2          67 ----DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA  139 (342)
T ss_dssp             ----TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             ----CCccccceecccccccccccccceecc-cccceeEeeeecc--cccccccccceeEEEeecccccceeeeeccccc
Confidence                347999999999999999988876555 3455566665554  457888999999999999999888887755544


Q ss_pred             eeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcccccee
Q 007234          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (612)
                      ...  ..+....+++++  +.|++||....+.+..+.+|...+..+  ++++.++++++ .|+.|++||+..++..    
T Consensus       140 ~~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~~~~~~----  210 (342)
T d2ovrb2         140 VRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVETGNCI----  210 (342)
T ss_dssp             EEE--EEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred             cee--eccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeecccceee----
Confidence            333  333445555554  999999999999999999998876654  55788999987 7999999999887643    


Q ss_pred             eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCc---eeEeecccccCCCCcccchhhhc
Q 007234          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT---KILSSSEDVNSKSQKSATAAIFA  316 (612)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~i~~  316 (612)
                       .....+...+..+.+       ++++|++++.||.|++||....+........   ...+.+   +..+++    .+++
T Consensus       211 -~~~~~~~~~v~~~~~-------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~s  275 (342)
T d2ovrb2         211 -HTLTGHQSLTSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC---LQFNKN----FVIT  275 (342)
T ss_dssp             -EEECCCCSCEEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE---EEECSS----EEEE
T ss_pred             -eEecccccceeEEec-------CCCEEEEEcCCCEEEEEecccccccccccccceeeeceee---cccCCC----eeEE
Confidence             444445555555544       4579999999999999999887765443322   111111   222333    7888


Q ss_pred             ccccceecCCCceEEEEeCCccCceEEEe-----eccCCCeEEEEecCCCceEeccccceee----ecceeee
Q 007234          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ  380 (612)
Q Consensus       317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~l~~S~dg~~l~~s~s~d~~----~~~w~~~  380 (612)
                      |+.|+.+++||.        ......+++     .+|...|++++|+|||.++ ++|+.||+    +++|++.
T Consensus       276 ~s~Dg~i~iwd~--------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l-a~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         276 SSDDGTVKLWDL--------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EETTSEEEEEET--------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             EcCCCEEEEEEC--------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEE-EEEeCCCCCeeEEEEEeCC
Confidence            888887777651        112222233     2477789999999999999 99998886    7888873

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-28  Score=250.52  Aligned_cols=243  Identities=19%  Similarity=0.282  Sum_probs=195.1

Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      ...|+++  +|+|+|++|++|+.||.|++||..+++.+..+.+|...+.+..++.+                        
T Consensus       121 ~~~V~~l--~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------------  174 (388)
T d1erja_         121 DLYIRSV--CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS------------------------  174 (388)
T ss_dssp             CCBEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             CCCEEEE--EECCCCCcceecccccccccccccccccccccccccccccccccccc------------------------
Confidence            3457555  99999999999999999999999999999988887776665555554                        


Q ss_pred             ccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec-CCCEEEEEecCCcEEEEECCCCceeEEEe-----
Q 007234           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFR-----  156 (612)
Q Consensus        83 ~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----  156 (612)
                         +..+++|+.+|.+++||..+....... . +.....++.+++ ++++|++|+.||.|++||..++.....+.     
T Consensus       175 ---~~~~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~  249 (388)
T d1erja_         175 ---GDKLVSGSGDRTVRIWDLRTGQCSLTL-S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES  249 (388)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTTEEEEEE-E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred             ---cccccccccceeeeeeecccccccccc-c-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccc
Confidence               778999999999999999998887655 3 334455555554 88999999999999999999988776653     


Q ss_pred             --cCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCe------------eEEEEecCCCCEEEEEEeeCCcEEEEEEcC
Q 007234          157 --ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (612)
Q Consensus       157 --~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~  220 (612)
                        +|...|.+++|+|++++|++++  |.|++||+++++            .......|...|.+++|+|++++|++++ .
T Consensus       250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~  328 (388)
T d1erja_         250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-K  328 (388)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-T
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-C
Confidence              4677899999999999999987  899999997653            3445567899999999999999999987 7


Q ss_pred             CCeEEEEEcCCCccccceeeEeecCCceeEEeEEe-cCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI-DNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      ||.|++||+.+++..     ..+..+...+..+.+ ....++|++.+|++|+.||+|++|+++
T Consensus       329 dg~i~vwd~~~~~~~-----~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPL-----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEE-----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEE-----EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999988743     444444433344433 344566999999999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-27  Score=230.50  Aligned_cols=269  Identities=14%  Similarity=0.201  Sum_probs=205.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      ++++||++||+|+.||+|+|||+.+++++.++.+|.+.|.++.|  +                           +++|++
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~---------------------------~~~l~s   70 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D---------------------------ERVIIT   70 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C---------------------------SSEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--c---------------------------cceeec
Confidence            46678999999999999999999999999999888776554333  1                           678999


Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce---eEEEecCCCCeeEEEEC
Q 007234           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVS  168 (612)
Q Consensus        92 gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~s  168 (612)
                      |+.||.|++|++..+........ +..  ....+.+....++++..++.+.+||......   ...+..|...+.++.+.
T Consensus        71 ~s~D~~i~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEMLNTLIH-HCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EETTSCEEEEESSSCCEEEEECC-CCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             ccccccccccccccccccccccc-ccc--ccccccccccceeecccccceeEeeccccccccccccccccccccccceec
Confidence            99999999999999988766532 222  2334555667899999999999999887653   34456677788888877


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      ++  .+++++  +.|++||+++++.+..+.+|...+..+.++  +.++++++ .|+.|++||+.+....     .....+
T Consensus       148 ~~--~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~~~~~~-----~~~~~~  217 (293)
T d1p22a2         148 DK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACL-----RVLEGH  217 (293)
T ss_dssp             TT--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE-----EEECCC
T ss_pred             cc--ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEecccceee-----eeeccc
Confidence            54  444443  899999999999999999999999887775  56788887 7999999999987643     333333


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCC
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~  326 (612)
                      ...+..  +.     +++.+|++++.||.|++||+.+.......               .                    
T Consensus       218 ~~~v~~--~~-----~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---------------~--------------------  255 (293)
T d1p22a2         218 EELVRC--IR-----FDNKRIVSGAYDGKIKVWDLVAALDPRAP---------------A--------------------  255 (293)
T ss_dssp             SSCEEE--EE-----CCSSEEEEEETTSCEEEEEHHHHTSTTSC---------------T--------------------
T ss_pred             ceeeee--cc-----ccceEEEEEcCCCEEEEEECCCCcccccc---------------C--------------------
Confidence            433332  33     67899999999999999997655432110               0                    


Q ss_pred             CceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeeccee
Q 007234          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (612)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~  378 (612)
                                 .....+.+.+|.+.|.+++|  |+.+| +|+|.|+++++|+
T Consensus       256 -----------~~~~~~~~~~H~~~V~~v~~--d~~~l-~s~s~Dg~i~iWD  293 (293)
T d1p22a2         256 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWD  293 (293)
T ss_dssp             -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC
T ss_pred             -----------CceeeEEecCCCCCEEEEEE--cCCEE-EEEecCCEEEEeC
Confidence                       01123366789989999888  57788 9999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-27  Score=236.37  Aligned_cols=238  Identities=18%  Similarity=0.270  Sum_probs=207.9

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      +..+|+++  +|+|++.++++++.++.+.+|+....+....+..+...+....|+++                       
T Consensus        58 h~~~V~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  112 (317)
T d1vyhc1          58 HTDSVQDI--SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-----------------------  112 (317)
T ss_dssp             CSSCEEEE--EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred             CCCcEEEE--eeecccccccccccccccccccccccccccccccccccceeeeccCC-----------------------
Confidence            45678555  99999999999999999999999998888777766655554444444                       


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..+++++.|+.+++||+.+++....+ .+|...+.+++|+|++++|++++.|+.|++|++.+++....+..+...
T Consensus       113 ----~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~  187 (317)
T d1vyhc1         113 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  187 (317)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC
Confidence                788999999999999999999988766 579999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCCC--------------------CEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          162 ISCMAVSSDG--------------------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       162 v~~l~~spdg--------------------~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      +.+++++|++                    .++++++  +.|++||+++++++.++.+|..+|.+++|+|++++|++++ 
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-  266 (317)
T d1vyhc1         188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-  266 (317)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred             ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE-
Confidence            9999998764                    4567666  8999999999999999999999999999999999999987 


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      .||.|++||+.+++..     ..+..+...+..+.|+     |++++|++++.||+|++||
T Consensus       267 ~dg~i~iwd~~~~~~~-----~~~~~h~~~V~~~~~s-----~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         267 DDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC
T ss_pred             CCCeEEEEECCCCcEE-----EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEeC
Confidence            7999999999988644     4455555666778887     9999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.6e-28  Score=244.78  Aligned_cols=244  Identities=17%  Similarity=0.187  Sum_probs=185.1

Q ss_pred             eEEEEcCCCCEEEEEeCCC-cEEEEECCCCc--EEEEeeccCCccccccccccccccccccceeEEEeeecccccccccC
Q 007234            9 ILTSFSPALDYFAICSGDA-RIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (612)
Q Consensus         9 l~~~fspdg~~las~s~dg-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (612)
                      .+++|+|+|+.||.++.+. .|+.||.....  ....+.                 +|.....+++.|.|...       
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------gh~~~~v~~v~fsP~~~-------   76 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----------------GHGSSVVTTVKFSPIKG-------   76 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----------------TTTTSCEEEEEECSSTT-------
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-----------------CCCCCCEEEEEEeeCCC-------
Confidence            3559999999999887653 35667654432  344454                 34445566777765321       


Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEE-------EEeccCCCCCeEEEEEecCCCEEEEEec--CCcEEEEECCCCceeEEEe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLK-------WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~  156 (612)
                      +.+|++|+.||+|+|||+..+...       ......|.++|.+++|+++++++++++.  ++.+++|+..+++.+..+.
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS  156 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee
Confidence            679999999999999999764321       1122468899999999999999887764  6789999999999999999


Q ss_pred             cCCCCeeEEEECCCCCE-EEEeC--CeEEEEEcCCCeeEEEE---ecCCCCEEEEEEeeC-CcEEEEEEcCCCeEEEEEc
Q 007234          157 ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~-l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~-~~~l~s~s~~d~~i~vwd~  229 (612)
                      +|...|.+++|+|++.+ +++++  +.+++||..+.+....+   .+|...|.+++|+|+ +.++++++ .|+.|++||+
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i~iwd~  235 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDG  235 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEET
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc-cccceeeeee
Confidence            99999999999999875 45554  89999999988776655   456788999999997 57788877 7999999999


Q ss_pred             CCCccccceeeEeecCCceeE----EeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          230 DGVKKQSASCVLAMEHPAVFM----DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      ++++..     ..+..+...+    ....+      ++|++|++++.||.|++||+++++.++
T Consensus       236 ~~~~~~-----~~l~~~~~~v~~~~~s~~~------~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         236 KSGEFL-----KYIEDDQEPVQGGIFALSW------LDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             TTCCEE-----EECCBTTBCCCSCEEEEEE------SSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccc-----ccccccccccccceeeeec------cCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            887643     3333222222    22223      688999999999999999998887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.1e-27  Score=244.83  Aligned_cols=243  Identities=9%  Similarity=0.071  Sum_probs=191.9

Q ss_pred             ceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEE-EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 007234           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (612)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd  145 (612)
                      .++|++|.+.         ++++++|+.+|.|+|||..+++.. ...+.+|.++|++++|+|++++|++|+.|++|++||
T Consensus         9 pIt~~~~s~d---------g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           9 PISCHAWNKD---------RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CCCEEEECTT---------SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CeEEEEECCC---------CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            4667777654         789999999999999999888632 233368999999999999999999999999999999


Q ss_pred             CCCCceeE--EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee----EEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          146 PLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       146 ~~~~~~~~--~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      +.++....  .+..|...|.+++|+|+++.+++++  +.|++|++.....    .....+|...|.+++|+|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            98776443  4556778999999999999999987  8999998876543    23345789999999999999999998


Q ss_pred             EcCCCeEEEEEcCCCcccc-------------ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          218 AVGERYIALWRTDGVKKQS-------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      + .|+.|++|+........             .........+...+..++|+     |++++|++++.||.|++||+.++
T Consensus       160 s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         160 S-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-----ANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             E-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-----SSSSEEEEEETTTEEEEEEGGGT
T ss_pred             c-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-----cccccccccccCCcceEEeeecc
Confidence            7 79999999986543210             11233344455556778887     99999999999999999998655


Q ss_pred             ceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceE
Q 007234          285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL  364 (612)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l  364 (612)
                      ..+.                                                       .+..|...|.+++|+|||+++
T Consensus       234 ~~~~-------------------------------------------------------~~~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         234 MAVA-------------------------------------------------------TLASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             TEEE-------------------------------------------------------EEECSSCCEEEEEEEETTEEE
T ss_pred             ccee-------------------------------------------------------eeecccccceeeeecCCCCEE
Confidence            4321                                                       344566689999999999988


Q ss_pred             eccccceeeecceeeec
Q 007234          365 PMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       365 ~~s~s~d~~~~~w~~~~  381 (612)
                       ++|+ |+.+++|....
T Consensus       259 -a~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         259 -AAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             -EEET-TSSCEEEEEET
T ss_pred             -EEEc-CCceEEEEeeC
Confidence             7776 67777776643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-27  Score=239.47  Aligned_cols=247  Identities=13%  Similarity=0.148  Sum_probs=182.7

Q ss_pred             CcccceeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234            3 SSNIRDILTSFSP--ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus         3 s~~V~~l~~~fsp--dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ..+|+++  +|+|  +|++||+|+.||+|+|||+..++....+..+....    +      ......+.++.|.+.    
T Consensus        63 ~~~v~~v--~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~----~------~~~~~~v~~v~~s~~----  126 (325)
T d1pgua1          63 SSVVTTV--KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE----F------QVLAGPISDISWDFE----  126 (325)
T ss_dssp             TSCEEEE--EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE----E------ECCSSCEEEEEECTT----
T ss_pred             CCCEEEE--EEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccc----c------ccccCcEEEEEECCC----
Confidence            3567544  9998  67899999999999999987655332222111000    0      001223445555443    


Q ss_pred             ccccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEec
Q 007234           81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        81 ~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                           +..+++++.  ++.+.+|+..+++.+..+ .+|...|++++|+|+++. +++++.|+.|++||...++....+..
T Consensus       127 -----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         127 -----GRRLCVVGEGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             -----SSEEEEEECCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             -----CCccceeeccccceEEEEeecccccceee-eecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence                 667777665  456999999999988776 579999999999998875 77899999999999988877766544


Q ss_pred             ---CCCCeeEEEECCC-CCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEe---eCCcEEEEEEcCCCeEEEEE
Q 007234          158 ---STKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---DNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       158 ---~~~~v~~l~~spd-g~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s---p~~~~l~s~s~~d~~i~vwd  228 (612)
                         +...|.+++|+|+ +.++++++  |.|++||+++++.+..+.+|..++.++.|+   |+|++|++++ .|+.|++||
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd  279 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWD  279 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEE
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEE
Confidence               5568999999996 67888776  899999999999999999999888777766   7899999988 799999999


Q ss_pred             cCCCccccceeeEeecCCc-eeEE-eEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          229 TDGVKKQSASCVLAMEHPA-VFMD-CRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      +.+++..   ..+....+. .... .+.+      +.+.+|++++.||.|++||+
T Consensus       280 ~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         280 VTTSKCV---QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTTTEEE---EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEET
T ss_pred             CCCCCEE---EEEEecCCcccCeEEEEEE------CCCCEEEEEECCCEEEEEEC
Confidence            9988754   222222222 1111 2222      23457899999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=7.8e-27  Score=230.29  Aligned_cols=249  Identities=15%  Similarity=0.176  Sum_probs=198.2

Q ss_pred             CcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCC
Q 007234           37 GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH  116 (612)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h  116 (612)
                      |+..+.+.+|...|.+++|+++                           +++|++|+.||.|++||+.+++....+..+|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~d---------------------------g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h   54 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSAD---------------------------GKTLFSADAEGHINSWDISTGISNRVFPDVH   54 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTT---------------------------SSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred             CccceEcCCCCCCcEEEEECCC---------------------------CCEEEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence            5677888888888887777776                           8899999999999999999999988877789


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce---eEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeE
Q 007234          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM  192 (612)
Q Consensus       117 ~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~  192 (612)
                      ...|++++|+|+++ +++++.|+.+++|+......   ......+...+.+++++|+|++++++. +.+++|+..  +..
T Consensus        55 ~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~  131 (299)
T d1nr0a2          55 ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLT  131 (299)
T ss_dssp             SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEE
T ss_pred             CCcEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence            99999999999986 56677899999999765421   222334567889999999999998887 899999954  333


Q ss_pred             EEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       193 ~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      ...  ....+.+++|+|+++++++++ .|+.|++||+.++...   ......|.. .+..+.++     |++.+|++++.
T Consensus       132 ~~~--~~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~---~~~~~~~~~-~i~~~~~~-----~~~~~l~~~~~  199 (299)
T d1nr0a2         132 EVP--ISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVHPA-EITSVAFS-----NNGAFLVATDQ  199 (299)
T ss_dssp             EEE--CSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEECSS-CEEEEEEC-----TTSSEEEEEET
T ss_pred             ccc--ccccccccccccccccccccc-cccccccccccccccc---ccccccccc-cccccccc-----ccccccccccc
Confidence            333  345678999999999999987 7999999999887543   233334444 45667777     99999999999


Q ss_pred             CCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCe
Q 007234          273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED  352 (612)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v  352 (612)
                      ||.|++||+.++..+...                                                    ..+.+|...|
T Consensus       200 d~~i~~~~~~~~~~~~~~----------------------------------------------------~~~~~h~~~v  227 (299)
T d1nr0a2         200 SRKVIPYSVANNFELAHT----------------------------------------------------NSWTFHTAKV  227 (299)
T ss_dssp             TSCEEEEEGGGTTEESCC----------------------------------------------------CCCCCCSSCE
T ss_pred             cccccccccccccccccc----------------------------------------------------cccccccccc
Confidence            999999998765443210                                                    0234577789


Q ss_pred             EEEEecCCCceEeccccceeeecceeee
Q 007234          353 INLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       353 ~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      .+++|+|+|.+| ++|+.|+.+++|++.
T Consensus       228 ~~l~~s~~~~~l-~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         228 ACVSWSPDNVRL-ATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred             ccccccccccce-EEEcCCCEEEEEECC
Confidence            999999999999 999999999999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=9.3e-27  Score=235.34  Aligned_cols=316  Identities=12%  Similarity=-0.006  Sum_probs=216.4

Q ss_pred             eEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc
Q 007234            9 ILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (612)
Q Consensus         9 l~~~fsp-dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (612)
                      .+-.||| ||+++|+++ +|.|.+||..++..++.  +|...+.++.|+++                           ++
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spD---------------------------g~   55 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD---------------------------TK   55 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSS---------------------------SE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCC---------------------------CC
Confidence            3468999 999999987 57999999998887753  45555555555555                           77


Q ss_pred             EEEEEECC-C-cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEE
Q 007234           88 LLVLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (612)
Q Consensus        88 ~l~~gs~~-g-~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (612)
                      .|++++.+ | .|++||..+++.. .+ ..|...|.+++|+|+|++|++++.++.+++|++.+++....+..+...+.++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             EEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence            77766554 3 5899999998875 33 5699999999999999999999999999999999999999999898899999


Q ss_pred             EECCCCCEEEEeC------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          166 AVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       166 ~~spdg~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +|+|||++|+.+.            +.+++||+.+++... +..|...+..+.|+|+|++|++++ .++.+.+|+.....
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~~~d~~~~~  211 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS-YRSLDPSPDRVVLN  211 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEECSSSSC
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe-CCCceEcccccccc
Confidence            9999999998653            369999999887654 445778889999999999999987 79999999976553


Q ss_pred             ccc--ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCC-----cEEEEECCCcce--ecccCCceeEeecccccC
Q 007234          234 KQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEE--LRNTKATKILSSSEDVNS  304 (612)
Q Consensus       234 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~s  304 (612)
                      ...  .........+........++     +++..++++..+.     .+..++...+..  +.........+... ...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  285 (360)
T d1k32a3         212 FSFEVVSKPFVIPLIPGSPNPTKLV-----PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP-VHG  285 (360)
T ss_dssp             EECCSCBEEEEEESSTTCCCGGGCC-----CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC-CCC
T ss_pred             eeeccccceEEEecccCccccceEC-----CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEE-ecC
Confidence            220  00111111111111222232     6666655544322     233344444332  22222222222211 112


Q ss_pred             CCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      +...    .++.+..++.++.||       -.. .    ++..|.+.|.+++|||||++| ++++.|+.+++|++..
T Consensus       286 ~~~~----~~~~~~~~~~i~~~d-------~~~-~----~~~~~~~~v~~~~~SpDG~~l-~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         286 EFAA----YYQGAPEKGVLLKYD-------VKT-R----KVTEVKNNLTDLRLSADRKTV-MVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             SHHH----HHHCCCCCEEEEEEE-------TTT-C----CEEEEEEEEEEEEECTTSCEE-EEEETTSCEEEEESSC
T ss_pred             CCee----EEEecCCCCEEEEEE-------CCC-C----eEEEecCCcCEEEECCCCCEE-EEEECCCeEEEEECCC
Confidence            2211    455555554444333       111 1    223455568999999999999 9999999999999843

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6e-26  Score=233.67  Aligned_cols=262  Identities=16%  Similarity=0.222  Sum_probs=178.5

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE------EeeccCCccccccccccccccccccceeEEEeee
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT------EFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~   75 (612)
                      |.++|.++  ++++  +++++||.|++|+|||..+.+...      ....+...+            |   ........+
T Consensus        13 H~~~I~~v--~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~   73 (393)
T d1sq9a_          13 HDADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL------------H---HVDVLQAIE   73 (393)
T ss_dssp             SSSCEEEE--EECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE------------E---EEEEEEEEE
T ss_pred             ccCccEEE--EEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCc------------e---EeeeEeeec
Confidence            67888655  7764  699999999999999986654211      111111000            0   000111111


Q ss_pred             cccccccccCCcEEEEEECCCcEEEEEcCCCeEEE-----Ee----ccCCCCCeEEEEEecC-----CCEEEEEecCCcE
Q 007234           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKW-----RL----SDCHPGGVSAISFATH-----GSCIYSAGADGMV  141 (612)
Q Consensus        76 ~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~-----~~----~~~h~~~V~~l~~sp~-----~~~l~s~s~dg~v  141 (612)
                      .+..     ...++++++.||.|++|++.......     ..    ...+...+..++|.++     +.++++++.||++
T Consensus        74 ~~~~-----~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  148 (393)
T d1sq9a_          74 RDAF-----ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT  148 (393)
T ss_dssp             TTTE-----EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred             cCCC-----CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcE
Confidence            1110     14578899999999999986543211     11    1224456788888775     3578999999999


Q ss_pred             EEEECCCCc---------------eeEEE---ecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE------
Q 007234          142 CEIDPLTGS---------------LLGKF---RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------  195 (612)
Q Consensus       142 ~iwd~~~~~---------------~~~~~---~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~------  195 (612)
                      ++||+....               .....   ..+...+.+++|+|++ ++++|+  |+|++||+++++++..+      
T Consensus       149 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM  227 (393)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccc
Confidence            999974321               01111   1234468999999998 788887  89999999999887654      


Q ss_pred             ecCCCCEEEEEEeeCCcEEEEEEcCCC---eEEEEEcCCCccccc--------eeeEeecCCceeEEeEEecCCccCCCC
Q 007234          196 SGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQSA--------SCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (612)
Q Consensus       196 ~~h~~~v~~l~~sp~~~~l~s~s~~d~---~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (612)
                      .+|..+|.+++|+|+|++|++++ .|+   .|++||+.+++....        ........|...+..++|+     |++
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs-~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs-----pd~  301 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-----DSG  301 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC-----SSS
T ss_pred             ccccceEEEcccccccceeeeec-CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC-----CCC
Confidence            47899999999999999999997 575   599999998764310        0011112344556778887     999


Q ss_pred             cEEEEEecCCcEEEEECCCcceecccCCce
Q 007234          265 LYVLAISETGVCYIWYGQNIEELRNTKATK  294 (612)
Q Consensus       265 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~  294 (612)
                      ++|++++.||+|++||+++++.+.....+.
T Consensus       302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             CeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence            999999999999999999999887665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.2e-24  Score=217.28  Aligned_cols=237  Identities=18%  Similarity=0.290  Sum_probs=194.6

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeeccCCccccccccccccccccccceeEEEeeecc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~   77 (612)
                      +.++|.++  +|+|+++++++|+.|+.+++|+.....    ....+.+|...                  ..+..+..  
T Consensus        96 ~~~~v~~v--~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--  153 (340)
T d1tbga_          96 RSSWVMTC--AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------------------LSCCRFLD--  153 (340)
T ss_dssp             SCSCEEEE--EECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC------------------EEEEEEEE--
T ss_pred             ccccEEee--Eeeccceeeeeecccceeecccccccccccccceeccccccc------------------cccccccc--
Confidence            45678555  999999999999999999999986554    22333322211                  11111111  


Q ss_pred             cccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec
Q 007234           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        78 ~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                              +..+..+..++....+........... ..+...+....+.+.+..+++++.|+.|++||+++++++.++.+
T Consensus       154 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         154 --------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             --------TTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             --------ccccccccccccccccccccccccccc-cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence                    566888889999999998887766555 45778899999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEE--ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       158 ~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      |...|++++|+|++++|++|+  |.|++||++..+.+..+  ..|...|.+++|+|++++|++++ .||.|++||+.+++
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~  303 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKAD  303 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCC
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCCCc
Confidence            999999999999999999987  89999999999887766  35667899999999999999987 79999999999876


