Citrus Sinensis ID: 007242

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-
MGLFRAEGVVYKPVQETDTASPPPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
ccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHccc
ccccccccEEEcccHccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHEccccccccccccccccccHccccccEEEEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccHHHHHHHcccccccHHHHHHHHHHcccEEEEcccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHHHcccccHHHHHcccccccEEEEEcHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEccccHcccEEEEEEccHHHHHHHHHHHHHHHHccccHHHEEEEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccHHHcccccccccEEEcccEEEEEEHccccccEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHccHHccccHHHHHHHccc
mglfraegvvykpvqetdtasppppqpnqfyltanvkaprmAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISyaeledsplyvplhpydsedlkEQEIKhidsdlsppekvqqaidclplssekqpffhrwtvldyskayssgditpRMVAERFIAAVressnppmkmsfFINYNEEDILKQATEStlrykkgepisvLDGVLIAVkdeidcspypttggtkwlhkvrpctgdacCVMRLRLCGAILVgktnmhelgagtsginphygvarnpydpskitggsssgSAAVVAAGLCPvalgvdgggsvrmpaalcgvvgfkptfgriplsgvlplnwtVGMVGILAATVEDALVVYAAingplpsqqptvslpkvsfpllksatsISAIKLAKYdawfndcsddIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKincsdqgwDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGnflglpavtvpvgydtaglpiglqfigkpwseptLMHIAFAMQALCIsefrkpkvfhdllyke
mglfraegvvykpvqetdtasppppqPNQFYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSkayssgditpRMVAERFIAAVressnppmkMSFFINYNEEDILKQATEStlrykkgepiSVLDGVLIAVKDEIDCSPypttggtkwlhkvRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTayeikddalktGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
MGLFRAEGVVYKPVQETDTASPPPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESPIlgglllYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITggsssgsaavvaagLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
*****************************FYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPY**************************IDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVR*******KMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVA*****************AAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP****TVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLY**
************PVQETDTASPPP*****FYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPY***************************************FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYK*
MGLFRAEGVVYKPV********PPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKI*********AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
****RAEGVVYKPVQETDTASPPPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSS********AGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGLFRAEGVVYKPVQETDTASPPPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLPLSSEKQPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query611 2.2.26 [Sep-21-2011]
Q7XJJ7607 Fatty acid amide hydrolas yes no 0.939 0.945 0.432 1e-139
B2V855485 Glutamyl-tRNA(Gln) amidot yes no 0.747 0.942 0.304 4e-57
A0Q2Q0485 Glutamyl-tRNA(Gln) amidot yes no 0.685 0.863 0.313 4e-50
Q1IUE4480 Glutamyl-tRNA(Gln) amidot yes no 0.693 0.883 0.309 4e-50
B8I601486 Glutamyl-tRNA(Gln) amidot yes no 0.692 0.870 0.312 4e-49
Q9JTZ5481 Glutamyl-tRNA(Gln) amidot yes no 0.721 0.916 0.301 1e-48
Q4R7R9528 Glutamyl-tRNA(Gln) amidot N/A no 0.716 0.829 0.326 7e-48
Q3A2K0485 Glutamyl-tRNA(Gln) amidot yes no 0.700 0.882 0.310 3e-47
Q9H0R6528 Glutamyl-tRNA(Gln) amidot yes no 0.716 0.829 0.322 8e-47
B3QQF5481 Glutamyl-tRNA(Gln) amidot yes no 0.715 0.908 0.308 1e-46
>sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1 Back     alignment and function desciption
 Score =  497 bits (1279), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/589 (43%), Positives = 366/589 (62%), Gaps = 15/589 (2%)

Query: 31  YLTANVKAPRMAGFLVKVFVWLLESPILGGLLLYILKRNNLIHKFISYAELEDSPLYVPL 90
           Y    +KAP + G   K+FV LLE+P++G L++  LK++N + K      + + P++ P 
Sbjct: 20  YKAETMKAPHLTGLSFKLFVNLLEAPLIGSLIVDYLKKDNGMTKIFRNTVIPEEPMFRPE 79

Query: 91  HPYDSEDLKEQEIKHIDSDLSPPEKVQQAIDCLP-------LSSEKQPFFHRWTVLDYSK 143
            P       E ++  +  D SP ++++ A+ CLP       L ++    F  W + DY+ 
Sbjct: 80  FPSQE---PEHDVVIVGEDESPIDRLETALKCLPQYDPSRSLHADPVSSFRYWKIRDYAY 136

Query: 144 AYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISV 203
           AY S   TP  VA+R I+ + E         F I ++  +++KQA  ST R+++G PISV
Sbjct: 137 AYRSKLTTPLQVAKRIISIIEEFGYDKPPTPFLIRFDANEVIKQAEASTRRFEQGNPISV 196

Query: 204 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGA 263
           LDG+ + +KD+IDC P+PT GGT WLH+ R    D+  V +LR CGAIL+GK NMHELG 
Sbjct: 197 LDGIFVTIKDDIDCLPHPTNGGTTWLHEDRSVEKDSAVVSKLRSCGAILLGKANMHELGM 256