Q ss_pred             cccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      .     +..+..+...+.++.|+     |++.+|++|+.||.|++||
T Consensus       304 ~-----~~~~~~H~~~V~~l~~s-----~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 R-----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred             E-----EEEEcCCCCCEEEEEEe-----CCCCEEEEEccCCEEEEeC
Confidence            4     34555556667788887     9999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.5e-25  Score=221.53  Aligned_cols=287  Identities=13%  Similarity=0.090  Sum_probs=203.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe---eccCCccccccccccccccccccceeEEEeeeccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      ++..|++|  +|||+|++||+|+.||+|+|||+.++.....+   .+|..                  .+.+++|.+.+ 
T Consensus        10 h~d~I~~l--~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~------------------~V~~v~f~~~~-   68 (342)
T d1yfqa_          10 PKDYISDI--KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH------------------PLLCCNFIDNT-   68 (342)
T ss_dssp             CSSCEEEE--EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS------------------CEEEEEEEESS-
T ss_pred             CCCCEEEE--EEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCC------------------CEEEEEEeCCC-
Confidence            45678766  99999999999999999999999766543332   23433                  45566666554 


Q ss_pred             ccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE---
Q 007234           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---  155 (612)
Q Consensus        79 ~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~---  155 (612)
                             +.++++|+.||.|++|++..+.........+........+.+++..+++++.|+++++||++.+......   
T Consensus        69 -------~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          69 -------DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             -------SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             -------CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecc
Confidence                   5689999999999999999988776665555556666777788889999999999999998655433222   


Q ss_pred             -ecC--CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE---EEEecCCCCEEEEEEee-CCcEEEEEEcCCCeEEE
Q 007234          156 -RAS--TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIAL  226 (612)
Q Consensus       156 -~~~--~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~---~~~~~h~~~v~~l~~sp-~~~~l~s~s~~d~~i~v  226 (612)
                       ..+  ........+.+++..+++++  +.|++||+.+.+..   .....+...+.+..+.+ ++..+++++ .||.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~v  220 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAV  220 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEE
T ss_pred             cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec-CCCeEEE
Confidence             222  22445667778888888877  89999999876532   23344555666666554 566777776 7999999


Q ss_pred             EEcCCCcccc---ceee-------EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCceeE
Q 007234          227 WRTDGVKKQS---ASCV-------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (612)
Q Consensus       227 wd~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~  296 (612)
                      |+........   ....       .....+...+.+++|+     |++.+|++|+.||.|++||+++++.+....     
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-----  290 (342)
T d1yfqa_         221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIKNFA-----  290 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEEECC-----
T ss_pred             EEecCCcceeeccccceeeeeeeccCCCcccccceeEEec-----CCccEEEEECCCCEEEEEECCCCcEEEEec-----
Confidence            9987543221   0000       0111233456678887     999999999999999999998876653211     


Q ss_pred             eecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecc
Q 007234          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (612)
Q Consensus       297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~  376 (612)
                                                                         +...+..++|+|+|.+| ++++.|.+.++
T Consensus       291 ---------------------------------------------------~~~~~~~~~~s~~~~~l-~~a~sdd~~~~  318 (342)
T d1yfqa_         291 ---------------------------------------------------KFNEDSVVKIACSDNIL-CLATSDDTFKT  318 (342)
T ss_dssp             ---------------------------------------------------CCSSSEEEEEEECSSEE-EEEEECTHHHH
T ss_pred             ---------------------------------------------------CCCCCEEEEEEeCCCEE-EEEEcCCcEEE
Confidence                                                               01134456789999999 77777888888


Q ss_pred             eee
Q 007234          377 RYV  379 (612)
Q Consensus       377 w~~  379 (612)
                      |..
T Consensus       319 ~~~  321 (342)
T d1yfqa_         319 NAA  321 (342)
T ss_dssp             CSS
T ss_pred             eee
Confidence            865

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9.6e-25  Score=218.91  Aligned_cols=271  Identities=14%  Similarity=0.158  Sum_probs=196.7

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|+++  +|+|+ .+|++|+.||+|++|+....+..........                ........+. .+    
T Consensus        52 H~~~V~~l--~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~----  107 (355)
T d1nexb2          52 HDGGVWAL--KYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNS----------------TVRCLDIVEY-KN----  107 (355)
T ss_dssp             CSSCEEEE--EEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSS----------------CEEEEEEEEE-TT----
T ss_pred             CCCCEEEE--EEcCC-CEEEEEecccccccccccccccccccccccc----------------cccccccccc-cc----
Confidence            56788655  99986 4899999999999999999887766542211                1111122222 22    


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEec----------------------cCCCCCeEEEEEecCCCEEEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----------------------DCHPGGVSAISFATHGSCIYSAGADG  139 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~----------------------~~h~~~V~~l~~sp~~~~l~s~s~dg  139 (612)
                          +..+++++.||.|++||+.++.......                      ..|...+.  .+.++++.+++++.|+
T Consensus       108 ----~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~  181 (355)
T d1nexb2         108 ----IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDN  181 (355)
T ss_dssp             ----EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTS
T ss_pred             ----cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccc
Confidence                6789999999999999998765432211                      12333333  3456788999999999


Q ss_pred             cEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      .|++||+.+++.+..+..+...+.++.++|++.++++++  +.|++||.+++..+..+.+|...|.++.|+  +++++++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~  259 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA  259 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEE
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeee
Confidence            999999999999999998889999999999999999887  899999999999999999999999999886  4688888


Q ss_pred             EcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc-cCCceeE
Q 007234          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKIL  296 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~-~~~~~~~  296 (612)
                      + .||.|++||+.+....     +.. |........+++     +++.++++| .||.|++||+++++.+.. .......
T Consensus       260 ~-~dg~i~iwd~~~~~~~-----~~~-~~~~~~~~~~~~-----~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~  326 (355)
T d1nexb2         260 A-ADGSIRGWDANDYSRK-----FSY-HHTNLSAITTFY-----VSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQ  326 (355)
T ss_dssp             C-TTSEEEEEETTTCCEE-----EEE-ECTTCCCCCEEE-----ECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred             e-ccccccccccccccee-----ccc-ccCCceEEEEEc-----CCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCC
Confidence            7 7999999999887532     222 344444555665     777776665 589999999999988753 3333333


Q ss_pred             eecccccCCCCcccchhhhccccccee
Q 007234          297 SSSEDVNSKSQKSATAAIFAAKLQDIV  323 (612)
Q Consensus       297 ~~~~~~~s~~~~~~~~~i~~~~~d~~~  323 (612)
                      +.+.. ++++ .    .+++++.||.+
T Consensus       327 V~~v~-~~~~-~----~~~~~s~dg~~  347 (355)
T d1nexb2         327 IWSVN-FKGK-T----LVAAVEKDGQS  347 (355)
T ss_dssp             EEEEE-EETT-E----EEEEEESSSCE
T ss_pred             EEEEE-EcCC-e----EEEEEECCCcE
Confidence            33322 4433 1    56666666543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-25  Score=218.32  Aligned_cols=266  Identities=12%  Similarity=0.085  Sum_probs=195.8

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |.++|+++  +|+|    |++|+.||+|++||+.++.     .+|...+.++.+++                        
T Consensus        12 H~~~I~~l--~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~------------------------   56 (287)
T d1pgua2          12 HNKGITAL--TVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSK------------------------   56 (287)
T ss_dssp             CSSCEEEE--ETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCS------------------------
T ss_pred             CCCceEEE--EECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecC------------------------
Confidence            57899766  9998    9999999999999987542     34544444333322                        


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  161 (612)
                          +..+++++.|++|++|++...+        +...+..+++++++..++++ .++.+.+|+..+++.+..+..+ ..
T Consensus        57 ----~~~~~s~s~D~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~  122 (287)
T d1pgua2          57 ----AQEYSSISWDDTLKVNGITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SP  122 (287)
T ss_dssp             ----TTCCEEEETTTEEEETTEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SC
T ss_pred             ----CCeEEEEeeccccccccccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-ce
Confidence                4457899999999999975321        33567888999888666655 5677899999999988887743 33


Q ss_pred             eeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccc
Q 007234          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (612)
                        ..+++|++..+++++   +.+++|++...+....+. .|..++++++|+|++.+|++++ .||.|++||+.++...  
T Consensus       123 --~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~--  197 (287)
T d1pgua2         123 --GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVK--  197 (287)
T ss_dssp             --EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE--
T ss_pred             --eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeecccccc--
Confidence              345677777887765   579999998776655553 4778999999999999999987 7999999999887643  


Q ss_pred             eeeEeecCCceeEEeEEecCCc-----cCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccch
Q 007234          238 SCVLAMEHPAVFMDCRCIDNGG-----VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (612)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  312 (612)
                        ......+...+..+.|++..     ..+++.++++|+.||.|++||++++...                         
T Consensus       198 --~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-------------------------  250 (287)
T d1pgua2         198 --TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-------------------------  250 (287)
T ss_dssp             --ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-------------------------
T ss_pred             --cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE-------------------------
Confidence              11223334445566665321     1256789999999999999997543210                         


Q ss_pred             hhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                                                   ++.+.+|...|.+++|+|++. + +|+|.|+++++|++
T Consensus       251 -----------------------------~~~~~~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 -----------------------------IKALNAHKDGVNNLLWETPST-L-VSSGADACIKRWNV  286 (287)
T ss_dssp             -----------------------------EEETTSSTTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred             -----------------------------EEEeCCCCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence                                         113346888999999999985 5 78889999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-23  Score=207.04  Aligned_cols=284  Identities=14%  Similarity=0.203  Sum_probs=202.6

Q ss_pred             EECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEE
Q 007234           32 WDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR  111 (612)
Q Consensus        32 wd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~  111 (612)
                      |+..+.+....+++|.+.|.                 +|+.|.           +++|++|+.||.|+|||+.+++++..
T Consensus         1 W~~~~~~~~~~l~GH~~~V~-----------------s~~~~~-----------g~~l~sgs~Dg~i~vWd~~~~~~~~~   52 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVI-----------------TCLQFC-----------GNRIVSGSDDNTLKVWSAVTGKCLRT   52 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCE-----------------EEEEEE-----------TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCCCCCcCEEECCcCCceE-----------------EEEEEC-----------CCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            55556666777776665443                 333321           78899999999999999999999877


Q ss_pred             eccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCC
Q 007234          112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH  189 (612)
Q Consensus       112 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~  189 (612)
                      + .+|...|.+++|+|+  +|++|+.|+++++|+............+...+......+.  .+..+.  +.+.+|+..++
T Consensus        53 ~-~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~  127 (342)
T d2ovrb2          53 L-VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETG  127 (342)
T ss_dssp             C-CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEESSSC
T ss_pred             E-eCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccc--cccccccceeEEEeecccc
Confidence            6 689999999999875  8999999999999999888877777766666666665543  333333  89999999999


Q ss_pred             eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEE
Q 007234          190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (612)
Q Consensus       190 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  269 (612)
                      +....+..+.....  .+.+....++.++ .|+.|++||.......     ..+..+.....  .+.     +++.++++
T Consensus       128 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~-----~~~~~~~~~~~--~~~-----~~~~~l~s  192 (342)
T d2ovrb2         128 QCLHVLMGHVAAVR--CVQYDGRRVVSGA-YDFMVKVWDPETETCL-----HTLQGHTNRVY--SLQ-----FDGIHVVS  192 (342)
T ss_dssp             CEEEEEECCSSCEE--EEEECSSCEEEEE-TTSCEEEEEGGGTEEE-----EEECCCSSCEE--EEE-----ECSSEEEE
T ss_pred             cceeeeecccccce--eeccccceeeeec-CCCeEEEeecccceee-----EEEcCcccccc--ccc-----CCCCEEEE
Confidence            88887776555443  3445566777776 7999999999876533     33333333322  233     57899999


Q ss_pred             EecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeec--
Q 007234          270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--  347 (612)
Q Consensus       270 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--  347 (612)
                      ++.||.|++||++.++.+.........+.+   +.++++    .+++++.++.+++|+        .........+..  
T Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~---~~~~~~----~l~s~s~d~~i~iwd--------~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSG---MELKDN----ILVSGNADSTVKIWD--------IKTGQCLQTLQGPN  257 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCCSCEEE---EEEETT----EEEEEETTSCEEEEE--------TTTCCEEEEECSTT
T ss_pred             EeCCCeEEEeecccceeeeEecccccceeE---EecCCC----EEEEEcCCCEEEEEe--------cccccccccccccc
Confidence            999999999999999887766655443333   233334    788888877766654        112222233333  


Q ss_pred             -cCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          348 -NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       348 -h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                       |...+.++.+  ++.++ ++|+.|+++++|++..
T Consensus       258 ~~~~~~~~~~~--~~~~~-~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         258 KHQSAVTCLQF--NKNFV-ITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             SCSSCEEEEEE--CSSEE-EEEETTSEEEEEETTT
T ss_pred             eeeeceeeccc--CCCee-EEEcCCCEEEEEECCC
Confidence             4445555555  56788 9999999999999843

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.2e-23  Score=214.26  Aligned_cols=205  Identities=15%  Similarity=0.162  Sum_probs=150.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCC
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g   96 (612)
                      +.++++++.||.|++|++..+.....+..+...+.        ...........+.|.+.....    .+.++++++.||
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dg  146 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL--------DSDMKKHSFWALKWGASNDRL----LSHRLVATDVKG  146 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCS--------CTTGGGSCEEEEEEECCC--------CEEEEEEETTS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeecccccee--------eeccCCCceEEEEEecCCCcc----cccEEEEEcCCC
Confidence            35788999999999998765433222211111100        000112233445565443211    157899999999


Q ss_pred             cEEEEEcCCCe---------------E--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe---
Q 007234           97 DVLALAVSAGQ---------------L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---  156 (612)
Q Consensus        97 ~I~vwd~~~~~---------------~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---  156 (612)
                      .+.+|++....               .  .......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+.   
T Consensus       147 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~  225 (393)
T d1sq9a_         147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH  225 (393)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             cEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence            99999985321               0  011123456678999999987 89999999999999999998876654   


Q ss_pred             ---cCCCCeeEEEECCCCCEEEEeC--C---eEEEEEcCCCeeEEEEe-------------cCCCCEEEEEEeeCCcEEE
Q 007234          157 ---ASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDHKKMQKFS-------------GHPGAVRFMTFSDNGKYVL  215 (612)
Q Consensus       157 ---~~~~~v~~l~~spdg~~l~~~~--g---~i~lwd~~~~~~~~~~~-------------~h~~~v~~l~~sp~~~~l~  215 (612)
                         +|..+|.+++|+|||++|++|+  +   .|++||+++++.+..+.             +|.+.|++++|+|++++|+
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence               5778999999999999999997  3   59999999998887764             7999999999999999999


Q ss_pred             EEEcCCCeEEEEEcCCCccc
Q 007234          216 SSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~  235 (612)
                      +++ .|++|++||+.+++..
T Consensus       306 S~s-~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         306 SAG-WDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEE-TTSEEEEEETTTTEEE
T ss_pred             EEC-CCCEEEEEECCCCCEE
Confidence            998 7999999999998643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.1e-22  Score=202.12  Aligned_cols=270  Identities=10%  Similarity=0.020  Sum_probs=186.3

Q ss_pred             cEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEe--ccC
Q 007234           38 QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDC  115 (612)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~--~~~  115 (612)
                      +.++..++|...|.++.|+++                           +++|++|+.||+|+|||+.++.....+  ..+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~---------------------------~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~   54 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPS---------------------------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR   54 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGG---------------------------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCC---------------------------CCEEEEEECCCeEEEEEccCCCcceEEEEecC
Confidence            345555666666666666655                           789999999999999999776432222  236


Q ss_pred             CCCCeEEEEEecCC-CEEEEEecCCcEEEEECCCCceeEEEecCCC-CeeEEEECCCCCEEEEeC--CeEEEEEcCCCee
Q 007234          116 HPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (612)
Q Consensus       116 h~~~V~~l~~sp~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~  191 (612)
                      |..+|.+++|+|++ ..|++|+.||.|++|++..+........+.. ......+.+++..+++++  +.+++||++++..
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~  134 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccc
Confidence            99999999999965 5799999999999999998877777665544 334555666777777776  8999999875432


Q ss_pred             E----EEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc
Q 007234          192 M----QKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL  265 (612)
Q Consensus       192 ~----~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (612)
                      .    .....+  ......+.+.+++..+++++ .|+.|++|++........ ................++     .++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~  207 (342)
T d1yfqa_         135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-NNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLP-----KEQE  207 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE-STTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECS-----GGGC
T ss_pred             ceeeecccccccccceeeeeeeeccCCceeeec-CCCcEEEEecccCcccce-eeeecccccceeeeEeec-----CCCC
Confidence            2    222222  22345567788888899887 799999999988765421 222222333344444444     6788


Q ss_pred             EEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEe
Q 007234          266 YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI  345 (612)
Q Consensus       266 ~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~  345 (612)
                      .+++++.||.+.+|+..................                                        .......
T Consensus       208 ~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~  247 (342)
T d1yfqa_         208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC----------------------------------------HRLNLKD  247 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC----------------------------------------CCCCTTC
T ss_pred             EEEeecCCCeEEEEEecCCcceeeccccceeee----------------------------------------eeeccCC
Confidence            999999999999999765544321111100000                                        0000022


Q ss_pred             eccCCCeEEEEecCCCceEeccccceeeecceeeecc
Q 007234          346 LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (612)
Q Consensus       346 ~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~~  382 (612)
                      ..|...+.+++|+|+|.+| +||+.|+++++|++.++
T Consensus       248 ~~~~~~v~~l~~sp~~~~l-asg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         248 TNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CSSCCCEEEEEECTTTCCE-EEEETTSCEEEEETTTT
T ss_pred             CcccccceeEEecCCccEE-EEECCCCEEEEEECCCC
Confidence            3566689999999999999 99999999999998654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=5.7e-21  Score=198.35  Aligned_cols=190  Identities=9%  Similarity=-0.020  Sum_probs=150.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~   97 (612)
                      -++++.+.||+|.|||..+++++..+..+. .+..+.|+++                           ++++++++.||.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpD---------------------------G~~l~~~s~dg~   84 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVIGRDGK   84 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEEETTSE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEEEEEcCCCC
Confidence            345788899999999999999999998653 4667777777                           899999999999


Q ss_pred             EEEEEcCCCeE--EEEec--cCCCCCeEEEEEecCCCEE-EEEecCCcEEEEECCCCceeEEEecC-----------CCC
Q 007234           98 VLALAVSAGQL--KWRLS--DCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRAS-----------TKG  161 (612)
Q Consensus        98 I~vwd~~~~~~--~~~~~--~~h~~~V~~l~~sp~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~~~  161 (612)
                      |.+||+.+++.  ...+.  .+|.+.+.+..|+|||++| ++++.+++|++||..+++.+..+..+           ...
T Consensus        85 v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~  164 (432)
T d1qksa2          85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR  164 (432)
T ss_dssp             EEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred             EEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence            99999988763  22322  3455666777788899986 67888999999999999998887643           235


Q ss_pred             eeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEe-cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ...+.++|+|..++.+.   +.|.+||..+++...... .+...+..+.|+|+|+++++++..++.+.++|..+.+..
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            66789999998876553   899999998876544332 355678899999999999888877889999999877643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.6e-19  Score=176.75  Aligned_cols=262  Identities=13%  Similarity=0.114  Sum_probs=196.6

Q ss_pred             EEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEECCCcEE
Q 007234           21 AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVL   99 (612)
Q Consensus        21 as~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~~g~I~   99 (612)
                      ++++.|++|.|||+.+++.+.++... ..+..++|+++                           ++++ +++..++.|.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spd---------------------------G~~l~v~~~~~~~i~   57 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPD---------------------------GTKVYVANAHSNDVS   57 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT---------------------------SSEEEEEEGGGTEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCC---------------------------CCEEEEEECCCCEEE
Confidence            45677999999999999999988643 22333444444                           6666 5666788999


Q ss_pred             EEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEE-EecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC
Q 007234          100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA  178 (612)
Q Consensus       100 vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~  178 (612)
                      +||+.+++.+..+. .| ..+..+.|++++..+++ +..++.+.+|+..+++....+..+ ..+.++.++|+|+.++.+.
T Consensus        58 v~d~~t~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          58 IIDTATNNVIATVP-AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCceeeeee-cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee
Confidence            99999999987774 34 35789999999987554 556788999999999988888754 5678999999999887655


Q ss_pred             ---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEe
Q 007234          179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (612)
Q Consensus       179 ---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (612)
                         +.+.+|+..+++.+..+..+ ..+..+.++|++..+++++..++.+.+|+.......     ......... ....+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~  207 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEAAP-SGIAV  207 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSSEE-EEEEE
T ss_pred             ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeee-----ecccccCCc-ceeec
Confidence               68999999999998888754 457889999999999888766678888887766532     223333333 34556


Q ss_pred             cCCccCCCCcEEEEEec---CCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEE
Q 007234          256 DNGGVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV  332 (612)
Q Consensus       256 ~~~~~~~~~~~l~t~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~  332 (612)
                      .     +++..+++++.   ++.|++||..+++.+..                                           
T Consensus       208 ~-----~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~-------------------------------------------  239 (301)
T d1l0qa2         208 N-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITAR-------------------------------------------  239 (301)
T ss_dssp             C-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEE-------------------------------------------
T ss_pred             c-----ccccccccccccceeeeeeeeecCCCeEEEE-------------------------------------------
Confidence            5     88888776644   46899999887765321                                           


Q ss_pred             EeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeeec
Q 007234          333 AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       333 ~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                                  +.. ...+..++|||||++|.++++.|+++++|++.+
T Consensus       240 ------------~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         240 ------------IPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             ------------EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ------------EcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                        111 125678999999998767888999999999754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=8e-21  Score=197.17  Aligned_cols=325  Identities=7%  Similarity=-0.062  Sum_probs=208.2

Q ss_pred             EEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPALD--YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspdg~--~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      .+++|.+  ++++.+.||+|+|||+.+++++.++..+. .+..++|+++                           ++++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPD---------------------------Gk~l   76 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSAS---------------------------GRYL   76 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTT---------------------------SCEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEE
Confidence            4556543  55677889999999999999999998654 4666777777                           8999


Q ss_pred             EEEECCCcEEEEEcCCCeEEE--Ee--ccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCC-----
Q 007234           90 VLGTGGGDVLALAVSAGQLKW--RL--SDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRAST-----  159 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~--~~--~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~-----  159 (612)
                      ++++.||.|++||+.+++...  .+  ..+|...+.+++|+|||++++++ ..++.+++||..+++++..+..+.     
T Consensus        77 ~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2          77 LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc
Confidence            999999999999999887532  22  23466667788888999987554 589999999999998888776543     


Q ss_pred             ------CCeeEEEECCCCCEEEEeC---CeEEEEEcCCCee-EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          160 ------KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       160 ------~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                            .....+..++++..++...   +.+.+++...... .....++...+..+.|+|++++++++...+..+.+|+.
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~  236 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS  236 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred             eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence                  2345667777777776654   5677777665543 22334678889999999999999988877888999999


Q ss_pred             CCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEE--ecCCcEEEEECCCc-------ceecccCCceeEeecc
Q 007234          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI--SETGVCYIWYGQNI-------EELRNTKATKILSSSE  300 (612)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~--s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~  300 (612)
                      .+++...   ...............+.    .+....+.+.  +.|+.+.+|+....       +...........+...
T Consensus       237 ~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v  309 (426)
T d1hzua2         237 KDRRLSA---LVDVGKTPHPGRGANFV----HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  309 (426)
T ss_dssp             TTTEEEE---EEECSSCCCCSCCEEEE----ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE
T ss_pred             ccccEEE---EeccCCcccccceeeee----cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE
Confidence            9887541   11111111111111111    0222223222  34778888875443       2222222222222222


Q ss_pred             cccCCCCcccchhhhc-------ccccceecCCCceEEEEeCCccCceE-----EEeeccCCCeEEEEecCCCceEecc-
Q 007234          301 DVNSKSQKSATAAIFA-------AKLQDIVKPASVHTFVAYGLLLKPSF-----QKILVNSGEDINLNCSQDGVLLPMS-  367 (612)
Q Consensus       301 ~~~s~~~~~~~~~i~~-------~~~d~~~~~~~~~~~~~~g~~~~~~~-----~~~~~h~~~v~~l~~S~dg~~l~~s-  367 (612)
                       .++|+++    .+++       +..++.+.+||    +..+.......     ..+..|...|.+++|||||+++.+| 
T Consensus       310 -~~sPdg~----~l~v~~~~~~s~~~~~tv~vwd----~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         310 -KTHPKSS----HLYVDTTFNPDARISQSVAVFD----LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             -ECCTTCS----EEEECCTTCSSHHHHTCEEEEE----TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             -EcCCCCc----eEEEeecCCCCcccCCEEEEEE----CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEE
Confidence             2788887    4442       23333333332    01122111110     0122355679999999999977455 


Q ss_pred             ---ccceeeecceeee
Q 007234          368 ---QSLLKSKRGRYVQ  380 (612)
Q Consensus       368 ---~s~d~~~~~w~~~  380 (612)
                         ++.++.+++|+..
T Consensus       381 ~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         381 WNGKNDSSALVVVDDK  396 (426)
T ss_dssp             CCCTTSCCEEEEEETT
T ss_pred             ecCCCCCCeEEEEECC
Confidence               3578899999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-20  Score=179.62  Aligned_cols=232  Identities=13%  Similarity=0.251  Sum_probs=176.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+++|.++  +|  ++++|++|+.||.|++|++..+............                    ...+...     
T Consensus        54 H~~~V~~v--~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-----  104 (293)
T d1p22a2          54 HTGSVLCL--QY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--------------------VLHLRFN-----  104 (293)
T ss_dssp             CSSCEEEE--EC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--------------------EEEEECC-----
T ss_pred             CCCCEeee--ec--ccceeecccccccccccccccccccccccccccc--------------------ccccccc-----
Confidence            45677333  54  7889999999999999999999877665422111                    1111111     