Query: 264 GTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVV 323
           GT+G N +YG  RNP+DP + TGGSSSGSAA+VAAGLC  ALG DGGGSVR+P+ALCG+ 
Sbjct: 257 GTTGNNSNYGTTRNPHDPKRYTGGSSSGSAAIVAAGLCSAALGTDGGGSVRIPSALCGIT 316

Query: 324 GFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFP 383
           G K T+GR  ++G L    TV ++G LA+++EDA +VYAAI G   + +  +      FP
Sbjct: 317 GLKTTYGRTDMTGSLCEGGTVEIIGPLASSLEDAFLVYAAILGSSSADRYNLKPSPPCFP 376

Query: 384 LLKS---ATSISAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEV 439
            L S   + +I +++L KY  WFND  S DI   C   +  L   +G KVVE+ +P +E 
Sbjct: 377 KLLSHNGSNAIGSLRLGKYTKWFNDVSSSDISDKCEDILKLLSNNHGCKVVEIVVPELEE 436

Query: 440 MRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQ 499
           MR AH ++IGS   +SL+ Y +    S   +D R + +++ SFS+ +YI AQ +R   M+
Sbjct: 437 MRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRTSFAIFRSFSASDYIAAQCLRRRLME 496

Query: 500 IHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVP 559
            H N+F   DVIV PTTG+TA  I  DALK GE +      L+R+ +A N LG PA++VP
Sbjct: 497 YHLNIFKDVDVIVTPTTGMTAPVIPPDALKNGETNIQVTTDLMRFVLAANLLGFPAISVP 556

Query: 560 VGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLL 608
           VGYD  GLPIGLQ +G+PW+E T++ +A A++ L     +KP +F+D+L
Sbjct: 557 VGYDKEGLPIGLQIMGRPWAEATVLGLAAAVEELA-PVTKKPAIFYDIL 604
Degrades bioactive fatty acid amides to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Converts N-actylethanolamine (NAE) to ethanolamine. Can also use oleamide or 2-arachidonylglycerol as substrates, but not indole-3-acetamide, 1-naphtalene-acetamide, nicotinic acid amide or L-asparagine. Might be involved in abscisic acid signaling and plant defense through distinctly different mechanisms not involving the catalytic activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9
>sp|B2V855|GATA_SULSY Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A0Q2Q0|GATA_CLONN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium novyi (strain NT) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q1IUE4|GATA_KORVE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Koribacter versatilis (strain Ellin345) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B8I601|GATA_CLOCE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q9JTZ5|GATA_NEIMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q4R7R9|GATA_MACFA Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Macaca fascicularis GN=QRSL1 PE=2 SV=1 Back     alignment and function description
>sp|Q3A2K0|GATA_PELCD Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q9H0R6|GATA_HUMAN Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial OS=Homo sapiens GN=QRSL1 PE=1 SV=2 Back     alignment and function description
>sp|B3QQF5|GATA_CHLP8 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobaculum parvum (strain NCIB 8327) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query611
224081068611 predicted protein [Populus trichocarpa] 0.990 0.990 0.735 0.0
225438343610 PREDICTED: fatty acid amide hydrolase [V 0.988 0.990 0.738 0.0
356527536609 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.986 0.990 0.717 0.0
356511201608 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.986 0.991 0.709 0.0
224093658578 predicted protein [Populus trichocarpa] 0.936 0.989 0.741 0.0
357520143609 Glutamyl-tRNA(Gln) amidotransferase subu 0.983 0.986 0.709 0.0
449457323608 PREDICTED: fatty acid amide hydrolase-li 0.986 0.991 0.696 0.0
356507431620 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.988 0.974 0.686 0.0
356518808621 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.988 0.972 0.686 0.0
357464817629 Glutamyl-tRNA(Gln) amidotransferase subu 0.981 0.953 0.627 0.0
>gi|224081068|ref|XP_002306283.1| predicted protein [Populus trichocarpa] gi|222855732|gb|EEE93279.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/617 (73%), Positives = 529/617 (85%), Gaps = 12/617 (1%)

Query: 1   MGLFRAEGVVYKPVQETDTASPPPPQPNQFYLTANVKAPRMAGFLVKVFVWLLESPILGG 60
           MGLFRA+GVVYKPV+  +      P  ++FYL ANVKAPRMAGF VK+F W LES I G 
Sbjct: 1   MGLFRAKGVVYKPVENVNLG----PDSDEFYLQANVKAPRMAGFPVKIFAWFLESRIFGT 56

Query: 61  LLLYILKRNNLIHKFISYAELEDSPLYVPLHPYDSEDLKEQEIKHIDSDLSPPEKVQQAI 120
            LLYILKRNNLIHK ++ AEL++SP+YVP+HP+  E+L EQE+KHIDS LSP E+VQQAI
Sbjct: 57  FLLYILKRNNLIHKLVTNAELKESPVYVPMHPF--EELNEQEVKHIDSGLSPSEQVQQAI 114

Query: 121 DCLPLSSEK-----QPFFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSF 175
           +CLPL SEK     +P F RWT++DYSKAYSSG+ITP MVAE+ + A+RESS+PPM M+F
Sbjct: 115 NCLPLPSEKIVNGLKPSFRRWTIMDYSKAYSSGEITPCMVAEQLVTAIRESSSPPMDMAF 174

Query: 176 FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 235
           FINY+ EDIL+QA EST RY++GEPIS LDGV IA+KDEIDCSPYPTTGGTKWLHK R C
Sbjct: 175 FINYDAEDILRQAKESTRRYERGEPISALDGVPIAIKDEIDCSPYPTTGGTKWLHKFRSC 234

Query: 236 TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 295
            GDACCVMRLR CGA+++GKTNMHELGAGTSGINPHYG  RNPY+P  I+GGSSSGSAAV
Sbjct: 235 KGDACCVMRLRSCGAVIIGKTNMHELGAGTSGINPHYGATRNPYNPGMISGGSSSGSAAV 294

Query: 296 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 355
           VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGR+P SGVLPLNWTVGMVG+LA T+E
Sbjct: 295 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRVPHSGVLPLNWTVGMVGVLAGTIE 354

Query: 356 DALVVYAAINGPLPSQQPT-VSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCC 414
           DA +VYAAINGPLPS + + + LPKV FPLL+S  S+S + LA+Y  WF+DC DDIR CC
Sbjct: 355 DAFIVYAAINGPLPSHETSAIPLPKVYFPLLQSTNSVSNVILARYGEWFSDCGDDIRTCC 414

Query: 415 SRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARV 474
           S+A+ +L E++GWK V+VTIP+IE MRLAHYLTIGSEC+ +LSSYL+K++ ++ GWD RV
Sbjct: 415 SQALHQLSEKFGWKTVDVTIPDIESMRLAHYLTIGSECTAALSSYLEKLDNAESGWDLRV 474

Query: 475 ALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELD 534
           AL VYGSFS +EYIKAQK+R+ QMQ HRN+F KADVIV PT GVTAY I DDALKTGELD
Sbjct: 475 ALCVYGSFSGEEYIKAQKLRSRQMQFHRNIFTKADVIVTPTVGVTAYPIFDDALKTGELD 534

Query: 535 YIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALC 594
           YI GAALVRYQIAGNFLGLPAVTVPVGYD  GLPIGLQFIG+PWSEPTL+HIA+AMQ LC
Sbjct: 535 YINGAALVRYQIAGNFLGLPAVTVPVGYDKNGLPIGLQFIGRPWSEPTLIHIAYAMQTLC 594

Query: 595 ISEFRKPKVFHDLLYKE 611
           +S++RKP+VF+DLL K+
Sbjct: 595 VSKYRKPQVFYDLLEKD 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438343|ref|XP_002272907.1| PREDICTED: fatty acid amide hydrolase [Vitis vinifera] gi|296082617|emb|CBI21622.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527536|ref|XP_003532365.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|356511201|ref|XP_003524317.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|224093658|ref|XP_002309950.1| predicted protein [Populus trichocarpa] gi|222852853|gb|EEE90400.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357520143|ref|XP_003630360.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355524382|gb|AET04836.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] Back     alignment and taxonomy information
>gi|449457323|ref|XP_004146398.1| PREDICTED: fatty acid amide hydrolase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507431|ref|XP_003522470.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|356518808|ref|XP_003528069.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|357464817|ref|XP_003602690.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355491738|gb|AES72941.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XJJ7FAAH_ARATH3, ., 5, ., 1, ., 9, 90.43290.93940.9456yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 1e-111
pfam01425431 pfam01425, Amidase, Amidase 2e-94
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 5e-92
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 3e-82
PRK09201465 PRK09201, PRK09201, amidase; Provisional 1e-72
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 6e-70
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 1e-69
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 2e-61
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 1e-60
PRK05962424 PRK05962, PRK05962, amidase; Validated 4e-57
PRK07056454 PRK07056, PRK07056, amidase; Provisional 2e-51
PRK08137497 PRK08137, PRK08137, amidase; Provisional 7e-50
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 1e-45
PRK08310395 PRK08310, PRK08310, amidase; Provisional 3e-45
PRK07235502 PRK07235, PRK07235, amidase; Provisional 5e-45
PRK07487469 PRK07487, PRK07487, amidase; Provisional 2e-44
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 4e-44
PRK12470462 PRK12470, PRK12470, amidase; Provisional 8e-42
PRK07042464 PRK07042, PRK07042, amidase; Provisional 2e-41
PRK06061483 PRK06061, PRK06061, amidase; Provisional 3e-40
PRK06707536 PRK06707, PRK06707, amidase; Provisional 9e-40
PRK07486484 PRK07486, PRK07486, amidase; Provisional 4e-33
PRK06170490 PRK06170, PRK06170, amidase; Provisional 2e-32
PRK07139439 PRK07139, PRK07139, amidase; Provisional 3e-30
PRK07869468 PRK07869, PRK07869, amidase; Provisional 6e-29
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 7e-29
PRK06828491 PRK06828, PRK06828, amidase; Provisional 1e-27
PRK11910615 PRK11910, PRK11910, amidase; Provisional 2e-25
PRK06529482 PRK06529, PRK06529, amidase; Provisional 8e-23
PRK06565566 PRK06565, PRK06565, amidase; Validated 6e-17
PRK06061483 PRK06061, PRK06061, amidase; Provisional 7e-09
PRK07486484 PRK07486, PRK07486, amidase; Provisional 1e-08
PRK06828491 PRK06828, PRK06828, amidase; Provisional 2e-07
PRK12470462 PRK12470, PRK12470, amidase; Provisional 3e-07
PRK06170490 PRK06170, PRK06170, amidase; Provisional 1e-04
PRK07869468 PRK07869, PRK07869, amidase; Provisional 1e-04
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 5e-04
PRK06565566 PRK06565, PRK06565, amidase; Validated 0.002
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  341 bits (877), Expect = e-111
 Identities = 159/470 (33%), Positives = 234/470 (49%), Gaps = 20/470 (4%)