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeE--EEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                          ...++++..++.+.+|+......  .......|...|..+.+.+  ..+++++.|+.|++||..+++.+..+.++.
T Consensus       105 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         105 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ----ccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccc
Confidence                56789999999999999987653  2233357888898888764  478899999999999999999999999988


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc--
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--  235 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~--  235 (612)
                      ..+..+.++  +.++++++  |.|++||+++.+.+..+.+|...+..  +++++.+|++++ .||.|++||+......  
T Consensus       179 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~  253 (293)
T d1p22a2         179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA-YDGKIKVWDLVAALDPRA  253 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred             cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc-CCCEEEEEECCCCccccc
Confidence            888888776  45777776  89999999999999999999988875  567788999987 7999999998653321  


Q ss_pred             --cceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          236 --SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                        ...++..+..+...+..+.|       ++.+|++++.||+|++||
T Consensus       254 ~~~~~~~~~~~~H~~~V~~v~~-------d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         254 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC
T ss_pred             cCCceeeEEecCCCCCEEEEEE-------cCCEEEEEecCCEEEEeC
Confidence              11234445544444555555       357899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.1e-20  Score=184.59  Aligned_cols=227  Identities=11%  Similarity=0.093  Sum_probs=166.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      |+..|.++  +|++++ .+++++.|+++++|+..+.+    +.                     ....++.+.+      
T Consensus        45 h~~~V~~~--~~~~~~-~~~s~s~D~~v~~w~~~~~~----~~---------------------~~~~~~~~~~------   90 (287)
T d1pgua2          45 HSNLIVSL--DNSKAQ-EYSSISWDDTLKVNGITKHE----FG---------------------SQPKVASANN------   90 (287)
T ss_dssp             CCSCEEEE--ECCSTT-CCEEEETTTEEEETTEEEEE----CS---------------------SCEEEEEECS------
T ss_pred             CCCCEEEE--EecCCC-eEEEEeeccccccccccccc----cc---------------------cceeeeeecc------
Confidence            35567544  888765 57899999999999875322    10                     1112222222      


Q ss_pred             cccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-cEEEEECCCCceeEEEec-CC
Q 007234           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRA-ST  159 (612)
Q Consensus        82 ~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~-~~  159 (612)
                          +..+++...++.+.+|+..+++.+..+.  +...+  .++++++..+++++.|+ .|++|++...+....+.. +.
T Consensus        91 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  162 (287)
T d1pgua2          91 ----DGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR  162 (287)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred             ----CCceEEEeecccceeeeccceeeeeecc--cccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccC
Confidence                3445666777789999999998876663  33344  45677788888887765 799999977666555543 56


Q ss_pred             CCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEeeC----------CcEEEEEEcCCCeEEE
Q 007234          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDN----------GKYVLSSAVGERYIAL  226 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~----------~~~l~s~s~~d~~i~v  226 (612)
                      ..+++++|+|++.+|++|+  |.|++||+.+++... .+.+|..+|.+++|+|.          +.++++++ .|+.|++
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~i  241 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFI  241 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEE
T ss_pred             CceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec-CCCeEEE
Confidence            6899999999999999997  899999999988654 46789999999999875          45788887 7999999


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEEC
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~  281 (612)
                      ||++.+...    +.....+...+..+.|+     |++ .|++++.||.|++|++
T Consensus       242 w~~~~~~~~----~~~~~~h~~~V~~v~~~-----~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         242 YSVKRPMKI----IKALNAHKDGVNNLLWE-----TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EESSCTTCC----EEETTSSTTCEEEEEEE-----ETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCCCeE----EEEeCCCCCCeEEEEEC-----CCC-EEEEEECCCeEEEEEE
Confidence            999875432    33344444555667776     765 5899999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=6.7e-21  Score=191.70  Aligned_cols=242  Identities=10%  Similarity=0.037  Sum_probs=174.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccc
Q 007234            2 GSSNIRDILTSFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      +...|+.+  +|||||++|++++.+  ..|++||..+++.. .+..|...+..+.|+++                     
T Consensus        41 ~~~~v~~~--~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spd---------------------   96 (360)
T d1k32a3          41 EPLRIRYV--RRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRN---------------------   96 (360)
T ss_dssp             CCSCEEEE--EECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTT---------------------
T ss_pred             CCCCEEEE--EECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeeccc---------------------
Confidence            35567555  999999999887654  37999999988765 45556655555555555                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCC
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTG  149 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~  149 (612)
                            ++++++++.++.+++|++.+++....+ ..|...+.+++|+|+|++|+.++          .++.+++||+.++
T Consensus        97 ------g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          97 ------GKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             ------SSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ------ccccceeccccccccccccccceeeee-ecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence                  889999999999999999999887555 56888999999999999988654          3456999999887


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee-------EEEEecC----------------------
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-------MQKFSGH----------------------  198 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~-------~~~~~~h----------------------  198 (612)
                      +.... ..+...+.+++|+|||++|++++  +.+.+||......       ...+..|                      
T Consensus       170 ~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  248 (360)
T d1k32a3         170 KIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD  248 (360)
T ss_dssp             EEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCC
T ss_pred             ceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccccccee
Confidence            66544 34667789999999999999887  7888888644321       1111111                      


Q ss_pred             --------------CCCEEEEEEeeCCcE-------------EEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEE
Q 007234          199 --------------PGAVRFMTFSDNGKY-------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD  251 (612)
Q Consensus       199 --------------~~~v~~l~~sp~~~~-------------l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  251 (612)
                                    .+....+...+++..             +++++ .++.+++||+.+++..      .+   ...+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~------~~---~~~v~  318 (360)
T d1k32a3         249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP-EKGVLLKYDVKTRKVT------EV---KNNLT  318 (360)
T ss_dssp             CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC-CCEEEEEEETTTCCEE------EE---EEEEE
T ss_pred             ecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC-CCCEEEEEECCCCeEE------Ee---cCCcC
Confidence                          112233333333322             23332 5789999999887532      11   12345


Q ss_pred             eEEecCCccCCCCcEEEEEecCCcEEEEECCCcceeccc
Q 007234          252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       252 ~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      .++|+     |||++|++++.||.|++||+++++.....
T Consensus       319 ~~~~S-----pDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         319 DLRLS-----ADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EEEEC-----TTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             EEEEC-----CCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            67787     99999999999999999999988765433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=7.7e-20  Score=181.86  Aligned_cols=266  Identities=12%  Similarity=0.043  Sum_probs=190.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccC--CccccccccccccccccccceeEEEeeecccccccccCCcEE-EEEEC
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG   94 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~gs~   94 (612)
                      +|+++++.|++|+|||+.+++++.++..+.  ..+..++|+++                           ++++ ++++.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD---------------------------g~~l~v~~~~   54 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG---------------------------GRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT---------------------------SSEEEEEETT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC---------------------------CCEEEEEECC
Confidence            589999999999999999999999886532  33445555555                           6666 56677


Q ss_pred             CCcEEEEEcCCCeEEEEeccC----CCCCeEEEEEecCCCEEEEEe------------cCCcEEEEECCCCceeEEEecC
Q 007234           95 GGDVLALAVSAGQLKWRLSDC----HPGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      +|.|.+||+.+++.+..+...    +...+.+++|+|+++.+++++            .++.+.+||..+++....+.. 
T Consensus        55 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  133 (337)
T d1pbyb_          55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-
Confidence            899999999999988766321    123456899999999988876            357899999999999888875 


Q ss_pred             CCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEE------------------------
Q 007234          159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYV------------------------  214 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l------------------------  214 (612)
                      ...+.+++|+|||++++++++.+.+||..+++....+..+... ....++|++..+                        
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence            4567899999999999999988999999999988877654321 111222222111                        


Q ss_pred             EEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccCCce
Q 007234          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK  294 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~  294 (612)
                      ...+ .++.+.+|+..++...   . ..............+.     +++.+++++  ++.|++||+.+++.+...    
T Consensus       213 ~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~i~v~d~~~~~~~~~~----  276 (337)
T d1pbyb_         213 DPTA-YRTGLLTMDLETGEMA---M-REVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRV----  276 (337)
T ss_dssp             SGGG-EEEEEEEEETTTCCEE---E-EEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEE----
T ss_pred             eecc-cCccEEEEEcCCCcEE---E-EEecCCCcceEEEEec-----ccceEEEEc--cccEEEEECCCCcEEEEE----
Confidence            1111 2346888888877533   1 1222333344445565     888887765  589999999887664311    


Q ss_pred             eEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeee
Q 007234          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (612)
Q Consensus       295 ~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~  374 (612)
                                                                          .+...+.+++|||||++| ++++.|+++
T Consensus       277 ----------------------------------------------------~~~~~~~~~~~s~dG~~l-~v~~~~~~i  303 (337)
T d1pbyb_         277 ----------------------------------------------------PLPHSYYSVNVSTDGSTV-WLGGALGDL  303 (337)
T ss_dssp             ----------------------------------------------------ECSSCCCEEEECTTSCEE-EEESBSSEE
T ss_pred             ----------------------------------------------------cCCCCEEEEEECCCCCEE-EEEeCCCcE
Confidence                                                                112256789999999999 888899999


Q ss_pred             cceeeec
Q 007234          375 RGRYVQN  381 (612)
Q Consensus       375 ~~w~~~~  381 (612)
                      ++|+...
T Consensus       304 ~v~D~~t  310 (337)
T d1pbyb_         304 AAYDAET  310 (337)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999854

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=2.1e-18  Score=168.54  Aligned_cols=238  Identities=12%  Similarity=0.087  Sum_probs=181.3

Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCc-
Q 007234           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-   87 (612)
Q Consensus        10 ~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-   87 (612)
                      .++|||||++|+ +++.+++|++||+.+++.+..+..+..                   ...+.|.+.         +. 
T Consensus        36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-------------------~~~~~~~~~---------~~~   87 (301)
T d1l0qa2          36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-------------------PQGVAVSPD---------GKQ   87 (301)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-------------------EEEEEECTT---------SSE
T ss_pred             EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-------------------ccccccccc---------ccc
Confidence            349999999875 566789999999999999988864432                   223334333         44 


Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEE-EEecCCcEEEEECCCCceeEEEecCCCCeeEEE
Q 007234           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (612)
Q Consensus        88 ~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (612)
                      .++.+..++.+.+|+..+++....+.  +...+.++.|+|+++.++ ++..++.+.+|+..+++.+..+..+ ..+.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  164 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA  164 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred             ccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEE
Confidence            45555666779999999999887663  556788999999999865 4556888999999999988888754 5678999


Q ss_pred             ECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc--CCCeEEEEEcCCCccccceeeE
Q 007234          167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVL  241 (612)
Q Consensus       167 ~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~  241 (612)
                      ++|+++.++++.   +.+.+|+....+....+..+ ..+..++|++++..++.++.  .++.|++||+.+++..     .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-----~  238 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----A  238 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----E
T ss_pred             eeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEE-----E
Confidence            999999888776   68889998888877777644 45678999999998776542  3468999999988643     3


Q ss_pred             eecCCceeEEeEEecCCccCCCCcEE-EEEecCCcEEEEECCCcceeccc
Q 007234          242 AMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT  290 (612)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~t~s~dg~i~iwd~~~~~~~~~~  290 (612)
                      .+..... ...++|+     |||++| ++++.||.|++||+++++.+..+
T Consensus       239 ~~~~~~~-~~~va~s-----pdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         239 RIPVGPD-PAGIAVT-----PDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             EEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCC-EEEEEEe-----CCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            3333333 3567787     999987 56677999999999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=3.3e-19  Score=184.79  Aligned_cols=277  Identities=9%  Similarity=0.022  Sum_probs=182.9

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEE--Ee---cCCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FR---ASTK  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~---~~~~  160 (612)
                      +-++++++.+|.|+|||+.+++++.++. .| ..+.+++|+|||+++++++.|++|++||+.+++....  +.   +|..
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            3456778889999999999999998874 34 4699999999999999999999999999998875443  33   2334


Q ss_pred             CeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCC-----------EEEEEEeeCCcEEEEEEcCCCeEEE
Q 007234          161 GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGA-----------VRFMTFSDNGKYVLSSAVGERYIAL  226 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~-----------v~~l~~sp~~~~l~s~s~~d~~i~v  226 (612)
                      .+.+++|+|||+++++++   +.+.+||..++++...+.+|...           ...+.+++++..++......+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            556677889999987765   89999999999988877665433           4455666666666655544556666


Q ss_pred             EEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceecccCCceeEeec-ccccC
Q 007234          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSS-EDVNS  304 (612)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~s  304 (612)
                      ++.......   .+....+ ...+..+.++     |++++++++.. ++.+.+|+..+++.+............ ...+.
T Consensus       190 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~-----~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (426)
T d1hzua2         190 VNYKDIDNL---TVTSIGA-APFLADGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV  260 (426)
T ss_dssp             EECSSSSSC---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred             EEeccccce---eeEEecc-CCccEeeeEC-----CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence            665554322   1222233 3334455666     89998888765 567999999988876543221110000 00000


Q ss_pred             CCCcccchhhhcccccceecCCCceEEEEeCCc------cCceEEEeeccCCCeEEEEecCCCceEec------ccccee
Q 007234          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPM------SQSLLK  372 (612)
Q Consensus       305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~l~~S~dg~~l~~------s~s~d~  372 (612)
                      ..+..   .+.+..     ...++.+.......      ......++.+|...+..++|||||++|++      +++.|+
T Consensus       261 ~~~~~---~~~~~~-----~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         261 HPKYG---PVWSTS-----HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             ETTTE---EEEEEE-----CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             cCCCC---ceEEec-----cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence            11110   111111     11133333332211      12456678899999999999999999943      678899


Q ss_pred             eecceeeec
Q 007234          373 SKRGRYVQN  381 (612)
Q Consensus       373 ~~~~w~~~~  381 (612)
                      ++++|++.+
T Consensus       333 tv~vwd~~t  341 (426)
T d1hzua2         333 SVAVFDLKN  341 (426)
T ss_dssp             CEEEEETTC
T ss_pred             EEEEEECCC
Confidence            999999743

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=2.2e-19  Score=179.25  Aligned_cols=274  Identities=8%  Similarity=-0.002  Sum_probs=186.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-cCCccccccccccccccccccceeEEEeeecccccccccCCcEE-
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-   89 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-   89 (612)
                      +|+++++||++++.|++|.|||+.+++++.+++. +...+.++.|+++                           ++++ 
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD---------------------------G~~l~   55 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD---------------------------NRTAY   55 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT---------------------------SSEEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC---------------------------CCEEE
Confidence            8999999999999999999999999999998863 3334444555544                           6666 


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCC-----CCCeEEEEEecCCCEEEEEe------------cCCcEEEEECCCCcee
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLL  152 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~s~s------------~dg~v~iwd~~~~~~~  152 (612)
                      +++..++.|.+||+.+++.+..+....     ...+..++|+|||+++++++            .++.+.+||..+++..
T Consensus        56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            455578889999999999887664321     12466899999999988775            4678999998887655


Q ss_pred             EEEec--CCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEE------------
Q 007234          153 GKFRA--STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA------------  218 (612)
Q Consensus       153 ~~~~~--~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s------------  218 (612)
                      ..+..  ....+..+.+++++++++ .++.+.+|++.+++.+..+..+.. ...+.++|++..++...            
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         136 KPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             CCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eEEEeeeccCceEEEEecCCCEEEE-eCCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeee
Confidence            44332  234566777888877665 457799999999998888865432 23334444444332221            


Q ss_pred             -------------cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          219 -------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       219 -------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                                   ..+..+.+|++.++...   ......+........ ++     +++.+++... ++.|.+||..+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~-~~~v~v~d~~~~~  283 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTGL-RS-----PKDPNQIYGV-LNRLAKYDLKQRK  283 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEEE-EC-----SSCTTEEEEE-ESEEEEEETTTTE
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEEE-Ee-----CCCCEEEEec-CCeEEEEECCCCc
Confidence                         12445677777666533   222223344444433 43     5666666554 3579999987776


Q ss_pred             eecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEe
Q 007234          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (612)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~  365 (612)
                      .++..                                                        .+...+.+++|||||++| 
T Consensus       284 ~~~~~--------------------------------------------------------~~~~~~~~va~s~DG~~l-  306 (346)
T d1jmxb_         284 LIKAA--------------------------------------------------------NLDHTYYCVAFDKKGDKL-  306 (346)
T ss_dssp             EEEEE--------------------------------------------------------ECSSCCCEEEECSSSSCE-
T ss_pred             EEEEE--------------------------------------------------------cCCCCEEEEEEcCCCCEE-
Confidence            54311                                                        011257789999999999 


Q ss_pred             ccccceeeecceeeec
Q 007234          366 MSQSLLKSKRGRYVQN  381 (612)
Q Consensus       366 ~s~s~d~~~~~w~~~~  381 (612)
                      ++++.|+.+++|+...
T Consensus       307 ~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         307 YLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             EEESBSSEEEEEETTT
T ss_pred             EEEeCCCcEEEEECcc
Confidence            8888999999999854

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.5e-18  Score=179.85  Aligned_cols=270  Identities=10%  Similarity=-0.028  Sum_probs=180.0

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCcee--EEEe---cCCCC
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFR---ASTKG  161 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~---~~~~~  161 (612)
                      -++++.+.+|+|.|||..+++++..+.. | ..+..++|+|||+++++++.|++|++||+.+++..  ..++   .+.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDT-G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC-S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3468888999999999999999988854 3 36999999999999999999999999999887643  3333   23344


Q ss_pred             eeEEEECCCCCEEEE-eC--CeEEEEEcCCCeeEEEEecC-----------CCCEEEEEEeeCCcEEEEEEcCCCeEEEE
Q 007234          162 ISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (612)
Q Consensus       162 v~~l~~spdg~~l~~-~~--g~i~lwd~~~~~~~~~~~~h-----------~~~v~~l~~sp~~~~l~s~s~~d~~i~vw  227 (612)
                      +.+..|+|||++|++ +.  +.|++||..+++++..+..|           ......+.++|+|..++.+...++.|.+|
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            556677889998754 44  89999999999998877654           35567789999999887776678999999


Q ss_pred             EcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceecccCCceeEeecccccCCC
Q 007234          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS  306 (612)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~  306 (612)
                      +..+.+..   .+..+.+. .....+.++     |+|+++++++. ++.+.++|..+++.+.............  +.+.
T Consensus       191 d~~~~~~~---~~~~i~~g-~~~~~~~~s-----pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~--~~~~  259 (432)
T d1qksa2         191 DYTDLNNL---KTTEISAE-RFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGAN  259 (432)
T ss_dssp             ETTCSSEE---EEEEEECC-SSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEE
T ss_pred             EccCCCcc---eEEEEccc-CccccceEC-----CCCCEEEEeccccceEEEeecccceEEEEeccCccccccC--cccc
Confidence            99877643   23333333 344567787     99998888876 5589999998887654322111000000  0000


Q ss_pred             CcccchhhhcccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceee
Q 007234          307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (612)
Q Consensus       307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~  379 (612)
                      ..    .-..+.......+.++.+.+......     ....|...+....++++|..+ ++++++.++++|..
T Consensus       260 ~~----~~~~g~~~~~~~lg~~~v~~~~~~~~-----~~~~~~~~v~~~~~~~~g~~~-~~~s~p~~~~lw~~  322 (432)
T d1qksa2         260 FV----HPTFGPVWATSHMGDDSVALIGTDPE-----GHPDNAWKILDSFPALGGGSL-FIKTHPNSQYLYVD  322 (432)
T ss_dssp             EE----ETTTEEEEEEEBSSSSEEEEEECCTT-----TCTTTBTSEEEEEECSCSCCC-CEECCTTCSEEEEE
T ss_pred             ee----cCCCCceecccccCCceEEecccccc-----cccccccEEEEEEEcCCCCeE-EEEecCCccceeec
Confidence            00    00011111122223433333321111     122355567777788888777 77777778888864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-16  Score=157.99  Aligned_cols=276  Identities=14%  Similarity=0.196  Sum_probs=182.7

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEe--eccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEE-CCC
Q 007234           20 FAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-GGG   96 (612)
Q Consensus        20 las~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs-~~g   96 (612)
                      +++++.|++|+||++.+...+..+  ..+.+.+..++|+++                           +++|++++ .++
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD---------------------------G~~L~v~~~~d~   59 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD---------------------------KRYLYVGVRPEF   59 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT---------------------------SSEEEEEETTTT
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC---------------------------CCEEEEEECCCC
Confidence            467778999999998755332222  245666777777777                           77776555 478


Q ss_pred             cEEEEEcCCCeEEEEe--ccCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEE--EecCCCCeeEEEECCCC
Q 007234           97 DVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGK--FRASTKGISCMAVSSDG  171 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~--~~~~~~~v~~l~~spdg  171 (612)
                      .|.+|++..+......  ...+...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++|++
T Consensus        60 ~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          60 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS
T ss_pred             eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc
Confidence            8999999765432121  1234556788999999999998875 67899998876655443  33455678899999999


Q ss_pred             CEEEEeC---CeEEEEEcCCCeeEEE------EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEe
Q 007234          172 KMLATAA---GQLKTFNCSDHKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (612)
Q Consensus       172 ~~l~~~~---g~i~lwd~~~~~~~~~------~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (612)
                      +++++++   ..|.+|+.........      ...+......++|++++.+++......+...+|+........ .....
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  218 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI-ECVQT  218 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-EEEEE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce-eeeee
Confidence            9998887   6899999876533221      122345568899999999888877667788888876543221 01111


Q ss_pred             ec------CCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhh
Q 007234          243 ME------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (612)
Q Consensus       243 ~~------~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~  315 (612)
                      ..      ..........++     ++++++++.. .++.+.+|++.........                         
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  268 (333)
T d1ri6a_         219 LDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLSK-------------------------  268 (333)
T ss_dssp             EECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEEE-------------------------
T ss_pred             eeeeecCCCccccceeEEEe-----cccCceeeecccCCeEEEEEEcCCCCEEEE-------------------------
Confidence            10      111222334455     8888766664 5678999976543221100                         


Q ss_pred             cccccceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                                                 .....+...+..++|||||++|.++++.++.+++|++.
T Consensus       269 ---------------------------~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         269 ---------------------------EGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             ---------------------------EEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ---------------------------EEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence                                       00111122456788999999986778888999999773

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=5.8e-17  Score=160.62  Aligned_cols=241  Identities=11%  Similarity=0.054  Sum_probs=169.3

Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++|||||++++ +++.++.|.+||+.+++.+..+..+.....             ......+.|.+.         +..
T Consensus        38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-------------~~~~~~v~~s~d---------g~~   95 (337)
T d1pbyb_          38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER-------------VKSLFGAALSPD---------GKT   95 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE-------------EECTTCEEECTT---------SSE
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc-------------ccceeeEEEcCC---------CcE
Confidence            349999999874 566799999999999999988765432211             001112222222         444


Q ss_pred             EEEEE------------CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEe
Q 007234           89 LVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (612)
Q Consensus        89 l~~gs------------~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  156 (612)
                      ++++.            .++.+.+||..+++....+.  +...+.+++|+|+|+++++++.+  +.+||..+++....+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_          96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred             EEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence            44443            46779999999999887763  45678899999999999998654  7889999998888776


Q ss_pred             cCCCCeeEEEECCCCCEE------------------------EEeC--CeEEEEEcCCCeeEE-EEecCCCCEEEEEEee
Q 007234          157 ASTKGISCMAVSSDGKML------------------------ATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSD  209 (612)
Q Consensus       157 ~~~~~v~~l~~spdg~~l------------------------~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp  209 (612)
                      .+... ....++|++..+                        ..+.  +.+.+||..++.... .+..+...+..+.++|
T Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (337)
T d1pbyb_         172 IQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP  250 (337)
T ss_dssp             STTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred             cCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc
Confidence            53321 111222222111                        0111  368899998887644 4566778888999999


Q ss_pred             CCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      ++.+++..   ++.+++||+.+++..     ....+... +.++.|+     |||++|++++.||.|.+||.++++.+..
T Consensus       251 ~~~~~~~~---~~~i~v~d~~~~~~~-----~~~~~~~~-~~~~~~s-----~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         251 AKTRAFGA---YNVLESFDLEKNASI-----KRVPLPHS-YYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             TSSEEEEE---ESEEEEEETTTTEEE-----EEEECSSC-CCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             cceEEEEc---cccEEEEECCCCcEE-----EEEcCCCC-EEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            99987653   578999999998744     33333333 3557787     9999999999999999999999988765


Q ss_pred             cC
Q 007234          290 TK  291 (612)
Q Consensus       290 ~~  291 (612)
                      ++
T Consensus       317 i~  318 (337)
T d1pbyb_         317 VD  318 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=1e-14  Score=147.04  Aligned_cols=195  Identities=9%  Similarity=-0.083  Sum_probs=136.4

Q ss_pred             CCcccceeEEEEcCCCCEEEEEe-----CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeec
Q 007234            2 GSSNIRDILTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (612)
Q Consensus         2 ~s~~V~~l~~~fspdg~~las~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~   76 (612)
                      +..|+..+  +++|||+.++...     .++.|.+||..+++.+.++..+...  .+.|+++                  
T Consensus        19 ~~~p~~~~--a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpD------------------   76 (373)
T d2madh_          19 ADGPTNDE--APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS------------------   76 (373)
T ss_pred             CCCCcccc--ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCC------------------
Confidence            35678767  9999999887642     3467999999999999888644322  3455554                  


Q ss_pred             ccccccccCCcEEEEEE----------CCCcEEEEEcCCCeEEEEeccCCCCC-------eEEEEEecCCCEEEEEe--c
Q 007234           77 DRKKKRKLGSSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGG-------VSAISFATHGSCIYSAG--A  137 (612)
Q Consensus        77 ~~~~~~~~~~~~l~~gs----------~~g~I~vwd~~~~~~~~~~~~~h~~~-------V~~l~~sp~~~~l~s~s--~  137 (612)
                               ++++++++          .++.|.+||..+++.+..+. .+...       ...+.|+++++.++...  .
T Consensus        77 ---------G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          77 ---------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             ---------CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEe-cCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence                     56666654          46779999999999887663 23332       24678999998766654  4


Q ss_pred             CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEE-eC--CeEEEEEcCCCeeEEEEecCC------CCEEEEEEe
Q 007234          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS  208 (612)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~-~~--g~i~lwd~~~~~~~~~~~~h~------~~v~~l~~s  208 (612)
                      ++.+.+|+....+......    ...++.++|+|+.+++ .+  +.+.+||..+++.......+.      .....+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            5688999988776654433    4568899999987654 33  899999999887766554322      223445566


Q ss_pred             eCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          209 DNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       209 p~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      +++.+++ .+ .++.+.+|+......
T Consensus       223 ~~~~~~~-~~-~~~~v~~~~~~~~~~  246 (373)
T d2madh_         223 KSGRIVW-PV-YSGKILQADISAAGA  246 (373)
T ss_pred             CCceEEE-ec-CCceEEEEEcCCCeE
Confidence            6665554 44 588999999887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.6e-15  Score=151.77  Aligned_cols=194  Identities=9%  Similarity=-0.046  Sum_probs=135.6

Q ss_pred             cccceeEEEEcCCCCEEEEEe-----CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccc
Q 007234            4 SNIRDILTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (612)
Q Consensus         4 ~~V~~l~~~fspdg~~las~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~   78 (612)
                      .|+...  +.+|||+.++...     .+++|.+||..+++.+.++..+...  .++|+++                    
T Consensus         2 ~p~~~~--a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpD--------------------   57 (355)
T d2bbkh_           2 EPRILE--APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADD--------------------   57 (355)
T ss_dssp             CCCBCC--CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT--------------------
T ss_pred             CCcEeE--eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCC--------------------
Confidence            355334  7799999887653     3567999999999999887643222  3444444                    


Q ss_pred             ccccccCCcEEEE----------EECCCcEEEEEcCCCeEEEEecc--CC----CCCeEEEEEecCCCEEEEEe--cCCc
Q 007234           79 KKKRKLGSSLLVL----------GTGGGDVLALAVSAGQLKWRLSD--CH----PGGVSAISFATHGSCIYSAG--ADGM  140 (612)
Q Consensus        79 ~~~~~~~~~~l~~----------gs~~g~I~vwd~~~~~~~~~~~~--~h----~~~V~~l~~sp~~~~l~s~s--~dg~  140 (612)
                             +++|++          +..+|.|.+||+.+++.+..+..  .+    ......+.|+|+++.++.++  .+..
T Consensus        58 -------g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          58 -------GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             -------SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             -------CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence                   454554          34578899999999998766531  11    22345789999999988775  4678


Q ss_pred             EEEEECCCCceeEEEecCCC-------CeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC
Q 007234          141 VCEIDPLTGSLLGKFRASTK-------GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN  210 (612)
Q Consensus       141 v~iwd~~~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~  210 (612)
                      +.+||..+++.+..+..+..       ....+.+++|++.++...   +.+.+++..+...     .+...+....+.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  205 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQK  205 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETT
T ss_pred             eeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCC
Confidence            99999999998888765432       234567788888777654   5666666554432     34444555678888


Q ss_pred             CcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          211 GKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      +..++.++ .++.+++|++..+..
T Consensus       206 ~~~~~~~~-~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         206 AGRLVWPT-YTGKIHQIDLSSGDA  228 (355)
T ss_dssp             TTEEEEEB-TTSEEEEEECTTSSC
T ss_pred             CCeEEEec-CCCeEEEEecCCCcE
Confidence            88888876 799999999988753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=8.3e-14  Score=137.49  Aligned_cols=251  Identities=10%  Similarity=0.133  Sum_probs=164.0

Q ss_pred             CcccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccc
Q 007234            3 SSNIRDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (612)
Q Consensus         3 s~~V~~l~~~fspdg~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~   81 (612)
                      ...|+.|  +|||||++|++++ .|+.|++|++.......++..+..               .......+.|.+.     
T Consensus        36 ~~~v~~l--a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~---------------~~~~p~~l~~spD-----   93 (333)
T d1ri6a_          36 PGQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---------------LPGSLTHISTDHQ-----   93 (333)
T ss_dssp             SSCCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---------------CSSCCSEEEECTT-----
T ss_pred             CCCEeEE--EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc---------------cCCCceEEEEcCC-----
Confidence            4567666  9999999986555 489999999987654333321110               0112223444433     


Q ss_pred             cccCCcEEEEEEC-CCcEEEEEcCCCeEEEEec-cCCCCCeEEEEEecCCCEEEEEec-CCcEEEEECCCCceeEE----
Q 007234           82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGK----  154 (612)
Q Consensus        82 ~~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~~~~~~~----  154 (612)
                          ++++++++. ++.|.+|+........... ..+...+.++.|+|+++++++++. +..|.+|+.........    
T Consensus        94 ----g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (333)
T d1ri6a_          94 ----GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  169 (333)
T ss_dssp             ----SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             ----CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence                777888775 5679999988776543321 346678899999999999888774 55799999876533221    


Q ss_pred             -E-ecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCe----eEEEEe------cCCCCEEEEEEeeCCcEEEEEEc
Q 007234          155 -F-RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK----KMQKFS------GHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       155 -~-~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~----~~~~~~------~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                       . .........++|++++..++...   +...+|+.....    ....+.      ........+++++++++++..+.
T Consensus       170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~  249 (333)
T d1ri6a_         170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  249 (333)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence             1 12334678999999999887665   677788765432    222221      12345677899999998888877


Q ss_pred             CCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEE--CCCcce
Q 007234          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWY--GQNIEE  286 (612)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd--~~~~~~  286 (612)
                      .++.+.+|++.......  ..............+.|+     |||++|++++. ++.|.+|+  .++|+.
T Consensus       250 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~a~s-----pDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         250 TASLITVFSVSEDGSVL--SKEGFQPTETQPRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TTTEEEEEEECTTSCCE--EEEEEEECSSSCCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             cCCeEEEEEEcCCCCEE--EEEEEeCCCCCeeEEEEe-----CCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            78899999987654331  111111222233456677     99999887765 68999995  455543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=4.7e-15  Score=147.16  Aligned_cols=238  Identities=11%  Similarity=-0.033  Sum_probs=163.5

Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEeeccCCc------cccccccccccccccccceeEEEeeeccccccc
Q 007234           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIAST------ETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (612)
Q Consensus        10 ~~~fspdg~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (612)
                      +++|+|||++++ +++.++.|.+||+.+++.+..+......      +..+.|+++                        
T Consensus        44 ~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~D------------------------   99 (346)
T d1jmxb_          44 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD------------------------   99 (346)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT------------------------
T ss_pred             eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecC------------------------
Confidence            449999999875 5557899999999999998877543221      122233332                        


Q ss_pred             ccCCcEEEEEE------------CCCcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC
Q 007234           83 KLGSSLLVLGT------------GGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (612)
Q Consensus        83 ~~~~~~l~~gs------------~~g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~  149 (612)
                         +++++++.            .++.+.+|+..+++....+.. .....+..+.+++++..+++   ++.+.+||+.++
T Consensus       100 ---G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  173 (346)
T d1jmxb_         100 ---GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTG  173 (346)
T ss_dssp             ---SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTC
T ss_pred             ---CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCC
Confidence               44555443            467799999988765432211 12345666777777765543   355899999999


Q ss_pred             ceeEEEecCCCCeeEEEECCCCCEEE--------------------------EeC--CeEEEEEcCCCeeEE-EEecCCC
Q 007234          150 SLLGKFRASTKGISCMAVSSDGKMLA--------------------------TAA--GQLKTFNCSDHKKMQ-KFSGHPG  200 (612)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~spdg~~l~--------------------------~~~--g~i~lwd~~~~~~~~-~~~~h~~  200 (612)
                      +.+..+..+. ....+.++|++..++                          ++.  +.+.+||..++.... .+..|..
T Consensus       174 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (346)
T d1jmxb_         174 KYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE  252 (346)
T ss_dssp             CEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             CEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccc
Confidence            9888876543 233444555544322                          122  468888988876544 4567888


Q ss_pred             CEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       201 ~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      .+..+.+++++.++++..  ++.|.+||+.+++..     ....... .+..++|+     |||++|++++.||.|++||
T Consensus       253 ~~~~~~~~~~~~~~~~~~--~~~v~v~d~~~~~~~-----~~~~~~~-~~~~va~s-----~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         253 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI-----KAANLDH-TYYCVAFD-----KKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----SSSSCEEEESBSSEEEEEE
T ss_pred             eeEEEEEeCCCCEEEEec--CCeEEEEECCCCcEE-----EEEcCCC-CEEEEEEc-----CCCCEEEEEeCCCcEEEEE
Confidence            899999999988887765  568999999988644     2333222 24567787     9999999999999999999


Q ss_pred             CCCcceecccC
Q 007234          281 GQNIEELRNTK  291 (612)
Q Consensus       281 ~~~~~~~~~~~  291 (612)
                      .++++.+..++
T Consensus       320 ~~t~~~i~~i~  330 (346)
T d1jmxb_         320 PDTLEKVKNIK  330 (346)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CccCCEEEEEE
Confidence            99999887544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=1.5e-13  Score=138.27  Aligned_cols=245  Identities=9%  Similarity=-0.006  Sum_probs=163.7

Q ss_pred             EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus        11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ++|||||++|++++          .++.|.+||..+++.+..+..+.........           ....+.|.+.    
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~d----  135 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP-----------YSWMNANTPN----  135 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEecc-----------CCCcEEEEeC----
Confidence            49999999999875          3578999999999998887654433221111           1123344443    


Q ss_pred             ccccCCcEEEEE--ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCE-EEEEecCCcEEEEECCCCceeEEEec
Q 007234           81 KRKLGSSLLVLG--TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA  157 (612)
Q Consensus        81 ~~~~~~~~l~~g--s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~  157 (612)
                           ++.+++.  ..++.+.+|+....+...     +.....++.++|+|+. +++.+.|+.+.+||...++.......
T Consensus       136 -----g~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         136 -----NADLLFFQFAAGPAVGLVVQGGSSDDQ-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             -----CCcEEEEEEcCCCceEEeeccCCeEEE-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence                 3333333  445668899988877653     3345678899999876 46788999999999998877666543


Q ss_pred             CC------CCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeE--EEEecCC----------CCEEEEEEeeCCcEEEEEE
Q 007234          158 ST------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM--QKFSGHP----------GAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       158 ~~------~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~--~~~~~h~----------~~v~~l~~sp~~~~l~s~s  218 (612)
                      +.      .....+.+++++.+++.+. +.+++|+..++...  .....+.          .....+++++++..++...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             eccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec
Confidence            22      2344566777887777766 89999998876542  2222221          2234456666666544321


Q ss_pred             ---------cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcE--EEEEecCCcEEEEECCCccee
Q 007234          219 ---------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY--VLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       219 ---------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~t~s~dg~i~iwd~~~~~~~  287 (612)
                               ..++.+.+||..+++..     ..+.+... ...+.|+     |||+.  +++++.|+.|++||..+++.+
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~~~~-----~~~~~~~~-~~~~a~s-----pDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGHD-VDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCCcEE-----EEecCCCC-eeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                     24678999999888744     33333333 3456787     99984  467788999999999999988


Q ss_pred             cccC
Q 007234          288 RNTK  291 (612)
Q Consensus       288 ~~~~  291 (612)
                      +...
T Consensus       355 ~~~~  358 (373)
T d2madh_         355 QSTV  358 (373)
T ss_pred             EEEC
Confidence            7654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=2.4e-13  Score=137.20  Aligned_cols=300  Identities=9%  Similarity=0.003  Sum_probs=183.0

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEeeccCCccc-cccccc----------cccccccccceeEEEeeecccccccccCCcE
Q 007234           20 FAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGN----------RLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~s~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +++++.+|.|+||++.+++.++++........ ...+..          ....+-.  ....+......++      |++
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~--hhP~~s~t~gtpD------Gr~   85 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDC--HHPHISMTDGRYD------GKY   85 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCB--CCCEEEEETTEEE------EEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcc--cCCCcceecccCC------CCE
Confidence            55777899999999999999988754221100 000000          0000000  0011111111122      667


Q ss_pred             EEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEE--EEEecCC-----------------cEEEEECCC
Q 007234           89 LVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI--YSAGADG-----------------MVCEIDPLT  148 (612)
Q Consensus        89 l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l--~s~s~dg-----------------~v~iwd~~~  148 (612)
                      +++.. .++.|.++|+.++++...+.-.+...+.+++|+|+|+.+  +..+.+.                 .+..+|..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            76665 556699999999998776655577889999999999853  3333221                 235588888


Q ss_pred             CceeEEEecCCCCeeEEEECCCCCEEEEeC-C------------------------------------------eEEEEE
Q 007234          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA-G------------------------------------------QLKTFN  185 (612)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g------------------------------------------~i~lwd  185 (612)
                      .+....+... ..+..+.++|||+++++++ +                                          .+.+++
T Consensus       166 ~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         166 MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            8777776654 3568899999999988764 1                                          223333


Q ss_pred             cCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc------cceeeEeecCCceeEEeEEecCCc
Q 007234          186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SASCVLAMEHPAVFMDCRCIDNGG  259 (612)
Q Consensus       186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  259 (612)
                      ....+.++.++...++ ..+.++|||+++++++..+++|.+||+.+....      ...++..............|.   
T Consensus       245 ~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd---  320 (441)
T d1qnia2         245 RGESEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD---  320 (441)
T ss_dssp             SSSCSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC---
T ss_pred             ccCCceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec---
Confidence            3444556666655554 679999999999888888999999998753311      011111111111222234565   


Q ss_pred             cCCCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhcccccceecCCCceEEEEeCCccC
Q 007234          260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK  339 (612)
Q Consensus       260 ~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~  339 (612)
                        ++|....+...|..|..|++.......  ...                                           ...
T Consensus       321 --~~g~~yts~~~ds~v~kw~~~~~~~~~--~~~-------------------------------------------~~~  353 (441)
T d1qnia2         321 --GRGNAYTTLFIDSQVCKWNIADAIKHY--NGD-------------------------------------------RVN  353 (441)
T ss_dssp             --SSSEEEEEETTTTEEEEEEHHHHHHHH--TTC-------------------------------------------CCC
T ss_pred             --CCceEEEcccccceEEEeccchhhhhh--ccC-------------------------------------------CCc
Confidence              888888888889999999974322110  000                                           001


Q ss_pred             ceEEEe-----eccCCCeEEEEecCCCceEeccccceeeecceeee
Q 007234          340 PSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (612)
Q Consensus       340 ~~~~~~-----~~h~~~v~~l~~S~dg~~l~~s~s~d~~~~~w~~~  380 (612)
                      +..+++     .+|...+.+.+++|||+|| ++++.-..=|..+++
T Consensus       354 ~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l-~s~~k~s~dr~~~~g  398 (441)
T d1qnia2         354 YIRQKLDVQYQPGHNHASLTESRDADGKWL-VVLSKFSKDRFLPVG  398 (441)
T ss_dssp             CEEEEEECSSCEEEEEETTTTSTTCCCCEE-EEEESCCGGGSCCCS
T ss_pred             eeEeccccccCCCCCccccccccCCCCcEE-EecCccccccCcCCC
Confidence            111122     3676677777899999999 999544444666653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=4.3e-12  Score=126.24  Aligned_cols=245  Identities=11%  Similarity=0.016  Sum_probs=148.9

Q ss_pred             EEEcCCCCEEEEE----------eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234           11 TSFSPALDYFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus        11 ~~fspdg~~las~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ++|||||++|++.          +.|+.|++||..+++.+..+..+.......           ......+.|.+.    
T Consensus        52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~d----  116 (355)
T d2bbkh_          52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV-----------GTYPWMTSLTPD----  116 (355)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB-----------SCCGGGEEECTT----
T ss_pred             eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec-----------CCCCceEEEecC----
Confidence            4999999988764          347899999999999988876543322111           111122333333    


Q ss_pred             ccccCCcEEEEEEC--CCcEEEEEcCCCeEEEEeccCCC------CCeEEEEEecCCCEEEEEe-cCCcEEEEECCCCce
Q 007234           81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHP------GGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL  151 (612)
Q Consensus        81 ~~~~~~~~l~~gs~--~g~I~vwd~~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l~s~s-~dg~v~iwd~~~~~~  151 (612)
                           +..+++++.  +..+.+|+..+++.+..+.....      .....+.++++++.++... .++.+.+++......
T Consensus       117 -----g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~  191 (355)
T d2bbkh_         117 -----GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP  191 (355)
T ss_dssp             -----SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred             -----CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc
Confidence                 666666654  45589999999998866632111      1122334444444433322 223333343332221


Q ss_pred             eEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeE--EEEecCC----------CCEEEEEEeeCCcEEEEE
Q 007234          152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSGHP----------GAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       152 ~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~--~~~~~h~----------~~v~~l~~sp~~~~l~s~  217 (612)
                           .+...+....+.+++..++.++  +.+++|++..++..  ....++.          .....+++++++..++..
T Consensus       192 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~  266 (355)
T d2bbkh_         192 -----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  266 (355)
T ss_dssp             -----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             -----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEE
Confidence                 1223455567777777777665  89999999887542  2222221          123457899999887765


Q ss_pred             EcCC---------CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc--EEEEEecCCcEEEEECCCcce
Q 007234          218 AVGE---------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEE  286 (612)
Q Consensus       218 s~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~t~s~dg~i~iwd~~~~~~  286 (612)
                      ....         +.|.+||..+++..     ..+... .....+.++     |||+  ++++++.|+.|++||.++++.
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMG-HEIDSINVS-----QDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             eccCCceeecCCCCeEEEEeCCCCcEE-----EEecCC-CCEEEEEEc-----CCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            4221         37999999988744     222222 223456676     9987  455667799999999999998


Q ss_pred             ecccC
Q 007234          287 LRNTK  291 (612)
Q Consensus       287 ~~~~~  291 (612)
                      ++.+.
T Consensus       336 ~~~i~  340 (355)
T d2bbkh_         336 LRSVN  340 (355)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            87554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=1.1e-11  Score=128.83  Aligned_cols=137  Identities=10%  Similarity=0.060  Sum_probs=101.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeecc-----CCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADI-----ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .+.|.+|++++..  .||.+.+||+.+++....+..+     ...+.+..|+++                          
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--------------------------   72 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--------------------------   72 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--------------------------
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--------------------------
Confidence            4489999988763  5788999999999987655433     233444444444                          


Q ss_pred             CCcEEEEEEC---------CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE
Q 007234           85 GSSLLVLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        85 ~~~~l~~gs~---------~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~  155 (612)
                       ++.|+.++.         +|.+.+||+.+++.. .+ ..|...+..+.|||||+.++.. .++.+++|+..+++..+..
T Consensus        73 -g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l-~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          73 -GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             -SSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             -CCEEEEEECCcceeeeccCceEEEEECCCCccc-cc-ccCCccccccccccCcceeeEe-ecccceEEECCCCceeeee
Confidence             777777753         567899999999864 33 5688999999999999999886 5778999999888765543


Q ss_pred             ecC------------------CCCeeEEEECCCCCEEEEeC
Q 007234          156 RAS------------------TKGISCMAVSSDGKMLATAA  178 (612)
Q Consensus       156 ~~~------------------~~~v~~l~~spdg~~l~~~~  178 (612)
                      ..+                  .+....+.|+|||+.|+...
T Consensus       149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            221                  12345688999999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1e-11  Score=124.66  Aligned_cols=246  Identities=9%  Similarity=0.017  Sum_probs=158.0

Q ss_pred             EEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccc
Q 007234           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (612)
Q Consensus        11 ~~fspdg~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~   80 (612)
                      ++|+|||++|++.+          .|+.|++||..+++.+..+..+.......           ......+.|.+.    
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~-----------g~~p~~~a~SpD----  134 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV-----------GPRVHIIGNCAS----  134 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB-----------SCCTTSEEECTT----
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc-----------cCCccceEECCC----
Confidence            48999999988764          36789999999999998876543321110           001112333332    


Q ss_pred             ccccCCcEEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEE----
Q 007234           81 KRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----  155 (612)
Q Consensus        81 ~~~~~~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~----  155 (612)
                           +++++++. .++.+.+||+.+++....+.......+    +......++..+.||.+..|+..........    
T Consensus       135 -----Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         135 -----SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             -----SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             -----CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence                 66777776 568899999999998876643222211    1123445677778888888887655433222    


Q ss_pred             --ecCCCCeeEEEECCCCCEEEEeCCeEEEEEcCCCeeEEEE--ecCC----------CCEEEEEEeeCCcEEEEEEcCC
Q 007234          156 --RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF--SGHP----------GAVRFMTFSDNGKYVLSSAVGE  221 (612)
Q Consensus       156 --~~~~~~v~~l~~spdg~~l~~~~g~i~lwd~~~~~~~~~~--~~h~----------~~v~~l~~sp~~~~l~s~s~~d  221 (612)
                        ..+...+....+.+++..+...++.+++++...+......  ..+.          .....++++|++..++.....+
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence              1223345678889999888877788888888766543221  1111          1123478899988776653222


Q ss_pred             --------CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-E-EEEEecCCcEEEEECCCcceecccC
Q 007234          222 --------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-Y-VLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       222 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                              ..|.+||..+++..     ..+... .....+.++     |||+ + ++++..|+.|++||..+++.++.++
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTS-----GPISNG-HDSDAIIAA-----QDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEE-----ECCEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CceeecCCceEEEEECCCCcEe-----EEecCC-CceeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence                    35899999988744     222222 334556776     9986 3 4555678999999999999887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=2.7e-11  Score=121.60  Aligned_cols=268  Identities=9%  Similarity=-0.068  Sum_probs=151.7

Q ss_pred             ECCCc--EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe----------cCCcEEEEECCCCceeEEEecCCC
Q 007234           93 TGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK  160 (612)
Q Consensus        93 s~~g~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~  160 (612)
                      ..+|.  |.+||..+++.+..+. .+..+  .++|+|||+.+++++          .|++|.+||..+++.+..+..+..
T Consensus        41 ~~~g~~~~~~~d~~~~~~~~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          41 YFAGTTENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             TTCSSEEEEEEETTTTEEEEEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             cCCCcceEEEEeCCCCcEEEEEe-CCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            34444  7788999999987764 34333  589999999988765          377899999999999888765432


Q ss_pred             -------CeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeC-CcEEEEEEcCCCeEEEEEc
Q 007234          161 -------GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       161 -------~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-~~~l~s~s~~d~~i~vwd~  229 (612)
                             ....++|+|||++++++.   +.+.+||+.+++....+..+....    +.|+ ...++..+ .||.+.+|++
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~-~Dg~~~~~~~  192 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGS-CPASLAASDL  192 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCC-CTTSCEEEEC
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEc-CCCCEEEEEe
Confidence                   234689999999998775   899999999999998887665432    1222 23444443 6888888887


Q ss_pred             CCCcccccee-eEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC--Ccee-------Eee-
Q 007234          230 DGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKI-------LSS-  298 (612)
Q Consensus       230 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~--~~~~-------~~~-  298 (612)
                      .......... ...............+.     +++..+.+  ..+.+++++...........  ....       ... 
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  265 (368)
T d1mdah_         193 AAAPAAAGIVGAQCTGAQNCSSQAAQAN-----YPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCEEET-----TTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             cCCceeeeeeecccccccccceeecccc-----cCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCC
Confidence            6554321000 00011111222233333     55554443  34556666655443321110  0000       000 


Q ss_pred             -cccccCCCCcccchhhhccccc--ceecCCCceEEEEeCCccCceEEEeeccCCCeEEEEecCCCc-eEeccccceeee
Q 007234          299 -SEDVNSKSQKSATAAIFAAKLQ--DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSK  374 (612)
Q Consensus       299 -~~~~~s~~~~~~~~~i~~~~~d--~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~dg~-~l~~s~s~d~~~  374 (612)
                       ....+++++.    .++....+  .........+.+.+.... ....++. +...+..++|||||+ ++.++++.|+++
T Consensus       266 ~~~~a~~~~~~----~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         266 FQMVAKLKNTD----GIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             SSCEEEETTTT----EEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             ceeEEEcCCCC----EEEEEecCCCceeecCCceEEEEECCCC-cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeE
Confidence             0001122222    11111111  111111223444443222 2222332 234688899999997 454788889999


Q ss_pred             cceeeec
Q 007234          375 RGRYVQN  381 (612)
Q Consensus       375 ~~w~~~~  381 (612)
                      ++|+...
T Consensus       340 ~v~D~~t  346 (368)
T d1mdah_         340 DIYDAAS  346 (368)
T ss_dssp             EEEESSS
T ss_pred             EEEECCC
Confidence            9999743

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.15  E-value=1.7e-09  Score=108.59  Aligned_cols=130  Identities=16%  Similarity=0.124  Sum_probs=97.9

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEecc-----------------------------CCCCCeEEEEEecCCCEEEEEe-cC
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSD-----------------------------CHPGGVSAISFATHGSCIYSAG-AD  138 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~-----------------------------~h~~~V~~l~~sp~~~~l~s~s-~d  138 (612)
                      +++|+.+|+|.+|++.+++.+.++.-                             .|........++|||++|+++. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56677899999999999998876521                             1223344555679999987665 67


Q ss_pred             CcEEEEECCCCceeEEEec-CCCCeeEEEECCCCCE--EEEeC-Ce------------------EEEEEcCCCeeEEEEe
Q 007234          139 GMVCEIDPLTGSLLGKFRA-STKGISCMAVSSDGKM--LATAA-GQ------------------LKTFNCSDHKKMQKFS  196 (612)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~--l~~~~-g~------------------i~lwd~~~~~~~~~~~  196 (612)
                      ++|.++|+.+++....+.. ....+..++|+|+|+.  ++..+ ..                  +..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999999998887764 3568899999999995  43332 33                  3558888888877776