Query: 135 RWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILK--QATEST 192
             T  + +    + +++   + E ++A + E+ NP +    F+  + E  L   +A  + 
Sbjct: 6   ELTAAELAALLRAKELSAVELVEAYLARI-EALNPDLN--AFVAVDPEAALALAEAAAAD 62

Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
            R   GEP+  L GV IAVKD ID +  PTT G+K L    P   DA  V RLR  GA++
Sbjct: 63  ARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVP-PYDATVVERLRAAGAVI 121

Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
           +GKTNM E   G+S  N  +G  RNP++  ++ GGSS GSAA VAAGL P+ALG D GGS
Sbjct: 122 LGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGS 181

Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
           +R+PAA CG+VG KPT+GR+   GV+PL  ++  +G LA TV DA ++   I GP P   
Sbjct: 182 IRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS 241

Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDC--SDDIRVCCSRAVDKLCERYGWKVV 430
           P    P V   L      +  +++              D+R     AV  L E  G +VV
Sbjct: 242 PLPPPPPVPPALAG--KDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKAL-EAAGAEVV 298

Query: 431 EVTIPN-IEVMRLAHY---LTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQE 486
           EV++P   +   LA Y      G       +    K      G + +  + +     S  
Sbjct: 299 EVSLPLLSDDYALAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAG 358

Query: 487 YIKAQKIRNHQMQIHR---NVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVR 543
           Y  A   R  +  I R    +F + DV++ PTT   A +I +      +   +Y   L  
Sbjct: 359 YYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMY--LLDV 416

Query: 544 YQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 593
           + +  N  GLPA++VP G+   GLP+GLQ IG  + + TL+ +A A++  
Sbjct: 417 FTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA 466

Length = 475
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 611
PRK06169466 putative amidase; Provisional 100.0
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK07042464 amidase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK07487469 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK07486484 amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK07056454 amidase; Provisional 100.0
PRK12470462 amidase; Provisional 100.0
PRK08137497 amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
PRK06529482 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PRK06828491 amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK06707536 amidase; Provisional 100.0
PRK11910615 amidase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK06565566 amidase; Validated 100.0
PRK08310395 amidase; Provisional 100.0
PRK07139439 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>PRK06169 putative amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-98  Score=820.33  Aligned_cols=460  Identities=28%  Similarity=0.446  Sum_probs=392.9

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEEe
Q 007242          133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVK  212 (611)
Q Consensus       133 ~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~vK  212 (611)
                      +.+.|+.+++++|++|++|++||++++|+||++.+   +.+|+|++++.|+++++|+++|+++++|+++||||||||+||
T Consensus         4 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~---~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vK   80 (466)
T PRK06169          4 LADLTAVELLAAYRRGELSPVEATQAVLDRIDRRD---PAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIK   80 (466)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEe
Confidence            34568999999999999999999999999999886   578999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChhh
Q 007242          213 DEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGS  292 (611)
Q Consensus       213 D~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgGs  292 (611)
                      |+||++|++||+||..+.+..++.+||++|++||+||||++||||||||+++.+|+|++||+|+||||++|++|||||||
T Consensus        81 D~~~v~G~~tt~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs  160 (466)
T PRK06169         81 DIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGA  160 (466)
T ss_pred             cccccCCcccCccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence            99999999999999987655565789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCCC
Q 007242          293 AAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ  372 (611)
Q Consensus       293 aaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~~  372 (611)
                      |++||+|++++|+|||+|||||+||+||||||||||+||+|+.|+.+.+ ++|++|||||||+|+++++++|.|+|+.|.
T Consensus       161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~  239 (466)
T PRK06169        161 AAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDW  239 (466)
T ss_pred             HHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999998876 899999999999999999999999887664


Q ss_pred             CCcCCCCCCcccccc-cCCCCceEEEEeCCCc-CCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHH
Q 007242          373 PTVSLPKVSFPLLKS-ATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS  450 (611)
Q Consensus       373 ~~~~~p~~~~p~~~~-~~~~~~lrIGv~~~~~-~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~  450 (611)
                      .+...+.  .++... ....+++|||+..+++ ...+|+|+++++++++.|++ +|++|++++++ +......+...+..
T Consensus       240 ~~~~~~~--~~~~~~~~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~~-~~~~~~~~~~~~~~  315 (466)
T PRK06169        240 SALPPPT--TSFLDALDRDVRGLRIAYSPTLGYVDVDPEVAALVAQAVQRLAA-LGARVEEVDPG-FSDPVEAFHVLWFA  315 (466)
T ss_pred             cccCCCC--cchhhhhccCCCCCEEEEECCcCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEeCCC-cchHHHHHHHHHHH
Confidence            3322111  112111 2346789999987654 56799999999999999997 89999999866 33333333344445