Q ss_pred             cCCCCEEEEEEeeCCcEEEEEEc
Q 007234          197 GHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       197 ~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      .. +....+.|+|+|+++++++.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEES
T ss_pred             cC-CCccceEECCCCCEEEEEec
Confidence            44 34678999999999988874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=9.6e-08  Score=91.08  Aligned_cols=241  Identities=14%  Similarity=0.166  Sum_probs=155.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++++|+|+.+++-...++|++||.+ |+.+..+...... ...           ......+.+....        +..++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-~~~-----------~~~p~~~~~~~~~--------~~~~~   86 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-DSQ-----------LLYPNRVAVVRNS--------GDIIV   86 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-TTC-----------BSSEEEEEEETTT--------TEEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-ccc-----------ccccccccccccc--------cccce
Confidence            4999999988877778899999965 7777776422111 000           1111122222221        33333


Q ss_pred             EE-ECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec--CCCCeeEEEE
Q 007234           91 LG-TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAV  167 (612)
Q Consensus        91 ~g-s~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~  167 (612)
                      +. +.++.|..++. .+.....+.........++++.++|..+++....+.+.+++. .++.+..+..  +......+++
T Consensus        87 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          87 TERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             EECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEE
T ss_pred             eccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeee
Confidence            33 33445777775 455555554455667889999999988887777788888885 5677776643  3447788999


Q ss_pred             CCCCCEEEEeC--CeEEEEEcCCCeeEEEEe--cCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEee
Q 007234          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (612)
Q Consensus       168 spdg~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (612)
                      .++|+++++..  +.|++||. .++.+.++.  ++......|++.++|+.+++-...++.|.+|+.. ++..   ..+..
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~---~~~~~  239 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI---SALES  239 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE---EEEEE
T ss_pred             ccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE---EEEeC
Confidence            99998877766  89999996 456666663  3455678999999999776644334579999854 4322   11221


Q ss_pred             cCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      .........+++.     ++|.+++ ++.++.|++|......
T Consensus       240 ~~~~~~p~~vav~-----~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         240 KVKHAQCFDVALM-----DDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSCCSCEEEEEEE-----TTTEEEE-EETTTEEEEEECSCCC
T ss_pred             CCCCCCEeEEEEe-----CCCcEEE-EeCCCeEEEEEeeeec
Confidence            2222233455665     8887554 5678899999876653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=1.6e-08  Score=100.64  Aligned_cols=281  Identities=11%  Similarity=0.031  Sum_probs=155.3

Q ss_pred             EEEEEEC--CCcEEE--EEcCCCeEE--EEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCC-CceeEEE-ecCC
Q 007234           88 LLVLGTG--GGDVLA--LAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKF-RAST  159 (612)
Q Consensus        88 ~l~~gs~--~g~I~v--wd~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-~~~~~~~-~~~~  159 (612)
                      .|++|+-  +|.|.+  +|.++++..  ..........+..++|+|+++.|++++. +.+..|.+.. +...... ....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            4777764  556654  556666542  2222234556778999999999988865 5577776553 2232221 1223


Q ss_pred             CCeeEEEECCCCCE--EEEeC---CeEEEEEcCC-C------------ee---EEEE-ecCCCCEEEEEEeeCCcEEEEE
Q 007234          160 KGISCMAVSSDGKM--LATAA---GQLKTFNCSD-H------------KK---MQKF-SGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       160 ~~v~~l~~spdg~~--l~~~~---g~i~lwd~~~-~------------~~---~~~~-~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      .....+.++++++.  ++++.   +++..+.+.. +            +.   .... ......+.++.|+|||++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            35677888999984  44443   5666554422 1            11   1111 1122347899999999999998


Q ss_pred             EcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEec-CCcEEEEECCCcceecccCCcee-
Q 007234          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKI-  295 (612)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~~~~~-  295 (612)
                      ......|.+|+....................-...+.|+     |+++++.+..+ +++|.+|+............... 
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-----pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-----PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-----CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            766778999987654322111111112233445667776     99999877765 78999999866543211110000 


Q ss_pred             -----------------EeecccccCCCCcccchhhhcccc-cceecCCCceEEEE-eCCccCceEEEe-----eccCCC
Q 007234          296 -----------------LSSSEDVNSKSQKSATAAIFAAKL-QDIVKPASVHTFVA-YGLLLKPSFQKI-----LVNSGE  351 (612)
Q Consensus       296 -----------------~~~~~~~~s~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~-~g~~~~~~~~~~-----~~h~~~  351 (612)
                                       .......++|+++    .++++.. +....  .+.+... .+. .....+..     ......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~----~lyvsnr~~~~~~--~~~i~~~~~~~-~g~~~~~~~~~~~~~~G~~  310 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGK----YMFASSRANKFEL--QGYIAGFKLRD-CGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSS----EEEEEEEESSTTS--CCEEEEEEECT-TSCEEEEEEEEECSSCCTT
T ss_pred             cccccccccccccccccCCccceEECCCCC----EEEEEcccCCCcc--ceEEEEEEecC-CCceeeEeEeeEEEcCCCC
Confidence                             0111223566666    4444332 11101  1111111 111 11111111     112234


Q ss_pred             eEEEEecC-CCceEeccccceeeecceeeec
Q 007234          352 DINLNCSQ-DGVLLPMSQSLLKSKRGRYVQN  381 (612)
Q Consensus       352 v~~l~~S~-dg~~l~~s~s~d~~~~~w~~~~  381 (612)
                      -..++++| +|++|.++...++.+.+|++..
T Consensus       311 p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            56788998 8999878888899999998744

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=4.5e-08  Score=97.36  Aligned_cols=162  Identities=14%  Similarity=0.192  Sum_probs=101.1

Q ss_pred             CCCeEEEEEecCCCEEEEEec-CCcEEEEECCC-Ccee--EEEec--CCCCeeEEEECCCCCEEEEeC---CeEEEEEcC
Q 007234          117 PGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GSLL--GKFRA--STKGISCMAVSSDGKMLATAA---GQLKTFNCS  187 (612)
Q Consensus       117 ~~~V~~l~~sp~~~~l~s~s~-dg~v~iwd~~~-~~~~--~~~~~--~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~  187 (612)
                      ...+.++.|+|+|+++++++. ...|.+|+... +...  .....  .......++|+|+|+++++..   ++|.+|++.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            345789999999999888864 45788887543 3322  22222  245789999999999987765   799999987


Q ss_pred             CCeeE--EE---Ee--------------cCCCCEEEEEEeeCCcEEEEEEcCCC-----eEEEEEcCCCcccc-ceeeEe
Q 007234          188 DHKKM--QK---FS--------------GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQS-ASCVLA  242 (612)
Q Consensus       188 ~~~~~--~~---~~--------------~h~~~v~~l~~sp~~~~l~s~s~~d~-----~i~vwd~~~~~~~~-~~~~~~  242 (612)
                      .++..  ..   ..              .+......+.++|+|++++++...+.     .|..|++....... ......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65422  11   11              11123567899999999988753333     37777776543221 011111


Q ss_pred             ecCCceeEEeEEecCCccCC-CCcEEEEEe-cCCcEEEEECCC
Q 007234          243 MEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQN  283 (612)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~-~~~~l~t~s-~dg~i~iwd~~~  283 (612)
                      ..........+.++     | +|++|+++. .++.|.+|+...
T Consensus       304 ~~~~G~~p~~i~~~-----p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         304 TPTSGGHSNAVSPC-----PWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSCCTTCCCEEEC-----TTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcCCCCccEEEec-----CCCCCEEEEEeCCCCeEEEEEEeC
Confidence            11111122334555     6 789887775 578999997643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.96  E-value=1.3e-09  Score=112.85  Aligned_cols=149  Identities=14%  Similarity=0.092  Sum_probs=110.8

Q ss_pred             eeEEEeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEec----cCCCCCeEEEEEecCCCEEEEEec------
Q 007234           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFATHGSCIYSAGA------  137 (612)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~s~s~------  137 (612)
                      ...+.|.+.         ++++.  ..+|.+.+||+.+++....+.    ..|...|.++.|||||++|+.++.      
T Consensus        19 ~~~~~W~~d---------~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r   87 (470)
T d2bgra1          19 LYSLRWISD---------HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (470)
T ss_dssp             CCCCEECSS---------SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             ccCCEeCCC---------CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceee
Confidence            345667764         44443  567889999999998764332    345578999999999999988753      


Q ss_pred             ---CCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecC---------------
Q 007234          138 ---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH---------------  198 (612)
Q Consensus       138 ---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h---------------  198 (612)
                         ++.+.+||+.+++. ..+..+...+..+.|||||+.+|... +.+++|+..+++..+....+               
T Consensus        88 ~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1          88 HSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             SCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeee
Confidence               56789999998874 45677788899999999999999887 89999999988765543221               


Q ss_pred             ---CCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          199 ---PGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       199 ---~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                         .+....+.|||||++++.....+..+..|.
T Consensus       167 ~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             eeecCCccccEECCCCCccceeEecCCcCceEE
Confidence               123456789999999998864334344444

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=9.5e-08  Score=90.05  Aligned_cols=231  Identities=9%  Similarity=-0.039  Sum_probs=134.7

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      .++++++|+.+++. +..+.+..++..+.............                  ...+++.+.         +.+
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------p~gvav~~~---------g~i   70 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ------------------PQGLAVDGA---------GTV   70 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCS------------------CCCEEECTT---------CCE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccC------------------ceEEEEcCC---------CCE
Confidence            44999999966654 44577777766544322211110111                  112222221         555


Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEEC
Q 007234           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (612)
Q Consensus        89 l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s  168 (612)
                      +++...++.+++++-..+..+...  .......++++.++++.+++-..+..+..++...................++++
T Consensus        71 ~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          71 YVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             EEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred             EEeeeeeceeeeeeeccceeeeee--eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence            555444444666655545443222  233567899999999877776667778888765443322212223456899999


Q ss_pred             CCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC
Q 007234          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       169 pdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      |+|+++++..  +.|..+|.+...........-.....+++.++|+++++.. ..+.|..++.......    ... ...
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~~----~~~-~~~  222 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST----VLP-FTG  222 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCCE----ECC-CCS
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeEE----EEc-cCC
Confidence            9999877665  7899999876544332234455678999999998766654 6778888876554321    111 111


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCCcEEEEE
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd  280 (612)
                      -.....+++.     ++|.++++-..+++|+.++
T Consensus       223 ~~~P~~i~~d-----~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         223 LNTPLAVAVD-----SDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCCEEEEEEC-----TTCCEEEEEGGGTEEEEEC
T ss_pred             CCCeEEEEEe-----CCCCEEEEECCCCEEEEEe
Confidence            1233456665     7888777766677776554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.86  E-value=3.1e-07  Score=88.57  Aligned_cols=224  Identities=10%  Similarity=0.037  Sum_probs=138.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++++|||+++++...+++|..||... +.. .+......+.                  ++++.+.         +++++
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~-~~~~~~~~~~------------------gla~~~d---------G~l~v   83 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPDG-NQQ-IHATVEGKVS------------------GLAFTSN---------GDLVA   83 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC-CEE-EEEECSSEEE------------------EEEECTT---------SCEEE
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCCC-CEE-EEEcCCCCcc------------------eEEEcCC---------CCeEE
Confidence            49999999999988899998888653 332 2322223333                  3333332         78888


Q ss_pred             EEECCCcEEEEEcCCC--eEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec----------C
Q 007234           91 LGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----------S  158 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----------~  158 (612)
                      +...++.+..|+....  ...............++.+.++++++++.+.++.+..+|...+........          .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  163 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             EecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCc
Confidence            8888888888876543  222222223456789999999999888888899999999887654332221          1


Q ss_pred             CCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeE---EEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       159 ~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~---~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      ......+.++  +..++.+.   +.|+.++.......   ..+. +......++|.++|+++++.. .++.|..++....
T Consensus       164 ~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p~G~  239 (302)
T d2p4oa1         164 FPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPDRS  239 (302)
T ss_dssp             SCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB-TTCCEEEECTTCC
T ss_pred             cccccccccc--CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEc-CCCcEEEECCCCC
Confidence            1234556665  34444443   78888887654321   1222 223346799999999766654 6788888876543


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecC
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~d  273 (612)
                      ..    .+..........+.++|...  ++|++.|++++..
T Consensus       240 ~~----~~~~~~~~~~~pt~vafg~~--~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         240 TT----IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG  274 (302)
T ss_dssp             EE----EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred             EE----EEEecCCCCCCceEEEEcCC--CCCCCEEEEECCC
Confidence            21    12223333344566777421  1677877766554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.79  E-value=2.9e-06  Score=81.88  Aligned_cols=234  Identities=14%  Similarity=0.133  Sum_probs=141.0

Q ss_pred             EEcCCCCEEEEEeC-------CCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           12 SFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        12 ~fspdg~~las~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      +|+|||+++++...       +|+|..||..++............              .......+.+.+.        
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~--------------~~g~P~Gl~~~~d--------   81 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG--------------YGGIPAGCQCDRD--------   81 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT--------------EECCEEEEEECSS--------
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcccc--------------CCCcceeEEEeCC--------
Confidence            89999997776432       467888998887754432211100              0011223333322        


Q ss_pred             CCcEEEEEECCCcEEEEEcCCCeEEEEeccCCC----CCeEEEEEecCCCEEEEEec---------------CCcEEEEE
Q 007234           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA---------------DGMVCEID  145 (612)
Q Consensus        85 ~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~s~s~---------------dg~v~iwd  145 (612)
                       +..++++...+.|..++...+...... ....    ...+++.+.++|...++-..               +|.|..++
T Consensus        82 -g~~l~vad~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~  159 (314)
T d1pjxa_          82 -ANQLFVADMRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             -SSEEEEEETTTEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             -CCEEEEEECCCeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEe
Confidence             667788877777889998766543211 1111    13578999999987776422               23455555


Q ss_pred             CCCCceeEEEecCCCCeeEEEECCCCC----EEEEeC---CeEEEEEcCCCeeE------EEEec-CCCCEEEEEEeeCC
Q 007234          146 PLTGSLLGKFRASTKGISCMAVSSDGK----MLATAA---GQLKTFNCSDHKKM------QKFSG-HPGAVRFMTFSDNG  211 (612)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~spdg~----~l~~~~---g~i~lwd~~~~~~~------~~~~~-h~~~v~~l~~sp~~  211 (612)
                      . .++...... .-...+.++|+|++.    .|+++.   +.|+.||+.....+      ..+.+ +......+++.++|
T Consensus       160 ~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G  237 (314)
T d1pjxa_         160 T-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             T-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             e-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence            4 344333322 233457899998765    455443   78988887543222      22222 22335689999999


Q ss_pred             cEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEE-EEEecCCcEEEEECC
Q 007234          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQ  282 (612)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~t~s~dg~i~iwd~~  282 (612)
                      +..++.. ..+.|.+||.+.+...     ..+..+....+.++|.     ++++.| ++.+.+|.|..+++.
T Consensus       238 nlyVa~~-~~g~I~~~dp~~g~~~-----~~i~~p~~~~t~~afg-----~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         238 NLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECS
T ss_pred             cEEEEEc-CCCEEEEEeCCCCEEE-----EEEECCCCCEEEEEEe-----CCCCEEEEEECCCCcEEEEECC
Confidence            9777654 5789999998877533     2233334455677787     888754 555677888888853

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.2e-07  Score=94.05  Aligned_cols=198  Identities=8%  Similarity=0.053  Sum_probs=120.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEE
Q 007234           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (612)
Q Consensus        12 ~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (612)
                      .|.+++.++.. ..+|.|.+||+.+++....+....-.               ........|. ++        ++.++.
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~S-pD--------~~~vl~   77 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEIS-PD--------REYALF   77 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEEC-TT--------SSEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcccc---------------ccccceeEEC-CC--------CCeEEE
Confidence            68888887643 45789999999988765444321110               0111122222 22        566666


Q ss_pred             EEC---------CCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-C
Q 007234           92 GTG---------GGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-K  160 (612)
Q Consensus        92 gs~---------~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~  160 (612)
                      ...         .|.+.+||+.++....-. .......+....|||||+.++-.. ++.|.+.+...+..++...... .
T Consensus        78 ~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~  156 (465)
T d1xfda1          78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG  156 (465)
T ss_dssp             EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT
T ss_pred             EEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc
Confidence            643         467899999988764221 122344566789999999988774 6778888887776655443221 1


Q ss_pred             C-----------------eeEEEECCCCCEEEEeC---Ce---------------------------------EEEEEcC
Q 007234          161 G-----------------ISCMAVSSDGKMLATAA---GQ---------------------------------LKTFNCS  187 (612)
Q Consensus       161 ~-----------------v~~l~~spdg~~l~~~~---g~---------------------------------i~lwd~~  187 (612)
                      .                 -..+-|||||++||...   ..                                 +.++|+.
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~  236 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence            1                 14678999999999753   22                                 3444544


Q ss_pred             CCeeEEEE------ecCCCCEEEEEEeeCCcEEEEEEcCCC---eEEEEEcCCCccc
Q 007234          188 DHKKMQKF------SGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQ  235 (612)
Q Consensus       188 ~~~~~~~~------~~h~~~v~~l~~sp~~~~l~s~s~~d~---~i~vwd~~~~~~~  235 (612)
                      ++......      ......+..+.|+|+++.++.....+.   .+.++|..+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            33221111      111223677899999987666543232   5778888887644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.71  E-value=9.2e-06  Score=78.27  Aligned_cols=184  Identities=11%  Similarity=0.034  Sum_probs=113.6

Q ss_pred             CCcEEEEEcCCCeEEEEecc---CCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC----CCeeEEEE
Q 007234           95 GGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST----KGISCMAV  167 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~----~~v~~l~~  167 (612)
                      +|.|..||..++........   ...+.-.++.|.++++.++++...+.|..+|...+..........    ...+.+++
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            46789999988875432211   112346789999999988888877789999976543222111111    13578999


Q ss_pred             CCCCCEEEEeC-----------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCc----EEEEEEcCCCeEEE
Q 007234          168 SSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK----YVLSSAVGERYIAL  226 (612)
Q Consensus       168 spdg~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~----~l~s~s~~d~~i~v  226 (612)
                      .|+|++.++-.                 |.|+.++.. ++... +...-...+.++|+|++.    .|+.+....+.|..
T Consensus       125 d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~  202 (314)
T d1pjxa_         125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             CCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEE
Confidence            99999888743                 235555442 33332 222333457899999864    56555556888999


Q ss_pred             EEcCCCccccceee-EeecC-CceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcc
Q 007234          227 WRTDGVKKQSASCV-LAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (612)
Q Consensus       227 wd~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~  285 (612)
                      |++..........+ ..+.. .......+++.     .+|++.++....+.|.+||.+.++
T Consensus       203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-----~~GnlyVa~~~~g~I~~~dp~~g~  258 (314)
T d1pjxa_         203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred             eeccCccccceeeEEEEccccccccceeeEEe-----cCCcEEEEEcCCCEEEEEeCCCCE
Confidence            98765432211111 11111 12234566676     889888877788899999876554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.71  E-value=4.7e-06  Score=80.59  Aligned_cols=224  Identities=12%  Similarity=0.103  Sum_probs=132.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++|+++|+++++-...|+|..||..++.....+.........+++.++                           +.+++
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d---------------------------G~l~v   97 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD---------------------------GRLFV   97 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT---------------------------SCEEE
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC---------------------------CCEEE
Confidence            389999997777667889999998877665554333322233333322                           56555


Q ss_pred             EEECC----CcEEEEEcCCCeEEEEecc-CCCCCeEEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEEecCC
Q 007234           91 LGTGG----GDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST  159 (612)
Q Consensus        91 ~gs~~----g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~  159 (612)
                      +...+    +.+...+...+........ .-......+.+.++|++.++...      .+.+..++... +.+..+...-
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~  176 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNI  176 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeecc
Confidence            54432    2355556665554433321 11345788999999986665422      23466666543 3333333333


Q ss_pred             CCeeEEEECCCCCEEEEeC---CeEEEEEcCCC-eeEE----E---EecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEE
Q 007234          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQ----K---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~-~~~~----~---~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd  228 (612)
                      ...+.++|+||++.|+.+.   +.|+.||+... ....    .   ..........+++.++|++.++.. ..+.|.+|+
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g~V~~~~  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTTEEEEEC
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCCEEEEEC
Confidence            4568899999999877665   89999998643 1111    1   111122356799999999777665 689999999


Q ss_pred             cCCCccccceeeEeec----CCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          229 TDGVKKQSASCVLAME----HPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       229 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      . .++..   ....+.    .......+++|.     +++..+++.+.
T Consensus       256 p-~G~~l---~~i~~P~~~~~~~~~~~~~~~~-----~~~~~~~~t~~  294 (319)
T d2dg1a1         256 K-RGYPI---GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSN  294 (319)
T ss_dssp             T-TSCEE---EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEE
T ss_pred             C-CCcEE---EEEeCCCcCCCcCceeeeEEEe-----CCCCEEEEEcC
Confidence            6 45433   111221    112234566675     66666666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=2.1e-05  Score=73.40  Aligned_cols=235  Identities=9%  Similarity=-0.018  Sum_probs=130.1

Q ss_pred             cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC---cEEEEECCCCceeEEEecCCCCeeEEEECCCCCE
Q 007234           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (612)
Q Consensus        97 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~  173 (612)
                      +|.|.|....... .+. .+...+...+|||||+.|+-.....   .+.+.+...+... .+..+........|+|+|+.
T Consensus        20 ~l~i~d~dG~~~~-~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCE-EEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcE-EEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCe
Confidence            3677776654443 332 2567788999999999998765433   4666777665543 44446677889999999999


Q ss_pred             EEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe--EEEEEcCCCccccceeeEeecCC
Q 007234          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (612)
Q Consensus       174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (612)
                      ++...   +  .+..+........ ....+........+++++..++..+..++.  |.+.++..+...      .....
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~------~~~~~  169 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------RITWE  169 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE------ECCCS
T ss_pred             eeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccce------eeecc
Confidence            98755   3  3334443333332 333344455566788888766666545554  445555554322      11222


Q ss_pred             ceeEEeEEecCCccCCCCcEEEEEecCC---cEEEEECCCcceecccCCceeEeecccccCCCCcccchhhhccccccee
Q 007234          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (612)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~i~~~~~d~~~  323 (612)
                      ........++     |+++.++..+.++   .+.+.+...+.............   ..++|+++    .|+..+..+  
T Consensus       170 ~~~~~~~~~s-----pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---p~~SPDG~----~i~f~s~~~--  235 (269)
T d2hqsa1         170 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDET---PSLAPNGT----MVIYSSSQG--  235 (269)
T ss_dssp             SSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEE---EEECTTSS----EEEEEEEET--
T ss_pred             cccccccccc-----cccceeEEEeecCCceeeeEeecccccceEeecCccccc---eEECCCCC----EEEEEEcCC--
Confidence            3333444565     8999888876644   44445555544322222211111   13889998    554433321  


Q ss_pred             cCCCceEEEEeCCccCceEEEeeccCCCeEEEEecC
Q 007234          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (612)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~l~~S~  359 (612)
                        ....+.+..-  .....+.+....+.+...+|||
T Consensus       236 --~~~~l~~~~~--dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         236 --MGSVLNLVST--DGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             --TEEEEEEEET--TSCCEEECCCSSSEEEEEEECC
T ss_pred             --CCcEEEEEEC--CCCCEEEEeCCCCcEEeEEeCC
Confidence              0112222221  1112234555555667777877

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.2e-05  Score=75.19  Aligned_cols=217  Identities=13%  Similarity=0.101  Sum_probs=131.3

Q ss_pred             cEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc---EEEEEcC
Q 007234           28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD---VLALAVS  104 (612)
Q Consensus        28 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~---I~vwd~~  104 (612)
                      .|.|.|...+.... +......+....|+++                           |+.||.......   +.+.+..
T Consensus        20 ~l~i~d~dG~~~~~-l~~~~~~~~sP~wSPD---------------------------Gk~IAf~~~~~~~~~~~~~~~~   71 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPD---------------------------GSKLAYVTFESGRSALVIQTLA   71 (269)
T ss_dssp             EEEEEETTSCSCEE-EEEESSCEEEEEECTT---------------------------SSEEEEEECTTSSCEEEEEETT
T ss_pred             EEEEEcCCCCCcEE-EecCCCceeeeEECCC---------------------------CCEEEEEEeeccCcceeeeecc
Confidence            47777876444433 3333444455556655                           777776655443   7777777


Q ss_pred             CCeEEEEeccCCCCCeEEEEEecCCCEEEEEec-CCc--EEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---
Q 007234          105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---  178 (612)
Q Consensus       105 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---  178 (612)
                      .+......  .+........|+|+|+.++.... ++.  +..+........ .............+++++..++..+   
T Consensus        72 ~~~~~~~~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (269)
T d2hqsa1          72 NGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQA  148 (269)
T ss_dssp             TCCEEEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             cCceeEEe--eeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceeccccc
Confidence            77664333  46788899999999998876653 333  333333333222 2222344455667888877666544   


Q ss_pred             C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEec
Q 007234          179 G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID  256 (612)
Q Consensus       179 g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (612)
                      |  .|.+.+...+.. ..+..+........|+|+++.++..+...+...+|........   . ....... ......|+
T Consensus       149 g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~~~~-~~~~p~~S  222 (269)
T d2hqsa1         149 GRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLA  222 (269)
T ss_dssp             SSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEEC
T ss_pred             CCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeeccccc---c-eEeecCc-cccceEEC
Confidence            3  677778777644 3344566677788999999998887755665555554433222   1 1111222 22334576


Q ss_pred             CCccCCCCcEEEEEecC---CcEEEEECCCcce
Q 007234          257 NGGVDDAGLYVLAISET---GVCYIWYGQNIEE  286 (612)
Q Consensus       257 ~~~~~~~~~~l~t~s~d---g~i~iwd~~~~~~  286 (612)
                           |||+.|+..+..   ..|+++++..+..
T Consensus       223 -----PDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         223 -----PNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             -----TTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             -----CCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence                 999998766543   3788899877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.55  E-value=2.2e-05  Score=75.69  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=127.6

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec----CCcEEEEECCCCceeEEEecC--C
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRAS--T  159 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~--~  159 (612)
                      +++.++-..+|.|..|++.++....... .......+++++++|+++++...    .+.+...+...+.........  .
T Consensus        51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  129 (319)
T d2dg1a1          51 GQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  129 (319)
T ss_dssp             SCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc
Confidence            6777777788889999998876654442 34567899999999987766543    234556665555544433321  2


Q ss_pred             CCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCC
Q 007234          160 KGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (612)
Q Consensus       160 ~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~  231 (612)
                      ..+..+++.|+|++.++..        +.++.++...+. +..+...-...+.++|+|+++.|+.+....+.|..|++..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            3578899999999877643        346666655443 3333323344678999999998777766788999999875


Q ss_pred             Cccccce---eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          232 VKKQSAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       232 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                      .......   ..............+++.     .+|++.++....|.|.+||. .|+.+..
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD-----~~G~l~Va~~~~g~V~~~~p-~G~~l~~  263 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCID-----SDDNLYVAMYGQGRVLVFNK-RGYPIGQ  263 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEB-----TTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             CCceeccccceeeeccCCccceeeeeEc-----CCCCEEEEEcCCCEEEEECC-CCcEEEE
Confidence            4221100   111111222234567776     89998888888999999995 5766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=3e-06  Score=79.40  Aligned_cols=188  Identities=9%  Similarity=0.038  Sum_probs=116.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        11 ~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      ++++++|+++++....+.+++++-.++..+....+.                   .....+++.+.         +.+++
T Consensus        62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~-------------------~~p~~iavd~~---------g~i~v  113 (260)
T d1rwia_          62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL-------------------NYPEGLAVDTQ---------GAVYV  113 (260)
T ss_dssp             EEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC-------------------CSEEEEEECTT---------CCEEE
T ss_pred             EEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee-------------------eeccccccccc---------ceeEe
Confidence            489999998777766667777665555443222110                   11223333321         45555


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCCCCeeEEEECCC
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spd  170 (612)
                      .-..+..+..++.......... ..-.....++++.++++.+++...++.|..+|.............-.....|++.++
T Consensus       114 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         114 ADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             EEGGGTEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eccccccccccccccceeeeee-ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeee
Confidence            5445555777766554432221 222345679999999998888888889999997655433322233456789999999


Q ss_pred             CCEEEEeC--CeEEEEEcCCCeeEEEE-ecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEc
Q 007234          171 GKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (612)
Q Consensus       171 g~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~  229 (612)
                      |+++++..  +.|..++...... ..+ ...-.....|++.++|..+++-. .++.|+.++.
T Consensus       193 g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~-~~~rI~~i~~  252 (260)
T d1rwia_         193 GTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTS  252 (260)
T ss_dssp             CCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEG-GGTEEEEECC
T ss_pred             eeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEEC-CCCEEEEEeC
Confidence            99887776  6788887654432 222 22234568999999998666543 5666665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=4e-05  Score=72.87  Aligned_cols=194  Identities=13%  Similarity=0.036  Sum_probs=131.2

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecC----CCC
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG  161 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~  161 (612)
                      +.+..+--..+.|..||+.+++...-.   ....+.++++.++|.++++ +.+ .+..+|..+++........    ...
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccc
Confidence            555555557788999999998764222   3457889999998876554 444 5889999988764433221    125


Q ss_pred             eeEEEECCCCCEEEEeC------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          162 ISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ++.+.+.|+|++.++..      +.-.+|.+..++....+.+ -...+.++|+++++.++.+.+..+.|..++++.....
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence            78999999999877653      3556777777766555443 3345789999999987777667888999987643211


Q ss_pred             --c-ceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecccC
Q 007234          236 --S-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (612)
Q Consensus       236 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~  291 (612)
                        . ................+++.     .+|++.++.-..|.|..||. .++.+..+.
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD-----~~GnlWva~~~~g~V~~~dp-~G~~~~~i~  236 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT-DGNHIARYE  236 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             cccceEEEeccCcccccccceEEc-----CCCCEEeeeeCCCceEEecC-CCcEeeEec
Confidence              0 11112222334456667776     88988777777889999995 576665544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.47  E-value=1.6e-05  Score=76.12  Aligned_cols=184  Identities=11%  Similarity=0.088  Sum_probs=121.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCce-eEEEe--cCCCCe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR--ASTKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~--~~~~~v  162 (612)
                      ++++++...++.|..|+.......  + ......+.+++|+++|+++++...++.+..|+...... ...+.  ......
T Consensus        39 G~l~vt~~~~~~I~~i~p~g~~~~--~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (302)
T d2p4oa1          39 GTIFVTNHEVGEIVSITPDGNQQI--H-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  115 (302)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEE--E-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCEEEEeCCCCEEEEEeCCCCEEE--E-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcccc
Confidence            788888888999999997654332  2 23557899999999999888888888888887654321 22222  233468


Q ss_pred             eEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEec----------CCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcC
Q 007234          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~----------h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~  230 (612)
                      ..+++.++|+++++.+  +.++.+|..++........          .......+.+.  +..++.+....+.|..++..
T Consensus       116 n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         116 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBC
T ss_pred             ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccc
Confidence            8999999999888876  7888889887754332211          11234556554  45566665678888888887


Q ss_pred             CCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECC
Q 007234          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (612)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~  282 (612)
                      ............   .......+++.     ++|++.++...++.|..++..
T Consensus       194 ~~~~~~~~~~~~---~~~~pdgia~d-----~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         194 STDKPGEPEIFV---EQTNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             TTSCBCCCEEEE---ESCCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred             cccccccccccc---CCCCCcceEEC-----CCCCEEEEEcCCCcEEEECCC
Confidence            654331111111   11223446665     888887777778888888654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=5.8e-05  Score=71.09  Aligned_cols=143  Identities=13%  Similarity=0.167  Sum_probs=103.7

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec--CCCCe
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGI  162 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~v  162 (612)
                      +.++++....+.+.+++... +.+..+ ...+......+++.++++.+++....+.|++||. +++.+.++..  .....
T Consensus       125 G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         125 GRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYP  202 (279)
T ss_dssp             SCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSE
T ss_pred             CcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCC
Confidence            55555555566677777653 334333 2346677889999999988888888899999995 5777777642  33467


Q ss_pred             eEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       163 ~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      ..|++.|+|+++++-.   +.|.+|+ .+|+.+..+...  ......+++.|+|.+++ +. .++.|++|......
T Consensus       203 ~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~-~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         203 IGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-AS-KDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EE-TTTEEEEEECSCCC
T ss_pred             cccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-Ee-CCCeEEEEEeeeec
Confidence            8999999999887754   4799998 467777777433  34578999999997554 44 68899999987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.001  Score=62.69  Aligned_cols=217  Identities=14%  Similarity=0.079  Sum_probs=131.1

Q ss_pred             EEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEE
Q 007234           12 SFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (612)
Q Consensus        12 ~fspdg~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (612)
                      .|++....|.-. -..++|.-||..+++.. .+..                   .....++.+...         +. ++
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-------------------~~~~~~i~~~~d---------g~-l~   73 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKT-VHAL-------------------PFMGSALAKISD---------SK-QL   73 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-------------------SSCEEEEEEEET---------TE-EE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-------------------CCCcEEEEEecC---------CC-EE
Confidence            577654444433 34678888888877643 2321                   112334444432         43 44


Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCC---CCCeEEEEEecCCCEEEEEec----CCcEEEEECCCCceeEEEecCCCCee
Q 007234           91 LGTGGGDVLALAVSAGQLKWRLSDCH---PGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        91 ~gs~~g~I~vwd~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                      +++.+ .+.++|..+++...-....+   ...++++.+.|+|++.++...    .+.-.+|.+..++....+.. -....
T Consensus        74 va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~N  151 (295)
T d2ghsa1          74 IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPN  151 (295)
T ss_dssp             EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEE
T ss_pred             EEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcc
Confidence            55554 48899999987643222111   235789999999986665432    22345666666765544443 34568


Q ss_pred             EEEECCCCCEEEEeC---CeEEEEEcCCC------e--eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC
Q 007234          164 CMAVSSDGKMLATAA---GQLKTFNCSDH------K--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (612)
Q Consensus       164 ~l~~spdg~~l~~~~---g~i~lwd~~~~------~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~  232 (612)
                      .++|+++++.+..+.   +.|+.|++...      +  ....+.+..+....+++..+|++.++.- ..+.|..||.. +
T Consensus       152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~V~~~dp~-G  229 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDTD-G  229 (295)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECTT-C
T ss_pred             eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCceEEecCC-C
Confidence            899999999776654   78999887421      1  1223334455678899999998766654 57889999964 4


Q ss_pred             ccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEe
Q 007234          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (612)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s  271 (612)
                      +..     ..+.-+....++++|..    +|.+.|+..+
T Consensus       230 ~~~-----~~i~lP~~~~T~~~FGG----~d~~~LyvTt  259 (295)
T d2ghsa1         230 NHI-----ARYEVPGKQTTCPAFIG----PDASRLLVTS  259 (295)
T ss_dssp             CEE-----EEEECSCSBEEEEEEES----TTSCEEEEEE
T ss_pred             cEe-----eEecCCCCceEEEEEeC----CCCCEEEEEE
Confidence            432     33344444556777752    6665555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.3e-05  Score=76.46  Aligned_cols=176  Identities=14%  Similarity=0.050  Sum_probs=104.5

Q ss_pred             EEEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeecc--CCccccccccccccccccccceeEEEeeecccc
Q 007234           11 TSFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADI--ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (612)
Q Consensus        11 ~~fspdg~~las~s---------~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~   79 (612)
                      ..|||||++++...         ..+.+.++|+.++.........  ...+....|+++                     
T Consensus        66 ~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD---------------------  124 (465)
T d1xfda1          66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK---------------------  124 (465)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS---------------------
T ss_pred             eEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC---------------------
Confidence            38999999988764         3467889999988765432211  111222334443                     


Q ss_pred             cccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCe-----------------EEEEEecCCCEEEEEecC-CcE
Q 007234           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGAD-GMV  141 (612)
Q Consensus        80 ~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V-----------------~~l~~sp~~~~l~s~s~d-g~v  141 (612)
                            ++.+|... +++|.+.+..++..++....+....|                 .++.|||||+.|+....| ..|
T Consensus       125 ------G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V  197 (465)
T d1xfda1         125 ------GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV  197 (465)
T ss_dssp             ------TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred             ------CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccc
Confidence                  55566544 56788888877766544433332222                 478899999999887532 223


Q ss_pred             ---------------------------------EEEECCCCceeEEEec------CCCCeeEEEECCCCCEEEEeC----
Q 007234          142 ---------------------------------CEIDPLTGSLLGKFRA------STKGISCMAVSSDGKMLATAA----  178 (612)
Q Consensus       142 ---------------------------------~iwd~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~~~~----  178 (612)
                                                       .++|+.++........      ...-+..+.|+|++++++...    
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q  277 (465)
T d1xfda1         198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ  277 (465)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred             ceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcccc
Confidence                                             3334333221111100      111356789999998777654    


Q ss_pred             --CeEEEEEcCCCeeEEEEecC-CCCE----EEEEEeeCCcEE
Q 007234          179 --GQLKTFNCSDHKKMQKFSGH-PGAV----RFMTFSDNGKYV  214 (612)
Q Consensus       179 --g~i~lwd~~~~~~~~~~~~h-~~~v----~~l~~sp~~~~l  214 (612)
                        ..+.++|..++++...+..+ .+.|    ....|+|+|+.+
T Consensus       278 ~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             ccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence              37889999999875554322 2222    245789999843

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.12  E-value=0.00015  Score=67.53  Aligned_cols=228  Identities=11%  Similarity=0.049  Sum_probs=123.7

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           12 SFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        12 ~fspd--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ..|||  |+.+|..+ +|.|.+.|+.+++..+ +..+.+......|+++                           ++.|
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPD---------------------------G~~i   55 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPD---------------------------GRKI   55 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTT---------------------------SSEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCC---------------------------CCEE
Confidence            56899  99999876 4578888999888654 4444444444455554                           6666


Q ss_pred             EEEE-CCC-----cEEEEEcCCCeEEEEecc-----CCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCCcee
Q 007234           90 VLGT-GGG-----DVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLL  152 (612)
Q Consensus        90 ~~gs-~~g-----~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~~~~  152 (612)
                      +... .++     .|.+++..+++...-...     ..........|+|+|+.++.....      ..+...+...+...
T Consensus        56 af~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
T d1k32a2          56 AIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV  135 (281)
T ss_dssp             EEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred             EEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence            6443 222     378888888876532111     112345678899999988875332      23455555444332


Q ss_pred             EEEecCCCCeeEEEECCCCCEEEEeC-C------------eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          153 GKFRASTKGISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       153 ~~~~~~~~~v~~l~~spdg~~l~~~~-g------------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      ..   .........+.+++..++... .            ....+......... ...+........++++.  ++....
T Consensus       136 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~  209 (281)
T d1k32a2         136 PL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGHR--IYFITD  209 (281)
T ss_dssp             EC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETTE--EEEEEC
T ss_pred             Ee---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee-ccCCccccceeeeeccc--cceecc
Confidence            21   222233333444444444332 0            12222222232222 22334444555666654  333332


Q ss_pred             CC--CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCccee
Q 007234          220 GE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (612)
Q Consensus       220 ~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~  287 (612)
                      .+  ..|.++|+.+++..   . .+ .+....  ...++     |||+.|+. ..+|.|+++|+.+++..
T Consensus       210 ~~~~~~l~~~d~~g~~~~---~-lt-~~~~~~--~~~~S-----pDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLR---K-HT-SFTDYY--PRHLN-----TDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTSSCEEEEEETTSCSCE---E-CC-CCCSSC--EEEEE-----ESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             cccccceEEEeCCCCceE---E-ee-cCCCcc--cccCc-----CCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            33  35777788776533   1 11 112211  22355     89988776 45688999999888653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.00  E-value=0.00092  Score=69.34  Aligned_cols=256  Identities=15%  Similarity=0.109  Sum_probs=144.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---   94 (612)
                      ..+..++.||.+.-.|.++|+....+...........-+.+            +.+            +..++++..   
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p------------~v~------------~~~vivg~~~~~  171 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FVA------------KDTVLMGCSGAE  171 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEEECBCGG
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecC------------eEe------------CCeEEEeecccc
Confidence            45667788999999999999988776432111100000000            000            445666664   


Q ss_pred             ---CCcEEEEEcCCCeEEEEeccCC------------------------------------CCCe-EEEEEecCCCEEEE
Q 007234           95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PGGV-SAISFATHGSCIYS  134 (612)
Q Consensus        95 ---~g~I~vwd~~~~~~~~~~~~~h------------------------------------~~~V-~~l~~sp~~~~l~s  134 (612)
                         .|.|.-+|+.+|+.++++....                                    ...+ ...++.++...++.
T Consensus       172 ~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~  251 (571)
T d2ad6a1         172 LGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY  251 (571)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeee
Confidence               6779999999999998753210                                    1112 23466676666665


Q ss_pred             Eec----------------CCcEEEEECCCCceeEEEecCCCCe---------eEEEECCCCC---EEEEeC--CeEEEE
Q 007234          135 AGA----------------DGMVCEIDPLTGSLLGKFRASTKGI---------SCMAVSSDGK---MLATAA--GQLKTF  184 (612)
Q Consensus       135 ~s~----------------dg~v~iwd~~~~~~~~~~~~~~~~v---------~~l~~spdg~---~l~~~~--g~i~lw  184 (612)
                      +..                ...+...|.++|+.+-.++.....+         ....+..+++   .++.++  |.++++
T Consensus       252 ~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vl  331 (571)
T d2ad6a1         252 GSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             ECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEE
T ss_pred             ecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEE
Confidence            533                3468888999999988877533221         2222223443   233444  899999


Q ss_pred             EcCCCeeEEEEecCC-------------------------------------CCE--EEEEEeeCCcEEEEEEcCC----
Q 007234          185 NCSDHKKMQKFSGHP-------------------------------------GAV--RFMTFSDNGKYVLSSAVGE----  221 (612)
Q Consensus       185 d~~~~~~~~~~~~h~-------------------------------------~~v--~~l~~sp~~~~l~s~s~~d----  221 (612)
                      |.++++.+...+...                                     +..  ...+++|+...++... .+    
T Consensus       332 Dr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~-~~~~~~  410 (571)
T d2ad6a1         332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGL-NHICMD  410 (571)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE-ECEEEE
T ss_pred             ecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEec-cccccc
Confidence            999998764321100                                     000  1245667666555433 12    


Q ss_pred             ---------------------------------CeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEE
Q 007234          222 ---------------------------------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (612)
Q Consensus       222 ---------------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (612)
                                                       |.+.-+|+.+++..     ..............      ...+.+++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~-----W~~~~~~~~~~g~l------~TagglVf  479 (571)
T d2ad6a1         411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTL------YTKGGLVW  479 (571)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCE------EETTTEEE
T ss_pred             cccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCcee-----eEcCCCCCCCccee------EecCCEEE
Confidence                                             24555555555533     11111111111111      12456778


Q ss_pred             EEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234          269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (612)
Q Consensus       269 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  309 (612)
                      +++.||.++-+|.++|+.+...+-......++..+..++++
T Consensus       480 ~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         480 YATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            89999999999999999997765444433433333445553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.92  E-value=0.0021  Score=66.82  Aligned_cols=257  Identities=12%  Similarity=0.063  Sum_probs=146.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC---
Q 007234           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (612)
Q Consensus        18 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~---   94 (612)
                      .++..++.|+.|.-.|.++|+.+..+...........-+.+        .+   .             +..+++|..   
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P--------~v---~-------------~~~vivg~~~~e  177 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP--------YV---V-------------KDKVIIGSSGAE  177 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--------EE---E-------------TTEEEECCBCGG
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCC--------cE---E-------------CCeEEEeecccc
Confidence            46778888999999999999999887532111110000000        00   0             456677664   


Q ss_pred             ---CCcEEEEEcCCCeEEEEeccCC------------------------------------CC-CeEEEEEecCCCEEEE
Q 007234           95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PG-GVSAISFATHGSCIYS  134 (612)
Q Consensus        95 ---~g~I~vwd~~~~~~~~~~~~~h------------------------------------~~-~V~~l~~sp~~~~l~s  134 (612)
                         .|.|.-||+.+|+.++++....                                    .. .-..+++.+....++.
T Consensus       178 ~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~  257 (596)
T d1w6sa_         178 LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF  257 (596)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeec
Confidence               3789999999999998763210                                    01 1124466676666665


Q ss_pred             Eec----------------CCcEEEEECCCCceeEEEecCCC---------CeeEEE-ECCCCC---EEEEeC--CeEEE
Q 007234          135 AGA----------------DGMVCEIDPLTGSLLGKFRASTK---------GISCMA-VSSDGK---MLATAA--GQLKT  183 (612)
Q Consensus       135 ~s~----------------dg~v~iwd~~~~~~~~~~~~~~~---------~v~~l~-~spdg~---~l~~~~--g~i~l  183 (612)
                      +..                ...|...|.++|+.+-.++....         ....+. ...+|+   .++...  |.+++
T Consensus       258 ~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~v  337 (596)
T d1w6sa_         258 GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT  337 (596)
T ss_dssp             ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceee
Confidence            532                24588899999998887765322         111222 123443   455555  89999


Q ss_pred             EEcCCCeeEEEEecCC-------------CCE--------------------------EEEEEeeCCcEEEEEEcC----
Q 007234          184 FNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAVG----  220 (612)
Q Consensus       184 wd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l~s~s~~----  220 (612)
                      +|..+|+++...+...             .++                          ..++++|+..+++.....    
T Consensus       338 lDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~  417 (596)
T d1w6sa_         338 LDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD  417 (596)
T ss_dssp             EETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred             ecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccc
Confidence            9999998775332100             000                          123555555544443210    


Q ss_pred             ----------------------------------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcE
Q 007234          221 ----------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY  266 (612)
Q Consensus       221 ----------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (612)
                                                        -|.+.-||+.+++..     .............      ++..|.+
T Consensus       418 ~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~-----W~~~~~~~~~gg~------lsTaggl  486 (596)
T d1w6sa_         418 WEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGT------MATAGDL  486 (596)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBC------EEETTTE
T ss_pred             cccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCcee-----cccCCCCCCccce------eEecCCE
Confidence                                              134556666665532     1111111111111      1134677


Q ss_pred             EEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234          267 VLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (612)
Q Consensus       267 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  309 (612)
                      ++.|+.||.++-||.++|+.+..++........+..+..++++
T Consensus       487 VF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         487 VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            8889999999999999999997766544444433334445553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.88  E-value=0.0046  Score=59.68  Aligned_cols=258  Identities=10%  Similarity=0.043  Sum_probs=145.7

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEeeccCCccc-ccccccc---c-ccc-------cccccee-EEEe-eecccccc---c
Q 007234           20 FAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNR---L-ERE-------HLSVDYT-CMKW-LSVDRKKK---R   82 (612)
Q Consensus        20 las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~s~~---~-~~~-------~~~~~~~-~~~w-~~~~~~~~---~   82 (612)
                      |.||+..|.|+|+-+-+++.+..+........ .--|+..   + ..+       .+..... ...| ....+...   .
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            45778899999999999999888754322110 0000000   0 000       0000000 0011 00111100   0


Q ss_pred             ccCCcEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEecC------------------CcE
Q 007234           83 KLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGAD------------------GMV  141 (612)
Q Consensus        83 ~~~~~~l~~gs~-~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s~d------------------g~v  141 (612)
                      +..|+++++... ++.|-+.|+.+.++...+.......+.+++..+  +..+++.++.+                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            112677777765 566999999999886544334567788887755  44566666542                  236


Q ss_pred             EEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC-C----------------eEEEEEc------------------
Q 007234          142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNC------------------  186 (612)
Q Consensus       142 ~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g----------------~i~lwd~------------------  186 (612)
                      .++|..+.+....+... .....+.++|||+++++.+ +                .+.+++.                  
T Consensus       176 t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            67898888877766543 3567899999999998865 1                2444443                  


Q ss_pred             -----CCC---eeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccc------cceeeEeecCCceeEEe
Q 007234          187 -----SDH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SASCVLAMEHPAVFMDC  252 (612)
Q Consensus       187 -----~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~  252 (612)
                           +..   ..++.++-..+ ...+.++|||+++++++.-+.++.|+|+++-...      ...++........-.-.
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             eeecccccCCcceeEEEecCCC-CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence                 210   11222222222 3568999999999999988999999998642211      01111111111111223


Q ss_pred             EEecCCccCCCCcEEEEEecCCcEEEEECCCc
Q 007234          253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (612)
Q Consensus       253 ~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~  284 (612)
                      ..|.     ..|..-.+.--|.+|.-|++...
T Consensus       334 t~fd-----~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         334 TAFD-----GRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EEEC-----TTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccC-----CCceEEEEeeccceEEEEecchh
Confidence            4454     66654444456999999997544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.0041  Score=60.03  Aligned_cols=232  Identities=9%  Similarity=0.071  Sum_probs=136.2

Q ss_pred             EEEEcC---CCCEEEEEeC-CCcEEEEECCCCcEEEEeeccCC-ccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSP---ALDYFAICSG-DARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fsp---dg~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      .++|..   ||+|+..... +++|.+-|+++.++.+....... ..-.+...                   ..++     
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~-------------------~~p~-----  144 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQ-------------------KWPR-----  144 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEEC-------------------CSSB-----
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecc-------------------cCCC-----
Confidence            345655   8999888775 78999999999998765532111 00100000                   0111     


Q ss_pred             CCcEEEEEECC------------------CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC--------
Q 007234           85 GSSLLVLGTGG------------------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------  138 (612)
Q Consensus        85 ~~~~l~~gs~~------------------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d--------  138 (612)
                       ..+++.++..                  +.+.++|..+.+..+++.-  .+....+.++++|+++++.+.+        
T Consensus       145 -T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~  221 (459)
T d1fwxa2         145 -SNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLP  221 (459)
T ss_dssp             -CSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             -eEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchh
Confidence             3444444431                  2266889999988877753  2456789999999998887643        


Q ss_pred             ------------------------------CcEEEEECCCC---ceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEE
Q 007234          139 ------------------------------GMVCEIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLK  182 (612)
Q Consensus       139 ------------------------------g~v~iwd~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~  182 (612)
                                                    +.+.+-|.+..   ..+..+... .....+.++|||+++++++   .++.
T Consensus       222 e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVS  300 (459)
T d1fwxa2         222 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVT  300 (459)
T ss_dssp             HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred             hcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEE
Confidence                                          22344443321   122233322 3357789999999999998   7999


Q ss_pred             EEEcCCCe------------eEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCC------ccccceeeEeec
Q 007234          183 TFNCSDHK------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV------KKQSASCVLAME  244 (612)
Q Consensus       183 lwd~~~~~------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~------~~~~~~~~~~~~  244 (612)
                      ++|++.-.            ...+.. ....-..-+|...|. .+++-.-|..|.-|++...      ... ...+..+.
T Consensus       301 ViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~-aytslfids~v~kw~~~~~~~~~~~~~~-~~v~~k~~  377 (459)
T d1fwxa2         301 VLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLD  377 (459)
T ss_dssp             EEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEE
T ss_pred             EEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCce-EEEEeeccceEEEEecchhhhhhccccC-Ccceeccc
Confidence            99986321            111111 222345568888874 5666567999999998533      111 11222333


Q ss_pred             CCceeEEeEEecCCccCCCCcEEEEEec
Q 007234          245 HPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (612)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~t~s~  272 (612)
                      -+-..-.....-....+|+|++|++.+.
T Consensus       378 v~y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         378 VHYQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             CSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cccCCCCCccCcCCcCCCCCCEEEEecc
Confidence            3222222222222234599999998864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.79  E-value=0.0024  Score=65.92  Aligned_cols=242  Identities=18%  Similarity=0.214  Sum_probs=140.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC--
Q 007234           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (612)
Q Consensus        17 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~--   94 (612)
                      +..++.+..|+.|.-.|..+|+.+..+............+.+            +.+            ...++++..  
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p------------~v~------------~~~vivg~~~~  172 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP------------RVV------------KGKVIIGNGGA  172 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC------------EEE------------TTEEEECCBCT
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeee------------eee------------cCcccccccce
Confidence            346778888999999999999999877543221110000000            000            344555543  


Q ss_pred             ----CCcEEEEEcCCCeEEEEeccCC-----------------------------CCCe-EEEEEecCCCEEEEEec---
Q 007234           95 ----GGDVLALAVSAGQLKWRLSDCH-----------------------------PGGV-SAISFATHGSCIYSAGA---  137 (612)
Q Consensus        95 ----~g~I~vwd~~~~~~~~~~~~~h-----------------------------~~~V-~~l~~sp~~~~l~s~s~---  137 (612)
                          .|.|.-+|.++|+.++++....                             ...+ ..+++.+....++.+..   
T Consensus       173 ~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~  252 (560)
T d1kv9a2         173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS  252 (560)
T ss_dssp             TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             eccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCc
Confidence                2569999999999998874211                             1111 23566676666554321   


Q ss_pred             ----------------CCcEEEEECCCCceeEEEecCCCCee---------EEEECCCCC---EEEEeC--CeEEEEEcC
Q 007234          138 ----------------DGMVCEIDPLTGSLLGKFRASTKGIS---------CMAVSSDGK---MLATAA--GQLKTFNCS  187 (612)
Q Consensus       138 ----------------dg~v~iwd~~~~~~~~~~~~~~~~v~---------~l~~spdg~---~l~~~~--g~i~lwd~~  187 (612)
                                      ...|...|.++++.+-.++.....+.         -+.+..+|+   .++.+.  |.++++|..
T Consensus       253 ~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~  332 (560)
T d1kv9a2         253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT  332 (560)
T ss_dssp             SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred             ccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecC
Confidence                            24678889999998877765332221         122222342   344444  899999999


Q ss_pred             CCeeEEEEecCC-CC-----------------------------------EEEEEEeeCCcEEEEEEcC-----------
Q 007234          188 DHKKMQKFSGHP-GA-----------------------------------VRFMTFSDNGKYVLSSAVG-----------  220 (612)
Q Consensus       188 ~~~~~~~~~~h~-~~-----------------------------------v~~l~~sp~~~~l~s~s~~-----------  220 (612)
                      +++++...+.-. ..                                   -...+++|+...++.....           
T Consensus       333 tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~  412 (560)
T d1kv9a2         333 NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD  412 (560)
T ss_dssp             TCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred             CCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccc
Confidence            998875442110 00                                   0134566766665554311           


Q ss_pred             ------------------------CCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcE
Q 007234          221 ------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (612)
Q Consensus       221 ------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i  276 (612)
                                              .|.+.-||+.+++..     ............. ..     -.+.++++++.||.+
T Consensus       413 ~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~-----W~~~~~~~~~gg~-l~-----TagglVF~G~~dg~l  481 (560)
T d1kv9a2         413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGGT-LS-----TAGNLVFQGTAAGQM  481 (560)
T ss_dssp             CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEEEEECTTSEE
T ss_pred             cccccccccccCcccccCCCCcccccceEEEeCCCCeEe-----eeccCCCCCCCce-eE-----ECCCEEEEECCCCcE
Confidence                                    145667777777643     2222111111111 11     345678889999999


Q ss_pred             EEEECCCcceecccCCc
Q 007234          277 YIWYGQNIEELRNTKAT  293 (612)
Q Consensus       277 ~iwd~~~~~~~~~~~~~  293 (612)
                      +-||.++|+.+..++..
T Consensus       482 ~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         482 HAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEEETTTCCEEEEEECS
T ss_pred             EEEECCCCcEeEEEECC
Confidence            99999999999766544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.76  E-value=0.00076  Score=62.48  Aligned_cols=196  Identities=14%  Similarity=0.082  Sum_probs=98.3

Q ss_pred             EEEEcCCCCEEEEEeC-C-----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccc
Q 007234           10 LTSFSPALDYFAICSG-D-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (612)
Q Consensus        10 ~~~fspdg~~las~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (612)
                      ..+|||||++||.... +     +.|.+++..+++..+... ......           ..........|.+.       
T Consensus        45 ~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~-~~~~~~-----------~~~~~~~~~~~spd-------  105 (281)
T d1k32a2          45 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY-FSGKST-----------GRRMFTDVAGFDPD-------  105 (281)
T ss_dssp             EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC-CCEEEE-----------TTEECSEEEEECTT-------
T ss_pred             CEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee-cCCCcc-----------CccccccccccCCC-------
Confidence            3499999999996643 2     247777888777654221 111000           00111223344443       


Q ss_pred             cCCcEEEEEECCC------cEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCC-----------cEEEEEC
Q 007234           84 LGSSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----------MVCEIDP  146 (612)
Q Consensus        84 ~~~~~l~~gs~~g------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----------~v~iwd~  146 (612)
                        ++.++......      .+...+...+.....    +........+.+.+..++....+.           ....+..
T Consensus       106 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (281)
T d1k32a2         106 --GNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV  179 (281)
T ss_dssp             --CCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred             --CCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeec
Confidence              55555543321      145556555554321    223333443333333333332211           1112221


Q ss_pred             CCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCe
Q 007234          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (612)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~  223 (612)
                      ..... ..............++++........   ..|+++|+.+++.. .+..+.. .....|+|||+.|+...  ++.
T Consensus       180 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~-~~~~~~SpDG~~I~f~~--~~~  254 (281)
T d1k32a2         180 NSGAF-KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTD-YYPRHLNTDGRRILFSK--GGS  254 (281)
T ss_dssp             ETTEE-EEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCS-SCEEEEEESSSCEEEEE--TTE
T ss_pred             cccce-eeccCCccccceeeeeccccceecccccccceEEEeCCCCceE-EeecCCC-cccccCcCCCCEEEEEe--CCE
Confidence            22222 22222334445566666543333322   48999999877643 3432322 12346899999988764  678


Q ss_pred             EEEEEcCCCccc
Q 007234          224 IALWRTDGVKKQ  235 (612)
Q Consensus       224 i~vwd~~~~~~~  235 (612)
                      |+++|+.+++..
T Consensus       255 l~~~d~~~g~~~  266 (281)
T d1k32a2         255 IYIFNPDTEKIE  266 (281)
T ss_dssp             EEEECTTTCCEE
T ss_pred             EEEEECCCCCEE
Confidence            999999888643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.71  E-value=0.0038  Score=64.64  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcE
Q 007234           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I   98 (612)
                      .+..++.++.|.-+|.++|+.+.+++..........-...      ........|            ...++.++.++.+
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~------~~~~g~~~~------------~~~v~~~t~~g~l  140 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD------VVNRGVALW------------KGKVYVGAWDGRL  140 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC------SCCCCCEEE------------TTEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccc------cccccceEE------------CCcEEEEecccce
Confidence            4566777899999999999999988632221110000000      000001111            4568889999999


Q ss_pred             EEEEcCCCeEEEEeccC-CC-CCe--EEEEEecCCCEEEEEec------CCcEEEEECCCCceeEEE
Q 007234           99 LALAVSAGQLKWRLSDC-HP-GGV--SAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKF  155 (612)
Q Consensus        99 ~vwd~~~~~~~~~~~~~-h~-~~V--~~l~~sp~~~~l~s~s~------dg~v~iwd~~~~~~~~~~  155 (612)
                      .-.|..+|+.+++.... +. ..+  ++.-.-.+ ..++.++.      .|.|+.+|.++|+.+-.+
T Consensus       141 ~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             eeeccccccceecccCccCCcceEEeecceEEEe-ccEEEeeccccccccceEEEEecCCccceeee
Confidence            99999999988765321 11 111  11000012 23444432      356888888887766554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.064  Score=48.89  Aligned_cols=160  Identities=10%  Similarity=-0.049  Sum_probs=101.6

Q ss_pred             CCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC----CeEEEEEcCCCee
Q 007234          117 PGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKK  191 (612)
Q Consensus       117 ~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~----g~i~lwd~~~~~~  191 (612)
                      ...+.++++.+.+..|+.+ ...++|.+.++........+.........++++|...+|....    +.|.-.++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            3557789998766665555 4567899999876665555555556789999998666665443    4677777765544


Q ss_pred             EEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccceeeEeecCC-ceeEEeEEecCCccCCCCcEEEEE
Q 007234          192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAI  270 (612)
Q Consensus       192 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~t~  270 (612)
                      .......-....++++.+.+..|+.+....+.|...++......   .+...... ..... +++.      ++....+-
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~---~~~~~~~~~~~p~~-lav~------~~~ly~td  225 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHPFS-LAVF------EDKVFWTD  225 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSEEE-EEEE------TTEEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE---EEEeCCCcccccEE-EEEE------CCEEEEEE
Confidence            33333334567899999988878777656788999898765432   22222221 22222 3332      23444444


Q ss_pred             ecCCcEEEEECCCcce
Q 007234          271 SETGVCYIWYGQNIEE  286 (612)
Q Consensus       271 s~dg~i~iwd~~~~~~  286 (612)
                      ..++.|...+..++..
T Consensus       226 ~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         226 IINEAIFSANRLTGSD  241 (266)
T ss_dssp             TTTTEEEEEETTTCCC
T ss_pred             CCCCeEEEEECCCCcc
Confidence            4677888887766643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.035  Score=50.56  Aligned_cols=192  Identities=11%  Similarity=0.094  Sum_probs=121.5

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCC-ceeEEEecCC----C
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRAST----K  160 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~----~  160 (612)
                      ...|++-+ ..++.+||+++.+.+..+.  ...+|.--.|-.+. .|+-.. +..|+-|++... .+.+.|..|.    .
T Consensus        74 ~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~  148 (327)
T d1utca2          74 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC  148 (327)
T ss_dssp             SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCc
Confidence            45566655 5569999999999887764  34567666776544 444332 467999999543 4666666554    3


Q ss_pred             CeeEEEECCCCCEEEEeC---------CeEEEEEcCCCeeEEEEecCCCCEEEEEEe--eCCcEEEEEE---cCCCeEEE
Q 007234          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSA---VGERYIAL  226 (612)
Q Consensus       161 ~v~~l~~spdg~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~s~s---~~d~~i~v  226 (612)
                      .|..-..++++++++..+         |.+.+|..+.+ .-+.+.||.+.-..+.+.  ++...+++-+   ...+.+.+
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhI  227 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  227 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEE
Confidence            677788899999988654         68999998765 345677776544443332  1111222221   12357888


Q ss_pred             EEcCCCcc-cc---ceee---EeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          227 WRTDGVKK-QS---ASCV---LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       227 wd~~~~~~-~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .++..... ..   ...+   +..+....+.-.+..+     +.-..+...+.-|.|++||++++..+.
T Consensus       228 iEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-----~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         228 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-----ccCCEEEEEecCcEEEEEEcccccEEE
Confidence            88876321 10   1111   1112234444455555     666788899999999999999998875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.25  E-value=0.023  Score=58.23  Aligned_cols=199  Identities=17%  Similarity=0.205  Sum_probs=115.2

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCcE
Q 007234           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (612)
Q Consensus        19 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~I   98 (612)
                      .+..++.++.|.-.|.++|+.+.+++..............      ........|            +..++.++.+|.|
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~------~~~~~~~~~------------~~~v~~~~~~g~l  129 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD------AVNRGVALW------------GDKVYVGTLDGRL  129 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC------SCCCCCEEE------------BTEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccc------ccccCccee------------CCeEEEEeCCCEE
Confidence            4556777889999999999999987533221110000000      000000111            4568999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCCeEEEEEec--CCCEEEEEe------cCCcEEEEECCCCceeEEEecCC-----------
Q 007234           99 LALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST-----------  159 (612)
Q Consensus        99 ~vwd~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~-----------  159 (612)
                      .-.|..+|+.++.........-..+.-.|  .+..++.++      ..|.|..+|.++|+.+-.+..-.           
T Consensus       130 ~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~  209 (560)
T d1kv9a2         130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPE  209 (560)
T ss_dssp             EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred             EEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccc
Confidence            99999999998876432111111111111  122344443      23679999999999988875311           


Q ss_pred             -------------------CC-eeEEEECCCCCEEEEeC---------------------CeEEEEEcCCCeeEEEEecC
Q 007234          160 -------------------KG-ISCMAVSSDGKMLATAA---------------------GQLKTFNCSDHKKMQKFSGH  198 (612)
Q Consensus       160 -------------------~~-v~~l~~spdg~~l~~~~---------------------g~i~lwd~~~~~~~~~~~~h  198 (612)
                                         .. =..+++.|...+++.+.                     ..|.-.|.++++....++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~  289 (560)
T d1kv9a2         210 LREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT  289 (560)
T ss_dssp             HHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred             cccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecc
Confidence                               01 12356667766665432                     24777788999887666533


Q ss_pred             CCC---------EEEEEEeeCCc--EEEEEEcCCCeEEEEEcCCCccc
Q 007234          199 PGA---------VRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       199 ~~~---------v~~l~~sp~~~--~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ...         ..-+.+..+++  .++.....+|.+.++|..+++..
T Consensus       290 ~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         290 PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             ccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence            222         12223333443  33333447899999999888754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.071  Score=48.46  Aligned_cols=190  Identities=8%  Similarity=-0.046  Sum_probs=116.0

Q ss_pred             CcEEEEEE-CCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEE-ecCCcEEEEECCCCceeEEEecCCCCee
Q 007234           86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGIS  163 (612)
Q Consensus        86 ~~~l~~gs-~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (612)
                      .+.++... ..+.|...++..+.....+ ......+.++++..-+..|+.+ ...+.|.+.++........+......+.
T Consensus        47 ~~~iywsd~~~~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~  125 (263)
T d1npea_          47 DKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR  125 (263)
T ss_dssp             TTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCEEEEEECCCCeEEEEEcccCCcEEEE-EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc
Confidence            34444444 4566888888765544223 3334578999998766666654 4567899999875554333443345789


Q ss_pred             EEEECCCCCEEEEeC---C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCccccce
Q 007234          164 CMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (612)
Q Consensus       164 ~l~~spdg~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (612)
                      .++++|...+++...   +  .|.-.++............-.....+++.+.++.|+.+....+.|...+++.....   
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~---  202 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---  202 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE---
Confidence            999999777776543   2  35555665443333333333566899999888877776556788998888765432   


Q ss_pred             eeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceec
Q 007234          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (612)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~  288 (612)
                      .+..  ...... .+++.      ++....+-...+.|...|..+++.+.
T Consensus       203 ~v~~--~~~~P~-~lav~------~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         203 KVLE--GLQYPF-AVTSY------GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             EEEE--CCCSEE-EEEEE------TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEC--CCCCcE-EEEEE------CCEEEEEECCCCEEEEEECCCCccce
Confidence            1222  112222 23331      23444444567788888888777654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.22  E-value=0.15  Score=52.02  Aligned_cols=196  Identities=12%  Similarity=0.109  Sum_probs=113.8

Q ss_pred             EEEEe-CCCcEEEEECC-CCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEECCCc
Q 007234           20 FAICS-GDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (612)
Q Consensus        20 las~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~~g~   97 (612)
                      +..++ .++.|...|.. +|+.+.+++..............    .   ....+...           +..++.++.+|.
T Consensus        65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~----~---~~rg~a~~-----------~~~i~~~~~~g~  126 (571)
T d2ad6a1          65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----V---VDRGLAYG-----------AGQIVKKQANGH  126 (571)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----S---CCCCCEEE-----------TTEEEEECTTSE
T ss_pred             EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccC----c---CCCcceee-----------CCeEEEEeCCCc
Confidence            43444 46888888974 79999988632221111111000    0   00000110           466889999999


Q ss_pred             EEEEEcCCCeEEEEeccC---CCCCeEEEEEecCCCEEEEEe------cCCcEEEEECCCCceeEEEecCC---------
Q 007234           98 VLALAVSAGQLKWRLSDC---HPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST---------  159 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~---------  159 (612)
                      +.-.|.++|+..+.....   ....++.--.-.++ .++.+.      .+|.|+.+|..+|+.+-.+....         
T Consensus       127 l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~  205 (571)
T d2ad6a1         127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAK  205 (571)
T ss_dssp             EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred             EEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccc
Confidence            999999999988765321   11112211111233 445554      36889999999999988765321         


Q ss_pred             ----------------------------CCe-eEEEECCCCCEEEEeC------------------CeEEEEEcCCCeeE
Q 007234          160 ----------------------------KGI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKKM  192 (612)
Q Consensus       160 ----------------------------~~v-~~l~~spdg~~l~~~~------------------g~i~lwd~~~~~~~  192 (612)
                                                  ..+ ...++.++..++..+.                  ..+.-.|.++|+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~  285 (571)
T d2ad6a1         206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK  285 (571)
T ss_dssp             TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred             cccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhhe
Confidence                                        111 2345666666665443                  25778899999988


Q ss_pred             EEEecCCC---------CEEEEEEeeCCc---EEEEEEcCCCeEEEEEcCCCccc
Q 007234          193 QKFSGHPG---------AVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       193 ~~~~~h~~---------~v~~l~~sp~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      ..++.+..         +........+++   .++..+ .+|.+.+.|..+++..
T Consensus       286 W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         286 WGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI  339 (571)
T ss_dssp             EEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             ecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCCCcEe
Confidence            77764322         112223334554   334444 7899999998888743

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.17  E-value=0.04  Score=56.73  Aligned_cols=48  Identities=15%  Similarity=0.077  Sum_probs=33.5

Q ss_pred             CCCcEEEEEecCCcEEEEECCCcceecccCCceeEeecccccCCCCcc
Q 007234          262 DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (612)
Q Consensus       262 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  309 (612)
                      ..|..+++++.||.++-||.++|+.+...+........+..+..++++
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            456788889999999999999999997766443333333334445543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.1  Score=47.27  Aligned_cols=194  Identities=9%  Similarity=-0.064  Sum_probs=114.6

Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcE
Q 007234           10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (612)
Q Consensus        10 ~~~fspdg~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (612)
                      +++|++.++.+.-+. .++.|+..++..+.....+......+                ..-.+.|.           +..
T Consensus        40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p----------------~~iAvD~~-----------~~~   92 (263)
T d1npea_          40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP----------------EGIALDHL-----------GRT   92 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE----------------EEEEEETT-----------TTE
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc----------------cEEEEecc-----------CCe
Confidence            458888777666554 46778877776554433332111111                11122232           333


Q ss_pred             EE-EEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEec---CCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           89 LV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        89 l~-~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      |. +-...+.|.+.++...... .+....-....++++.|...+++-...   ...|..-++............-.....
T Consensus        93 lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~g  171 (263)
T d1npea_          93 IFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG  171 (263)
T ss_dssp             EEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE
T ss_pred             EEEeccCCCEEEEEecCCceEE-EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccce
Confidence            44 4445567889988765543 232333467899999997776664432   223555566544333333333356789


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      +++.+.++.|..+.   +.|...|+........+.+-.. ..++++.  +.+|+.+....+.|...|..+++.
T Consensus       172 laiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            99998887776654   7899999876655444454443 3567775  445655554677888888887753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.97  E-value=0.14  Score=52.49  Aligned_cols=218  Identities=9%  Similarity=0.093  Sum_probs=124.2

Q ss_pred             CCcccceeEEEEcC---------------CCCEEEEEeCCCcEEEEEC-CCCcEEEEeeccCCccccccccccccccccc
Q 007234            2 GSSNIRDILTSFSP---------------ALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLS   65 (612)
Q Consensus         2 ~s~~V~~l~~~fsp---------------dg~~las~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~   65 (612)
                      +++.|..|.++|+-               +|.++++++.++.+...|. .+|+.+.+++..........-..       .
T Consensus        33 ~~~Nv~~L~~aW~~~~~~~~~~~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~-------~  105 (596)
T d1w6sa_          33 NKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACC-------D  105 (596)
T ss_dssp             CTTTGGGEEEEEEEECSCCSCCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSS-------C
T ss_pred             CHhHhhhceEEEEEECCCCCCceeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccccccc-------c
Confidence            34566666666651               2333344455677888887 58999998863222110000000       0


Q ss_pred             cceeEE-EeeecccccccccCCcEEEEEECCCcEEEEEcCCCeEEEEeccCCC---CCeEE-EEEecCCCEEEEEec---
Q 007234           66 VDYTCM-KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA---  137 (612)
Q Consensus        66 ~~~~~~-~w~~~~~~~~~~~~~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~---~~V~~-l~~sp~~~~l~s~s~---  137 (612)
                      ....-+ .|......      ...|+.++.+|.|.-.|..+|+.++.+..+..   ..+++ -.+.  +..++.++.   
T Consensus       106 ~~~RGv~~~~~~~~~------~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e  177 (596)
T d1w6sa_         106 LVNRGLAYWPGDGKT------PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAE  177 (596)
T ss_dssp             SCCCCCEEECCCSSS------CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGG
T ss_pred             cccceeEEecCCCCC------ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CCeEEEeecccc
Confidence            001111 22211111      56789999999999999999999987742211   11111 1111  334555543   


Q ss_pred             ---CCcEEEEECCCCceeEEEecCC-------------------------------------C-CeeEEEECCCCCEEEE
Q 007234          138 ---DGMVCEIDPLTGSLLGKFRAST-------------------------------------K-GISCMAVSSDGKMLAT  176 (612)
Q Consensus       138 ---dg~v~iwd~~~~~~~~~~~~~~-------------------------------------~-~v~~l~~spdg~~l~~  176 (612)
                         .|.|+.+|..+|+.+-++....                                     . .-..+++.+...++..
T Consensus       178 ~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~  257 (596)
T d1w6sa_         178 LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF  257 (596)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeec
Confidence               4899999999999988765311                                     0 1124456676666665


Q ss_pred             eC------------------CeEEEEEcCCCeeEEEEecCCC---------CEEEEEE-eeCCc---EEEEEEcCCCeEE
Q 007234          177 AA------------------GQLKTFNCSDHKKMQKFSGHPG---------AVRFMTF-SDNGK---YVLSSAVGERYIA  225 (612)
Q Consensus       177 ~~------------------g~i~lwd~~~~~~~~~~~~h~~---------~v~~l~~-sp~~~---~l~s~s~~d~~i~  225 (612)
                      +.                  ..|.-.|+++++.+-.++....         ...-+.. ..+|+   .++... .+|.+.
T Consensus       258 ~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~  336 (596)
T d1w6sa_         258 GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVY  336 (596)
T ss_dssp             ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc-ccccee
Confidence            53                  2477889999998877753221         1111111 22343   444444 789999


Q ss_pred             EEEcCCCccc
Q 007234          226 LWRTDGVKKQ  235 (612)
Q Consensus       226 vwd~~~~~~~  235 (612)
                      ++|..+++..
T Consensus       337 vlDr~tG~~i  346 (596)
T d1w6sa_         337 TLDRTDGALV  346 (596)
T ss_dssp             EEETTTCCEE
T ss_pred             eecCCCCcee
Confidence            9999888754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.16  Score=46.20  Aligned_cols=225  Identities=12%  Similarity=0.123  Sum_probs=133.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (612)
                      ++--+|..+.||.-+ ..++.|+|+++.+.++.+.-                   ..+..--.|.+.          +.|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-------------------~e~VvfWkWis~----------~~L  116 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL----------NTV  116 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEESSS----------SEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-------------------CCCcEEEEecCC----------CEE
Confidence            345788888888776 45899999999998887652                   223445566654          344


Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCC----CCeEEEEEecCCCEEEEEe-------cCCcEEEEECCCCceeEEEecC
Q 007234           90 VLGTGGGDVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        90 ~~gs~~g~I~vwd~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~~~  158 (612)
                      +..+ +..|+-|++..........+.|.    ..|..-..++++++++..+       -.|.+.+|..+.+ .-+.+++|
T Consensus       117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh  194 (327)
T d1utca2         117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  194 (327)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred             EEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce
Confidence            4444 34599999965443333334443    4677777888899866543       2367888987644 44566777


Q ss_pred             CCCeeEEEECCC---CCEEEEeC-----CeEEEEEcCCCe----e----EEEEe-c---CCCCEEEEEEeeCCcEEEEEE
Q 007234          159 TKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDHK----K----MQKFS-G---HPGAVRFMTFSDNGKYVLSSA  218 (612)
Q Consensus       159 ~~~v~~l~~spd---g~~l~~~~-----g~i~lwd~~~~~----~----~~~~~-~---h~~~v~~l~~sp~~~~l~s~s  218 (612)
                      ......+.+.-+   .++++.+.     +.+++.++....    .    ...+. .   ...-.-++..++.-..++...
T Consensus       195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT  274 (327)
T d1utca2         195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  274 (327)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe
Confidence            655555544321   12343332     588888876521    1    11111 1   123345677777666666665


Q ss_pred             cCCCeEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCcEEEEEecCCcEE
Q 007234          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (612)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~  277 (612)
                       .-|.+.+||+.++...     +.-.-....+-..+..     .+..-+++...+|.|.
T Consensus       275 -K~G~i~lyDleTgt~i-----~~nRIs~~~iF~~a~~-----~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         275 -KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVL  322 (327)
T ss_dssp             -TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTSEEE
T ss_pred             -cCcEEEEEEcccccEE-----EEeecCCCceEEeccC-----CCCceEEEECCCCeEE
Confidence             6899999999999744     4333222222222222     3444556666777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.44  E-value=0.15  Score=48.81  Aligned_cols=105  Identities=8%  Similarity=-0.003  Sum_probs=61.8

Q ss_pred             CcEEEEEECC-CcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC------CcEEEEECCCCceeEEEecC
Q 007234           86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGKFRAS  158 (612)
Q Consensus        86 ~~~l~~gs~~-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~  158 (612)
                      +.+++.|..+ ..+.+||+.++.-...-.......-.+.+..+||+.++.++.+      ..+.+||..+.+-... ...
T Consensus        87 g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~  165 (387)
T d1k3ia3          87 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNA  165 (387)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTS
T ss_pred             CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeec-CCC
Confidence            6677777665 4599999998876422111111223456677899988888743      3689999887643211 100


Q ss_pred             ---------------CCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCee
Q 007234          159 ---------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (612)
Q Consensus       159 ---------------~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~  191 (612)
                                     ...-..+...++|+.+..+.  +.+.++|..+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         166 KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             cccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                           00111233345677777666  5677777776654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.09  E-value=0.15  Score=52.08  Aligned_cols=146  Identities=11%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCC----------------------------------CeEEEEEecCCCEE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG----------------------------------GVSAISFATHGSCI  132 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~----------------------------------~V~~l~~sp~~~~l  132 (612)
                      ..++.++.+|.+.++|..+|+.+.........                                  .-...+++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            56788899999999999999987654211100                                  01134677777777


Q ss_pred             EEEecCCcEEEEECCCCceeEEEecCCC---CeeEEEECCCCCEEEEeC-CeEEEEEcCCCeeEEEEecCCCCEEEEEEe
Q 007234          133 YSAGADGMVCEIDPLTGSLLGKFRASTK---GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (612)
Q Consensus       133 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s  208 (612)
                      +....+....++.....+..........   ......+ +.+.-..... |.+.-||+.+++.+-+.+... +...=..+
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~ls  485 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLT  485 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEE
Confidence            7776666655555443321111110000   0000000 0111000011 689999999999988776432 22222234


Q ss_pred             eCCcEEEEEEcCCCeEEEEEcCCCccc
Q 007234          209 DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (612)
Q Consensus       209 p~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (612)
                      -.|..+++++ .|+.++.+|..+++..
T Consensus       486 tagglVF~G~-~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         486 TAGNVVFQGT-ADGRLVAYHAATGEKL  511 (573)
T ss_dssp             ETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             EcCCEEEEEC-CCCeEEEEECCCCcEe
Confidence            4676777765 7999999999999865

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.63  Score=41.82  Aligned_cols=144  Identities=6%  Similarity=-0.086  Sum_probs=90.5

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEe--cCCcEEEEECCCCceeEEEecCCCCeeE
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (612)
                      .+..+-...+.|.+.++........+ ........+++++|...+++-..  ..+.|...++............-..+..
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  168 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeE
Confidence            33444445566999998876654333 33456789999999665655443  3456777787544443333333456789


Q ss_pred             EEECCCCCEEEEeC---CeEEEEEcCCCeeEEEEecC--CCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCc
Q 007234          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (612)
Q Consensus       165 l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~  233 (612)
                      +++.+.++.|..+.   +.|...|+..........+.  .....++++.  +.+|+.+...++.|...+..++.
T Consensus       169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence            99999888777665   78999998765433333322  2345567665  34555555467788777776664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.64  E-value=0.9  Score=42.51  Aligned_cols=188  Identities=13%  Similarity=0.150  Sum_probs=102.3

Q ss_pred             CcEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEec----CC--CEEEEEec--C--CcEEEEECCC-CceeEE
Q 007234           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT----HG--SCIYSAGA--D--GMVCEIDPLT-GSLLGK  154 (612)
Q Consensus        86 ~~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp----~~--~~l~s~s~--d--g~v~iwd~~~-~~~~~~  154 (612)
                      ..+|+.....+-|++||+. |+.+..+.   .+.++.+..-.    ++  ..++.++.  +  .+|.+|.+.. ...+..
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            4566666666679999985 77765553   35566555432    22  23555552  2  3577787642 233333


Q ss_pred             EecC-------CCCeeEEEE--CCC-CCEE-EEeC--CeEEEEEc---CCC----eeEEEEecCCCCEEEEEEeeCCcEE
Q 007234          155 FRAS-------TKGISCMAV--SSD-GKML-ATAA--GQLKTFNC---SDH----KKMQKFSGHPGAVRFMTFSDNGKYV  214 (612)
Q Consensus       155 ~~~~-------~~~v~~l~~--spd-g~~l-~~~~--g~i~lwd~---~~~----~~~~~~~~h~~~v~~l~~sp~~~~l  214 (612)
                      +...       ...++.+|+  +|. |.+. ++..  |.+..|.+   ..+    +.+++|. -...+..|.+.+....|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence            3221       124667777  664 5543 3444  78877765   233    4456665 34678899999988888


Q ss_pred             EEEEcCCCeEEEEEcCCCccccceeeEeec-----CCceeEEeEEecCCccCCCCcEEEEEe-cCCcEEEEECCCc
Q 007234          215 LSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNI  284 (612)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~t~s-~dg~i~iwd~~~~  284 (612)
                      +.+= ++.-|..+++..........+....     ....-+.....+     ....+|++++ .+++..+||..+.
T Consensus       195 yisE-E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~-----~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         195 YIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA-----DGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEE-TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG-----GGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEec-CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC-----CCCeEEEEEcCCCCeEEEEecCCC
Confidence            8874 6665555555432211111222211     122223333332     2223555554 4789999997653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.10  E-value=1.6  Score=42.10  Aligned_cols=238  Identities=11%  Similarity=0.049  Sum_probs=119.8

Q ss_pred             EEEEcCCCCEEEEEe-CC----CcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeeccccccccc
Q 007234           10 LTSFSPALDYFAICS-GD----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (612)
Q Consensus        10 ~~~fspdg~~las~s-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (612)
                      ..++||||+++|.+- .+    ..|+++|+.+|+.+...-.                   ......+.|...        
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-------------------~~~~~~~~W~~D--------  181 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------------RVKFSCMAWTHD--------  181 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------------------EECSCCEEECTT--------
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-------------------cccccceEEcCC--------
Confidence            347899999998542 23    3699999999987642110                   011134455544        


Q ss_pred             CCcEEEEEECC----------------CcEEEEEcCCCeEE--EEecc-CCCCCeEEEEEecCCCEEEEEec---CCcEE
Q 007234           85 GSSLLVLGTGG----------------GDVLALAVSAGQLK--WRLSD-CHPGGVSAISFATHGSCIYSAGA---DGMVC  142 (612)
Q Consensus        85 ~~~~l~~gs~~----------------g~I~vwd~~~~~~~--~~~~~-~h~~~V~~l~~sp~~~~l~s~s~---dg~v~  142 (612)
                       +..++....+                ..|..|.+.++...  ..+.. .....+..+..++++++++....   ++...
T Consensus       182 -~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~  260 (430)
T d1qfma1         182 -GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (430)
T ss_dssp             -SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             -CCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEE
Confidence             3333332211                23777777765321  11211 12234677888999998764332   33334


Q ss_pred             E--EECCCCc--------eeEEEecCCCCeeEEEECCCCCEEEEeC-----CeEEEEEcCCCee--EEE-EecCCCCEEE
Q 007234          143 E--IDPLTGS--------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQK-FSGHPGAVRF  204 (612)
Q Consensus       143 i--wd~~~~~--------~~~~~~~~~~~v~~l~~spdg~~l~~~~-----g~i~lwd~~~~~~--~~~-~~~h~~~v~~  204 (612)
                      +  .|+....        ....+........-+. +.++.+++...     +.|...++.....  ... +..+...+..
T Consensus       261 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~  339 (430)
T d1qfma1         261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE  339 (430)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE
T ss_pred             EEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee
Confidence            4  4543221        1122222222333322 22333444333     5677777765432  223 3445555655


Q ss_pred             EEEeeCCcEEEEEEcCCC--eEEEEEcCCCccccceeeEeecCCceeEEeEEecCCccCCCCc-EEEEE-ec--CCcEEE
Q 007234          205 MTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAI-SE--TGVCYI  278 (612)
Q Consensus       205 l~~sp~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~t~-s~--dg~i~i  278 (612)
                      -.++..+.+|+..-..++  .|+++++.++...   .+.  ..+...+......     ++.. ..++. |.  -.++.-
T Consensus       340 ~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~---~~~--~~~~~sv~~~~~~-----~~~~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         340 WVACVRSNFLVLCYLHDVKNTLQLHDLATGALL---KIF--PLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEETTTCCEE---EEE--CCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEEEE
T ss_pred             eEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE---Eec--CCCCceEeeccCC-----CCCCEEEEEEcCCCCCCeEEE
Confidence            555555666665543454  5888998877543   121  1222222333222     3333 33332 22  357888


Q ss_pred             EECCCcce
Q 007234          279 WYGQNIEE  286 (612)
Q Consensus       279 wd~~~~~~  286 (612)
                      ||+.+++.
T Consensus       410 ~Dl~t~~~  417 (430)
T d1qfma1         410 CDLTKEEL  417 (430)
T ss_dssp             EETTSSSC
T ss_pred             EECCCCCc
Confidence            89888753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.00  E-value=1.3  Score=44.81  Aligned_cols=79  Identities=20%  Similarity=0.435  Sum_probs=52.7

Q ss_pred             CcEEEEECCCCceeEEEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcCCCeeEEEEecCCCC-EEEEEEeeCCc-EE
Q 007234          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGK-YV  214 (612)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~-~l  214 (612)
                      |.+..+|+.+|+.+-.+..+.. +.+-.++-.|.++++|+  |.++.+|.+||+.+-+++-.... -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            5788899999988877764332 22212334567777787  89999999999999888632221 11256778886 55


Q ss_pred             EEEE
Q 007234          215 LSSA  218 (612)
Q Consensus       215 ~s~s  218 (612)
                      +..+
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.90  E-value=0.28  Score=46.67  Aligned_cols=106  Identities=16%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             CcEEEEEECCC-----------cEEEEEcCCCeEEE--EeccCCCCCeEEEEEecCCCEEEEEecC-CcEEEEECCCCce
Q 007234           86 SSLLVLGTGGG-----------DVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGAD-GMVCEIDPLTGSL  151 (612)
Q Consensus        86 ~~~l~~gs~~g-----------~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g~v~iwd~~~~~~  151 (612)
                      +++++.|+.+.           .+.+||+.++.-..  .....|.....+..+.++|+.++.|+.+ ..+.+||..+..-
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            67788877431           26799999876421  2223344445567888999988888755 5899999887654


Q ss_pred             eEEEec-CCCCeeEEEECCCCCEEEEeC--------CeEEEEEcCCCee
Q 007234          152 LGKFRA-STKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK  191 (612)
Q Consensus       152 ~~~~~~-~~~~v~~l~~spdg~~l~~~~--------g~i~lwd~~~~~~  191 (612)
                      ...-.. ....-.+.+..+||++++.|+        ..+.+||..+.+-
T Consensus       111 ~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         111 IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            322111 112335677788999999886        3699999988754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.66  E-value=1.7  Score=40.43  Aligned_cols=192  Identities=15%  Similarity=0.219  Sum_probs=109.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEeeccCCccccccccccccccccccceeEEEeeecccccccccCCcEEEEEEC-
Q 007234           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-   94 (612)
Q Consensus        16 dg~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~gs~-   94 (612)
                      +..+++.....+=|.+||+. |+.++.+..  +.+..+             +.  ..-++...+      ...+++++. 
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNV-------------Dv--r~~~~l~~~------~~di~vasnR   94 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNV-------------DI--RYDFPLNGK------KVDIAAASNR   94 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEE-------------EE--EEEEEETTE------EEEEEEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCcc-------------cc--ccccccCCc------ceEEEEEeCC
Confidence            45677666666569999985 887776531  111100             00  000011111      223455553 


Q ss_pred             -CC--cEEEEEcCC-CeEEEEeccC------CCCCeEEEEE--ecC-CC-EEEEEecCCcEEEEECC---CC----ceeE
Q 007234           95 -GG--DVLALAVSA-GQLKWRLSDC------HPGGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL---TG----SLLG  153 (612)
Q Consensus        95 -~g--~I~vwd~~~-~~~~~~~~~~------h~~~V~~l~~--sp~-~~-~l~s~s~dg~v~iwd~~---~~----~~~~  153 (612)
                       ++  .|.+|.+.. +..+..+...      -...+.++|+  ++. |. +++....+|.+..|.+.   .+    +.++
T Consensus        95 ~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr  174 (353)
T d1h6la_          95 SEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR  174 (353)
T ss_dssp             CTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE
T ss_pred             cCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee
Confidence             23  477787753 2233233211      1124777777  554 44 46667788999888663   23    3455


Q ss_pred             EEecCCCCeeEEEECCCCCEEEEeC--CeEEEEEcC-----CCeeEEEEec--CCCCEEEEEEee--CCc-EEEEEEcCC
Q 007234          154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFSG--HPGAVRFMTFSD--NGK-YVLSSAVGE  221 (612)
Q Consensus       154 ~~~~~~~~v~~l~~spdg~~l~~~~--g~i~lwd~~-----~~~~~~~~~~--h~~~v~~l~~sp--~~~-~l~s~s~~d  221 (612)
                      .|.. ...+..|.+.++...|+.+-  .-|+.++..     .+..+....+  ....+-.++.-.  ++. ||++++.++
T Consensus       175 ~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         175 AFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            6653 45789999999988998887  345555543     1233333322  356788887654  333 777777778


Q ss_pred             CeEEEEEcCCC
Q 007234          222 RYIALWRTDGV  232 (612)
Q Consensus       222 ~~i~vwd~~~~  232 (612)
                      .+..+||....
T Consensus       254 n~f~vydr~~~  264 (353)
T d1h6la_         254 SSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEESSTT
T ss_pred             CeEEEEecCCC
Confidence            89999998764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.34  E-value=2  Score=39.85  Aligned_cols=128  Identities=9%  Similarity=0.029  Sum_probs=73.1

Q ss_pred             EEEEEE---CCCcEEEEEcCCCe--EE--EEeccCCCCCeEEEEEecCCCEEEEEe--c-------------CCcEEEEE
Q 007234           88 LLVLGT---GGGDVLALAVSAGQ--LK--WRLSDCHPGGVSAISFATHGSCIYSAG--A-------------DGMVCEID  145 (612)
Q Consensus        88 ~l~~gs---~~g~I~vwd~~~~~--~~--~~~~~~h~~~V~~l~~sp~~~~l~s~s--~-------------dg~v~iwd  145 (612)
                      +|++..   ....|.+|++....  ..  ..+........+++.+..++.+++|-.  .             -++..+|.
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            444443   23448888875432  22  223223335578999999998777731  1             12334444


Q ss_pred             CCCCceeEEEecCCCCeeEEEECCCCCEEEEeC---CeEEEEEcCCCeeEEE--EecCCCCEEEEEEee-CCcEEEE
Q 007234          146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSD-NGKYVLS  216 (612)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~---g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp-~~~~l~s  216 (612)
                      ...++. ......-...+.|+++||+++|+++.   +.|+.|++.....+..  ...-.+..-.+.+.+ +|.+.+.
T Consensus       193 ~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         193 YSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             ECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            433433 22222334678999999999998886   7999999875432221  112334456677765 4444433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.23  E-value=2.2  Score=39.69  Aligned_cols=138  Identities=12%  Similarity=0.065  Sum_probs=83.5

Q ss_pred             CCcEEEEEcCCCeEEEEecc--CC-----CCCeEEEEE--ecCCCE-EEEEe---cCCcEEEEECCCCc--e--eEEEec
Q 007234           95 GGDVLALAVSAGQLKWRLSD--CH-----PGGVSAISF--ATHGSC-IYSAG---ADGMVCEIDPLTGS--L--LGKFRA  157 (612)
Q Consensus        95 ~g~I~vwd~~~~~~~~~~~~--~h-----~~~V~~l~~--sp~~~~-l~s~s---~dg~v~iwd~~~~~--~--~~~~~~  157 (612)
                      .|.|.++|+.+.........  +.     .-...++.+  .++|.. |++..   ...+|.+|++....  .  +.++..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            48899999876543211111  11     112355554  345553 55553   45678888775432  1  222332


Q ss_pred             C-CCCeeEEEECCCCCEEEEeC-----------------CeEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc
Q 007234          158 S-TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (612)
Q Consensus       158 ~-~~~v~~l~~spdg~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~  219 (612)
                      . ....+.+++..+|.++++-.                 +...+|..+.++...... .-...+.|+++||+++|+.+..
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeC
Confidence            2 23678999999999888832                 134455554444322223 2345789999999998888877


Q ss_pred             CCCeEEEEEcCCCc
Q 007234          220 GERYIALWRTDGVK  233 (612)
Q Consensus       220 ~d~~i~vwd~~~~~  233 (612)
                      ..+.|++|++....
T Consensus       226 ~~~~i~~y~~~~~~  239 (340)
T d1v04a_         226 LAHKIHVYEKHANW  239 (340)
T ss_dssp             GGTEEEEEEECTTS
T ss_pred             CCCeEEEEEeCCCc
Confidence            78899999997654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=1.9  Score=38.46  Aligned_cols=92  Identities=12%  Similarity=-0.019  Sum_probs=42.5

Q ss_pred             CcEEEEEcCCCeEEEEe--ccCCCCCeEEEEEecCCCEEEEEecCC-----cEEEEECCCCceeEEEecCCC-CeeEEEE
Q 007234           96 GDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFRASTK-GISCMAV  167 (612)
Q Consensus        96 g~I~vwd~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~-~v~~l~~  167 (612)
                      ..+.+||+.+......-  ...... -.++.  .+++.++.++.++     .+..+|..+..-...-..... .-.++..
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~~-~~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  146 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRNR-IGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  146 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBT-CEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             chhhhcccccccccccccccceecc-eeccc--cceeeEEecceecccccceeeeeccccCccccccccccccccceeee
Confidence            35889999887654211  111111 11222  2555555554433     344566655533221111111 1112222


Q ss_pred             CCCCCEEEEeC-------CeEEEEEcCCCee
Q 007234          168 SSDGKMLATAA-------GQLKTFNCSDHKK  191 (612)
Q Consensus       168 spdg~~l~~~~-------g~i~lwd~~~~~~  191 (612)
                      . ++.+++.|+       ..+..||..+.+.
T Consensus       147 ~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~  176 (288)
T d1zgka1         147 L-NRLLYAVGGFDGTNRLNSAECYYPERNEW  176 (288)
T ss_dssp             E-TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             e-eecceEecCcccccccceEEEeecccccc
Confidence            2 345555554       3688899887654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.82  E-value=7.1  Score=37.16  Aligned_cols=191  Identities=8%  Similarity=0.040  Sum_probs=101.0

Q ss_pred             CcEEEE-EECCCc----EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecC----------------CcEEEE
Q 007234           86 SSLLVL-GTGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----------------GMVCEI  144 (612)
Q Consensus        86 ~~~l~~-gs~~g~----I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~d----------------g~v~iw  144 (612)
                      +++++. -+.+|.    ++++|+.+|+.+......  .....+.|.+|++.|+-...|                ..|..|
T Consensus       136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h  213 (430)
T d1qfma1         136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (430)
T ss_dssp             SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence            555554 445564    999999999976433221  122568899999987655432                257888


Q ss_pred             ECCCCce--eEEEecCC--CCeeEEEECCCCCEEEEeC-----C--eEEEEEcCCCe--------eEEEEecCCCCEEEE
Q 007234          145 DPLTGSL--LGKFRAST--KGISCMAVSSDGKMLATAA-----G--QLKTFNCSDHK--------KMQKFSGHPGAVRFM  205 (612)
Q Consensus       145 d~~~~~~--~~~~~~~~--~~v~~l~~spdg~~l~~~~-----g--~i~lwd~~~~~--------~~~~~~~h~~~v~~l  205 (612)
                      .+.+...  ...+....  ..+..+..++++++++...     +  .+.+.|.....        ....+........- 
T Consensus       214 ~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (430)
T d1qfma1         214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-  292 (430)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-
T ss_pred             ECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEE-
Confidence            8776533  23344332  3466788899999987432     2  35555654321        12223333333332 


Q ss_pred             EEeeCCcEEEEEEc--CCCeEEEEEcCCCccccceeeEeecCCc--eeEEeEEecCCccCCCCcEEEEEecCC--cEEEE
Q 007234          206 TFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIW  279 (612)
Q Consensus       206 ~~sp~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~t~s~dg--~i~iw  279 (612)
                      ..+.++.+++.+..  .++.|...++..........  .+.++.  .......+      .++.+++....++  .|+++
T Consensus       293 ~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~--vi~~~~~~~~~~~~~~------~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACV------RSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEE--EECCCSSCEEEEEEEE------TTTEEEEEEEETTEEEEEEE
T ss_pred             EecCCceeecccCcccccceeEEecCCCCccccceE--EecccCcceeeeEEEE------ECCEEEEEEEcCCEeEEEEE
Confidence            23334444443321  13566666766554322122  222222  22233333      2334444445665  68889


Q ss_pred             ECCCccee
Q 007234          280 YGQNIEEL  287 (612)
Q Consensus       280 d~~~~~~~  287 (612)
                      +..++...
T Consensus       365 ~~~~~~~~  372 (430)
T d1qfma1         365 DLATGALL  372 (430)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEE
Confidence            98877654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.50  E-value=9.6  Score=35.52  Aligned_cols=127  Identities=6%  Similarity=-0.042  Sum_probs=72.8

Q ss_pred             cEEEEEECCCcEEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEec-----CCCC
Q 007234           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----STKG  161 (612)
Q Consensus        87 ~~l~~gs~~g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-----~~~~  161 (612)
                      +.+++. .++.+..++...-...... ..-..++..+.++|.  .++....++.+.++++..++......+     -...
T Consensus        97 d~l~v~-~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  172 (381)
T d1xipa_          97 DQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNS  172 (381)
T ss_dssp             TEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSS
T ss_pred             CEEEEE-eCCCEEEEEeecccccccc-ccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCC
Confidence            344444 4556777777653332222 123456888888775  566777899999999988864332211     2356


Q ss_pred             eeEEEECCCCCEEEEeCCe-EEEE-EcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEE
Q 007234          162 ISCMAVSSDGKMLATAAGQ-LKTF-NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (612)
Q Consensus       162 v~~l~~spdg~~l~~~~g~-i~lw-d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~  217 (612)
                      +.+++|++.|+.++++.|. ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       173 ~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         173 QLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            7888898888888877642 2221 111111110001233467888888666655543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.80  E-value=14  Score=35.32  Aligned_cols=32  Identities=16%  Similarity=0.178  Sum_probs=25.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 007234           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQT   41 (612)
Q Consensus        10 ~~~fspdg~~las~s~dg~i~iwd~~~~~~~~   41 (612)
                      +++|.|||++|++--.+|+|++++..++....
T Consensus        31 ~la~~pdg~llVter~~G~i~~v~~~~g~~~~   62 (450)
T d1crua_          31 ALLWGPDNQIWLTERATGKILRVNPESGSVKT   62 (450)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             EEEEeCCCeEEEEEecCCEEEEEECCCCcEee
Confidence            56999999988776557999999988876543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.57  E-value=10  Score=31.87  Aligned_cols=173  Identities=14%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             EEEEEcCCCeEEEEeccCCCCCeEEEEEecCCCEEEEEecCCcEEEEECCCCceeEEEecCC-CCeeEEEECCCCCEEEE
Q 007234           98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLAT  176 (612)
Q Consensus        98 I~vwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~  176 (612)
                      |.+-|+...-...++.....-.|.++++. +.+..++|+....+.+|-++.|+....-.... +.|+.+    .+++++-
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G  158 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAG  158 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEE
Confidence            55555553222224422222345666654 34567788877778888887776544332221 234433    3555553


Q ss_pred             eC----C--eEEEEEcCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEc---CCCeEEEEEcCCCccccceeeEeec---
Q 007234          177 AA----G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAME---  244 (612)
Q Consensus       177 ~~----g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~---  244 (612)
                      .+    +  ...+-|+.+|. ++.|....+.++....+++.+. ++.-.   +...| -+|++.++-..    ..+.   
T Consensus       159 ~g~~~g~~~sfF~adl~SG~-lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yer----ve~P~kd  231 (313)
T d2hu7a1         159 LGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVED----LELPSKD  231 (313)
T ss_dssp             EEEEETTEEEEEEEETTTEE-EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEE----CCCSSCH
T ss_pred             EeeecCCcceEEEEecccCC-EEEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceee----eecCccc
Confidence            33    2  44555665553 4566666777777777777664 33211   12234 44766554220    0111   


Q ss_pred             ---CCceeEEeEEecCCccCCCCcEEEEEecCCcEEEEECCCcceecc
Q 007234          245 ---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (612)
Q Consensus       245 ---~~~~~~~~~~~~~~~~~~~~~~l~t~s~dg~i~iwd~~~~~~~~~  289 (612)
                         -....+..+.+.     |++++++.+-.||.-.+|.  +|+.+..
T Consensus       232 ~~sy~p~~I~~~~Y~-----Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         232 FSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             HHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             ceeecceEEEeeeeC-----CCCcEEEEEecCCchheee--cceEecC
Confidence               112334444565     9999999999999999986  4555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.51  E-value=16  Score=33.97  Aligned_cols=109  Identities=6%  Similarity=0.028  Sum_probs=69.2

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEECCC-----------CceeEEEecCCCCeeEEEECCCCCEEEEeC-CeEEEEE
Q 007234          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLT-----------GSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN  185 (612)
Q Consensus       118 ~~V~~l~~sp~~~~l~s~s~dg~v~iwd~~~-----------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~-g~i~lwd  185 (612)
                      ....-++.++...+++.|+.++ +++..+..           .......  .-..|..++|+.|  .+++.. +.+..++
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVSTRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEEESSEEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEEeCCCEEEEE
Confidence            3456778888777788887775 55654321           1111111  1236889999754  455544 7888888


Q ss_pred             cCCCeeEEEEecCCCCEEEEEEeeCCcEEEEEEcCCCeEEEEEcCCCcc
Q 007234          186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (612)
Q Consensus       186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~~d~~i~vwd~~~~~~  234 (612)
                      ..+-........-..++.++.++|..  ++... .++.+.++++..++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~~--~~l~~-~~~~~~~~~l~~~~~  157 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILN-SVNDLSALDLRTKST  157 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEE-TTSEEEEEETTTCCE
T ss_pred             eeccccccccccccccccceecCCce--eEEEe-cCCCEEEEEeccCcc
Confidence            87654444444456678888888764  34444 488999999988753