Q ss_pred             HHHhhhhHHHhhccCCCCchhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhHhcCCCEEEeeCCCCCcccccchhhcc
Q 007242          451 ECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKT  530 (611)
Q Consensus       451 E~~~~l~~~~~~~~~~~l~~~~r~~l~~~~~~sa~dy~~a~~~r~~~~~~~~~lf~~~DvIltPttp~~ap~i~~~~~~~  530 (611)
                      +....+..+... ....+.+.++..+..+..++..+|.++++.|+++++.+.++|+++|+||+||+|+++|+++.... .
T Consensus       316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~-~  393 (466)
T PRK06169        316 GAARLLRALPPG-QRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPAFEAGHDVP-P  393 (466)
T ss_pred             HHHHHHHHhhhc-chhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccCC-C
Confidence            555544443222 23457788888888888999999999999999999999999999999999999999998864211 1


Q ss_pred             CcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHHHHHHHhcccCCCCCCc
Q 007242          531 GELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKV  603 (611)
Q Consensus       531 g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A~~lE~~~~~~~~~P~~  603 (611)
                      + ........++.||.+||++|+|++|||+|++.+|+|+||||+|++++|+.||++|+++|+.+.+.+++|+.
T Consensus       394 ~-~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~~~~~~~p~~  465 (466)
T PRK06169        394 G-SGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQALPWPHGAPAA  465 (466)
T ss_pred             c-cchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhcCcccCCCCC
Confidence            1 11111223356899999999999999999998999999999999999999999999999998777667653

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 2e-43
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 2e-39
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 9e-37
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 1e-35
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 1e-34
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 3e-28
2dc0_A434 Crystal Structure Of Amidase Length = 434 3e-27
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 2e-23
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 5e-23
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 9e-18
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 1e-17
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-17
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 9e-17
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 1e-16
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 1e-16
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 1e-16
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 1e-16
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 2e-16
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 4e-16
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 7e-16
1mt5_A537 Crystal Structure Of Fatty Acid Amide Hydrolase Len 3e-07
2wap_A543 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 4e-07
4hbp_A550 Crystal Structure Of Faah In Complex With Inhibitor 4e-07
4do3_A571 Structure Of Faah With A Non-steroidal Anti-inflamm 5e-07
2wj1_A573 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 5e-07
2vya_A587 Crystal Structure Of Fatty Acid Amide Hydrolase Con 5e-07
3qk5_A587 Crystal Structure Of Fatty Acid Amide Hydrolase Wit 6e-07
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 222/470 (47%), Gaps = 44/470 (9%)
Query: 150 ITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLI 209
           I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ +
Sbjct: 20  IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPM 76
Query: 210 AVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGIN 269
            +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S   
Sbjct: 77  GIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHKENAVLIGKLNMDEFAMGGSTET 135
Query: 270 PHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTF 329
            ++    NP+D   +               L P++LG D GGS+R PAA CGVVG KPT+
Sbjct: 136 SYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTY 195
Query: 330 GRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSAT 389
           GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F   +   
Sbjct: 196 GRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFT-SEIGK 254
Query: 390 SISAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTI 448
            I  +K+A    +  +  +DD++     AV+ L +  G  V EV++PN +    ++Y+  
Sbjct: 255 DIKGLKVALPKEYLGEGVADDVKEAVQNAVETL-KSLGAVVEEVSLPNTKFGIPSYYVIA 313
Query: 449 GSECSTSLSSY-----------------LQKINCSDQGWDARVALSVY-GSFSSQE---- 486
            SE S++LS +                 L K++ S +G+   V   ++ G+F+       
Sbjct: 314 SSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRS-EGFGKEVKRRIFLGTFALSSGYYD 372
Query: 487 --YIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIK---DDALKTGELDYIYGAAL 541
             Y K+QK+R         VF   DV+V PT   TA+ +    DD L       +Y   L
Sbjct: 373 AYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT------MYANDL 426
Query: 542 VRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 591
           +   +  N  GLP ++VP G  + G PIGLQFIGKP+ E TL  +A+  +
Sbjct: 427 LTTPV--NLAGLPGISVPCG-QSNGRPIGLQFIGKPFDEKTLYRVAYQYE 473
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Length = 537 Back     alignment and structure
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543 Back     alignment and structure
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor Length = 550 Back     alignment and structure
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory Drug Length = 571 Back     alignment and structure
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573 Back     alignment and structure
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587 Back     alignment and structure
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small Molecule Inhibitor Length = 587 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 3e-99
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 2e-97
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 5e-92
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 3e-89
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-84
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 4e-80
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 1e-79
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 2e-79
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 2e-77
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 2e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
 Score =  308 bits (791), Expect = 3e-99
 Identities = 120/473 (25%), Positives = 197/473 (41%), Gaps = 58/473 (12%)

Query: 137 TVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYK 196
            +L+  +   +G  TP  + E  +    ++       +     +EE   K+A   T   +
Sbjct: 2   DLLEAKRLLETGRTTPLALLEEALERA-KAFQD---RNALAYLDEEAARKEALALTEELR 57

Query: 197 KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKT 256
           +G+    L G+ + VKD       PT  GTK      P   +A  V RLR  GA+L  KT
Sbjct: 58  RGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLP--EEARAVRRLREAGALLFAKT 115

Query: 257 NMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMP 316
           NMHE+  G +G NP  G  RN  DPS+  GGSS GSA  VA G+   +LG D GGS+R+P
Sbjct: 116 NMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIP 175

Query: 317 AALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP--- 373
           A   GVVGFKP++GR+ L G LPL+ +    G L  +V DA  +   + G     +    
Sbjct: 176 AGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQN 235

Query: 374 -TVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEV 432
               +P                     D        ++R   +R ++ L      +V EV
Sbjct: 236 PVFGVPL--------------------DFLEGRLGVEVRKAFTRLLEDL-PALRAEVREV 274

Query: 433 TIPNIEVMRLAHYLTIGSECSTSLSSY------LQKINCSDQGWDA----RVALSVYGSF 482
           ++P   V           E  T L  Y       + +    +G+       +   +    
Sbjct: 275 SLPLEGV----------YEVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLA--L 322

Query: 483 SSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEI--KDDALKTGELDYIYGAA 540
           + ++Y  A   R              D +++P   + A  +  ++  L++G   +    A
Sbjct: 323 TEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHRE--A 380

Query: 541 LVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQAL 593
            +   +  + LG+P + +P      G+P+GLQ +G    +  ++ +   ++A 
Sbjct: 381 FITLTLPFSLLGVPTLALPFA-KVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query611
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
Probab=100.00  E-value=3.5e-101  Score=847.69  Aligned_cols=458  Identities=30%  Similarity=0.442  Sum_probs=391.9

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhh-hcCCCCCCccCcEEEE
Q 007242          133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRY-KKGEPISVLDGVLIAV  211 (611)
Q Consensus       133 ~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~-~~g~~lgpL~GVPi~v  211 (611)
                      +.++|+.+++++|++|++||+||+++||+||++.+   +.+|||+++++|+|+++|+++|+++ ++|++ ||||||||+|
T Consensus         3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~v   78 (485)
T 3ip4_A            3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGI   78 (485)
T ss_dssp             GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEE
T ss_pred             cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEE
Confidence            45689999999999999999999999999999886   6899999999999999999999999 89999 9999999999


Q ss_pred             ecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 007242          212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG  291 (611)
Q Consensus       212 KD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgG  291 (611)
                      ||+|+++|++||+||..+.++ .+.+||++|++||+||||++||||||||+++.+|.|++||+|+||||++++|||||||
T Consensus        79 KD~~~v~G~~tt~Gs~~~~~~-~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgG  157 (485)
T 3ip4_A           79 KDNIITNGLETTCASKMLEGF-VPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGG  157 (485)
T ss_dssp             ETTBCBTTBCCCTTSGGGTTC-CCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred             EcCcccCCCccCCCChhhcCC-CCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccH
Confidence            999999999999999988665 4578999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCC
Q 007242          292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ  371 (611)
Q Consensus       292 saaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~  371 (611)
                      ||++||+|++|+|+|||+|||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+|+|+.|
T Consensus       158 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d  237 (485)
T 3ip4_A          158 SAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND  237 (485)
T ss_dssp             HHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTC
T ss_pred             HHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCcCCCCCCcccccccCCCCceEEEEeCCCcC-CCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHH
Q 007242          372 QPTVSLPKVSFPLLKSATSISAIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS  450 (611)
Q Consensus       372 ~~~~~~p~~~~p~~~~~~~~~~lrIGv~~~~~~-~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~  450 (611)
                      ..+...|...+... ....++++|||++.+++. .++|+|+++++++++.|++ +||+|+++++|.+++....+...+..
T Consensus       238 ~~~~~~~~~~~~~~-~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~-~G~~v~~~~~p~~~~~~~~~~~~~~~  315 (485)
T 3ip4_A          238 STSAPVDDVDFTSE-IGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKS-LGAVVEEVSLPNTKFGIPSYYVIASS  315 (485)
T ss_dssp             TTSCCCCCCCCSTT-TTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHHH
T ss_pred             ccccccCccchhhh-hccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            54332222111110 123478999999988764 5799999999999999997 89999999999887777777777888


Q ss_pred             HHHhhhhHHHh------------------hccCCCCchhHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhHhcC
Q 007242          451 ECSTSLSSYLQ------------------KINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAK  507 (611)
Q Consensus       451 E~~~~l~~~~~------------------~~~~~~l~~~~r~~l~~~~-----~~sa~dy~~a~~~r~~~~~~~~~lf~~  507 (611)
                      |+..++..+..                  ......+++.++..+..+.     .....+|.++++.|+++++.+.++|++
T Consensus       316 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~  395 (485)
T 3ip4_A          316 EASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN  395 (485)
T ss_dssp             HHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88776543211                  0011224445544443332     222345889999999999999999999


Q ss_pred             CCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHH
Q 007242          508 ADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA  587 (611)
Q Consensus       508 ~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A  587 (611)
                      +|+||+||+|.++|+++...   +  +.........||.+||++|+|++|||+|++ +|||+||||||++|+|+.||++|
T Consensus       396 ~D~ll~Pt~~~~a~~~~~~~---~--~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A  469 (485)
T 3ip4_A          396 YDVVVGPTAPTTAFNLGEEI---D--DPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVA  469 (485)
T ss_dssp             CSEEEEESSSSSCCBTTTST---T--CHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHH
T ss_pred             CCEEEeCCCCCCCCCccccc---C--ChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHH
Confidence            99999999999999986521   0  111111123489999999999999999998 89999999999999999999999


Q ss_pred             HHHHHhcccCCCCCCc
Q 007242          588 FAMQALCISEFRKPKV  603 (611)
Q Consensus       588 ~~lE~~~~~~~~~P~~  603 (611)
                      +++|+.+.+.+++|++
T Consensus       470 ~~lE~~~~~~~~~p~~  485 (485)
T 3ip4_A          470 YQYETQYNLHDVYEKL  485 (485)
T ss_dssp             HHHHHHSCCTTTGGGC
T ss_pred             HHHHHhcCcccCCCCC
Confidence            9999998888777753
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 611
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 3e-90
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 2e-70
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 8e-55
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 3e-43
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 1e-41
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  285 bits (731), Expect = 3e-90
 Identities = 140/484 (28%), Positives = 221/484 (45%), Gaps = 36/484 (7%)

Query: 133 FHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATEST 192
               +V +         I P  V +    A+ E ++P   +  F+  ++E+ +K+A E  
Sbjct: 3   IRYESVENLLTLIKDKKIKPSDVVKDIYDAI-EETDP--TIKSFLALDKENAIKKAQELD 59

Query: 193 LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAIL 252
               K +    L G+ + +KD I  +   TT  +K L        ++  + +L    A+L
Sbjct: 60  ELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEG-FVPIYESTVMEKLHKENAVL 118

Query: 253 VGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS 312
           +GK NM E   G S    ++    NP+D   + GGSS GSAA VAAGL P++LG D GGS
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGS 178

Query: 313 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 372
           +R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +  
Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDS 238

Query: 373 PTVSLPKVSFPLLKSATSISAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVE 431
            +  +  V F        I  +K+A    +  +  +DD++     AV+ L +  G  V E
Sbjct: 239 TSAPVDDVDFTSEIGK-DIKGLKVALPKEYLGEGVADDVKEAVQNAVETL-KSLGAVVEE 296

Query: 432 VTIPNIEVMRLAHYLTIGSECSTSLSSY------------------LQKINCSDQGWDAR 473
           V++PN +    ++Y+   SE S++LS +                   +       G + +
Sbjct: 297 VSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVK 356

Query: 474 VALSVYGSFSSQEYIKA-----QKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDAL 528
             + +     S  Y  A     QK+R         VF   DV+V PT   TA+ + ++  
Sbjct: 357 RRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEI- 415

Query: 529 KTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAF 588
                D +   A        N  GLP ++VP G    G PIGLQFIGKP+ E TL  +A+
Sbjct: 416 ----DDPLTMYANDLLTTPVNLAGLPGISVPCGQSN-GRPIGLQFIGKPFDEKTLYRVAY 470

Query: 589 AMQA 592
             + 
Sbjct: 471 QYET 474
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query611
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.8e-96  Score=811.38  Aligned_cols=460  Identities=30%  Similarity=0.436  Sum_probs=393.6

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCCceEEEEecCHHHHHHHHHHHhhhhhcCCCCCCccCcEEEE
Q 007242          132 FFHRWTVLDYSKAYSSGDITPRMVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAV  211 (611)
Q Consensus       132 ~~~~~si~~~~~~~~sg~lT~~ev~~a~l~~i~~~~~~~~~~~a~~~~~~~~al~~A~~~d~r~~~g~~lgpL~GVPi~v  211 (611)
                      .+++.||.||+++|++|++||+||+++||+||++.+   +.+|||+++++|+|+++|+++|+++++|+..||||||||+|
T Consensus         2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~---~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~v   78 (485)
T d2f2aa1           2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGI   78 (485)
T ss_dssp             CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEE
Confidence            357889999999999999999999999999999986   68999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCccCCccccccccCCCCCCcHHHHHHHHHCCCeEEEecCcCccccCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 007242          212 KDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSG  291 (611)
Q Consensus       212 KD~~~v~g~~tt~Gs~~~~~~~~~~~da~~V~~Lr~aGAIi~GKtn~~E~~~~~~~~n~~~G~t~NP~n~~~~~GGSSgG  291 (611)
                      ||+|+++|++||+|+..+.+. .+.+|+.+|++||++|||++||||||||+++.++.|++||+|+||||++++|||||||
T Consensus        79 KD~~~v~g~~tt~Gs~~~~~~-~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgG  157 (485)
T d2f2aa1          79 KDNIITNGLETTCASKMLEGF-VPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGG  157 (485)
T ss_dssp             ETTBCBTTBCCCTTCGGGTTC-CCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred             EcccccCCCccCCcChhhccC-CccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCcccc
Confidence            999999999999999988665 4578999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCccceeeccCCCcccccccccCcccccCCCCCcCCCCCCCCCCccccccccccCHHHHHHHHHHHcCCCCCC
Q 007242          292 SAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQ  371 (611)
Q Consensus       292 saaaVAag~~p~alGtD~gGSiRiPAa~~Gv~GlKPT~Grvs~~g~~~~~~~~~~~Gplarsv~Dla~~~~~i~g~d~~~  371 (611)
                      ||++||+|++|+|+|||+|||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+++.|
T Consensus       158 saaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d  237 (485)
T d2f2aa1         158 SAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND  237 (485)
T ss_dssp             HHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTB
T ss_pred             chhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCcCCCCCCcccccccCCCCceEEEEeCCCc-CCCCHHHHHHHHHHHHHHHHHcCcEEEEeecCchHHHHHHHHHHHHH
Q 007242          372 QPTVSLPKVSFPLLKSATSISAIKLAKYDAWF-NDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS  450 (611)
Q Consensus       372 ~~~~~~p~~~~p~~~~~~~~~~lrIGv~~~~~-~~~~p~V~~a~~~a~~~L~~~~G~eVvei~~p~l~~~~~a~~~~~~~  450 (611)
                      ..+...|...+... ....++++|||++.+++ ...+++++++++++++.|++ +|++|+++++|........+......
T Consensus       238 ~~~~~~~~~~~~~~-~~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~-~G~~v~ev~lp~~~~~~~~~~~~~~~  315 (485)
T d2f2aa1         238 STSAPVDDVDFTSE-IGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKS-LGAVVEEVSLPNTKFGIPSYYVIASS  315 (485)
T ss_dssp             TTSCCCCCCCCSTT-TTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHH-TTCEEEEECCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCccchhhh-hcCCccCCEEEEEcccccCcCCHHHHHHHHHHHHHHHH-CCCEEEEeCCCchhhhHHHHHHHHHH
Confidence            54433332222111 12347899999998776 45699999999999999997 89999999999887666666677777


Q ss_pred             HHHhhhhHHHhh------------------ccCCCCchhHHHHHHh-----hcCCCHHHHHHHHHHHHHHHHHHHhHhcC
Q 007242          451 ECSTSLSSYLQK------------------INCSDQGWDARVALSV-----YGSFSSQEYIKAQKIRNHQMQIHRNVFAK  507 (611)
Q Consensus       451 E~~~~l~~~~~~------------------~~~~~l~~~~r~~l~~-----~~~~sa~dy~~a~~~r~~~~~~~~~lf~~  507 (611)
                      |+...+..+...                  .....+.+.++.++..     ...+...+|.++++.|..+.+.+.++|++
T Consensus       316 e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~  395 (485)
T d2f2aa1         316 EASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN  395 (485)
T ss_dssp             HHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            777665443110                  0011133444333222     24455566788888889899999999999


Q ss_pred             CCEEEeeCCCCCcccccchhhccCcchhhhcccccccchhhhhhCCCceecccccCCCCCceEEEEEeCCCChHHHHHHH
Q 007242          508 ADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIA  587 (611)
Q Consensus       508 ~DvIltPttp~~ap~i~~~~~~~g~~~~~~~~~~~~yt~~~Nl~G~PAisvPvG~~~~GlPvGvQivG~~~~E~~LL~~A  587 (611)
                      +|+||+||++.++|++++...     +.........||.+||++|+|++|||+|++ +|+|+||||||++|+|+.||++|
T Consensus       396 ~D~ll~Pt~~~~a~~~~~~~~-----~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-dGlPvGlQiig~~~~D~~LL~~A  469 (485)
T d2f2aa1         396 YDVVVGPTAPTTAFNLGEEID-----DPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVA  469 (485)
T ss_dssp             CSEEEEESSSSSCCBTTTSTT-----CHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHH
T ss_pred             CCEEEeCCCCCCCCCcccccC-----CHHHHhhhhHHHHHHHHHCCCeEEEECCCC-CCCCEeEEEECCCCCHHHHHHHH
Confidence            999999999999998865211     111112234589999999999999999985 79999999999999999999999


Q ss_pred             HHHHHhcccCCCCCCc
Q 007242          588 FAMQALCISEFRKPKV  603 (611)
Q Consensus       588 ~~lE~~~~~~~~~P~~  603 (611)
                      +++|+.++++.++|++
T Consensus       470 ~~~E~~~~~~~~~p~l  485 (485)
T d2f2aa1         470 YQYETQYNLHDVYEKL  485 (485)
T ss_dssp             HHHHHHSCCTTTGGGC
T ss_pred             HHHHhhCCCCcCCCCC
Confidence            9999999888888864
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure