Citrus Sinensis ID: 007244

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-
Protein Sequence
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEccHHcccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccEEEEcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccEEEEccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccEEEEEccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEcccEEEEccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccEEEEEEccccccHHHHHHHHHccccccEEEEcHHHccccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHccccEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHcccccccccccccccccccHccccccccEEccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHcccccccEEEEccHEEEcccccccEEEEEccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEcccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEcEcccccccccccEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHccccEEEEcccEEEEcccccccccHHHHHHHHHEEEcc
Coil and Loop (DISEMBL)
MDTDIDDTCKAKDEEKKWKQILVIMVgapgsgkstFCEHVMRSSARPWARICQDtinkgksgtkvQCLTSASSAlkkgksvfldrcnlereqrtdfvklggpevdvHAVVLDLPAKLCISRSVKRiehegnlqggKAAAVVNRMLQkkelpklsegfsriTLCQNENDVQAALDtysglgpldtlphgsfgqknpdAKIQLGIMKFLkkvdapsntgstasstqdpvppqiteeknsclegqEITSLLSdaageevkgtenpevasvnqngsssdvptlafpslstsdfqfnnekaSDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQkhinpkkfftfvgDITRLYTGGGLCCNVIANAanwrlkpggggvnaAIFSAAGPALEVATAErakslypgnsvivplpstsplcgregvTHVIHvlgpnmnprrpncldgdyvKGCEILRKAYTSLFEGFLSIVRSQEKlskgcnedirlepsvsqdhsedvhgnyistgdkikrdggheyeqskkcktqnevgtdinlsraanlsadnekigvstSKAWGSWAQALYRTamyperhkddlleisdDVVVLNDLYPKMYEMNICKFYKRCMLWV
Flexible Loop (DISEMBL)
mdtdiddtckakdeekkwkQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTinkgksgtkvQCLTSassalkkgksvfldrcnLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRiehegnlqggkaaAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTgstasstqdpvppQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAkaaqkhinpkkfftfvGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHvlgpnmnprrpnCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRlepsvsqdhsedvhgnYISTGDKIKRDGGHEyeqskkcktqnevgtdinlsraanlsadnekigvstskawgsWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Low Complexity Region (SEG)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Disordered region (IsUnstruct)
****************KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN***********************************RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ******LSEGFSRITLCQNENDVQAALDTYSGLGPLDTL************KIQLGIMKFL***************************************************************************************KASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS***************************************************************************IGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLW*
Disordered Region (DISOPRED)
*********************LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK**********GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGL*********************************************************************************************************STSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKIL******A**KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS**************************************************************************************WAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Disordered Region (DISEMBL)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV*******************QITEEKNSCLEGQEITSLLSDA**********PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEP********DVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Disordered Region (DISPRO)
*****************WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD************************************************************SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS*********************************************************************************KAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRCMLWV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	611	2.2.26 [Sep-21-2011]
Q9M041	912	Transcription factor bHLH	yes	no	0.865	0.580	0.568	0.0
O13911	408	Bifunctional polynucleoti	yes	no	0.216	0.323	0.295	1e-07
Q5UQD2	421	Putative bifunctional pol	N/A	no	0.217	0.315	0.294	1e-07
Q19683	407	Uncharacterized protein F	yes	no	0.216	0.324	0.290	4e-06
Q96T60	521	Bifunctional polynucleoti	yes	no	0.214	0.251	0.292	0.0001
Q9JLV6	522	Bifunctional polynucleoti	yes	no	0.214	0.250	0.264	0.0001
C9Y0V8	176	O-acetyl-ADP-ribose deace	yes	no	0.117	0.409	0.404	0.0004

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/582 (56%), Positives = 414/582 (71%), Gaps = 53/582 (9%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E  K KQI+V+++G PGSGKSTFC+  MRSS RPW+RICQD +N GK+GTK QCL  A+ 
Sbjct: 221 EADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATD 280

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
           +L++GKSVF+DRCNL+REQR++F+KLGGPE +VHAVVL+LPA++CISRSVKR  HEGNLQ
Sbjct: 281 SLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQ 340

Query: 134 GGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQK 193
           GG+AAAVVN+MLQ KELPK++EGFSRI  C ++ DV  A++ Y+ LGP+DTLP G FG+K
Sbjct: 341 GGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEK 400

Query: 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
             D K Q GIMKF KKV A P+++ + A+              N+  +  E+T+      
Sbjct: 401 KLDTKSQPGIMKFFKKVSALPASSSNEAT--------------NTTRKADEMTA------ 440

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
                   N  V+ V + GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG
Sbjct: 441 --------NVRVSPV-KLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLG 491

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
            ARLVLVDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NW
Sbjct: 492 TARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW 551

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHV
Sbjct: 552 RLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHV 611

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K      R   +  
Sbjct: 612 LGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPK------RSSQTAV 665

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVS 552
            D  ED           IK D     E++KK K   +     NL   +    D    G  
Sbjct: 666 SDSGED-----------IKEDS----ERNKKYKGSQDKAVTNNLESES--LEDTRGSGKK 708

Query: 553 TSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
            SK W +WA AL+  AM+PERH++ +LE  D++VV+ND YPK
Sbjct: 709 MSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPK 750

Arabidopsis thaliana (taxid: 3702)

>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnk1 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 20  QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK 79
           Q +V++VG P SGKST  E  + +    + R+ QD +      TK +C+ +A  ALKK K
Sbjct: 256 QEIVVLVGFPSSGKSTLAESQIVTQG--YERVNQDILK-----TKSKCIKAAIEALKKEK 308

Query: 80  SVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAA 138
           SV +D  N   E R  ++ +    E+ +  + L    +L    +V R  H    Q  + A
Sbjct: 309 SVVIDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEELARHNNVFRYIHHNQKQLPEIA 368

Query: 139 AVVNRMLQKKELPKLSEGFSRI 160
              N    + ++P + EGF+ +
Sbjct: 369 --FNSFKSRFQMPTVEEGFTNV 388

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Has a role in the repair of breaks in single stranded DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q5UQD2|PNKP_MIMIV Putative bifunctional polynucleotide phosphatase/kinase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L469 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78
           K+ +++M+G PGSGKS F ++ +  +   +  I QD     K  TK +CL+   +AL KG
Sbjct: 257 KKEMIVMIGQPGSGKSFFVKNYILPNG--YVHINQD-----KCKTKAKCLSETENALSKG 309

Query: 79  KSVFLDRCNLEREQRTDFVKLGGPEV--DVHAVVLDLPAKLCIS-RSVKRIEHEGNLQGG 135
           KSV +D  N +   R  +  L        V A++++ P +L     +V+ I   G +   
Sbjct: 310 KSVVIDNTNPDVISRMTYTNLAKENNYDHVRAIIMETPDELAKHLNNVRHIYSSGTVP-- 367

Query: 136 KAAAVVNRMLQKK-ELPKLSEGFSRI 160
           K   +   + +K   LP+  E F +I
Sbjct: 368 KVTDIAYNIYRKNFVLPQYEENFDKI 393

Acanthamoeba polyphaga (taxid: 5757)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q19683|YZR5_CAEEL Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans GN=F21D5.5 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +++MVG PGSGKSTF +  M      +  + +DTI     GT  +C+ +  S L  GKSV
Sbjct: 252 IILMVGFPGSGKSTFAK--MLGHQHDYKIVNRDTI-----GTWQKCVAATRSYLADGKSV 304

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  + + E R  ++ +   E+ V     ++   +  ++   R     +    + +++V
Sbjct: 305 VIDNTSPDLESRKRYIDV-AKELGVPIRCFEMNCSMEHAQHNIRFRVLTDDNAAEISSMV 363

Query: 142 NRMLQKKEL-PKLSEGFSRIT 161
            R+ + K + P LSEGFS+I 
Sbjct: 364 LRIHKGKYVEPTLSEGFSQIV 384

Caenorhabditis elegans (taxid: 6239)

>sp|Q96T60|PNKP_HUMAN Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens GN=PNKP PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C+T+  +ALK+GK V
Sbjct: 367 VVVAVGFPGAGKSTFLKKHLVSAG--YVHVNRDTL-----GSWQRCVTTCETALKQGKRV 419

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +V+       V        A L  +R   R     +      + +V
Sbjct: 420 AIDNTNPDAASRARYVQCAR-AAGVPCRCFLFTATLEQARHNNRFREMTDSSHIPVSDMV 478

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGFS I
Sbjct: 479 MYGYRKQFEAPTLAEGFSAI 498

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Plays an important function in DNA repair following ionizing radiation or oxidative damage.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q9JLV6|PNKP_MOUSE Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus GN=Pnkp PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 366 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 418

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 419 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 477

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 478 MFSYRKQFEPPTLAEGFLEI 497

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Plays an important function in DNA repair following ionizing radiation or oxidative damage.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) GN=ymdB PE=3 SV=1

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 17/89 (19%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYP 406
           GDITR+ T      +VI NAAN  L  GGGGV+ AI  AAGP+L  A     ++     P
Sbjct: 10  GDITRIDT------DVIVNAANPSLM-GGGGVDGAIHRAAGPSLLAACKVVRQQQGECQP 62

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP 435
           G++VI          G      VIH +GP
Sbjct: 63  GHAVITE-------AGDLAAKAVIHTVGP 84

Deacetylates O-acetyl-ADP ribose. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.

Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) (taxid: 693216)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	611
359481176	734	PREDICTED: transcription factor bHLH140-	0.913	0.760	0.667	0.0
147867251	864	hypothetical protein VITISV_005888 [Viti	0.957	0.677	0.647	0.0
224140455	718	predicted protein [Populus trichocarpa]	0.900	0.766	0.659	0.0
255579308	749	aprataxin, putative [Ricinus communis] g	0.888	0.724	0.672	0.0
357438365	639	Transcription factor bHLH140, partial [M	0.949	0.907	0.608	0.0
356496191	734	PREDICTED: transcription factor bHLH140-	0.911	0.758	0.616	0.0
296081123	678	unnamed protein product [Vitis vinifera]	0.831	0.749	0.609	0.0
449440255	712	PREDICTED: transcription factor bHLH140-	0.878	0.754	0.614	0.0
449483719	712	PREDICTED: transcription factor bHLH140-	0.878	0.754	0.614	0.0
15240948	912	aprataxin [Arabidopsis thaliana] gi|7533	0.865	0.580	0.568	0.0

>gi|359481176|ref|XP_002270443.2| PREDICTED: transcription factor bHLH140-like [Vitis vinifera]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/586 (66%), Positives = 459/586 (78%), Gaps = 28/586 (4%)

Query: 11  AKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTS 70
           +K+ E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GTK QCL S
Sbjct: 7   SKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKS 66

Query: 71  ASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130
           A+SAL+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSVKR  HEG
Sbjct: 67  ATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEG 126

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSF 190
           NLQGGKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LDTLP G F
Sbjct: 127 NLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCF 186

Query: 191 GQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSD 250
           GQKNPDAKIQLGIMKFLKKV+ P N G   SS                          S 
Sbjct: 187 GQKNPDAKIQLGIMKFLKKVEVPVNVGEDISS--------------------------SS 220

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
              +E+KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EKVEEFVNK
Sbjct: 221 GNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNK 280

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           + NARLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL CN IANAA
Sbjct: 281 VENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAA 340

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++VPLPSTSPL  REGVTHVI
Sbjct: 341 NWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSREGVTHVI 400

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ +Q  L +G +E++R E S
Sbjct: 401 HVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSENLRSELS 460

Query: 491 VSQDHSEDVHGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEVGTDINLSRAANLSADNEK 548
           VSQDH +  H   +   D KIKR G +E E SKKCK  Q+E   D   S+      +NEK
Sbjct: 461 VSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEHEFDCTESKEGKDKLNNEK 520

Query: 549 IGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
           IG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLNDLYPK
Sbjct: 521 IGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPK 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867251|emb|CAN83280.1| hypothetical protein VITISV_005888 [Vitis vinifera]

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/610 (64%), Positives = 468/610 (76%), Gaps = 25/610 (4%)

Query: 15  EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA 74
           E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GTK QCL SA+SA
Sbjct: 101 EGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKSATSA 160

Query: 75  LKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG 134
           L+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSVKR  HEGNLQG
Sbjct: 161 LEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEGNLQG 220

Query: 135 GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKN 194
           GKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LDTLP G FGQKN
Sbjct: 221 GKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCFGQKN 280

Query: 195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE 254
           PDAKIQLGIMKFLKKV+ P N G  A+  + P+  QIT+  +SC +  E  S  S    +
Sbjct: 281 PDAKIQLGIMKFLKKVEVPVNVGPDANFPKHPLSTQITKXXDSCCKQPEDIS-SSSGNXK 339

Query: 255 EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNA 314
            +KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EKVEEFVNK+ NA
Sbjct: 340 XIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNKVENA 399

Query: 315 RLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW-- 372
           RLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL CN IANAAN   
Sbjct: 400 RLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAANCKF 459

Query: 373 --------------------RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIV 412
                               RLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++V
Sbjct: 460 PFVGLICMSRRSFEKASPCRRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVV 519

Query: 413 PLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVR 472
           PLPSTSPL  REGVTHVIHVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ 
Sbjct: 520 PLPSTSPLFSREGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMN 579

Query: 473 SQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEV 530
           +Q  L +G +E++R E SVSQDH +  H   +   D KIKR G +E E SKKCK  Q+E 
Sbjct: 580 TQGNLLEGSSENLRSELSVSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEH 639

Query: 531 GTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLND 590
             D   S+      +NEKIG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLND
Sbjct: 640 EFDCTESKEGKDXLNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLND 699

Query: 591 LYPKMYEMNI 600
            YPK  E + 
Sbjct: 700 XYPKKPEKDF 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140455|ref|XP_002323598.1| predicted protein [Populus trichocarpa] gi|222868228|gb|EEF05359.1| predicted protein [Populus trichocarpa]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/585 (65%), Positives = 453/585 (77%), Gaps = 35/585 (5%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E++K K ++VI+VGAPGSGKSTFCEHVM SS RPW RICQDTIN GK+GTK QCL  A++
Sbjct: 1   EQQKGKPVMVILVGAPGSGKSTFCEHVMGSSLRPWTRICQDTINNGKAGTKPQCLKRAAA 60

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132
           ALK+GKSVF+DRCNL++EQR+DFVKL  G +VDVHAVVLDLPA+LCISRSVKR  HEGNL
Sbjct: 61  ALKEGKSVFIDRCNLDKEQRSDFVKLDCGAQVDVHAVVLDLPAQLCISRSVKRTGHEGNL 120

Query: 133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQ 192
           QGGKAAAVVNRMLQKKELPKL+EGF+RI  C NENDV+A +  Y+ LGPLDTL +G FGQ
Sbjct: 121 QGGKAAAVVNRMLQKKELPKLNEGFARIVFCHNENDVEATIKAYTALGPLDTLSNGCFGQ 180

Query: 193 KNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
           KNPDAKIQLGIMKFLKKV+APS+ GS A+S                              
Sbjct: 181 KNPDAKIQLGIMKFLKKVEAPSSLGSCAAS------------------------------ 210

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
            ++VK +E+    SV+ + S  D+ TLAFPS+ST+DFQFNNEKASD+I+EKVEEFVNKL 
Sbjct: 211 -KDVKESEDLAKDSVDADVSVGDITTLAFPSISTADFQFNNEKASDIIVEKVEEFVNKLE 269

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
           NAR VLVDL+ GSKILSLVRAKAA+++I+ KKFFTFVGDITRLY+ GGL CN IANAANW
Sbjct: 270 NARFVLVDLSHGSKILSLVRAKAAKRNIDSKKFFTFVGDITRLYSQGGLRCNAIANAANW 329

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF+AAGP+LE AT ERAKSL PG++V+VPLPS SPL  RE V+HVIHV
Sbjct: 330 RLKPGGGGVNAAIFAAAGPSLETATKERAKSLLPGHAVVVPLPSDSPLYTREEVSHVIHV 389

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP+RPN L+ DY KGC ILR+AYTSLF GFLSIVRS+ KL +   E +   PS  
Sbjct: 390 LGPNMNPQRPNSLNNDYTKGCSILREAYTSLFTGFLSIVRSRSKLPRRIIEKLESSPSDL 449

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGTDINL--SRAANLSADNEKI 549
           +D S     +  ++  KIKRD    YE+SKKCK T +E   DI+   S    ++ D  K+
Sbjct: 450 KDPSHGPRNHLTNSDQKIKRDDDCVYERSKKCKGTHDETVADISAPSSTYGKVTGDKSKL 509

Query: 550 GVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
              TSK+WGSWAQALY  AM+PE+HKD LLE+ DDVVVLNDLYPK
Sbjct: 510 EGPTSKSWGSWAQALYHIAMHPEKHKDKLLEVLDDVVVLNDLYPK 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579308|ref|XP_002530499.1| aprataxin, putative [Ricinus communis] gi|223529956|gb|EEF31883.1| aprataxin, putative [Ricinus communis]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/581 (67%), Positives = 458/581 (78%), Gaps = 38/581 (6%)

Query: 20  QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK 79
           QI+V++VG PGSGKSTFC+HVM SS+RPW+RICQDTIN GK+GTK QCL SA +ALK+GK
Sbjct: 34  QIVVLLVGPPGSGKSTFCDHVMSSSSRPWSRICQDTINNGKAGTKPQCLKSAVNALKEGK 93

Query: 80  SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139
           SVF+DRCNL++EQR +FVKL   ++DVHAVVLDLPA+LCISRSVKR  HEGNLQGGKAAA
Sbjct: 94  SVFIDRCNLDKEQRAEFVKLADSQIDVHAVVLDLPAQLCISRSVKRTAHEGNLQGGKAAA 153

Query: 140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKI 199
           VVNRMLQKKELPKLSEGFSRI  C NE+DVQAA+D YS LGPLD LP+GSFGQK PDAK+
Sbjct: 154 VVNRMLQKKELPKLSEGFSRIMFCPNESDVQAAIDMYSALGPLDILPNGSFGQKKPDAKV 213

Query: 200 QLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGT 259
           Q GIMKFLKKVDAPSN GS  +                          LS    +EVK +
Sbjct: 214 QQGIMKFLKKVDAPSNVGSNIA--------------------------LSATTSKEVKES 247

Query: 260 ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLV 319
           E+    S+  +  S  +PTLAFPS+ST+DFQF+NEKASD+I+EKVEEFV KLGNARLVLV
Sbjct: 248 EDLIKGSICHDEDS--IPTLAFPSISTADFQFHNEKASDIIVEKVEEFVKKLGNARLVLV 305

Query: 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGG 379
           DL+QGSKILSLVRAKAAQ++I+  KFFTFVGDIT+L + GGL CNVIANAANWRLKPGGG
Sbjct: 306 DLSQGSKILSLVRAKAAQRNISTNKFFTFVGDITQLLSQGGLRCNVIANAANWRLKPGGG 365

Query: 380 GVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNP 439
           GVNAAI+SAAGPALEVAT E A SL PG++V+VPLPS SPL  REGV+H+IHVLGPNMNP
Sbjct: 366 GVNAAIYSAAGPALEVATKELATSLLPGHAVVVPLPSNSPLYHREGVSHIIHVLGPNMNP 425

Query: 440 RRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDV 499
           +RPNCL+GDY KGC+IL  AYTSLF GF+SI+++Q K  K   E++  + S+ QD S D+
Sbjct: 426 QRPNCLNGDYAKGCKILSDAYTSLFGGFVSILQNQAKSGKS-RENLVSDQSL-QDMSHDI 483

Query: 500 HGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEVGTDINLSRA----ANLSADNEKIGVST 553
             N ++ GD KIKRD  +  E+SKK K +QNE  T +N + +      +S DN KI  ST
Sbjct: 484 PRNILTNGDQKIKRDDDYMTEKSKKYKGSQNE--TRVNSTGSGCTYGKISRDNSKIDGST 541

Query: 554 SKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
           SK+W SWAQALY  AM PERHKD+LLEISDDVVVLNDLYPK
Sbjct: 542 SKSWNSWAQALYHIAMRPERHKDELLEISDDVVVLNDLYPK 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438365|ref|XP_003589458.1| Transcription factor bHLH140, partial [Medicago truncatula] gi|355478506|gb|AES59709.1| Transcription factor bHLH140, partial [Medicago truncatula]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/598 (60%), Positives = 452/598 (75%), Gaps = 18/598 (3%)

Query: 1   MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           MD D+D+        K  K ILVI+VGAPGSGKSTFCE VMRSS+R W R+CQDTI  GK
Sbjct: 1   MDMDLDNN-------KDAKPILVILVGAPGSGKSTFCEEVMRSSSRTWLRVCQDTIGNGK 53

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGG-PEVDVHAVVLDLPAKLCI 119
           +G+K QCL+SA+  LK GKSVF+DRCNL REQR+DF+KL G  ++D+HAVVLDLPAKLCI
Sbjct: 54  AGSKAQCLSSAARGLKDGKSVFIDRCNLNREQRSDFLKLRGESQIDIHAVVLDLPAKLCI 113

Query: 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGL 179
           SRSVKR  HEGNLQGGKAAAVVNRMLQ KELPKLSEGF+RIT CQ+E++V+ A+DTY  L
Sbjct: 114 SRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQSESNVKDAIDTYQKL 173

Query: 180 GPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCL 239
           GPL+ L HG FGQKNPD+KIQ  IMKFLKK + P +T S  ++  D       +  + C 
Sbjct: 174 GPLENLSHGCFGQKNPDSKIQSSIMKFLKKAEVPVDTASKENTIGDSTSQTSGKNDSLCK 233

Query: 240 EGQEITSLLSDA--AGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKAS 297
           + ++I S   ++    ++++G  N    S +   S  D PTLAFPS+ST+DFQFN++KA+
Sbjct: 234 DMEKIPSAHDNSKLGSKDIEGQTNIPAGSCHNQVSLDDTPTLAFPSISTADFQFNHDKAA 293

Query: 298 DVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYT 357
           D+I+EKV E+ NK+ NARLVLVDLT  SKILSLV++KAA+K+++ +KFFT VGDITRLY+
Sbjct: 294 DIIVEKVVEYSNKMENARLVLVDLTHRSKILSLVKSKAAEKNVDTQKFFTHVGDITRLYS 353

Query: 358 GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPST 417
            GGL CNVIANAANWRLKPGGGGVNA+IF AAGP LE AT E+AK++ PGN+V+VPLPS+
Sbjct: 354 TGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTVSPGNAVVVPLPSS 413

Query: 418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL 477
           SPL  REGVTHVIHVLGPNMNP+RPNCL+ DY +GC++L+ AY SLFEGF SIVR+    
Sbjct: 414 SPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYERGCKVLQDAYASLFEGFASIVRN---- 469

Query: 478 SKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGTDINL 536
           +   NE++  +    QD SE    N   T  K KRD  HE E+SKK K T +   T    
Sbjct: 470 TVHQNENLGKKSLELQDQSEQCSRN---TDQKSKRDADHELEKSKKYKGTHDGFDTTFTG 526

Query: 537 SRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
           SR   + +++++   ST KAWGSWAQAL+  AM+PE+HKDDLLEIS+D+VVLND+YPK
Sbjct: 527 SRDEKVDSEHKRTDGSTKKAWGSWAQALHLIAMHPEKHKDDLLEISEDIVVLNDMYPK 584

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496191|ref|XP_003516953.1| PREDICTED: transcription factor bHLH140-like [Glycine max]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/602 (61%), Positives = 443/602 (73%), Gaps = 45/602 (7%)

Query: 1   MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           MD D+++    K+     K +LVI+VGAPGSGKSTFCE VM SS RPW R+CQDTI  GK
Sbjct: 1   MDMDVEEASAPKER----KPVLVILVGAPGSGKSTFCEEVMGSSTRPWVRVCQDTIGNGK 56

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCI 119
           +G K QCL+SA+ ALK GKSVF+DRCNL+REQR++F+KLG GP++DVHAVVLDLPAKLCI
Sbjct: 57  AGNKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGDGPQIDVHAVVLDLPAKLCI 116

Query: 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGL 179
           SRSVKR  HEGNLQGGKAAAVVNRMLQ KELPKLSEGFSRIT CQNE+DV+ AL+TYS L
Sbjct: 117 SRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFSRITFCQNESDVKNALNTYSTL 176

Query: 180 GPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCL 239
           GPLD+L +G FGQKNPD+KIQ+GIMKFLK+ + P    S                     
Sbjct: 177 GPLDSLQYGCFGQKNPDSKIQVGIMKFLKRAEVPQTFSS--------------------- 215

Query: 240 EGQEITSLLSDAAGEEVKGTENPEVASVNQNG---SSSDVPTLAFPSLSTSDFQFNNEKA 296
                   + D    E K  EN  V SV  +    S  D+PTLAFPS+STSDFQFN+EKA
Sbjct: 216 --------IPDNDNSETKEVENQAVGSVGSHANQVSLDDIPTLAFPSISTSDFQFNHEKA 267

Query: 297 SDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLY 356
           +D+I+EKV EF NK  NARLVLVDL+  SKILSLV+AK A K+I+ +KFFT VGDIT LY
Sbjct: 268 ADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKIAGKNIDAQKFFTHVGDITHLY 327

Query: 357 TGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPS 416
           + GGL CNVIANAANWRL PGGGGVNAAIF+AAGP LE AT E+ +SL PGN+ +VPLPS
Sbjct: 328 SRGGLRCNVIANAANWRLNPGGGGVNAAIFNAAGPELESATKEKVQSLSPGNAAVVPLPS 387

Query: 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476
           +SPL  REGVTHVIHV+GPNMNP+RPNCL+ DY KGC+IL+ AYTSLFEGF SIVR+Q  
Sbjct: 388 SSPLFTREGVTHVIHVVGPNMNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQTW 447

Query: 477 LSKGCNEDIR---LEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGT 532
              G +E++    LE  V  D S +    +  T  K KRD  H   +SKK K T+++ G 
Sbjct: 448 HPVGKSENLERKSLELQVQSDCSRNY---FTKTDQKSKRDVDHGLGKSKKYKGTRDDSGL 504

Query: 533 DINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLY 592
               SR  N+ +++ +   S +K WGSWAQAL++ AM+PE+ KDDLLEISDDVVVLND+Y
Sbjct: 505 TFTDSRNENVDSEH-RTERSMTKTWGSWAQALHQIAMHPEKLKDDLLEISDDVVVLNDMY 563

Query: 593 PK 594
           PK
Sbjct: 564 PK 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081123|emb|CBI18255.3| unnamed protein product [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/591 (60%), Positives = 431/591 (72%), Gaps = 83/591 (14%)

Query: 4   DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63
           ++D    +K+ E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GT
Sbjct: 3   EMDCEPTSKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGT 62

Query: 64  KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123
           K QCL SA+SAL+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSV
Sbjct: 63  KSQCLKSATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSV 122

Query: 124 KRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLD 183
           KR  HEGNLQGGKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LD
Sbjct: 123 KRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLD 182

Query: 184 TLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243
           TLP G FGQKNPDAKIQL                                + + C + ++
Sbjct: 183 TLPPGCFGQKNPDAKIQLA-------------------------------KDSCCKQPED 211

Query: 244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEK 303
           I+S  S    +E+KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EK
Sbjct: 212 ISS--SSGNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEK 269

Query: 304 VEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCC 363
           VEEFVNK+ NARLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL C
Sbjct: 270 VEEFVNKVENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRC 329

Query: 364 NVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423
           N IANAANWRLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++VPLPSTSPL  R
Sbjct: 330 NAIANAANWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSR 389

Query: 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNE 483
           EGVTHVIHVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ +Q  L +G +E
Sbjct: 390 EGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSE 449

Query: 484 DIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLS 543
           ++R E                                               LSR   + 
Sbjct: 450 NLRSE-----------------------------------------------LSR---VG 459

Query: 544 ADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
            +NEKIG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLNDLYPK
Sbjct: 460 LNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPK 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440255|ref|XP_004137900.1| PREDICTED: transcription factor bHLH140-like [Cucumis sativus]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/584 (61%), Positives = 424/584 (72%), Gaps = 47/584 (8%)

Query: 12  KDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71
           K +E + K I+VI+VGAPGSGKSTFCE VM SS+RPW RICQDTI  GKSGT+ QCL +A
Sbjct: 8   KGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTA 67

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131
           +SAL  GKSVF+DRCNLE EQR DFVKLGGP+VDVHAVVLDLPA+LCISRSVKR  HEGN
Sbjct: 68  TSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGN 127

Query: 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFG 191
           L GGKAAAVVN+MLQKKELPKL+EGF+RIT C NE+DV +A+D Y  L     LPHG FG
Sbjct: 128 LSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFG 187

Query: 192 QKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKN-SCLEGQEITSLLSD 250
           QKNPD K+QLGI KFLKK + PS T S+A++ ++   PQ T+EK  SC            
Sbjct: 188 QKNPDKKVQLGITKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESC------------ 235

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
                                S SD PTLAFPS+STSDF+F++EKA+++I+EKVEEF++K
Sbjct: 236 ------------------DKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDK 277

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           LGNARLVLVDL+ GSKILS+V+AKA +K+I+  KFFTFVGDIT+L + GGL CNVIANAA
Sbjct: 278 LGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAA 337

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGGVNAAIFSAAG  LEVAT ++A SL PGN+V V LPSTSPL  REGVTHVI
Sbjct: 338 NWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVI 397

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMNP+RPN L+ DY +GC++L  AY+SLF+ F+SIV+ + K  KG +E +   P 
Sbjct: 398 HVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPP 457

Query: 491 VSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             Q HSED H        K KR+     E+SKK K        +N          N    
Sbjct: 458 ELQKHSEDGH-------HKFKRENLQNLERSKKWKGSQNSTEGLN---------QNNNTV 501

Query: 551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
              SK WGSWAQALY TAM+PERH + +LE SDDVVVL D+YPK
Sbjct: 502 PKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPK 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483719|ref|XP_004156669.1| PREDICTED: transcription factor bHLH140-like [Cucumis sativus]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/584 (61%), Positives = 424/584 (72%), Gaps = 47/584 (8%)

Query: 12  KDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71
           K +E + K I+VI+VGAPGSGKSTFCE VM SS+RPW RICQDTI  GKSGT+ QCL +A
Sbjct: 8   KGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTA 67

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131
           +SAL  GKSVF+DRCNLE EQR DFVKLGGP+VDVHAVVLDLPA+LCISRSVKR  HEGN
Sbjct: 68  TSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGN 127

Query: 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFG 191
           L GGKAAAVVN+MLQKKELPKL+EGF+RIT C NE+DV +A+D Y  L     LPHG FG
Sbjct: 128 LSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFG 187

Query: 192 QKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKN-SCLEGQEITSLLSD 250
           QKNPD K+QLGIMKFLKK + PS T S+A++ ++   PQ T+EK  SC            
Sbjct: 188 QKNPDKKVQLGIMKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESC------------ 235

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
                                S SD PTLAFPS+STSDF+F++EKA+++I+ KVEEF++K
Sbjct: 236 ------------------DKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVGKVEEFMDK 277

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           LGNARLVLVDL+ GSKILS+V+AKA +K+I+  KFFTFVGDIT+L + GGL CNVIANAA
Sbjct: 278 LGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAA 337

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGGVNAAIFSAAG  LEVAT ++A SL PGN+V V LPSTSPL  REGVTHVI
Sbjct: 338 NWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVI 397

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMNP+RPN L+ DY +GC++L  AY+SLF+ F+SIV+ + K  KG +E +   P 
Sbjct: 398 HVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPP 457

Query: 491 VSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             Q HSED H        K KR+     E+SKK K        +N          N    
Sbjct: 458 ELQKHSEDGH-------HKFKRENLQNLERSKKWKGSQNSTEGLN---------QNNNTV 501

Query: 551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
              SK WGSWAQALY TAM+PERH + +LE SDDVVVL D+YPK
Sbjct: 502 PKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPK 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240948|ref|NP_195751.1| aprataxin [Arabidopsis thaliana] gi|75335734|sp|Q9M041.1|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcription factor bHLH140 gi|7320709|emb|CAB81914.1| putative protein [Arabidopsis thaliana] gi|332002943|gb|AED90326.1| aprataxin [Arabidopsis thaliana]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/582 (56%), Positives = 414/582 (71%), Gaps = 53/582 (9%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E  K KQI+V+++G PGSGKSTFC+  MRSS RPW+RICQD +N GK+GTK QCL  A+ 
Sbjct: 221 EADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATD 280

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
           +L++GKSVF+DRCNL+REQR++F+KLGGPE +VHAVVL+LPA++CISRSVKR  HEGNLQ
Sbjct: 281 SLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQ 340

Query: 134 GGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQK 193
           GG+AAAVVN+MLQ KELPK++EGFSRI  C ++ DV  A++ Y+ LGP+DTLP G FG+K
Sbjct: 341 GGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEK 400

Query: 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
             D K Q GIMKF KKV A P+++ + A+              N+  +  E+T+      
Sbjct: 401 KLDTKSQPGIMKFFKKVSALPASSSNEAT--------------NTTRKADEMTA------ 440

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
                   N  V+ V + GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG
Sbjct: 441 --------NVRVSPV-KLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLG 491

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
            ARLVLVDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NW
Sbjct: 492 TARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW 551

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHV
Sbjct: 552 RLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHV 611

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K      R   +  
Sbjct: 612 LGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPK------RSSQTAV 665

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVS 552
            D  ED           IK D     E++KK K   +     NL   +    D    G  
Sbjct: 666 SDSGED-----------IKEDS----ERNKKYKGSQDKAVTNNLESES--LEDTRGSGKK 708

Query: 553 TSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
            SK W +WA AL+  AM+PERH++ +LE  D++VV+ND YPK
Sbjct: 709 MSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPK 750

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	611
pfam13671	143	pfam13671, AAA_33, AAA domain	2e-28
cd02908	165	cd02908, Macro_Appr_pase_like, Macro domain, Appr-	2e-11
TIGR01663	526	TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'	5e-10
smart00506	133	smart00506, A1pp, Appr-1"-p processing enzyme	2e-09
pfam01661	117	pfam01661, Macro, Macro domain	2e-09
COG2110	179	COG2110, COG2110, Predicted phosphatase homologous	4e-09
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	1e-08
TIGR04075	851	TIGR04075, bacter_Pnkp, polynucleotide kinase-phos	3e-08
PRK00431	177	PRK00431, PRK00431, RNase III inhibitor; Provision	4e-08
cd02907	175	cd02907, Macro_Af1521_BAL_like, Macro domain, Af15	2e-07
cd02749	147	cd02749, Macro, Macro domain, a high-affinity ADP-	3e-07
cd02903	137	cd02903, Macro_BAL_like, Macro domain, BAL_like fa	1e-06

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score =  110 bits (277), Expect = 2e-28
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 19/146 (13%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------Q 66
           L++MVG PGSGKSTF   ++R        +  DT+ K   G                  +
Sbjct: 1   LILMVGLPGSGKSTFARRLLR--ELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQR 58

Query: 67  CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKR 125
            L  A  AL+ G+ V +D  NL RE+R   + L       V  V L+ P ++   R+ +R
Sbjct: 59  LLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNAQR 118

Query: 126 IEHEGNLQGGKAAAVVNRMLQKKELP 151
            E  G        AV++RML + E P
Sbjct: 119 -ERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 34/92 (36%), Positives = 41/92 (44%), Gaps = 21/92 (22%)

Query: 348 FVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPG 407
             GDIT+L        + I NAAN  L  GGGGV+ AI  AAGP L     E       G
Sbjct: 5   IQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECRELRGCP-TG 56

Query: 408 NSVIVP---LPSTSPLCGREGVTHVIHVLGPN 436
            +VI     LP+           +VIH +GP 
Sbjct: 57  EAVITSGYNLPA----------KYVIHTVGPV 78

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165

>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase

 Score = 62.0 bits (150), Expect = 5e-10
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +VI VG PG+GKS FC+   +     +  +  DT+     G+   CLT+   AL +GK  
Sbjct: 371 MVIAVGFPGAGKSHFCKKFFQP--AGYKHVNADTL-----GSTQNCLTACERALDQGKRC 423

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  F++       +        A L  ++         +    K   +V
Sbjct: 424 AIDNTNPDAASRAKFLQCAR-AAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMV 482

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
              ++KK E P L+EGF  I
Sbjct: 483 FNGMKKKFEAPALAEGFIAI 502

This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog, GP|7108591, appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78. Length = 526

>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 34/125 (27%), Positives = 43/125 (34%), Gaps = 26/125 (20%)

Query: 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERA 401
                 GDIT+         + I NAAN      GGGV  AI  AAG AL          
Sbjct: 1   ILKVVKGDITKPR------ADAIVNAANSDGAH-GGGVAGAIARAAGKALSKEEVRKLAG 53

Query: 402 KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGC-EILRKAY 460
                G +V+          G     +VIH +GP             + K   E+L  AY
Sbjct: 54  GECPVGTAVVTE-------GGNLPAKYVIHAVGPR---------ASGHSKEGFELLENAY 97

Query: 461 TSLFE 465
            +  E
Sbjct: 98  RNCLE 102

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji). Length = 133

>gnl|CDD|216634 pfam01661, Macro, Macro domain

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 17/101 (16%)

Query: 367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAE--RAKSLYPGNSVIVPLPSTSPLCGRE 424
            NAAN  L  GGGGV  AI  AAGPAL     E  +      G +V+ P        G  
Sbjct: 1   VNAANSSLL-GGGGVAGAIHRAAGPALLEECRELKKQGGCPTGEAVVTP-------GGNL 52

Query: 425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFE 465
              +VIH +GP           G   +  E+L  AY +  E
Sbjct: 53  PAKYVIHAVGPIWR-------HGGGEEEEELLASAYRNALE 86

This domain is an ADP-ribose binding module. It is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein. This domain is found in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alphaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria, and eukaryotes. Length = 117

>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 36/86 (41%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDIT+L        + I NAAN +L  GGGGV  AI  AAGP LE   AE A     G  
Sbjct: 10  GDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRI 62

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGP 435
            +     T    GR    +VIH +GP
Sbjct: 63  PVGEAVITEA--GRLPAKYVIHTVGP 86

Length = 179

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 21  ILVIMVGAPGSGKSTFCE------HVMRSSA--RPWARICQDTINKGKSGTKVQCL-TSA 71
           ILV++ GA GSGKSTF +      +V+                 ++         L    
Sbjct: 3   ILVVLRGASGSGKSTFAKENFLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQL 62

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEG 130
              L++GK   +D  NL RE R   + L       ++A+V D P +LC++R+  R     
Sbjct: 63  EQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQ-- 120

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGF 157
                    V+ RML++       E F
Sbjct: 121 -----VPEEVIPRMLRETIDLLEKEPF 142

Length = 168

>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase

 Score = 56.5 bits (137), Expect = 3e-08
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 22  LVIMVGAPGSGKSTFC-EHVMR----SSARPWARICQDTINKGKSGTKVQCL-TSASSAL 75
           LV++VGA GSGKSTF  +H       SS      +  D  ++  S      L   A   L
Sbjct: 10  LVVLVGASGSGKSTFARKHFKPTEVLSSDFCRGLVSDDENDQSASSDAFDVLYYIAGKRL 69

Query: 76  KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH--AVVLDLPAKLCISRSVKRIEHEGNLQ 133
            +G    +D  N++ E R   V L   E  V   A+VLDLP K+C+ R+  R     +  
Sbjct: 70  ARGLLTVIDATNVQPEDRKGLVALA-REYHVLPVAIVLDLPEKVCLERNAAR----PDRD 124

Query: 134 GGKAAAVVNRMLQ--KKELPKLS-EGFSRITLCQNENDVQAA 172
            G    VV R  Q  ++ L  L  EGF ++ + ++  +V AA
Sbjct: 125 FG--PHVVRRQHQELRRSLKGLKREGFRKVHVLRSPEEVDAA 164

Members of this protein family are the bacterial polynucleotide kinase-phosphatase (Pnkp) whose genes occur paired with genes for the 3' terminal RNA ribose 2'-O-methyltransferase Hen1. All members of the seed alignment belong to a cassette with the Hen1. The pair acts in bacterial RNA repair. This enzyme performs end-healing reactions on broken RNA, preparing from the RNA ligase to close the break. The working hypothesis is that the combination of Pnkp (RNA repair) and Hen1 (RNA modification) serves to first repair RNA damage from ribotoxins and then perform a modification that prevents the damage from recurring [Transcription, RNA processing]. Length = 851

>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 42/114 (36%), Positives = 49/114 (42%), Gaps = 25/114 (21%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPA-LEVATAERAK--SLYP 406
           GDIT L        + I NAAN  L  GGGGV+ AI  AAGP  LE     R +      
Sbjct: 10  GDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPT 62

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAY 460
           G +VI     TS   GR    +VIH +GP    R             E+L  AY
Sbjct: 63  GEAVI-----TSA--GRLPAKYVIHTVGPVW--RGGED------NEAELLASAY 101

Length = 177

>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 26/114 (22%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE---RAKSLYP 406
           GDITR         + I NAAN  LK  GGG+  AI  A GP ++  + E   +   +  
Sbjct: 9   GDITRFPV------DAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPT 61

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP-NMNPRRPNCLDGDYVKGCEILRKA 459
           G  V+     TS   G+    +VIH +GP         C         E L+KA
Sbjct: 62  GEVVV-----TSA--GKLPCKYVIHAVGPRWSGGEAEEC--------VEKLKKA 100

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains of BAL (B-aggressive lymphoma) proteins which contain multiple macro domains. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 175

>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY--PG 407
           GDIT+         + I NAAN   +  GGGVN AI   AG  LE  + +  K L    G
Sbjct: 7   GDITKPLG-----SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVG 60

Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLF 464
            +V+            +G  ++IH++GP  N        G+     E+L+ AY +  
Sbjct: 61  EAVLT------KGYNLDGAKYLIHIVGPKYN-------QGNNKAAFELLKNAYENCL 104

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Length = 147

>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDI    T      +VI N+ N  L    GGV+ AI   AGP L+    +       G S
Sbjct: 8   GDIEDETT------DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVG-S 60

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGC--EILRKAYTSL 463
           VIV    T    G     +V HV+ PN +      L  D V  C  +    +YTS+
Sbjct: 61  VIV----TKG--GNLPCKYVYHVVLPNWSNGALKIL-KDIVSECLEKCEELSYTSI 109

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	611
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	99.95
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	99.94
PRK04143	264	hypothetical protein; Provisional	99.92
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.92
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.91
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.9
PRK00431	177	RNase III inhibitor; Provisional	99.9
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.89
COG2110	179	Predicted phosphatase homologous to the C-terminal	99.86
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	99.86
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.78
COG4639	168	Predicted kinase [General function prediction only	99.76
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	99.75
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	99.74
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.73
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	99.68
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	99.64
PRK06762	166	hypothetical protein; Provisional	99.64
PHA02530	300	pseT polynucleotide kinase; Provisional	99.6
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	99.59
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.58
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.57
PRK13341	725	recombination factor protein RarA/unknown domain f	99.57
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.52
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.51
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.5
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.49
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.46
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.41
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.4
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.39
PRK14527	191	adenylate kinase; Provisional	99.38
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	99.37
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.35
PRK14531	183	adenylate kinase; Provisional	99.34
PRK14532	188	adenylate kinase; Provisional	99.34
COG0645	170	Predicted kinase [General function prediction only	99.33
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	99.33
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	99.3
PRK14737	186	gmk guanylate kinase; Provisional	99.27
PRK04143	264	hypothetical protein; Provisional	99.25
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.25
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.25
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.24
PRK00279	215	adk adenylate kinase; Reviewed	99.22
PLN02674	244	adenylate kinase	99.22
PRK09825	176	idnK D-gluconate kinase; Provisional	99.21
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.21
PRK14530	215	adenylate kinase; Provisional	99.19
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.18
PLN02200	234	adenylate kinase family protein	99.18
PRK11545	163	gntK gluconate kinase 1; Provisional	99.18
PRK14528	186	adenylate kinase; Provisional	99.17
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.16
PRK13808	333	adenylate kinase; Provisional	99.16
PRK14529	223	adenylate kinase; Provisional	99.15
PRK02496	184	adk adenylate kinase; Provisional	99.13
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.13
PRK06217	183	hypothetical protein; Validated	99.12
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.1
PLN02459	261	probable adenylate kinase	99.1
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	99.1
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.08
PRK14738	206	gmk guanylate kinase; Provisional	99.06
PRK14526	211	adenylate kinase; Provisional	99.05
PRK08118	167	topology modulation protein; Reviewed	99.05
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.04
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.04
PTZ00088	229	adenylate kinase 1; Provisional	99.03
PRK13946	184	shikimate kinase; Provisional	99.01
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.99
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.99
PRK07261	171	topology modulation protein; Provisional	98.97
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.97
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.96
PRK05541	176	adenylylsulfate kinase; Provisional	98.94
PRK13948	182	shikimate kinase; Provisional	98.94
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	98.94
PRK00131	175	aroK shikimate kinase; Reviewed	98.94
PRK00300	205	gmk guanylate kinase; Provisional	98.94
PLN02772	398	guanylate kinase	98.93
PRK03846	198	adenylylsulfate kinase; Provisional	98.93
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.92
PRK13947	171	shikimate kinase; Provisional	98.91
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.91
PRK06547	172	hypothetical protein; Provisional	98.88
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.87
PRK05057	172	aroK shikimate kinase I; Reviewed	98.87
PRK01184	184	hypothetical protein; Provisional	98.87
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.87
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.86
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.86
PRK03839	180	putative kinase; Provisional	98.86
KOG3062	281	consensus RNA polymerase II elongator associated p	98.86
PRK08356	195	hypothetical protein; Provisional	98.85
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	98.84
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	98.83
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.83
PRK00889	175	adenylylsulfate kinase; Provisional	98.83
PRK00625	173	shikimate kinase; Provisional	98.82
PLN02842	505	nucleotide kinase	98.8
PRK13949	169	shikimate kinase; Provisional	98.79
PRK06696	223	uridine kinase; Validated	98.78
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	98.77
PRK05480	209	uridine/cytidine kinase; Provisional	98.77
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	98.77
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.75
PRK04040	188	adenylate kinase; Provisional	98.75
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.74
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.73
PRK00431	177	RNase III inhibitor; Provisional	98.73
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.72
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.72
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.68
COG2110	179	Predicted phosphatase homologous to the C-terminal	98.67
PRK04182	180	cytidylate kinase; Provisional	98.67
PRK13975	196	thymidylate kinase; Provisional	98.65
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.64
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.64
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.62
PTZ00301	210	uridine kinase; Provisional	98.62
PRK03731	171	aroL shikimate kinase II; Reviewed	98.61
PRK08233	182	hypothetical protein; Provisional	98.6
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.59
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.59
PHA02595	154	tk.4 hypothetical protein; Provisional	98.59
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.58
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.57
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.57
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.56
PRK00698	205	tmk thymidylate kinase; Validated	98.55
PRK12338	319	hypothetical protein; Provisional	98.55
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.55
COG3709	192	Uncharacterized component of phosphonate metabolis	98.54
PRK13973	213	thymidylate kinase; Provisional	98.51
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.5
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.5
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.5
PRK07667	193	uridine kinase; Provisional	98.47
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.47
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.46
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.42
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	98.41
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.41
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.41
PLN02199	303	shikimate kinase	98.4
PTZ00451	244	dephospho-CoA kinase; Provisional	98.38
PLN02422	232	dephospho-CoA kinase	98.37
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.36
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.35
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.34
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.33
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.31
PLN02348	395	phosphoribulokinase	98.31
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.29
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.29
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.27
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.27
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.26
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	98.24
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.24
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.22
PRK07429	327	phosphoribulokinase; Provisional	98.18
PLN02924	220	thymidylate kinase	98.18
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.12
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.1
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	98.07
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.04
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.03
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.02
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.99
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.99
PRK13974	212	thymidylate kinase; Provisional	97.97
PRK15453	290	phosphoribulokinase; Provisional	97.97
PRK06761	282	hypothetical protein; Provisional	97.96
PRK05439	311	pantothenate kinase; Provisional	97.96
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	97.95
PRK07933	213	thymidylate kinase; Validated	97.93
PLN02318	656	phosphoribulokinase/uridine kinase	97.92
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.91
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.9
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.88
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.87
PRK13341	725	recombination factor protein RarA/unknown domain f	97.87
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.85
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.85
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	97.85
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.84
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.83
PLN02165	334	adenylate isopentenyltransferase	97.79
PF00004	132	AAA: ATPase family associated with various cellula	97.78
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.77
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	97.74
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.73
PHA00729	226	NTP-binding motif containing protein	97.7
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.7
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	97.64
PRK00023	225	cmk cytidylate kinase; Provisional	97.58
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.56
PRK13976	209	thymidylate kinase; Provisional	97.53
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.5
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.48
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.37
COG1660	286	Predicted P-loop-containing kinase [General functi	97.37
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.35
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.31
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	97.31
smart00382	148	AAA ATPases associated with a variety of cellular	97.29
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.25
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.2
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.17
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.16
PRK09087	226	hypothetical protein; Validated	97.14
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.14
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.13
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.11
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.1
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	97.09
CHL00195	489	ycf46 Ycf46; Provisional	97.09
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	97.09
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.08
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.07
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.06
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.04
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.01
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.96
PRK10867	433	signal recognition particle protein; Provisional	96.96
PRK14974	336	cell division protein FtsY; Provisional	96.95
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.94
PHA02544	316	44 clamp loader, small subunit; Provisional	96.94
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.93
TIGR00959	428	ffh signal recognition particle protein. This mode	96.93
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.9
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.9
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.85
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.85
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.84
PRK06620	214	hypothetical protein; Validated	96.83
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.83
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.82
PRK10416	318	signal recognition particle-docking protein FtsY;	96.81
PF13173	128	AAA_14: AAA domain	96.8
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.8
PHA03132	580	thymidine kinase; Provisional	96.78
PRK08084	235	DNA replication initiation factor; Provisional	96.78
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.78
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.77
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	96.77
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.77
PLN02840	421	tRNA dimethylallyltransferase	96.76
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.71
CHL00181	287	cbbX CbbX; Provisional	96.69
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.62
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.62
PRK12377	248	putative replication protein; Provisional	96.6
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.6
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.6
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.59
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.59
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.54
PRK13342	413	recombination factor protein RarA; Reviewed	96.51
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.5
PLN02748	468	tRNA dimethylallyltransferase	96.48
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.47
COG5324	758	Uncharacterized conserved protein [Function unknow	96.46
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.45
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.44
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.44
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.42
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.42
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.41
PHA02244	383	ATPase-like protein	96.41
PF14519	280	Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ	96.4
PRK08116	268	hypothetical protein; Validated	96.34
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.34
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.34
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	96.27
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.27
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.27
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.27
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.27
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.26
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.26
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.25
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.24
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.2
cd03331	152	Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam	96.18
PRK04296	190	thymidine kinase; Provisional	96.17
PLN03025	319	replication factor C subunit; Provisional	96.17
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.16
PRK06893	229	DNA replication initiation factor; Validated	96.15
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.15
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.15
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.14
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.1
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.1
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.09
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.09
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.08
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	96.06
PRK04195	482	replication factor C large subunit; Provisional	96.05
PRK08727	233	hypothetical protein; Validated	96.05
PRK05642	234	DNA replication initiation factor; Validated	96.05
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	96.05
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.04
CHL00176	638	ftsH cell division protein; Validated	96.03
KOG1533	290	consensus Predicted GTPase [General function predi	96.02
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.02
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.01
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.0
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.0
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.98
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.97
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.96
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.95
PLN03046	460	D-glycerate 3-kinase; Provisional	95.94
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	95.94
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.93
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.92
PRK09183	259	transposase/IS protein; Provisional	95.91
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.9
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.89
PLN02796	347	D-glycerate 3-kinase	95.89
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	95.89
PRK06921	266	hypothetical protein; Provisional	95.88
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	95.88
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.86
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	95.85
PRK12402	337	replication factor C small subunit 2; Reviewed	95.85
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.82
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.8
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.78
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.75
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	95.74
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.71
PRK07952	244	DNA replication protein DnaC; Validated	95.7
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.69
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.69
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.69
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.68
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.65
PF05729	166	NACHT: NACHT domain	95.65
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	95.64
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	95.64
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	95.63
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	95.62
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.62
PRK12422	445	chromosomal replication initiation protein; Provis	95.6
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.6
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.59
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.57
PRK08181	269	transposase; Validated	95.56
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.55
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	95.54
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	95.53
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.52
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.51
PF13245	76	AAA_19: Part of AAA domain	95.51
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.51
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.48
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	95.47
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	95.45
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.44
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	95.44
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	95.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.42
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.4
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	95.37
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	95.35
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.34
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.34
PRK06835	329	DNA replication protein DnaC; Validated	95.33
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	95.32
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	95.31
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.3
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	95.29
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.29
PRK06526	254	transposase; Provisional	95.28
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.26
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	95.25
PF07726	131	AAA_3: ATPase family associated with various cellu	95.24
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.23
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	95.2
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	95.19
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.18
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.17
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	95.16
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.14
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	95.11
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.1
PRK05564	313	DNA polymerase III subunit delta'; Validated	95.1
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.1
PRK14086	617	dnaA chromosomal replication initiation protein; P	95.08
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	95.08
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.06
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.06
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.04
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	95.03
CHL00206	2281	ycf2 Ycf2; Provisional	95.02
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	95.02
cd00983	325	recA RecA is a bacterial enzyme which has roles in	95.01
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.01
PRK08533	230	flagellar accessory protein FlaH; Reviewed	95.01
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	95.01
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	95.0
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	95.0
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	94.99
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.99
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.99
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	94.99
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	94.96
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.95
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.95
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.94
PRK00089	292	era GTPase Era; Reviewed	94.93
PRK05707	328	DNA polymerase III subunit delta'; Validated	94.88
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	94.88
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	94.87
COG4240	300	Predicted kinase [General function prediction only	94.83
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	94.83
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.82
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.81
PRK13768	253	GTPase; Provisional	94.8
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	94.8
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.8
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.77
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.76
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	94.76
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	94.72
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.72
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	94.72
PRK08939	306	primosomal protein DnaI; Reviewed	94.69
PRK04328	249	hypothetical protein; Provisional	94.68
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.64
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	94.63
PRK08099	399	bifunctional DNA-binding transcriptional repressor	94.63
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	94.62
PRK08058	329	DNA polymerase III subunit delta'; Validated	94.61
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	94.61
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.58
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.57
PRK13851	344	type IV secretion system protein VirB11; Provision	94.56
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.54
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.54
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	94.54
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	94.53
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	94.53
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	94.52
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	94.52
TIGR02237	209	recomb_radB DNA repair and recombination protein R	94.5
PRK09169	2316	hypothetical protein; Validated	94.49
cd01394	218	radB RadB. The archaeal protein radB shares simila	94.48
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	94.48
COG1855	604	ATPase (PilT family) [General function prediction	94.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.44
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.43
PF13479	213	AAA_24: AAA domain	94.42
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.42
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	94.33
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.29
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	94.28
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	94.28
PRK07940	394	DNA polymerase III subunit delta'; Validated	94.27
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	94.27
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	94.25
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	94.24
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	94.23
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	94.22
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.17
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	94.16
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	94.14
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	94.14
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	94.13
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	94.12
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	94.11
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.08
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	94.07
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.07
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.05
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.05
PRK05973	237	replicative DNA helicase; Provisional	94.04
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.04
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	94.03
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	94.03
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.03
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	94.02
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.02
PRK15455	644	PrkA family serine protein kinase; Provisional	94.01
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.98
KOG0736	953	consensus Peroxisome assembly factor 2 containing	93.96
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.96
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.94
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	93.92
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	93.92
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	93.91
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.9
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.89

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=99.95  E-value=2.3e-27  Score=231.03  Aligned_cols=115  Identities=19%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             cCCeEEEEEEccc--ceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecC
Q 007244          340 INPKKFFTFVGDI--TRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL  414 (611)
Q Consensus       340 ~~~~~v~i~~GDI--t~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l  414 (611)
                      +.+.+|.|++|||  |++.      +||||||||.+|. ++|||++||+++||++|++||+++.   +++++|++++|+ 
T Consensus        15 ~~~~~i~i~~gDI~~t~~~------vDaIVNaaN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~-   86 (186)
T cd02904          15 FLGQKLSLVQSDISIGSID------VEGIVHPTNADID-LKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQ-   86 (186)
T ss_pred             cCCCEEEEEECCcccccee------ccEEEcCCccccC-CCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEcc-
Confidence            4568899999999  9987      9999999999999 8999999999999999999998763   789999999998 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                           + .+|+|+||||+|||.|+..          +.+++|++||++||++|     .|||||+||-+
T Consensus        87 -----a-~~Lp~k~VIHtVgP~~~~~----------~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG  139 (186)
T cd02904          87 -----A-HGLPAKFVIHCHSPQWGSD----------KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSG  139 (186)
T ss_pred             -----C-CCCCCCEEEEeCCCCCCCC----------chHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence                 3 4488999999999999654          23689999999999997     59999999943

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=99.94  E-value=3.8e-27  Score=220.61  Aligned_cols=113  Identities=20%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 007244          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR  423 (611)
Q Consensus       344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~  423 (611)
                      +|.|++||||++.      +|||||+||+.|. ++|||++||+++||++|++||++. +++++|++++|+      +| +
T Consensus         2 ki~l~~GdIt~~~------vDaIVNaan~~l~-~~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~------~~-~   66 (140)
T cd02905           2 RIVLWEGDICNLN------VDAIVNSTNETLT-DKNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTK------GY-N   66 (140)
T ss_pred             eEEEEeCccCccc------CCEEEeCCccccC-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEec------CC-C
Confidence            5889999999998      9999999999999 899999999999999999999987 679999999998      33 4


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       424 l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                      |+|+||||+|||+|+...++       .+.++|++||+++|++|     .|||||+||-+
T Consensus        67 L~~k~VIH~vgP~~~~~~~~-------~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG  119 (140)
T cd02905          67 LPARFIIHTVGPKYNVKYRT-------AAENALYSCYRNVLQLAKELGLESIALCVISSE  119 (140)
T ss_pred             CCccEEEEecCCccCCCCCc-------HHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence            78999999999999875432       45789999999999986     59999999933

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>PRK04143 hypothetical protein; Provisional

Probab=99.92  E-value=4.9e-25  Score=225.34  Aligned_cols=118  Identities=29%  Similarity=0.322  Sum_probs=101.6

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCC-----ChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEE
Q 007244          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-----GGVNAAIFSAAGPALEVATAERA----KSLYPGNSVI  411 (611)
Q Consensus       341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~g-----gGVa~aI~~aAG~~l~~e~~~~~----~~~~~G~~v~  411 (611)
                      .+.+|.|++||||++.      +||||||||+.|. ++     |||++||+++||++|+++|++..    +.+++|++++
T Consensus        81 ~~~~i~i~~GDIt~l~------vDAIVNAANs~L~-g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~i  153 (264)
T PRK04143         81 KYDNIFLWQGDITRLK------VDAIVNAANSRLL-GCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKI  153 (264)
T ss_pred             CCCEEEEEECCcceee------cCEEEeCcccccc-cCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEE
Confidence            5688999999999998      9999999999998 44     89999999999999999999873    4689999999


Q ss_pred             ecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          412 VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       412 T~l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                      |+      +| .|+|+||||||||.|+.+..      .....++|++||++||++|     .||||||||-+
T Consensus       154 T~------~~-nLp~kyVIHtVgP~~~~g~~------~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTG  212 (264)
T PRK04143        154 TR------AY-NLPAKYVIHTVGPIIRKQPV------SPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTG  212 (264)
T ss_pred             ec------CC-CCCCCEEEEECCCcccCCCC------CcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence            98      34 47899999999999987321      1245789999999999987     49999999933

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.92  E-value=8e-25  Score=206.63  Aligned_cols=116  Identities=28%  Similarity=0.279  Sum_probs=99.2

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcC----CCChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEEecCC
Q 007244          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKP----GGGGVNAAIFSAAGPALEVATAERA----KSLYPGNSVIVPLP  415 (611)
Q Consensus       344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~----~ggGVa~aI~~aAG~~l~~e~~~~~----~~~~~G~~v~T~l~  415 (611)
                      +|+|++|||+++.      +||||||||..|..    ++|||++||+++||++|+++|+++.    +.+++|++++|+  
T Consensus         1 ~i~v~~GdIt~~~------~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~--   72 (147)
T cd02906           1 SIYLWKGDITTLK------VDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITP--   72 (147)
T ss_pred             CeEEEECCcCCcc------CCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEe--
Confidence            4789999999998      99999999999972    3489999999999999999998873    368999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                          ++ .|+|+||||+|||.|+.....      ....++|++||+++|+.+     .|||||+||-+
T Consensus        73 ----~~-~L~~k~VIHavgP~~~~~~~~------~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG  129 (147)
T cd02906          73 ----GY-NLPAKYVIHTVGPIIERGLTT------PIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTG  129 (147)
T ss_pred             ----CC-CCCCCEEEEECCCcccCCCCC------ccHHHHHHHHHHHHHHHHHHcCCCEEEECccccc
Confidence                33 478899999999999875321      145789999999999987     59999999933

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.91  E-value=4.8e-24  Score=204.93  Aligned_cols=112  Identities=35%  Similarity=0.400  Sum_probs=99.7

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 007244          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR  423 (611)
Q Consensus       344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~  423 (611)
                      +|+|++|||+++.      +||||||||..|. ++|||++||+++||++|++||++. +++++|++++|+      + +.
T Consensus         1 ~i~i~~GdI~~~~------~daIVn~an~~l~-~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~------~-~~   65 (165)
T cd02908           1 KIEIIQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITS------G-YN   65 (165)
T ss_pred             CeEEEecccceee------cCEEEECCCCccc-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEee------C-CC
Confidence            4789999999998      9999999999999 899999999999999999999987 678999999998      2 34


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       424 l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                      |+|++|||+|||.|+....        ...++|++||+++|+.+     .|||||+||-+
T Consensus        66 l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG  117 (165)
T cd02908          66 LPAKYVIHTVGPVWRGGQH--------NEAELLASCYRNSLELARENGLRSIAFPAISTG  117 (165)
T ss_pred             CCCCEEEEEcCCcccCCCC--------cHHHHHHHHHHHHHHHHHHcCCCEEEECceecC
Confidence            7899999999999976522        35789999999999976     58999999943

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.90  E-value=1.1e-23  Score=204.25  Aligned_cols=116  Identities=30%  Similarity=0.378  Sum_probs=102.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS  418 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~  418 (611)
                      |++|+|++|||+++.      +||||||+|..|. ++|||++||+++||++|+++|++.   .+++++|++++|+     
T Consensus         1 ~~~i~i~~GdI~~~~------~DaIVn~an~~~~-~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~-----   68 (175)
T cd02907           1 GVTLSVIKGDITRFP------VDAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTS-----   68 (175)
T ss_pred             CcEEEEEECCcceee------cCEEEECCCCCcC-CCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEec-----
Confidence            578999999999997      9999999999999 899999999999999999999876   3789999999998     


Q ss_pred             CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       419 ~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                       + +.|+|++|||+|||.|+....       ....++|++||++||+.+     .|||||+||-+
T Consensus        69 -~-~~L~~k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG  124 (175)
T cd02907          69 -A-GKLPCKYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKAEELGLRSIAIPAISSG  124 (175)
T ss_pred             -C-CCCCCCEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence             2 447899999999999987532       246789999999999986     49999999933

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>PRK00431 RNase III inhibitor; Provisional

Probab=99.90  E-value=1.7e-23  Score=203.26  Aligned_cols=116  Identities=34%  Similarity=0.393  Sum_probs=103.3

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCC
Q 007244          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST  417 (611)
Q Consensus       341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~~  417 (611)
                      +|++|.|++|||+++.      +||||||+|..|. ++|||++||+++||++|+++|+++.   +++++|++++|+    
T Consensus         1 ~~~~i~i~~Gdi~~~~------~daIVn~aN~~~~-~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~----   69 (177)
T PRK00431          1 MGMRIEVVQGDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITS----   69 (177)
T ss_pred             CCcEEEEEeCCccccc------CCEEEECCCcccc-CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEec----
Confidence            4789999999999997      9999999999999 8999999999999999999999873   789999999998    


Q ss_pred             CCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       418 ~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                        + +.|+|++|||+|||.|+....        .+.+.|++||+++|+.+     .|||||+||.+
T Consensus        70 --~-~~l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG  124 (177)
T PRK00431         70 --A-GRLPAKYVIHTVGPVWRGGED--------NEAELLASAYRNSLRLAAELGLRSIAFPAISTG  124 (177)
T ss_pred             --C-CCCCCCEEEEecCCeecCCCC--------cHHHHHHHHHHHHHHHHHHcCCceEEECccccC
Confidence              2 348899999999999986532        25789999999999876     59999999943

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.89  E-value=5.8e-23  Score=191.70  Aligned_cols=110  Identities=25%  Similarity=0.248  Sum_probs=96.0

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCC-CcCCCChhhHHHHHhhcHHHHHHHHHhcCCCC-CCCEEEecCCCCCCC
Q 007244          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWR-LKPGGGGVNAAIFSAAGPALEVATAERAKSLY-PGNSVIVPLPSTSPL  420 (611)
Q Consensus       343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~-L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~-~G~~v~T~l~~~~~~  420 (611)
                      .+|+|++|||++++      +||||||||.. +. ++|||+++|+++||++|+++|+++. ... +|++++|+      +
T Consensus         1 ~~i~i~~GdI~~~~------~DaIVN~an~~~~~-~~ggv~~aI~~~~G~~l~~~~~~~~-~~~~~G~~~vT~------~   66 (137)
T cd02903           1 LTLQVAKGDIEDET------TDVIVNSVNPDLFL-LKGGVSKAILRKAGPELQKELDKAK-LGQTVGSVIVTK------G   66 (137)
T ss_pred             CEEEEEeCccCCcc------CCEEEECCCCccCC-CCCCHHHHHHHhccHHHHHHHHHHc-CCCCCCeEEEec------C
Confidence            36899999999998      99999999999 66 8999999999999999999999873 344 69999998      2


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                       +.|+|++|||+++|+|...           ..+.|++||++||+.+     .|||||+||-+
T Consensus        67 -~~L~~k~IiH~~~p~~~~~-----------~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG  117 (137)
T cd02903          67 -GNLPCKYVYHVVLPNWSNG-----------ALKILKDIVSECLEKCEELSYTSISFPAIGTG  117 (137)
T ss_pred             -CCCCCCEEEEecCCCCCCc-----------hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCc
Confidence             3478899999999998643           3689999999999986     59999999943

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=99.86  E-value=9.2e-22  Score=190.23  Aligned_cols=115  Identities=37%  Similarity=0.458  Sum_probs=100.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc-----CCCCCCCEEEecCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA-----KSLYPGNSVIVPLPS  416 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~-----~~~~~G~~v~T~l~~  416 (611)
                      ...|.+++||||++.      +|+|||+||+.|. +||||+.||++++||+|+.+|.+..     +.+++|++++|+   
T Consensus         2 ~~~i~~v~GDIt~~~------~daIVnaAN~~l~-~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~---   71 (179)
T COG2110           2 MTNIRVVQGDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITE---   71 (179)
T ss_pred             CceEEEEecccceee------hhheeecccccCC-CCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEcc---
Confidence            457999999999997      9999999999999 9999999999999999999999973     337789999999   


Q ss_pred             CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       417 ~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                          ..++..+||||+|||.|....+        ...+.|..||+++|+++     .|||||+|+.+
T Consensus        72 ----~~~l~a~~ViH~vgp~~~~g~~--------~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistG  126 (179)
T COG2110          72 ----AGRLPAKYVIHTVGPSWRGGSK--------DEAELLAAAYRAALRLAKEAGVRSVAFPAISTG  126 (179)
T ss_pred             ----CcCCCCCEEEecCCCcccCCCh--------hHHHHHHHHHHHHHHHHHHcCCceeecccccCc
Confidence                2446779999999999877633        34689999999999986     59999999944

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=99.86  E-value=3e-21  Score=178.87  Aligned_cols=109  Identities=30%  Similarity=0.325  Sum_probs=96.7

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCC
Q 007244          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE  424 (611)
Q Consensus       345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~l  424 (611)
                      |++++|||+++.      +|+|||++|..+. ++|||+++|++++|++++++|.+. +.+++|++++|+       .+.|
T Consensus         2 i~i~~GdI~~~~------~DaIVn~~N~~~~-~g~Gva~ai~~~~G~~~~~~~~~~-~~~~~G~~~~t~-------~~~l   66 (133)
T cd03330           2 LEVVQGDITKVD------ADAIVNAANSRLR-MGGGVAGAIKRAGGSVIEREAVRK-APIPVGEAVITG-------AGDL   66 (133)
T ss_pred             EEEEEccccccc------CCEEEeCCCCCCC-CCCcHHHHHHHHhCHHHHHHHHHc-CCCCCCeEEEEe-------CCCC
Confidence            789999999997      9999999999999 899999999999999999999886 789999999997       2447


Q ss_pred             CccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244          425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS  478 (611)
Q Consensus       425 ~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~  478 (611)
                      +|++|||+++|.+.. .         ...+.|++||+++|+.+.     |||||+||.+
T Consensus        67 ~~k~Iih~~~~~~~~-~---------~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG  115 (133)
T cd03330          67 PARYVIHAATMEEPG-R---------SSEESVRKATRAALALADELGIESVAFPAMGTG  115 (133)
T ss_pred             CCCEEEEeCCCCCCC-C---------CHHHHHHHHHHHHHHHHHHcCCCEEEECccccc
Confidence            889999999998654 2         236799999999999874     9999999944

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.78  E-value=1.9e-18  Score=192.44  Aligned_cols=141  Identities=26%  Similarity=0.420  Sum_probs=126.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~   95 (611)
                      ...+|.||+|+|+|||||||||++++...+  +.+|++|.+.     .+..|...++++|+.|++||||+||..+..|..
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g--~~~vn~D~lg-----~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~  437 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTLG-----STQNCLTACERALDQGKRCAIDNTNPDAASRAK  437 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHcC--CeEECcHHHH-----HHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHH
Confidence            357899999999999999999999999876  7889999884     467788999999999999999999999999999


Q ss_pred             HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus        96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                      |+.+ +.+++.+.+++|++|.++|++|++.|..... ....+++.++.+|.+.|++|...|||..|+.++
T Consensus       438 ~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~-s~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~  506 (526)
T TIGR01663       438 FLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDS-AHIKIKDMVFNGMKKKFEAPALAEGFIAIHEIN  506 (526)
T ss_pred             HHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCc-ccCCCCHHHHHHHHhhCCCCCcccCceEEEEEe
Confidence            9999 9999999999999999999999999976322 123578899999999999999999999998776

Note that the EC number for the kinase function is: 2.7.1.78

>COG4639 Predicted kinase [General function prediction only]

Probab=99.76  E-value=4.2e-18  Score=159.61  Aligned_cols=138  Identities=27%  Similarity=0.345  Sum_probs=116.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------------CCCcHHHHHHHHHHHHHCCCcEEEec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------KSGTKVQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------------~~~~~~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ++.|++|+|+|||||||||+..+..    ...++.|+++..             +...|+.+++.++++|++|+..|||+
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n~~~----~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA   76 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKENFLQ----NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA   76 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHhCCC----cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence            5789999999999999999987765    345777777531             11245567789999999999999999


Q ss_pred             CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus        86 tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                      ||+.+++|+.++++ +.+++...+|+||+|.+.|.+|+..|.+       .+|++++.+|.+....+...|+|..+..+.
T Consensus        77 tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R-------qv~~~VI~r~~r~~~~~l~~e~~~~~~~~~  149 (168)
T COG4639          77 TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER-------QVPEEVIPRMLRETIDLLEKEPFRYVWTLS  149 (168)
T ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch-------hCCHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            99999999999999 9999999999999999999999997776       699999999999866677789988777665


Q ss_pred             Chh
Q 007244          165 NEN  167 (611)
Q Consensus       165 ~~~  167 (611)
                      .++
T Consensus       150 s~e  152 (168)
T COG4639         150 SPE  152 (168)
T ss_pred             CHH
Confidence            443

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=99.75  E-value=1.1e-17  Score=153.68  Aligned_cols=112  Identities=33%  Similarity=0.359  Sum_probs=95.4

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH-HHHHHHhc-CCCCCCCEEEecCCCCCCCCC
Q 007244          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL-EVATAERA-KSLYPGNSVIVPLPSTSPLCG  422 (611)
Q Consensus       345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l-~~e~~~~~-~~~~~G~~v~T~l~~~~~~~~  422 (611)
                      +++++|||+++.      +|+|||++|..+. ++||++++|++++|+++ ++++++.. +.+++|++++|+.       +
T Consensus         2 i~~~~Gdi~~~~------~d~IV~~~n~~~~-~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~-------~   67 (133)
T smart00506        2 LKVVKGDITKPR------ADAIVNAANSDGA-HGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEG-------G   67 (133)
T ss_pred             eEEEeCCCCccc------CCEEEECCCcccC-CCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecC-------C
Confidence            678999999997      9999999999999 89999999999999996 66666553 3689999999982       2


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       423 ~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                      .+++++|||+++|+|....        ..+.+.|++||++||+.+     .|||||.||.+
T Consensus        68 ~~~~~~Iih~~~p~~~~~~--------~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG  120 (133)
T smart00506       68 NLPAKYVIHAVGPRASGHS--------NEGFELLENAYRNCLELAIELGITSVAIPLIGTG  120 (133)
T ss_pred             CCCCCEEEEeCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence            3678999999999997642        245799999999999886     49999999944

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=99.74  E-value=1.5e-17  Score=155.72  Aligned_cols=113  Identities=32%  Similarity=0.391  Sum_probs=96.7

Q ss_pred             EEEEEcccce-ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcC--CCCCCCEEEecCCCCCCCC
Q 007244          345 FFTFVGDITR-LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK--SLYPGNSVIVPLPSTSPLC  421 (611)
Q Consensus       345 v~i~~GDIt~-~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~--~~~~G~~v~T~l~~~~~~~  421 (611)
                      |.+++|||++ ..      +|+|||++|..+. ++||++++|++++|+++++++++...  .+++|++++|+      .+
T Consensus         2 i~~~~GDi~~~~~------~d~IVn~~n~~~~-~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~------~~   68 (147)
T cd02749           2 IKVVSGDITKPLG------SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTK------GY   68 (147)
T ss_pred             EEEEECCCCCCCC------CCEEEeCCCCCCC-CCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECc------CC
Confidence            6789999999 76      9999999999999 89999999999999999999998743  25899999998      22


Q ss_pred             CCCC-ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          422 GREG-VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       422 ~~l~-~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                       .++ +++|||+++|.|....+       ..+.++|++||++||..+     .|||||.||.+
T Consensus        69 -~~~~~~~vih~~~p~~~~~~~-------~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG  123 (147)
T cd02749          69 -NLDGAKYLIHIVGPKYNQGNN-------KAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTG  123 (147)
T ss_pred             -CCCcCCEEEEeCCCCCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence             344 89999999999987532       245789999999999875     47999999943

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.73  E-value=2e-17  Score=152.99  Aligned_cols=127  Identities=31%  Similarity=0.417  Sum_probs=100.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC----C----CC-------cHHHHHHHHHHHHHCCCcEEEecC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG----K----SG-------TKVQCLTSASSALKKGKSVFLDRC   86 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~----~----~~-------~~~~~~~~~~~~L~~Gk~VIID~t   86 (611)
                      ||+|+|+|||||||||+.+++.++  +.+|+.|.++..    .    ..       .+..+...+..++..|.++|||.|
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~   78 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNT   78 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccC
Confidence            799999999999999999999988  788999988521    1    11       111234677888999999999999


Q ss_pred             CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (611)
Q Consensus        87 nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P  151 (611)
                      ++....|..|..+ +..++.+.+|+|++|.+++.+|+..|..+.+ ....++.+.+++|++.|+.|
T Consensus        79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~p  143 (143)
T PF13671_consen   79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD-KRFEVPEEVFDRMLARFEPP  143 (143)
T ss_dssp             --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT-TS----HHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc-ccccCcHHHHHHHHHhhccC
Confidence            9999999999999 8999999999999999999999999998643 23358999999999999887

...

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=99.68  E-value=1.4e-16  Score=155.71  Aligned_cols=128  Identities=20%  Similarity=0.134  Sum_probs=93.4

Q ss_pred             eEEEEEEcccceecc----cCcccccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh-----cCCCCCCCEEEe
Q 007244          343 KKFFTFVGDITRLYT----GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER-----AKSLYPGNSVIV  412 (611)
Q Consensus       343 ~~v~i~~GDIt~~~~----~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG-~~l~~e~~~~-----~~~~~~G~~v~T  412 (611)
                      ..+.++.|+++++..    .....+|+||||||+.+. +||||+.||++++| ++|+++|++.     .+.+++|++++|
T Consensus        19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~-mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it   97 (186)
T cd02900          19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGY-LDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV   97 (186)
T ss_pred             CCeEEEeCCceecchhhcccccCccCEEEeCCCcccC-CCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence            346666666665531    011228999999999999 99999999999999 6999999764     378999999999


Q ss_pred             cCCC---CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-------HHhhccccCCCC
Q 007244          413 PLPS---TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-------LSIVRSQEKLSK  479 (611)
Q Consensus       413 ~l~~---~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-------~siafp~~~~~~  479 (611)
                      +...   .-..+++.+++||||++++.+.....        ...+.|+.||+++|..+       .|||||+||-+.
T Consensus        98 ~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~--------~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGv  166 (186)
T cd02900          98 PLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVI--------TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGY  166 (186)
T ss_pred             cCCCCccccccccccCCCEEEEcCcccCCCCCC--------CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCC
Confidence            9221   00013444599999998765531111        23579999999999875       489999999543

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=99.64  E-value=2.9e-16  Score=141.05  Aligned_cols=97  Identities=35%  Similarity=0.451  Sum_probs=84.1

Q ss_pred             EeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCC
Q 007244          367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPN  443 (611)
Q Consensus       367 VN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~  443 (611)
                      ||+||.+|. ++|||+++|++++|++++++|++..   +.+++|++++|+       .+.+++++|||+|||.|..... 
T Consensus         1 Vn~~N~~~~-~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~-------~~~l~~~~Iih~v~P~~~~~~~-   71 (118)
T PF01661_consen    1 VNAANCFLS-MGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTP-------GGNLPCKYIIHAVGPTYNSPGE-   71 (118)
T ss_dssp             EEEEETTSS-BSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEE-------ETTSSSSEEEEEEEEETTTSTS-
T ss_pred             CcCCCCCCC-CCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeec-------CCCccccceEEEecceeccccc-
Confidence            899999999 8999999999999999999998763   669999999998       2346789999999999975422 


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          444 CLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       444 ~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                            ....+.|++||+++|+.+     .||+||+||.+
T Consensus        72 ------~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G  105 (118)
T PF01661_consen   72 ------KNSYEALESAYRNALQKAEENGIKSIAFPAIGTG  105 (118)
T ss_dssp             ------TTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSS
T ss_pred             ------cccHHHHHHHHHHHHHHHHHcCCcccccCcccCC
Confidence                  256899999999999986     49999999944

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>PRK06762 hypothetical protein; Provisional

Probab=99.64  E-value=5.8e-15  Score=140.84  Aligned_cols=147  Identities=14%  Similarity=0.116  Sum_probs=110.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC--------CcHHHHHHHHHHHHHCCCcEEEecCCCCH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTKVQCLTSASSALKKGKSVFLDRCNLER   90 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~--------~~~~~~~~~~~~~L~~Gk~VIID~tnl~~   90 (611)
                      ||.+|+|+|+|||||||+|+.|.+.++..+.+++.|.++....        .....+...++..+..|..||+|+++...
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~   80 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD   80 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence            6899999999999999999999999865577889888864211        12233445556668889999999987777


Q ss_pred             HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (611)
Q Consensus        91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev  169 (611)
                      ..|..+..+ ...+.++.+|+|++|.++|.+|+.+|....     ..+++.+++++..++.+..   ++.+++. +...+
T Consensus        81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-----~~~~~~l~~~~~~~~~~~~---~~~~~~~-~~~~~  151 (166)
T PRK06762         81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-----EFGEDDMRRWWNPHDTLGV---IGETIFT-DNLSL  151 (166)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-----cCCHHHHHHHHhhcCCcCC---CCeEEec-CCCCH
Confidence            777777777 777778899999999999999999997621     4678999999988876642   3444434 44555


Q ss_pred             HHHHH
Q 007244          170 QAALD  174 (611)
Q Consensus       170 d~av~  174 (611)
                      .+++.
T Consensus       152 ~~v~~  156 (166)
T PRK06762        152 KDIFD  156 (166)
T ss_pred             HHHHH
Confidence            55554

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.60  E-value=6.8e-15  Score=153.40  Aligned_cols=126  Identities=28%  Similarity=0.398  Sum_probs=103.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC---------c--H-----HHHHHHHHHHHHCCCcEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--K-----VQCLTSASSALKKGKSVF   82 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~---------~--~-----~~~~~~~~~~L~~Gk~VI   82 (611)
                      |+.+|+|+|+|||||||+|++|++.++ .+.+++.|.++.....         .  .     ......+..++..|..||
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vI   79 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVI   79 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            578999999999999999999999983 3678999888532110         0  0     112255667788899999


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P  151 (611)
                      ||++++...+|..+..+ +..++.+.+|+|++|.+++.+|+.+|..|      .+|.+++.+|+++++.+
T Consensus        80 id~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~  143 (300)
T PHA02530         80 ISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER------AVPEDVLRSMFKQMKEY  143 (300)
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC------CCCHHHHHHHHHHHHHh
Confidence            99999999999999998 88888888999999999999999999665      57899999988887644

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=99.59  E-value=2.1e-15  Score=147.03  Aligned_cols=106  Identities=26%  Similarity=0.327  Sum_probs=91.7

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~  421 (611)
                      +-.+.+|+||++.+.      +|+||      |. +|||+..+|+++|||++..||..+ ..|++|.+.+|.       +
T Consensus        32 ~~~i~lwr~d~~~l~------v~avv------l~-~g~~~~~ai~~aagp~l~~e~~~~-~~c~tG~ak~t~-------~   90 (200)
T KOG2633|consen   32 NGGISLWRGDGKTLE------VDAVV------LL-GGKGVDEAIHRAAGPELPLECAYL-HGCRTGAAKSTG-------G   90 (200)
T ss_pred             ccCeeEeeccccccc------ceeee------ec-cCcchhHHHHHhcCCcchHHHHhh-cCCCCCeeEecC-------C
Confidence            356889999999998      99999      66 899999999999999999999998 459999999998       2


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccC
Q 007244          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (611)
Q Consensus       422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~  476 (611)
                      ..|++++|||+|||.|...+.        +.+..|+.||+|||.+|     .+||||||+
T Consensus        91 ~~Lpak~vIHtvgP~~~~d~~--------~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~  142 (200)
T KOG2633|consen   91 YGLPAKRVIHTVGPRWKEDKL--------QECYFLHSCYRSCLDLAIEKLLSSIAFPKIS  142 (200)
T ss_pred             CCCceeEEEEecCchhhccch--------HHHHHHHHHHHHHHHHHHHhccceeeeeeee
Confidence            347889999999999976532        33347999999999986     479999999

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.58  E-value=1.2e-14  Score=142.08  Aligned_cols=132  Identities=22%  Similarity=0.273  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh---ccCCCC-cHHHH---------HHHHHHHHHCCCcEEEec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI---NKGKSG-TKVQC---------LTSASSALKKGKSVFLDR   85 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i---~~~~~~-~~~~~---------~~~~~~~L~~Gk~VIID~   85 (611)
                      ||+|+|+|||||||||+.|++.+.   ....+++.|..   ..++.. .+.+.         ...+..+++ +.-||+|.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvDd   81 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVDD   81 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEec
Confidence            799999999999999999998765   22334444332   222222 22211         133333443 56799999


Q ss_pred             CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEE
Q 007244           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (611)
Q Consensus        86 tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~  161 (611)
                      +|+...+|..+... +.......+|++.+|.++|++|+..|+.       ..|++++++++.+|++|...-.||.-.
T Consensus        82 tNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-------pip~Evl~qly~RfEePn~~~rWDspl  151 (261)
T COG4088          82 TNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-------PIPEEVLRQLYDRFEEPNPDRRWDSPL  151 (261)
T ss_pred             ccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-------CCCHHHHHHHHHhhcCCCCCccccCce
Confidence            99999999999999 8888888999999999999999988776       589999999999999999988888633

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.57  E-value=2.8e-14  Score=145.52  Aligned_cols=130  Identities=24%  Similarity=0.332  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC---CCc-----HHHHHHHHHHHHHCCCcEEEecCCCCH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---SGT-----KVQCLTSASSALKKGKSVFLDRCNLER   90 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~---~~~-----~~~~~~~~~~~L~~Gk~VIID~tnl~~   90 (611)
                      ||+|+|+|||||||+|++|++.+.   ..+.+++.|.++...   ...     +......+..++..|..||+|++++..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~   80 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN   80 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence            689999999999999999998763   446677877774321   111     112235677888899999999999999


Q ss_pred             HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCcc
Q 007244           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS  158 (611)
Q Consensus        91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd  158 (611)
                      ..|..+..+ +..+....+|++++|.++|.+|+..|..       ..+++++.++...+++|.....|+
T Consensus        81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------~~~~~~i~~l~~r~e~p~~~~~wd  142 (249)
T TIGR03574        81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------KIPNEVIKDMYEKFDEPGTKYSWD  142 (249)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-------CCCHHHHHHHHHhhCCCCCCCCcc
Confidence            999999888 8888888899999999999999998864       367889999999999998765544

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.57  E-value=2.8e-16  Score=181.53  Aligned_cols=121  Identities=20%  Similarity=0.122  Sum_probs=100.9

Q ss_pred             cCCeEEEEEE----cccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH---HHHHHHh------------
Q 007244          340 INPKKFFTFV----GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAER------------  400 (611)
Q Consensus       340 ~~~~~v~i~~----GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l---~~e~~~~------------  400 (611)
                      .++.++.+++    ||||.+.      +|+|||+||..|. +||||.+||+++||+.+   +++|+++            
T Consensus       472 ~~~~~~~~~~~~~~~dit~~~------~d~ivnaan~~ll-~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~r  544 (725)
T PRK13341        472 QEGERLAILRDRLWSDITWQR------HDRVLNLANRSLL-WALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLER  544 (725)
T ss_pred             hcccHHHHHHHHHhccccccc------cceeEEccCccch-hhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhC
Confidence            4578899999    9999997      9999999999999 89999999999999999   8888752            


Q ss_pred             -----------------------cCCCCCCCEEEec-----CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhh
Q 007244          401 -----------------------AKSLYPGNSVIVP-----LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKG  452 (611)
Q Consensus       401 -----------------------~~~~~~G~~v~T~-----l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~  452 (611)
                                             .|++++|++++|.     |-.-.+..++|.+++|||+|||.|....+          
T Consensus       545 p~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~----------  614 (725)
T PRK13341        545 PVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE----------  614 (725)
T ss_pred             ccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc----------
Confidence                                   4889999999991     10011124568999999999999977532          


Q ss_pred             HHHHHHHHHHHHHHH-----H----------HhhccccCC
Q 007244          453 CEILRKAYTSLFEGF-----L----------SIVRSQEKL  477 (611)
Q Consensus       453 ~~~L~~ay~~~L~~a-----~----------siafp~~~~  477 (611)
                      .+.|.+||+++|..|     .          |||||+|+-
T Consensus       615 ~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~ist  654 (725)
T PRK13341        615 DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWST  654 (725)
T ss_pred             cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCcc
Confidence            468999999999974     5          999999983

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.52  E-value=5.1e-14  Score=145.68  Aligned_cols=133  Identities=23%  Similarity=0.346  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc--cCCCC-------cHHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN--KGKSG-------TKVQCLTSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~--~~~~~-------~~~~~~~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      ||+|+|.|||||||+|++|.+.+.   ....+++.|.+.  ...+.       .+..+...+.+.|.....||+|+.|+.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi   82 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI   82 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence            899999999999999999987543   446677766664  11111       123455788899999999999999999


Q ss_pred             HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccE
Q 007244           90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (611)
Q Consensus        90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~  159 (611)
                      +.+|-++..+ +..+....+|++++|.+.|++|+.+|....     .++++++.+|..+||+|.....||.
T Consensus        83 Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-----~~~~e~i~~m~~RfE~P~~~nrWD~  148 (270)
T PF08433_consen   83 KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-----RYPEETIDDMIQRFEEPDPKNRWDS  148 (270)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHHHHHHHHH---TTSS-GGGS
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-----CCCHHHHHHHHHHhcCCCCCCCccC
Confidence            9999999999 999999999999999999999999998732     4899999999999999998767774

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.51  E-value=7.5e-14  Score=135.19  Aligned_cols=142  Identities=18%  Similarity=0.250  Sum_probs=109.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee--------------------cchh----ccCCCCcHHHHH------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC--------------------QDTI----NKGKSGTKVQCL------   68 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is--------------------~D~i----~~~~~~~~~~~~------   68 (611)
                      ++.|++|+||+|+||||+.++|.+..+ ....||                    .+.+    .++.+.+|.++.      
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            678999999999999999999999873 333344                    1222    244555554322      


Q ss_pred             --HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHH
Q 007244           69 --TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (611)
Q Consensus        69 --~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~  145 (611)
                        ..++..+..|++||+|.      +.++.+.+ +..+..+.++.++++.+++.+|+..|++       +..+.+-+||.
T Consensus        82 ~~~~ve~~~~~G~~vildI------d~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt-------ds~e~I~~Rl~  148 (191)
T COG0194          82 SREPVEQALAEGKDVILDI------DVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT-------DSEEVIARRLE  148 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEE------ehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC-------CCHHHHHHHHH
Confidence              77889999999999999      88888888 7777666677778888999999999988       67888889999


Q ss_pred             hhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244          146 QKKELPKLSEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      +...+......||+|++++   +++.+...+.
T Consensus       149 ~a~~Ei~~~~~fdyvivNd---d~e~a~~~l~  177 (191)
T COG0194         149 NAKKEISHADEFDYVIVND---DLEKALEELK  177 (191)
T ss_pred             HHHHHHHHHHhCCEEEECc---cHHHHHHHHH
Confidence            9887777777799999995   4445554433

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.50  E-value=5e-13  Score=125.28  Aligned_cols=126  Identities=21%  Similarity=0.217  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---------CCCc---HHH----HHHHHHHHH-HCCCcEEEe
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQ----CLTSASSAL-KKGKSVFLD   84 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---------~~~~---~~~----~~~~~~~~L-~~Gk~VIID   84 (611)
                      ||+|+|+|||||||+|+.+.+.++  +.+++.|.++..         ....   ...    ....+...+ ..|..+|+|
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid   78 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVA   78 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC--CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            589999999999999999999887  456888887642         1101   111    112223333 478899999


Q ss_pred             cCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCC
Q 007244           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG  156 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~Eg  156 (611)
                      .+++....|..+..+. ++..+.+|++++|.+++.+|+..|..+      ..+.+.+..+.+.|+.|...++
T Consensus        79 ~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~~~------~~~~~~~~~~~~~~~~p~~~~~  143 (150)
T cd02021          79 CSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARKGH------FMPADLLDSQFETLEPPGEDEE  143 (150)
T ss_pred             eccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC
Confidence            9998888887776553 466788999999999999999999764      3558889999999999997664

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.49  E-value=4.4e-13  Score=127.49  Aligned_cols=140  Identities=19%  Similarity=0.208  Sum_probs=101.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CC-CC-----cH-HHHHHHHHHHHHCCCcEEEecC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GK-SG-----TK-VQCLTSASSALKKGKSVFLDRC   86 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~-~~-----~~-~~~~~~~~~~L~~Gk~VIID~t   86 (611)
                      |+|+|+|||||||+|+.|.+.++  ...++.|.+..         +. ..     .+ ..+...+...+..|..+|||.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t   78 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCS   78 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            57999999999999999999988  45588888632         11 01     11 1233566677788888899999


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (611)
Q Consensus        87 nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~  166 (611)
                      ++.+..|..+   +..+..+.+++|++|.+++.+|+..|..+      ..+.+.+++++..++.|...|.  ++++++..
T Consensus        79 ~~~~~~r~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~e~--~~~~id~~  147 (163)
T TIGR01313        79 ALKRHYRDIL---REAEPNLHFIYLSGDKDVILERMKARKGH------FMKADMLESQFAALEEPLADET--DVLRVDID  147 (163)
T ss_pred             ccHHHHHHHH---HhcCCCEEEEEEeCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCCCCCCCC--ceEEEECC
Confidence            8877766655   45566778899999999999999999753      2456778888888888876663  35666655


Q ss_pred             hhHHHHHHH
Q 007244          167 NDVQAALDT  175 (611)
Q Consensus       167 ~evd~av~~  175 (611)
                      ...+++..+
T Consensus       148 ~~~~~~~~~  156 (163)
T TIGR01313       148 QPLEGVEED  156 (163)
T ss_pred             CCHHHHHHH
Confidence            555555443

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.6e-12  Score=122.01  Aligned_cols=133  Identities=20%  Similarity=0.236  Sum_probs=108.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc---------------cCCCCcHHH-HHHHHHHHHHCCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQ-CLTSASSALKKGK   79 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~---------------~~~~~~~~~-~~~~~~~~L~~Gk   79 (611)
                      -.+.+-+|+++|++||||||+++.|.++++..|  ++.|++.               ++.+..|-. +...++.++..|.
T Consensus         8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F--~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q   85 (191)
T KOG3354|consen    8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGLKF--IDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQ   85 (191)
T ss_pred             cCCCceeEEEEecCCCChhhHHHHHHHHhCCcc--cccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCC
Confidence            345567999999999999999999999999555  8888883               223445544 5577788888999


Q ss_pred             cEEEecCCCCHHHHHHHHHh-C-----CCC-CeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCC
Q 007244           80 SVFLDRCNLEREQRTDFVKL-G-----GPE-VDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~-----~~~-~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~  152 (611)
                      .||+-+..+.+..|.-++.- +     ... ..+++|++..+.+++..|+.+|..|      .+|.++++++.+.+|.|.
T Consensus        86 ~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH------FMp~~lleSQf~~LE~p~  159 (191)
T KOG3354|consen   86 GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH------FMPADLLESQFATLEAPD  159 (191)
T ss_pred             eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc------cCCHHHHHHHHHhccCCC
Confidence            99999988888777766653 2     222 4689999999999999999999998      799999999999999999


Q ss_pred             ccCC
Q 007244          153 LSEG  156 (611)
Q Consensus       153 ~~Eg  156 (611)
                      ..|.
T Consensus       160 ~~e~  163 (191)
T KOG3354|consen  160 ADEE  163 (191)
T ss_pred             CCcc
Confidence            8663

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.41  E-value=5.7e-12  Score=121.80  Aligned_cols=106  Identities=19%  Similarity=0.298  Sum_probs=80.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC----------------CC---------cHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK----------------SG---------TKVQCLTSASSA   74 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~----------------~~---------~~~~~~~~~~~~   74 (611)
                      ..+|+|+|+|||||||+|+.|.+.++..+.+++.|.++...                ..         ........+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~   81 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM   81 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999987777788888663110                00         011233667889


Q ss_pred             HHCCCcEEEecCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           75 LKKGKSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        75 L~~Gk~VIID~tnl-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +..|.+||+|.++. ....|..+..+  .+..+++|++.+|.++|.+|+.+|..
T Consensus        82 l~~G~~VIvD~~~~~~~~~r~~~~~~--~~~~~~~v~l~~~~~~l~~R~~~R~~  133 (175)
T cd00227          82 ARAGANVIADDVFLGRAALQDCWRSF--VGLDVLWVGVRCPGEVAEGRETARGD  133 (175)
T ss_pred             HhCCCcEEEeeeccCCHHHHHHHHHh--cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence            99999999999887 55556555444  33567899999999999999999975

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=3.3e-12  Score=119.32  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=104.1

Q ss_pred             EcCCCCcHHHHHHHHHHHcCCCeEEeecchhc---------------cCCCCcHHHH-HHHHHHHHHCCCcEEEecCCCC
Q 007244           26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQC-LTSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        26 vG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~---------------~~~~~~~~~~-~~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      +|.+||||||++..|+++++..|  |+.|++.               ++.+..|-+. -..+......|+.+||-+..+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~f--idGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALK   78 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKF--IDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALK   78 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCce--ecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence            59999999999999999999555  8888873               1233345443 3455555566777888888888


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (611)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev  169 (611)
                      +.+|..+   +.....+.+|||+.+.+++.+|+..|..|      .+|..++.++...+|+|...|   +++.++.+..+
T Consensus        79 r~YRD~L---R~~~~~~~Fv~L~g~~~~i~~Rm~~R~gH------FM~~~ll~SQfa~LE~P~~de---~vi~idi~~~~  146 (161)
T COG3265          79 RSYRDLL---REANPGLRFVYLDGDFDLILERMKARKGH------FMPASLLDSQFATLEEPGADE---DVLTIDIDQPP  146 (161)
T ss_pred             HHHHHHH---hccCCCeEEEEecCCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCC---CEEEeeCCCCH
Confidence            7777776   44444589999999999999999999998      799999999999999999877   45566555555


Q ss_pred             HHHHH
Q 007244          170 QAALD  174 (611)
Q Consensus       170 d~av~  174 (611)
                      +.++.
T Consensus       147 e~vv~  151 (161)
T COG3265         147 EEVVA  151 (161)
T ss_pred             HHHHH
Confidence            55544

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.39  E-value=7.1e-12  Score=121.16  Aligned_cols=105  Identities=23%  Similarity=0.381  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--GKS   80 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~--Gk~   80 (611)
                      +|+|+|+|||||||+|+.|++.++  +.+|+. |.++.                  +...+.+.+...+.+++..  +..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~   78 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKK   78 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCc
Confidence            589999999999999999999998  566876 34431                  1122222233455555543  567


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      ||||+++.+..++..|..+ ......-.+|+|++|.+++.+|+.+|...
T Consensus        79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~  127 (183)
T TIGR01359        79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS  127 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc
Confidence            9999999999999988776 43222234899999999999999999763

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14527 adenylate kinase; Provisional

Probab=99.38  E-value=5.8e-12  Score=123.44  Aligned_cols=154  Identities=21%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK-   77 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~-   77 (611)
                      .+|.+|+|+|+|||||||+|+.|++.++  +.+++.+++ +.                  +...+.+.+...+...+.. 
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999998  445765444 21                  2222333345666666665 


Q ss_pred             -CCcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc---CC
Q 007244           78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LP  151 (611)
Q Consensus        78 -Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e---~P  151 (611)
                       +..+|+|+++.+..++..+..+ +..+..+ .+++|++|.+++.+|+.+|....+ +.++..+.+.+|+ +.|.   .|
T Consensus        82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~dd~~~~~~~R~-~~y~~~~~~  159 (191)
T PRK14527         82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEG-RSDDNEETVRRRQ-QVYREQTQP  159 (191)
T ss_pred             CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCC-CCCCCHHHHHHHH-HHHHHHhHH
Confidence             4569999988888888888777 6655554 478999999999999999975432 3444444444444 3332   12


Q ss_pred             Cc--cCCccEEEEcCChhhHHHHHHH
Q 007244          152 KL--SEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       152 ~~--~EgFd~V~vv~~~~evd~av~~  175 (611)
                      ..  +..-..++.++....++++...
T Consensus       160 v~~~y~~~~~~~~id~~~~~~~v~~~  185 (191)
T PRK14527        160 LVDYYEARGHLKRVDGLGTPDEVYAR  185 (191)
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHH
Confidence            11  1111235566666666655443

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=99.37  E-value=3.2e-12  Score=119.30  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=88.9

Q ss_pred             EEEEEccccee-cccCcccccEEEeCCCCCCcCCCChhhHHHHHh--hcH-HHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244          345 FFTFVGDITRL-YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSA--AGP-ALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (611)
Q Consensus       345 v~i~~GDIt~~-~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~a--AG~-~l~~e~~~~~~~~~~G~~v~T~l~~~~~~  420 (611)
                      |++++|||++. .      +|+|||++|..+. +|+|++.+|.++  +++ .+++.|++.  .+..|++++++.      
T Consensus         2 i~~v~GDi~~~~~------~d~Iv~~~N~~~~-mG~Gia~~i~~~~p~~~~~~~~~~~~~--~~~~G~~~~~~~------   66 (140)
T cd02901           2 ITYVKGDLLHAPE------AAALAHAVNCDGV-MGKGIALQFKEKFPEFVEEYRAACKKK--ELLLGGVAVLER------   66 (140)
T ss_pred             eEEEcCccccCCC------CCEEEEEEcCCCc-cChHHHHHHHHHCcHHHHHHHHHHHhc--CCCCCcEEEEec------
Confidence            77899999999 6      9999999999999 999999999997  444 777777764  356788877662      


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS  478 (611)
Q Consensus       421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~  478 (611)
                      .+.+++++|+|+++|.+....+         ..+.|++|++++++.+.     |||||.||.+
T Consensus        67 ~~~~~~~~I~~~~t~~~~~~~~---------~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G  120 (140)
T cd02901          67 GSSLVSRYIYNLPTKVHYGPKS---------RYEAIEKSLRELRAHARDNGIKSVAMPRIGCG  120 (140)
T ss_pred             CCCCCceEEEEeeccCCCCCCC---------cHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCc
Confidence            1234569999999998765322         25799999999999874     9999999943

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.35  E-value=2.7e-11  Score=117.01  Aligned_cols=155  Identities=18%  Similarity=0.336  Sum_probs=111.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c-------------------cCCCCcHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-------------------KGKSGTKVQCLTSASSAL   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~-------------------~~~~~~~~~~~~~~~~~L   75 (611)
                      ...+|.+|++.|.|||||-|.|.++++.++  |.|++..++ |                   +|...+.+.+..++.++|
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am   81 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAM   81 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHH
Confidence            457789999999999999999999999999  899996444 2                   233334445557777777


Q ss_pred             HCCCc---EEEecCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh--c
Q 007244           76 KKGKS---VFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK--K  148 (611)
Q Consensus        76 ~~Gk~---VIID~tnl~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~--~  148 (611)
                      .....   ++||+.+.+.++...|-+. . ...   .++||||+.++|++|+..|+.... +.++..+.+-.|+...  .
T Consensus        82 ~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~---fvl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~  157 (195)
T KOG3079|consen   82 RSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPD---FVLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKS  157 (195)
T ss_pred             HhcCCCCeEEecCCCCChHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHc
Confidence            65433   9999999999999999776 4 333   488999999999999999988533 5555555555554432  2


Q ss_pred             cCCCc--cCCccEEEEcCChhhHHHHHHHh
Q 007244          149 ELPKL--SEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       149 e~P~~--~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      ..|-.  .|.-..+..++.+.+++++-...
T Consensus       158 t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v  187 (195)
T KOG3079|consen  158 TLPVIEYYEKKGKLLKINAERSVDDVFEEV  187 (195)
T ss_pred             chHHHHHHHccCcEEEecCCCCHHHHHHHH
Confidence            23432  44444677777777777665443

>PRK14531 adenylate kinase; Provisional

Probab=99.34  E-value=1.2e-11  Score=120.54  Aligned_cols=149  Identities=19%  Similarity=0.261  Sum_probs=94.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHH--CC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALK--KG   78 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~--~G   78 (611)
                      +.-|+|+|+|||||||+++.|++.++  +.+|+. |.++.                  |...+..-+...+...|.  .+
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~   79 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHG--LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNS   79 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccC
Confidence            44689999999999999999999998  445765 44432                  122222223344444554  35


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh--ccCCCc-
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK--KELPKL-  153 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~--~e~P~~-  153 (611)
                      ..+|||+++.+..++..+..+ ...+..+ .+++|++|.+++.+|+..|.+.     ++.++.+..|+...  ...|.. 
T Consensus        80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~-----dD~~e~i~~Rl~~y~~~~~pv~~  154 (183)
T PRK14531         80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA-----DDNEAVIRNRLEVYREKTAPLID  154 (183)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999888776 5444433 4889999999999999999652     24444444444322  112221 


Q ss_pred             -cCCccEEEEcCChhhHHHHHHH
Q 007244          154 -SEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       154 -~EgFd~V~vv~~~~evd~av~~  175 (611)
                       ++.-..++.++....++++...
T Consensus       155 ~y~~~~~~~~id~~~~~~~v~~~  177 (183)
T PRK14531        155 HYRQRGLLQSVEAQGSIEAITER  177 (183)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHH
Confidence             1111235566655566655443

>PRK14532 adenylate kinase; Provisional

Probab=99.34  E-value=2e-11  Score=118.88  Aligned_cols=148  Identities=16%  Similarity=0.246  Sum_probs=95.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHH---CCCc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---KGKS   80 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~---~Gk~   80 (611)
                      |+|+|+|||||||+|+.|++.++  +.+|+.|++ ++                  +.......+...+.+.+.   .+..
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g   80 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG   80 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            88999999999999999999998  666887443 32                  112222223344444443   3567


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC-----CCc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL-----PKL  153 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~-----P~~  153 (611)
                      +|+|+++.+..++..+..+ ...+..+ .+|+|++|.+++.+|+..|.... .+.++.++...+|+...+..     +.+
T Consensus        81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~-~r~dd~~~~~~~Rl~~~~~~~~~i~~~y  159 (188)
T PRK14532         81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ-GRPDDNPEVFVTRLDAYNAQTAPLLPYY  159 (188)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988776 5555444 68999999999999999985321 13334555555555443321     112


Q ss_pred             cCCccEEEEcCChhhHHHHHH
Q 007244          154 SEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       154 ~EgFd~V~vv~~~~evd~av~  174 (611)
                      .+. ..++.++....++++..
T Consensus       160 ~~~-~~~~~id~~~~~eev~~  179 (188)
T PRK14532        160 AGQ-GKLTEVDGMGSIEAVAA  179 (188)
T ss_pred             Hhc-CCEEEEECCCCHHHHHH
Confidence            221 23555555455555444

>COG0645 Predicted kinase [General function prediction only]

Probab=99.33  E-value=2.9e-11  Score=115.66  Aligned_cols=128  Identities=25%  Similarity=0.229  Sum_probs=104.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------------cHHHHHHHHHHHHHCCCc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------------TKVQCLTSASSALKKGKS   80 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------------~~~~~~~~~~~~L~~Gk~   80 (611)
                      +.++++.|.|||||||+|+.+.+.++  ..+|..|.++..-++                   .+...+..+...|..|.+
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~lg--A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~   78 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELLG--AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHS   78 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhcC--ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            36899999999999999999999998  667888988643222                   123455788899999999


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL  153 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~  153 (611)
                      ||+|+++..+.+|..++.+ +..+..+..|.++.|.+++..|+..|.....    +--..+++.+...++....
T Consensus        79 VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~s----DA~~~il~~q~~~~~~~~~  148 (170)
T COG0645          79 VVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDAS----DATFDILRVQLAEDEPWTE  148 (170)
T ss_pred             EEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcc----cchHHHHHHHHhhhCCccc
Confidence            9999999999999999999 9999999999999999999999999987321    3345666777777655543

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=99.33  E-value=1.4e-15  Score=159.56  Aligned_cols=416  Identities=23%  Similarity=0.182  Sum_probs=263.3

Q ss_pred             ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEc
Q 007244           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv  163 (611)
                      |.++..+. +..++....+...++..+.+.+...+-.++..|..|.+.....--.....-|+..+..+...+++..+.+.
T Consensus         3 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~q~~ds~~~~~~v~~~~~~~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD   81 (422)
T KOG2134|consen    3 DRERLLRE-DSEFISYGLHEFEVHKKVTPEPAQSKDSDLVGTLVHLPQKIGGRWSSTENGMLQIFTLPKVNGGSKIIMFD   81 (422)
T ss_pred             cccccccc-chhHHhcCCcccceeecccCCccccccCcccccccccccccCCCcccccCcceEEeeccccCCCcceEEEe
Confidence            34444444 55555554555667777888888999999988775544333333445556677778888888998888888


Q ss_pred             CChhhHHHHHHHhccCCCCcccCCCCCCCCCCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 007244          164 QNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE  243 (611)
Q Consensus       164 ~~~~evd~av~~~~~lgp~dII~~gc~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (611)
                      -+...++.....+...++-|-..-+|+.....+.+.|+||+.|+++.+.+.-.+....  .+ .+          .+.  
T Consensus        82 ~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~--~~-f~----------~Ki--  146 (422)
T KOG2134|consen   82 YDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLEL--EE-FK----------KKI--  146 (422)
T ss_pred             cCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchH--HH-HH----------HHH--
Confidence            7777777766666666665543357888888999999999999988887663221100  00 00          000  


Q ss_pred             eeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEE-EeecC
Q 007244          244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLV-LVDLT  322 (611)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV-~vd~s  322 (611)
                                ..+-.++++.....    .+..--..++|.+|.-.|.+-...++..|.+.+..|+-+.-.-... ..+..
T Consensus       147 ----------~~i~anl~vPi~~~----~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kk  212 (422)
T KOG2134|consen  147 ----------KAIVANLGVPIQLL----AAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALRRKK  212 (422)
T ss_pred             ----------HHHHHhcCCceEEe----eeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccccccCcc
Confidence                      00011111111100    0111125566666665565555566666666666665553222222 22233


Q ss_pred             cchhhhhhhHHHhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCCh--hhHHHHHhhcHHHHHHHHHh
Q 007244          323 QGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGG--VNAAIFSAAGPALEVATAER  400 (611)
Q Consensus       323 ~~s~~Ls~V~s~~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggG--Va~aI~~aAG~~l~~e~~~~  400 (611)
                      ..+.....+...+-..-.....++...++++ +.+-+..-+.+|++++|+.|.+.++|  |..+++.++|+....+.+=.
T Consensus       213 d~S~~D~~FAaN~gvkF~tPeefF~g~~~~~-~~~~~fdp~n~i~~~t~~~~~~~~~~eiV~~vgfp~sGks~f~a~~~~  291 (422)
T KOG2134|consen  213 DHSSADRKFAANAGVKFKTPEEFFLGVGVVT-WNSPGFDPKNVISRATSLCLKLDGHGEIVVAVGFPGSGKSTFAAKRVV  291 (422)
T ss_pred             cccHHHHHHHHhcCCccCCHHHHhccccccc-cCCCCCCchhHHhhhcchhcccCCCCcEEEEEecCCCCcchhhhhhcc
Confidence            3333332222222122223456777888888 65556666899999999999988888  99999999999988876655


Q ss_pred             cCCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 007244          401 AKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKG  480 (611)
Q Consensus       401 ~~~~~~G~~v~T~l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~~~~  480 (611)
                      .+...++++.+.+.|++|++.+..+.++++|||+   ++.+|+-..++|-..+..++.+|-+||.+..|...-+-...  
T Consensus       292 ~~~y~~vn~d~lg~~~~C~~~~~e~l~~~~sVvi---dnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~--  366 (422)
T KOG2134|consen  292 PNGYKIVNADTLGTPQNCLLANAEALKHGKSVVI---DNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNR--  366 (422)
T ss_pred             cCceeEeecccCCCchhhHHHHHHHhhcccEEee---CCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhcccc--
Confidence            5566677777777888999999999999999998   34455544444444567888888888888777665322211  


Q ss_pred             CCcCcccCCCccCCCCcCccCCcccCCCccccCCCccchhccccccCCcccccccccccccccccccccCcccccch
Q 007244          481 CNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAW  557 (611)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (611)
                              ..++||       .+-+.+.+|    ...++|+|++|++.+.+++.+...+-+   +....+..+.|.|
T Consensus       367 --------fR~~~~-------~~~~~~~dm----~~~~~k~kf~~ptl~egft~i~ev~f~---~~~~~~ekl~k~~  421 (422)
T KOG2134|consen  367 --------FRELSD-------SVKDSGSDM----VFNSEKSKFQKPTLDEGFTNILEVPFK---DTRESGEKLYKMW  421 (422)
T ss_pred             --------chhhcc-------chhcccccc----eeehhhccccCchHhhhhhhhhccchh---hhhhhhhhHhhcc
Confidence                    112222       112223344    678999999999999999988887654   3555666666666

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=99.30  E-value=1.7e-12  Score=126.97  Aligned_cols=109  Identities=11%  Similarity=0.118  Sum_probs=84.7

Q ss_pred             CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  272 (611)
                      +.....++.|++-.+++.+. .....+++     .  .|.+.++.|.++.|.+.|.|..  ....+.+...-.+||..|+
T Consensus        54 AI~~aaG~~l~~ec~~~~~~~g~~~~G~~-----~--iT~a~~Lp~k~VIHtVgP~~~~--~~~~~~L~~~~~~~L~~A~  124 (186)
T cd02904          54 ALEKKGGKEFVEAVKELRKSNGPLEIAGA-----A--VSQAHGLPAKFVIHCHSPQWGS--DKCEEQLEKTVKNCLAAAE  124 (186)
T ss_pred             HHHHHcCHHHHHHHHHHHHhcCCCCCCCE-----E--EccCCCCCCCEEEEeCCCCCCC--CchHHHHHHHHHHHHHHHH
Confidence            55666788899887766432 11111222     1  3667889999999999999964  2223444556678999999


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~  311 (611)
                      +++++|||||+||||+||||.++||+|++++|.+|+.++
T Consensus       125 e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~  163 (186)
T cd02904         125 DKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST  163 (186)
T ss_pred             HcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999885

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.27  E-value=2.5e-11  Score=119.09  Aligned_cols=135  Identities=13%  Similarity=0.119  Sum_probs=90.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE--------------------eecchh----ccCCCCcHHH-------
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTI----NKGKSGTKVQ-------   66 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~--------------------Is~D~i----~~~~~~~~~~-------   66 (611)
                      ..|.+|+|+|||||||||++++|.+.++..+..                    ++.+.+    ..+.+.+|..       
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            468899999999999999999999876422211                    112221    1223332211       


Q ss_pred             -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                       -...+...+..|+.+|+|.      +++.+..+ +..+..+.+||+.+ +.+++.+|+.+|..       ...+++-.|
T Consensus        82 t~~~~i~~~~~~g~~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~-------~s~e~i~~R  148 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGT-------DSEESIEKR  148 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence             1155788899999999998      67777777 55554434566655 67999999999976       344566666


Q ss_pred             HHhhccCCCccCCccEEEEcCC
Q 007244          144 MLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus       144 m~~~~e~P~~~EgFd~V~vv~~  165 (611)
                      +..+..+-.....||.|+.+++
T Consensus       149 l~~~~~e~~~~~~~D~vI~N~d  170 (186)
T PRK14737        149 IENGIIELDEANEFDYKIINDD  170 (186)
T ss_pred             HHHHHHHHhhhccCCEEEECcC
Confidence            7665433334566888888864

>PRK04143 hypothetical protein; Provisional

Probab=99.25  E-value=3.5e-12  Score=131.05  Aligned_cols=128  Identities=12%  Similarity=0.071  Sum_probs=92.0

Q ss_pred             CCCCCCCCCchhhhhhHHHHHHhhcCC---CCCCCCCCCCCCCCCCcccccccccccccceeeccccccc--ccccCCCC
Q 007244          187 HGSFGQKNPDAKIQLGIMKFLKKVDAP---SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTEN  261 (611)
Q Consensus       187 ~gc~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  261 (611)
                      |||-.. .....+++.|..-.+++-..   .-.++...        .|.+.++.|.++-|.|-|.|..+.  ......+.
T Consensus       116 ~ggId~-aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~--------iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~  186 (264)
T PRK04143        116 HDCIDN-AIHTFAGVQLRLDCAEIMTEQGRKEATGQAK--------ITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLA  186 (264)
T ss_pred             CCcHHH-HHHHHhChHHHHHHHHHHHHcCCCCCCceEE--------EecCCCCCCCEEEEECCCcccCCCCCcchHHHHH
Confidence            455443 45556677777765554221   11121222        477889999999999999987631  12223444


Q ss_pred             cchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEEEEeecCc
Q 007244          262 PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLVDLTQ  323 (611)
Q Consensus       262 ~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~-i~iV~vd~s~  323 (611)
                      ..-.+|+..|.+++++|||||+||||+||||.++||.|++++|++|+.+++. .+++++.+..
T Consensus       187 ~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~vf~~  249 (264)
T PRK04143        187 SCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFNVFTD  249 (264)
T ss_pred             HHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCH
Confidence            4666889999999999999999999999999999999999999999998765 5666654443

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.25  E-value=7.5e-11  Score=114.71  Aligned_cols=104  Identities=24%  Similarity=0.327  Sum_probs=78.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GKS   80 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk~   80 (611)
                      |+|+|+|||||||+|+.|++.++  +.+++.|++ +.                  +.......+...+...|..   +..
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~   79 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG   79 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence            79999999999999999999988  556776554 21                  1122222334566666664   578


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      +|+|+++.+..++..+..+ ........+|+|++|.+++.+|+.+|...
T Consensus        80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~  128 (194)
T cd01428          80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC  128 (194)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence            9999999888888888777 54445556899999999999999999754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.25  E-value=7.3e-11  Score=125.71  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             HHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244           73 SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (611)
Q Consensus        73 ~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P  151 (611)
                      ..+.++..+|+|++|+.+.+|..+..+ +.++..+.+||+++|.++|++|+.+|..       .+++++++.|..++|.|
T Consensus       122 ~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~~-------~v~devie~m~~r~E~P  194 (340)
T TIGR03575       122 PAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRPV-------PLPDETIQLMGRKIEKP  194 (340)
T ss_pred             HHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCCC-------CCCHHHHHHHHHHhcCC
Confidence            344556679999999999999999999 8888889999999999999999999964       68999999999999999


Q ss_pred             Cc-cCCccE
Q 007244          152 KL-SEGFSR  159 (611)
Q Consensus       152 ~~-~EgFd~  159 (611)
                      .. ...|+.
T Consensus       195 ~~~~nrWd~  203 (340)
T TIGR03575       195 NPEKNAWEH  203 (340)
T ss_pred             CCCCCCCCC
Confidence            97 677775

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR01351 adk adenylate kinases

Probab=99.24  E-value=1.1e-10  Score=116.13  Aligned_cols=101  Identities=19%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC----CC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK----GK   79 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~----Gk   79 (611)
                      |+|+|+|||||||+|+.|++.++  +.+|+.+++ +.                  +...+.+.+...+...+..    +.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~   79 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG--LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN   79 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence            78999999999999999999998  555776433 21                  2233333445666777765    56


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .||||+.+.+..++..+... ..  ....+|+|++|.+++.+|+..|..
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~  126 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRI  126 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCc
Confidence            89999988888888877666 32  223589999999999999999964

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.22  E-value=1.9e-10  Score=114.95  Aligned_cols=104  Identities=16%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      .|++.|+|||||||+|+.|++.++  +.+++.+++ +.                  +...+.......+.+.+..   +.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~   79 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKN   79 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccC
Confidence            389999999999999999999998  566775333 21                  1222223344556666654   34


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+|||+++.+..+...+.+. ...+..+ .+|+|++|.+++.+|+..|..
T Consensus        80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (215)
T PRK00279         80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRI  129 (215)
T ss_pred             CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence            79999998888888877665 4444433 689999999999999999974

>PLN02674 adenylate kinase

Probab=99.22  E-value=1.7e-10  Score=117.80  Aligned_cols=107  Identities=19%  Similarity=0.254  Sum_probs=80.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---   77 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---   77 (611)
                      +..|+|+|+|||||||+|+.|++.++  +.+|+.+++ +                  .|...+.+-+...+.++|..   
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            35588999999999999999999998  666875444 2                  23333444444666777754   


Q ss_pred             CCcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 007244           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      +..+|+|+++.+..+...+..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~  161 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIH  161 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence            3569999999999999888766 4444433 5889999999999999999654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.21  E-value=3.7e-10  Score=109.92  Aligned_cols=136  Identities=21%  Similarity=0.231  Sum_probs=94.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------C------CCCcHHHHH-HHHHHHHHCCC-cEE
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------G------KSGTKVQCL-TSASSALKKGK-SVF   82 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~------~~~~~~~~~-~~~~~~L~~Gk-~VI   82 (611)
                      ..+++|+|++||||||+++.+...++.  .+++.|.+..         +      ....+.... ..+...+..+. .+|
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~--~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i   80 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSA--KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFI   80 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC--EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEE
Confidence            358999999999999999999998774  4577776421         1      111122222 22222233333 345


Q ss_pred             EecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEE
Q 007244           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITL  162 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~v  162 (611)
                      + ++++....|..+   +..+..+.+|+|++|.+++.+|+.+|..|      ..+.+++.++...+++|...|.  .++.
T Consensus        81 v-~s~~~~~~R~~~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~~~~~vl~~Q~~~~e~~~~~e~--~~~~  148 (176)
T PRK09825         81 V-CSSLKKQYRDIL---RKSSPNVHFLWLDGDYETILARMQRRAGH------FMPPDLLQSQFDALERPCADEH--DIAR  148 (176)
T ss_pred             E-EEecCHHHHHHH---HhhCCCEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHcCCCCCCcC--CeEE
Confidence            5 878887777766   55566789999999999999999999864      4688999999999998877664  2555


Q ss_pred             cCChhhH
Q 007244          163 CQNENDV  169 (611)
Q Consensus       163 v~~~~ev  169 (611)
                      ++....+
T Consensus       149 ~d~~~~~  155 (176)
T PRK09825        149 IDVNHDI  155 (176)
T ss_pred             EECCCCH
Confidence            5544443

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.21  E-value=6.5e-11  Score=116.92  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=79.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccCCCCc---------------HH----HHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGT---------------KV----QCLTSASSAL   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~~~~~---------------~~----~~~~~~~~~L   75 (611)
                      ....|.+++|.|+|||||||++..+...+ ...+++|+.|.++......               ..    .....+..++
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~   90 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI   90 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999987 5567899999996432110               00    1125567788


Q ss_pred             HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        76 ~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      ..+.++|+|+|.........+++. +..|+.+.++++.+|.++.+.|...|...
T Consensus        91 ~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~  144 (199)
T PF06414_consen   91 ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEE  144 (199)
T ss_dssp             HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHH
T ss_pred             HcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHc
Confidence            899999999998887777767777 88999999999999999999999999653

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK14530 adenylate kinase; Provisional

Probab=99.19  E-value=4.2e-10  Score=112.36  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-ccC----------------------CCCcHHHHHHHHHHHHHCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKG----------------------KSGTKVQCLTSASSALKKG   78 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~~----------------------~~~~~~~~~~~~~~~L~~G   78 (611)
                      .|+|+|+|||||||+|+.|++.++  +.+|+.+.+ +..                      ...+.+.....+...+...
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~   82 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA   82 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence            588999999999999999999998  555665444 211                      1111122334555666667


Q ss_pred             CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           79 KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      ..+|+|+.+.+..++..+..+...   -.+|+|++|.+++.+|+..|...
T Consensus        83 ~~~IldG~pr~~~q~~~l~~~~~~---d~vI~Ld~~~~~l~~Rl~~R~~~  129 (215)
T PRK14530         83 DGFVLDGYPRNLEQAEYLESITDL---DVVLYLDVSEEELVDRLTGRRVC  129 (215)
T ss_pred             CCEEEcCCCCCHHHHHHHHHhcCC---CEEEEEeCCHHHHHHHHhCCCcC
Confidence            789999988887777766444222   23899999999999999999653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.18  E-value=5.6e-10  Score=107.89  Aligned_cols=124  Identities=20%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHH----HHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTS----ASSALK   76 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~----~~~~L~   76 (611)
                      ..+|+|+|+|||||||+|+.+++.++  +.+++.+++ +.                  +...+...+...    +...+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG   80 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence            45899999999999999999999988  455765433 21                  112222222222    333345


Q ss_pred             CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           77 KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        77 ~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      .+..||+|+.+.+..+...+...  ....-.+|+|++|.+++.+|+.+|.... .+.++.++.+.+|+...+
T Consensus        81 ~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~~~~~~~Rl~~R~~~~-~r~d~~~~~~~~r~~~~~  149 (188)
T TIGR01360        81 TSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSEDTMVKRLLKRAETS-GRVDDNEKTIKKRLETYY  149 (188)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcccccC-CCCCCCHHHHHHHHHHHH
Confidence            67889999987766555544322  2223458999999999999999997522 133344555555655433

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PLN02200 adenylate kinase family protein

Probab=99.18  E-value=3.5e-10  Score=114.93  Aligned_cols=106  Identities=20%  Similarity=0.411  Sum_probs=76.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK-   77 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~-   77 (611)
                      ..|.+|+|+|+|||||||+|+.|++.++  +.+|+. |.++.                  +...+.+.+...+.+.+.. 
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g--~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~  118 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFG--FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS  118 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC--CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            3578999999999999999999999998  566876 44332                  1112223333444555543 


Q ss_pred             -CCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        78 -Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       +..+|||+.+.+..++..+..+ ...  .-.+|+|++|.+++.+|+.+|..
T Consensus       119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~--pd~vi~Ld~~~e~~~~Rl~~R~~  168 (234)
T PLN02200        119 DNNKFLIDGFPRTEENRIAFERIIGAE--PNVVLFFDCPEEEMVKRVLNRNQ  168 (234)
T ss_pred             CCCeEEecCCcccHHHHHHHHHHhccC--CCEEEEEECCHHHHHHHHHcCcC
Confidence             3569999999888888877665 322  22488999999999999999864

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.18  E-value=3.6e-10  Score=108.48  Aligned_cols=135  Identities=18%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             EcCCCCcHHHHHHHHHHHcCCCeEEeecchhc------c---CCCC------cHHHHH-HHHHHHHHCCCcEEEecCCCC
Q 007244           26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN------K---GKSG------TKVQCL-TSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        26 vG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~------~---~~~~------~~~~~~-~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      +|+|||||||+++.++..++  ...++.|.+.      .   +...      .+...+ ..+...+..+...||.++++.
T Consensus         1 ~G~sGsGKSTla~~la~~l~--~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~~~   78 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALK   78 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC--CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEecch
Confidence            59999999999999999988  4557777642      1   1111      121222 222233334444334488887


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (611)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev  169 (611)
                      +..|..+   +..+..+.+|++++|.++|.+|+..|..+      ....+++..+...+++|...|.  .++.++....+
T Consensus        79 ~~~r~~~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~a~~~vl~~Q~~~~ep~~~~e~--~~~~id~~~~~  147 (163)
T PRK11545         79 KHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET--DVLVVDIDQPL  147 (163)
T ss_pred             HHHHHHH---HccCCCEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHcCCCCCCCC--CEEEEeCCCCH
Confidence            7777555   45667789999999999999999999864      1367788999988998876663  44555544444


Q ss_pred             HHHH
Q 007244          170 QAAL  173 (611)
Q Consensus       170 d~av  173 (611)
                      ++++
T Consensus       148 ~~~~  151 (163)
T PRK11545        148 EGVV  151 (163)
T ss_pred             HHHH
Confidence            4433

>PRK14528 adenylate kinase; Provisional

Probab=99.17  E-value=4.8e-10  Score=109.87  Aligned_cols=149  Identities=19%  Similarity=0.267  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      .|++.|+|||||||+|+.+++.++.  .+++.+++ +.                  +...+.......+.+.+..   ..
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~--~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~   80 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSI--PQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN   80 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC--CeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccC
Confidence            4889999999999999999999984  45665555 21                  1111222223455555544   34


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc--cCCCc--
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--ELPKL--  153 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~--e~P~~--  153 (611)
                      .+|||+.+.+..+...+..+ ...+. .-.+|+|++|.+++.+|+..|....+ +.++.++.+.+|+....  ..|..  
T Consensus        81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-r~dd~~e~i~~Rl~~y~~~~~pv~~~  159 (186)
T PRK14528         81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-RADDNEATIKNRLDNYNKKTLPLLDF  159 (186)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-CCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence            59999988888888877766 43332 33688999999999999999976433 44566676666664332  22322  


Q ss_pred             cCCccEEEEcCChhhHHHHH
Q 007244          154 SEGFSRITLCQNENDVQAAL  173 (611)
Q Consensus       154 ~EgFd~V~vv~~~~evd~av  173 (611)
                      ++.-..++.++....++++.
T Consensus       160 y~~~~~~~~i~~~~~~~~v~  179 (186)
T PRK14528        160 YAAQKKLSQVNGVGSLEEVT  179 (186)
T ss_pred             HHhCCCEEEEECCCCHHHHH
Confidence            11112355555555555443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.16  E-value=6.2e-10  Score=108.73  Aligned_cols=140  Identities=15%  Similarity=0.173  Sum_probs=83.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc----------------------cCCCC-cHHH------HHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN----------------------KGKSG-TKVQ------CLT   69 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~----------------------~~~~~-~~~~------~~~   69 (611)
                      |..+++|+||+||||||+++.|+...+..+.......-+                      .+.+. .|..      ...
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~   80 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI   80 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence            356899999999999999999988765433222111000                      01110 1100      002


Q ss_pred             HHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        70 ~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      .+.+.+..|..||++++      +..+..+ +..+..+.+|++++|.+++.+|+..|.+       ..++++..|+.+..
T Consensus        81 ~~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~-------~~~~~i~~rl~r~~  147 (186)
T PRK10078         81 EIDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR-------ENASEINARLARAA  147 (186)
T ss_pred             HHHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC-------CCHHHHHHHHHHhh
Confidence            46677889999999884      4433334 3344566788999999999999998864       23455555553321


Q ss_pred             cCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          149 ELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       149 e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                         . .+.++.+++. +...+++++..+
T Consensus       148 ---~-~~~ad~~vi~-~~~s~ee~~~~i  170 (186)
T PRK10078        148 ---R-YQPQDCHTLN-NDGSLRQSVDTL  170 (186)
T ss_pred             ---h-hccCCEEEEe-CCCCHHHHHHHH
Confidence               1 2235545555 334455555443

>PRK13808 adenylate kinase; Provisional

Probab=99.16  E-value=5.3e-10  Score=118.64  Aligned_cols=151  Identities=13%  Similarity=0.205  Sum_probs=94.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch-hcc------------------CCCCcHHHHHHHHHHHHHCC---Cc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-INK------------------GKSGTKVQCLTSASSALKKG---KS   80 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~-i~~------------------~~~~~~~~~~~~~~~~L~~G---k~   80 (611)
                      |+|+|||||||||+++.|++.++  +.+|+.++ |+.                  +...+.+.+...+.+.|...   ..
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg--l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG--IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            78899999999999999999998  55677543 331                  22233334445555666433   46


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc-----cCCCCCCCHHHHHHHHHhh--ccCC
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH-----EGNLQGGKAAAVVNRMLQK--KELP  151 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~-----~g~~~~~vpeevi~rm~~~--~e~P  151 (611)
                      ||||+.+.+..|.+.+..+ ...+..+ .+|+|++|.+++++|+..|...     ...+.++.++.+.+|+...  ...|
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P  160 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP  160 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence            9999999888888877665 4444333 5889999999999999988421     0113344555555555321  1122


Q ss_pred             Cc--cCCccEEEEcCChhhHHHHHHH
Q 007244          152 KL--SEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       152 ~~--~EgFd~V~vv~~~~evd~av~~  175 (611)
                      ..  ++.-..++.++....++++...
T Consensus       161 Ll~~Y~e~~~lv~IDa~~siEEV~ee  186 (333)
T PRK13808        161 LVHYYSEKRKLLTVDGMMTIDEVTRE  186 (333)
T ss_pred             HHHHhhccCcEEEEECCCCHHHHHHH
Confidence            21  1211245666655555555443

>PRK14529 adenylate kinase; Provisional

Probab=99.15  E-value=3.9e-10  Score=113.77  Aligned_cols=104  Identities=17%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHC--CCcE
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--GKSV   81 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~--Gk~V   81 (611)
                      |+|.|+|||||||+++.|++.++..  +++. |.+++                  +...+.+.+...+.++|..  ...+
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~~--~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDLA--HIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC--CcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence            7889999999999999999999844  4653 33322                  2222333344666777754  3569


Q ss_pred             EEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 007244           82 FLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      |+|+++.+..|...+..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus        81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c  129 (223)
T PRK14529         81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLC  129 (223)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccc
Confidence            999999999999988765 4444332 5889999999999999999644

>PRK02496 adk adenylate kinase; Provisional

Probab=99.13  E-value=8.2e-10  Score=107.31  Aligned_cols=146  Identities=20%  Similarity=0.241  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      -|+|.|+|||||||+|+.|++.++  +.+++.+++ +                  .+...+.+.....+...+..   ..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence            378899999999999999999988  445765433 2                  12222223333555566653   34


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCC-CeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC---CC--
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL---PK--  152 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~-~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~---P~--  152 (611)
                      .+|||+.+.+..+...+..+ ...+ ....+|+|++|.+++.+|+..|.+.      +..++.+.+....|..   |.  
T Consensus        81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------dd~~~~~~~r~~~y~~~~~~v~~  154 (184)
T PRK02496         81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK------DDTEEVIRRRLEVYREQTAPLID  154 (184)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            69999998888777666554 3333 2346899999999999999999653      2344555554444322   21  


Q ss_pred             ccCCccEEEEcCChhhHHHHHHH
Q 007244          153 LSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       153 ~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      ..+.-..++.++....++++...
T Consensus       155 ~~~~~~~~~~Ida~~~~~~V~~~  177 (184)
T PRK02496        155 YYRDRQKLLTIDGNQSVEAVTTE  177 (184)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHH
Confidence            11111235566666666665544

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.13  E-value=3.9e-10  Score=106.63  Aligned_cols=101  Identities=26%  Similarity=0.326  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC----C-CC--cHHHH----HHHHHHHHHCCCcEEEecCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG----K-SG--TKVQC----LTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~----~-~~--~~~~~----~~~~~~~L~~Gk~VIID~tn   87 (611)
                      +|+|+|+|||||||+|+.+...+   +.....++.|.++..    . +.  .+.+.    ...+...+..|..||+|.++
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            48999999999999999999887   444567888877631    1 11  11121    23344566789999999999


Q ss_pred             CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      ..+..|..+..+ .  +..+.++++++|.++|.+|..+
T Consensus        81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence            999999888887 5  6778899999999999999644

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK06217 hypothetical protein; Validated

Probab=99.12  E-value=8.9e-10  Score=107.35  Aligned_cols=97  Identities=19%  Similarity=0.145  Sum_probs=69.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------CCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------KSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRT   94 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~   94 (611)
                      .|+|+|+|||||||+|++|++.++.+  +++.|.+...       ...+.+.....+.+.+..+..+|||+.... . +.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~--~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~-~-~~   78 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIP--HLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG-W-GD   78 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc--EEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH-H-HH
Confidence            49999999999999999999999854  5888777421       122334445666667777788999984422 1 11


Q ss_pred             HHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           95 DFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        95 ~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ...  ...+.   +|||++|.+++.+|+..|..
T Consensus        79 ~~~--~~~d~---~i~Ld~~~~~~~~Rl~~R~~  106 (183)
T PRK06217         79 PLE--PLFDL---VVFLTIPPELRLERLRLREF  106 (183)
T ss_pred             HHH--hhCCE---EEEEECCHHHHHHHHHcCcc
Confidence            111  33343   78999999999999999974

>smart00072 GuKc Guanylate kinase homologues

Probab=99.10  E-value=5.8e-10  Score=108.79  Aligned_cols=132  Identities=13%  Similarity=0.193  Sum_probs=84.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE-e--------------------ecchh----ccCCCCcHHH--------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTI----NKGKSGTKVQ--------   66 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~-I--------------------s~D~i----~~~~~~~~~~--------   66 (611)
                      +.+|+|+|||||||+|+++.|.+.++..+.. +                    +.+.+    ..+.+.++..        
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            4689999999999999999999886422211 1                    11111    1122222111        


Q ss_pred             HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        67 ~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      -...+...+..|+.+|+|.      ....+..+ +. ...+.+||+. ++.+++.+|+.+|..       +.++.+-+|+
T Consensus        82 ~~~~i~~~~~~~~~~ild~------~~~~~~~l~~~-~~~~~vIfi~~~s~~~l~~rl~~R~~-------~~~~~i~~rl  147 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDI------DPQGVKQLRKA-QLYPIVIFIAPPSSEELERRLRGRGT-------ETAERIQKRL  147 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEE------CHHHHHHHHHh-CCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence            1146788888999999999      45555555 33 3344577775 667889999999876       3556666666


Q ss_pred             HhhccCCCccCCccEEEEcCC
Q 007244          145 LQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus       145 ~~~~e~P~~~EgFd~V~vv~~  165 (611)
                      .....+......||.++.+++
T Consensus       148 ~~a~~~~~~~~~fd~~I~n~~  168 (184)
T smart00072      148 AAAQKEAQEYHLFDYVIVNDD  168 (184)
T ss_pred             HHHHHHHhhhccCCEEEECcC
Confidence            655333333355898888864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02459 probable adenylate kinase

Probab=99.10  E-value=1.7e-09  Score=111.27  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=76.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC----
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK----   77 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~----   77 (611)
                      ..|+|+|+|||||||+|+.|++.++  +.+|+...+ +                  .|...+.+-+...+.+.|..    
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            4477789999999999999999998  556764333 2                  23444444555777777764    


Q ss_pred             -CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 -Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                       ...+|||+++.+..|...+-.+.  . .-.+|+|++|.+++.+|+..|...
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~Le~~~--~-id~Vi~L~v~d~~l~~Rl~gR~~~  156 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEILEGVT--D-IDLVVNLKLREEVLVEKCLGRRIC  156 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHHHhcC--C-CCEEEEEECCHHHHHHHhhccccc
Confidence             25699999999998888775441  1 234889999999999999999653

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=99.10  E-value=3.8e-11  Score=112.74  Aligned_cols=105  Identities=9%  Similarity=0.005  Sum_probs=80.6

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeeccccccccc-ccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEE-VKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~  272 (611)
                      +.....++.++..+++.+.-   ..+++     .  .|.++++.|.++-|.+.|.|...... ....+...-.+|+.++.
T Consensus        35 aI~~aaG~~l~~e~~~~~~~---~~G~~-----~--~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~  104 (140)
T cd02905          35 KIFARAGSELREEIQTLGGC---RTGEA-----K--LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAK  104 (140)
T ss_pred             HHHHHhCHHHHHHHHHhCCC---CCCcE-----E--EecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            44555677888888776541   22333     1  47788999999999999999862211 12333345566789999


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~  308 (611)
                      +.+++|||||+||||+||||.++||+|++++|++|+
T Consensus       105 ~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l  140 (140)
T cd02905         105 ELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL  140 (140)
T ss_pred             HcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999985

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.08  E-value=1.2e-09  Score=104.37  Aligned_cols=103  Identities=22%  Similarity=0.265  Sum_probs=75.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCC----cH---H----HHHHHHHHHHHCCCcEEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK---V----QCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~----~~---~----~~~~~~~~~L~~Gk~VIID   84 (611)
                      +|.+|+|+|+|||||||+|++|.+.+   +.....++.|.++.+...    ..   .    ++...+.....+|..||+.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            47899999999999999999998765   456788999999865321    11   1    2225556667889999999


Q ss_pred             cCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      .....++.|...+.+ ...  .+..||+++|.++|.+|..
T Consensus        81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTT
T ss_pred             eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCc
Confidence            999999999998888 433  5678999999999999963

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.06  E-value=1.5e-09  Score=108.13  Aligned_cols=146  Identities=13%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--------------------eEEeecchh----ccCCCCcHHH----H
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------------------WARICQDTI----NKGKSGTKVQ----C   67 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--------------------~~~Is~D~i----~~~~~~~~~~----~   67 (611)
                      .+..+.+|+|+|||||||||+++.|.+.....                    |..++.+.+    ..+.+..+.+    .
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            66788999999999999999999997642111                    111222221    1223332211    1


Q ss_pred             H----HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           68 L----TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        68 ~----~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                      +    ..+...++.|+.+|+|.      ..+....+ +..+..+.++.++++.+++.+|+.+|..+       .++++..
T Consensus        89 YGt~~~~i~~~~~~g~~vi~~~------~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~-------~~~~~~~  155 (206)
T PRK14738         89 YGVPKAPVRQALASGRDVIVKV------DVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTE-------SPEELER  155 (206)
T ss_pred             ecCCHHHHHHHHHcCCcEEEEc------CHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC-------CHHHHHH
Confidence            1    46788899999999987      23343334 32332233344456788999999999763       3456667


Q ss_pred             HHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          143 RMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       143 rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      |+...+.+....+.|+.+++. ..++++++...
T Consensus       156 Rl~~~~~e~~~~~~~~~~iId-~~~~~e~v~~~  187 (206)
T PRK14738        156 RLATAPLELEQLPEFDYVVVN-PEDRLDEAVAQ  187 (206)
T ss_pred             HHHHHHHHHhcccCCCEEEEC-CCCCHHHHHHH
Confidence            766655433333446655544 33445555443

>PRK14526 adenylate kinase; Provisional

Probab=99.05  E-value=3.5e-09  Score=106.06  Aligned_cols=101  Identities=17%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GKS   80 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---Gk~   80 (611)
                      |+|+|+|||||||+++.+++.++  +.+++.+.+ +.                  +...+.+.+...+.+.|..   ...
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g   80 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN   80 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence            77899999999999999999888  445764443 21                  2222222333556666653   456


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                      +|||+.+.+..+...+... ..    ..+++|++|.+++.+|+..|..++
T Consensus        81 ~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~~  126 (211)
T PRK14526         81 FILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRICK  126 (211)
T ss_pred             EEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCccc
Confidence            9999999888888777554 22    246788999999999999997543

>PRK08118 topology modulation protein; Reviewed

Probab=99.05  E-value=1.1e-09  Score=105.68  Aligned_cols=96  Identities=24%  Similarity=0.376  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cCCCC-cHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~~~~-~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~   98 (611)
                      -|+++|+|||||||+|++|.+.++.++  ++.|.+.  .++.. ..+++...+.+ +..+..+|+|+. +.......+  
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~--~~lD~l~~~~~w~~~~~~~~~~~~~~-~~~~~~wVidG~-~~~~~~~~l--   76 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPV--HHLDALFWKPNWEGVPKEEQITVQNE-LVKEDEWIIDGN-YGGTMDIRL--   76 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCc--eecchhhcccCCcCCCHHHHHHHHHH-HhcCCCEEEeCC-cchHHHHHH--
Confidence            389999999999999999999999655  5556553  33333 22333344444 445578999994 332221111  


Q ss_pred             hCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           99 LGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        99 l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       ...+   .+|+|++|.++|..|+.+|..
T Consensus        77 -~~~d---~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         77 -NAAD---TIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             -HhCC---EEEEEeCCHHHHHHHHHHHHH
Confidence             2223   389999999999999999954

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.04  E-value=4.9e-09  Score=102.38  Aligned_cols=146  Identities=18%  Similarity=0.235  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------------------CCCcHHHHHHHHHHHHHCCC---
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KSGTKVQCLTSASSALKKGK---   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------------------~~~~~~~~~~~~~~~L~~Gk---   79 (611)
                      -|+++|+|||||||+|++|++.++  +.|++.+.+...                   ...+..-....+..++....   
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~   79 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA   79 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence            389999999999999999999977  667997665321                   11122222245555555532   


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc--cCCCccC
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--ELPKLSE  155 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~--e~P~~~E  155 (611)
                      .+|+|+.+.+..+-..+.++ ...+. .-.++.++.+.+.+..|+..|..    +.++.++.+.+|+....  ..|. .+
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R~~~y~~~~~pl-i~  154 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKRLKVYHEQTAPL-IE  154 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHHHHHHHhcccch-hh
Confidence            69999988888777766666 44443 23688899999999999999964    22355666655555432  2222 23


Q ss_pred             CccEEEEcCChhhHHHHHHHh
Q 007244          156 GFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       156 gFd~V~vv~~~~evd~av~~~  176 (611)
                      -|.  +.++...+++++...+
T Consensus       155 ~y~--~~id~~~~i~~v~~~i  173 (178)
T COG0563         155 YYS--VTIDGSGEIEEVLADI  173 (178)
T ss_pred             hhe--eeccCCCCHHHHHHHH
Confidence            333  5566666777666544

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.04  E-value=1.9e-09  Score=104.15  Aligned_cols=124  Identities=21%  Similarity=0.286  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------------CCCCcHHHHHHHHHHHHHCCCcEEEec--
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------GKSGTKVQCLTSASSALKKGKSVFLDR--   85 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------------~~~~~~~~~~~~~~~~L~~Gk~VIID~--   85 (611)
                      -|+|+|++||||||+++.|++.++.+|  ++.|.+-.              |+..-+..-...+.+.+..+..||--+  
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F--~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG   81 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALNLPF--IDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG   81 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcCCCc--ccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence            489999999999999999999999776  77776632              111111111234444555553343333  


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccC
Q 007244           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE  155 (611)
Q Consensus        86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~E  155 (611)
                      ...+++.|..+   +..+.   +|||++|.+++.+|+.....+|. +....|.+.++..++.. .|.+.+
T Consensus        82 ~v~~~enr~~l---~~~g~---vv~L~~~~e~l~~Rl~~~~~RPl-l~~~~~~~~l~~L~~~R-~~~Y~e  143 (172)
T COG0703          82 AVLSEENRNLL---KKRGI---VVYLDAPFETLYERLQRDRKRPL-LQTEDPREELEELLEER-QPLYRE  143 (172)
T ss_pred             cccCHHHHHHH---HhCCe---EEEEeCCHHHHHHHhccccCCCc-ccCCChHHHHHHHHHHH-HHHHHH
Confidence            44555666666   55554   99999999999999985444442 44556656566666554 233344

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.03  E-value=4.9e-09  Score=106.26  Aligned_cols=104  Identities=22%  Similarity=0.272  Sum_probs=75.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHHHHHHHHHHC---
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK---   77 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~~~~~~~L~~---   77 (611)
                      |.-|+|+|+|||||||+|+.|++.++  +.+|+.|.+..                   +...+.+.+...+.+.+..   
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence            34499999999999999999999998  55687665521                   1222223344555555544   


Q ss_pred             --CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           78 --GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 --Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                        +..+|+|+.+.+..++..+...   .....+++|++|.+++.+|+..|..+
T Consensus        84 ~~~~g~iLDGfPRt~~Qa~~l~~~---~~~~~vi~l~~~~~~~~~Rl~~Rr~~  133 (229)
T PTZ00088         84 DCFKGFILDGFPRNLKQCKELGKI---TNIDLFVNIYLPRNILIKKLLGRRIC  133 (229)
T ss_pred             ccCceEEEecCCCCHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHcCcCC
Confidence              4679999988888888776443   12235889999999999999999653

>PRK13946 shikimate kinase; Provisional

Probab=99.01  E-value=4e-09  Score=103.00  Aligned_cols=144  Identities=18%  Similarity=0.210  Sum_probs=89.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-----------c-H-HHH-HHHHHHHHHCCCcEEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T-K-VQC-LTSASSALKKGKSVFLD   84 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-----------~-~-~~~-~~~~~~~L~~Gk~VIID   84 (611)
                      ++..|+|+|+|||||||+++.|++.++.++  ++.|.+.....+           . + ... ...+...+..+..||..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~--id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~   86 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPF--LDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT   86 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCe--ECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            456899999999999999999999999555  777765321111           0 0 011 13334444455555555


Q ss_pred             c--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEE
Q 007244           85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITL  162 (611)
Q Consensus        85 ~--tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~v  162 (611)
                      +  +.+.+..|..+   +..+   ..|||+.|.+++.+|+..|..++- .....+.+.++++.+.+.+ .+.+ ++ +++
T Consensus        87 ggg~~~~~~~r~~l---~~~~---~~v~L~a~~e~~~~Rl~~r~~rp~-~~~~~~~~~i~~~~~~R~~-~y~~-~d-l~i  156 (184)
T PRK13946         87 GGGAFMNEETRAAI---AEKG---ISVWLKADLDVLWERVSRRDTRPL-LRTADPKETLARLMEERYP-VYAE-AD-LTV  156 (184)
T ss_pred             CCCCcCCHHHHHHH---HcCC---EEEEEECCHHHHHHHhcCCCCCCc-CCCCChHHHHHHHHHHHHH-HHHh-CC-EEE
Confidence            4  34566666655   3333   378999999999999998876542 1223456778887777653 3233 34 445


Q ss_pred             cCChhhHHHHHH
Q 007244          163 CQNENDVQAALD  174 (611)
Q Consensus       163 v~~~~evd~av~  174 (611)
                      +.+...+++++.
T Consensus       157 ~~~~~~~~~~~~  168 (184)
T PRK13946        157 ASRDVPKEVMAD  168 (184)
T ss_pred             ECCCCCHHHHHH
Confidence            555545555544

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.99  E-value=4.9e-09  Score=101.98  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=80.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-----CCc--HH----HHHHHHHHHHHCCCcE
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGT--KV----QCLTSASSALKKGKSV   81 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-----~~~--~~----~~~~~~~~~L~~Gk~V   81 (611)
                      ..+++.+|+|+|+|||||||+++.+...+.   .....++.|.++...     +..  ..    .+...+...+..|..|
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V   93 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV   93 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence            457789999999999999999999988753   235677888876421     111  11    1224455677899999


Q ss_pred             EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      |+|+++..+.+|..+..+ ...  .+.+|++++|.+++.+|..
T Consensus        94 I~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~  134 (184)
T TIGR00455        94 ITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDP  134 (184)
T ss_pred             EEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCc
Confidence            999999999999888887 544  4678999999999999943

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.99  E-value=3.1e-09  Score=102.43  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe--------------------ecchh----ccCCCCcH--------HHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARI--------------------CQDTI----NKGKSGTK--------VQCL   68 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I--------------------s~D~i----~~~~~~~~--------~~~~   68 (611)
                      .+|+|+||+||||||+++.|.+.++..+..+                    +.+.+    ..+.+..+        ....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            5899999999999999999998654222111                    11111    01111100        0113


Q ss_pred             HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        69 ~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      ..+...+..|+.+|+|.+      ...+..+ ........+++++++.+++.+|+..|..       ...+.+..++...
T Consensus        82 ~~i~~~~~~g~~vi~d~~------~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~-------~~~~~i~~rl~~~  148 (180)
T TIGR03263        82 SPVEEALAAGKDVLLEID------VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGT-------DSEEVIERRLAKA  148 (180)
T ss_pred             HHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHHHHHHH
Confidence            567888999999999983      3333334 3333334566667888999999998865       2334455555444


Q ss_pred             ccCCCccCCccEEEEcCC
Q 007244          148 KELPKLSEGFSRITLCQN  165 (611)
Q Consensus       148 ~e~P~~~EgFd~V~vv~~  165 (611)
                      .+.......||.++.+++
T Consensus       149 ~~~~~~~~~~d~~i~n~~  166 (180)
T TIGR03263       149 KKEIAHADEFDYVIVNDD  166 (180)
T ss_pred             HHHHhccccCcEEEECCC
Confidence            333223445888887754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK07261 topology modulation protein; Provisional

Probab=98.97  E-value=2.7e-09  Score=103.24  Aligned_cols=98  Identities=19%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cCCCC-cHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~~~~-~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~   98 (611)
                      -|+|+|+|||||||||++|.+.++.++  ++.|.+.  .++.. ..++....+...+..+. +|||+++........+  
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~--i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l--   76 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPV--LHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM--   76 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCe--EecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--
Confidence            389999999999999999999988554  6666664  22222 33456677777777665 9999965432222222  


Q ss_pred             hCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           99 LGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        99 l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                       .....   +|+|++|..+|..|+.+|..+
T Consensus        77 -~~ad~---vI~Ld~p~~~~~~R~lkR~~~  102 (171)
T PRK07261         77 -QEADQ---IIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             -HHCCE---EEEEcCCHHHHHHHHHHHHHH
Confidence             22232   899999999999999999653

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.97  E-value=1.1e-08  Score=97.88  Aligned_cols=139  Identities=17%  Similarity=0.284  Sum_probs=99.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH--HCCCcEEEecCCCCHHHHHHHHHh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDRCNLEREQRTDFVKL   99 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L--~~Gk~VIID~tnl~~~~R~~~~~l   99 (611)
                      ||+=++.+||||||++..|.+-++. |.||-.|.|...   ....+.+.+.+.|  .....||+|..|.....|+.++..
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~   76 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFED   76 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH
Confidence            4778999999999999999998875 778999998433   4445667777888  556779999999999999988765


Q ss_pred             -CC--C-------CCeEEEEEEeC--CH----HHHHHHHHhccc-ccCCCCCC----CHHHHHHHHHhhccCCCc----c
Q 007244          100 -GG--P-------EVDVHAVVLDL--PA----KLCISRSVKRIE-HEGNLQGG----KAAAVVNRMLQKKELPKL----S  154 (611)
Q Consensus       100 -~~--~-------~~~v~vV~Ld~--p~----e~~~~Rl~~R~~-~~g~~~~~----vpeevi~rm~~~~e~P~~----~  154 (611)
                       ..  .       +..++++.+..  +.    +++.+|..+|+. |.+.+.+.    ....+++.+.++|++...    .
T Consensus        77 ~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~~~~pD  156 (168)
T PF08303_consen   77 VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDPDREPD  156 (168)
T ss_pred             HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence             22  1       22333333322  23    568899999985 44443322    346788888899987554    4


Q ss_pred             CCccEEEEcC
Q 007244          155 EGFSRITLCQ  164 (611)
Q Consensus       155 EgFd~V~vv~  164 (611)
                      .+||.|+-++
T Consensus       157 ~~FD~vI~L~  166 (168)
T PF08303_consen  157 SGFDHVIDLD  166 (168)
T ss_pred             cccCEeEeCc
Confidence            5799887664

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.96  E-value=8.5e-09  Score=97.13  Aligned_cols=98  Identities=19%  Similarity=0.300  Sum_probs=70.9

Q ss_pred             EEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-------------------ccCCCCcHHHHHHHHHHHHHCC---CcEE
Q 007244           25 MVGAPGSGKSTFCEHVMRSSARPWARICQDTI-------------------NKGKSGTKVQCLTSASSALKKG---KSVF   82 (611)
Q Consensus        25 LvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-------------------~~~~~~~~~~~~~~~~~~L~~G---k~VI   82 (611)
                      |+|+|||||||+|++|++.++  +.+|+..++                   .++...+.+-+...+...|...   ..+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence            689999999999999999998  677884333                   2344444444556667777644   6799


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCe-EEEEEEeCCHHHHHHHHHh
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      ||+.+.+..+...+.++ ...+.. -.+|+|++|.+++.+|+..
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            99999999998888774 223333 3789999999999999887

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.94  E-value=4.8e-09  Score=101.20  Aligned_cols=105  Identities=16%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC-----CCCcH-HH---HHHHHHH-HHHCCCcEEE
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-----KSGTK-VQ---CLTSASS-ALKKGKSVFL   83 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~-----~~~~~-~~---~~~~~~~-~L~~Gk~VII   83 (611)
                      .++|.+|+|+|+|||||||+++.+.+.+.   ..+..++.|.++..     ..... .+   ....+.+ ....|..||+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~   83 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIV   83 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45678999999999999999999988775   23556777777531     11111 11   1122222 3357889999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      |+++.....+.....+   -....+|||++|.+++.+|+..
T Consensus        84 ~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         84 TTISMFDEIYAYNRKH---LPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             EeCCcHHHHHHHHHhh---cCCeEEEEEeCCHHHHHHhchh
Confidence            9987655444444333   1123588999999999999753

>PRK13948 shikimate kinase; Provisional

Probab=98.94  E-value=1e-08  Score=100.51  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=76.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------cHHHHH-HHHHHHHHCCCcEE
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCL-TSASSALKKGKSVF   82 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------~~~~~~-~~~~~~L~~Gk~VI   82 (611)
                      ...+..|+|+|+|||||||+++.|++.++.++  |+.|.+.....+             .+.++. ..+.+.+..+ ..|
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~--iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~-~~V   83 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHF--IDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLD-YAV   83 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--EECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-CeE
Confidence            35678999999999999999999999999555  777766432111             111222 2333344444 445


Q ss_pred             Ee---cCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           83 LD---RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        83 ID---~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      |.   ++...+..|..+   +..+.   +|||+.|.+++.+|+..+ .++. .....+.+.+.+++.+.
T Consensus        84 Ia~GgG~v~~~~n~~~l---~~~g~---vV~L~~~~e~l~~Rl~~~-~RPl-l~~~~~~~~l~~l~~~R  144 (182)
T PRK13948         84 ISLGGGTFMHEENRRKL---LSRGP---VVVLWASPETIYERTRPG-DRPL-LQVEDPLGRIRTLLNER  144 (182)
T ss_pred             EECCCcEEcCHHHHHHH---HcCCe---EEEEECCHHHHHHHhcCC-CCCC-CCCCChHHHHHHHHHHH
Confidence            55   456666777765   44444   789999999999999433 3332 22223444556666554

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=98.94  E-value=6.7e-10  Score=106.95  Aligned_cols=109  Identities=9%  Similarity=0.090  Sum_probs=84.4

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      ......++.+++.+++....  .. |++     .  .|...++.|.+.-|++.|.|..+..+....+...-.+|+..+.+
T Consensus        34 ai~~~~G~~l~~e~~~~~~~--~~-G~~-----v--~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~  103 (165)
T cd02908          34 AIHRAAGPELLEECRELRGC--PT-GEA-----V--ITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARE  103 (165)
T ss_pred             HHHHHhCHHHHHHHHHhCCC--CC-CCE-----E--EeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            44556678889888887654  11 222     1  35667888999999999999753223334444566778899999


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~  312 (611)
                      .+++|||||+||||+||||.++||+++++++++|+++..
T Consensus       104 ~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~  142 (165)
T cd02908         104 NGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHD  142 (165)
T ss_pred             cCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999998743

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.94  E-value=5.9e-09  Score=99.16  Aligned_cols=146  Identities=15%  Similarity=0.172  Sum_probs=80.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------cHHHHHHHHHHHHHCCCcEEEe
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------~~~~~~~~~~~~L~~Gk~VIID   84 (611)
                      +++.+|+|+|+|||||||+|+.|++.++.++  ++.|.+.....+             .+.+....+...+..+..+||.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~--~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~   79 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDF--IDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIS   79 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCE--EEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            4567999999999999999999999998544  677665322111             0111112222333333333444


Q ss_pred             cC---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEE
Q 007244           85 RC---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (611)
Q Consensus        85 ~t---nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~  161 (611)
                      ..   .+....|..+   +..+   .+|++++|.+++.+|+..|..++.. ......+.+..++..... .+.+.++ ++
T Consensus        80 ~g~~~~~~~~~r~~l---~~~~---~~v~l~~~~~~~~~R~~~~~~r~~~-~~~~~~~~~~~~~~~~~~-~~~~~~d-l~  150 (175)
T PRK00131         80 TGGGAVLREENRALL---RERG---TVVYLDASFEELLRRLRRDRNRPLL-QTNDPKEKLRDLYEERDP-LYEEVAD-IT  150 (175)
T ss_pred             eCCCEeecHHHHHHH---HhCC---EEEEEECCHHHHHHHhcCCCCCCcC-CCCChHHHHHHHHHHHHH-HHHhhcC-eE
Confidence            32   1233333322   3333   4789999999999999887653221 112334455555554422 2223243 44


Q ss_pred             EcCChhhHHHHHH
Q 007244          162 LCQNENDVQAALD  174 (611)
Q Consensus       162 vv~~~~evd~av~  174 (611)
                      +..+...+++++.
T Consensus       151 idt~~~~~~e~~~  163 (175)
T PRK00131        151 VETDGRSPEEVVN  163 (175)
T ss_pred             EeCCCCCHHHHHH
Confidence            5544455554443

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.94  E-value=7.9e-09  Score=101.84  Aligned_cols=144  Identities=16%  Similarity=0.216  Sum_probs=84.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe--------------------ecchhc----cCCCCcH--------H
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI--------------------CQDTIN----KGKSGTK--------V   65 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I--------------------s~D~i~----~~~~~~~--------~   65 (611)
                      .++.+|+|+|+|||||||+++.|+..++..+..+                    +.+.+.    .+.+...        .
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence            4667999999999999999999998765222111                    111111    1111100        0


Q ss_pred             HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      .....+...+..|..+|+|..      ......+ ...+..+.+++++++.+++.+|+..|..       ...+.+-.|+
T Consensus        83 ~~~~~i~~~l~~g~~vi~dl~------~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~-------~~~~~i~~rl  149 (205)
T PRK00300         83 TPRSPVEEALAAGKDVLLEID------WQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGT-------DSEEVIARRL  149 (205)
T ss_pred             CcHHHHHHHHHcCCeEEEeCC------HHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence            013567888999999999983      3333333 3333334555667889999999999975       2334444444


Q ss_pred             HhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244          145 LQKKELPKLSEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      ......-.....|+.+++++   +++++...+.
T Consensus       150 ~~~~~~~~~~~~~d~vi~n~---~~e~~~~~l~  179 (205)
T PRK00300        150 AKAREEIAHASEYDYVIVND---DLDTALEELK  179 (205)
T ss_pred             HHHHHHHHhHHhCCEEEECC---CHHHHHHHHH
Confidence            43332222234578887654   3455555444

>PLN02772 guanylate kinase

Probab=98.93  E-value=5.8e-09  Score=112.47  Aligned_cols=153  Identities=13%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCe----EEee-----------------cchh----ccCCCCcHHHH------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW----ARIC-----------------QDTI----NKGKSGTKVQC------   67 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~----~~Is-----------------~D~i----~~~~~~~~~~~------   67 (611)
                      ...+|+|+||+|+||+|++++|.+.+...+    .+.+                 .+.+    ..+.+.++.++      
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            557999999999999999999988653211    1111                 1111    12333332211      


Q ss_pred             --HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           68 --LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        68 --~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                        .+.+...+++|+.+|+|.      +.+....+ ...-..+.+++++++.+++.+|+..|..       ..++++.+|+
T Consensus       214 Tsk~~V~~vl~~Gk~vILdL------D~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGt-------eseE~I~kRL  280 (398)
T PLN02772        214 TSIEAVEVVTDSGKRCILDI------DVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGT-------ETEEQIQKRL  280 (398)
T ss_pred             ccHHHHHHHHHhCCcEEEeC------CHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence              167788889999999998      55555555 2222345566667789999999999987       3556666777


Q ss_pred             HhhccCCC---ccCCccEEEEcCChhhHHHHHHHhccCCCCcccC-CCCCCC
Q 007244          145 LQKKELPK---LSEGFSRITLCQNENDVQAALDTYSGLGPLDTLP-HGSFGQ  192 (611)
Q Consensus       145 ~~~~e~P~---~~EgFd~V~vv~~~~evd~av~~~~~lgp~dII~-~gc~~~  192 (611)
                      .....+..   ....||++++++   +++++..++.     .||. ++|-..
T Consensus       281 ~~A~~Ei~~~~~~~~fD~vIvND---dLe~A~~~L~-----~iL~~~~~~~~  324 (398)
T PLN02772        281 RNAEAELEQGKSSGIFDHILYND---NLEECYKNLK-----KLLGLDGLAAV  324 (398)
T ss_pred             HHHHHHHhhccccCCCCEEEECC---CHHHHHHHHH-----HHHhhcCcccc
Confidence            66532222   234689888874   5666666555     5555 666443

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.93  E-value=1.4e-08  Score=100.15  Aligned_cols=105  Identities=21%  Similarity=0.243  Sum_probs=77.9

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC---C----CcHH----HHHHHHHHHHHCCCc
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---S----GTKV----QCLTSASSALKKGKS   80 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~---~----~~~~----~~~~~~~~~L~~Gk~   80 (611)
                      ...++|.+|+|+|+|||||||+++.|...+.   .....++.|.++...   .    ....    .+...+...+..|..
T Consensus        19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~   98 (198)
T PRK03846         19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLV   98 (198)
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCE
Confidence            3567899999999999999999999988652   335678877775321   1    1111    122445566778888


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHH
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR  121 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R  121 (611)
                      ||.+..+..+..|..++.+ ...+  +.+|+|++|.+++.+|
T Consensus        99 VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         99 VLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR  138 (198)
T ss_pred             EEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence            8877777778999999888 5553  4579999999999999

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1e-08  Score=98.88  Aligned_cols=106  Identities=24%  Similarity=0.282  Sum_probs=78.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCC---C-cH-H------HHHHHHHHHHHCCCcE
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS---G-TK-V------QCLTSASSALKKGKSV   81 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~---~-~~-~------~~~~~~~~~L~~Gk~V   81 (611)
                      ...++.+|+|+|+|||||||+|.+|.+.+   +.....++.|.++.+-.   + +. +      .+...+......|-.|
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iv   98 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIV   98 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEE
Confidence            56778999999999999999999998765   34567889999986532   1 11 1      1224445555677777


Q ss_pred             EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      |+......++.|+..+++ .+.  .++-||+++|.++|.+|--
T Consensus        99 iva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RDp  139 (197)
T COG0529          99 IVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRDP  139 (197)
T ss_pred             EEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcCc
Confidence            777777888999998888 443  4568899999999999863

>PRK13947 shikimate kinase; Provisional

Probab=98.91  E-value=8.3e-09  Score=98.65  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHHHHHHHHHHCCCcEEEecC--
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDRC--   86 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~~~~~~~L~~Gk~VIID~t--   86 (611)
                      -|+|+|+|||||||+|+.|++.++.++  ++.|.+.....+.             +......+.+.+....++||...  
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~--id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g   80 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGF--IDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG   80 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCE--EECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence            389999999999999999999999555  7777664322111             11122334445554455565432  


Q ss_pred             -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        87 -nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                       .+....+..+   +..+.   +|||++|.+++.+|+..|..+
T Consensus        81 ~vl~~~~~~~l---~~~~~---vv~L~~~~~~l~~Rl~~r~~r  117 (171)
T PRK13947         81 VVLNPENVVQL---RKNGV---VICLKARPEVILRRVGKKKSR  117 (171)
T ss_pred             CcCCHHHHHHH---HhCCE---EEEEECCHHHHHHHhcCCCCC
Confidence             2333333322   44443   899999999999999888654

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.91  E-value=1.3e-08  Score=98.23  Aligned_cols=139  Identities=16%  Similarity=0.161  Sum_probs=78.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEe----ecc--------------hh----ccCCCCcHHH-------HHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARP--WARI----CQD--------------TI----NKGKSGTKVQ-------CLT   69 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~I----s~D--------------~i----~~~~~~~~~~-------~~~   69 (611)
                      .+++|+|+|||||||+++.|+..++..  ..++    ..+              .+    ..+.+....+       ...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            479999999999999999998876521  1111    111              11    0111111000       112


Q ss_pred             HHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc
Q 007244           70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (611)
Q Consensus        70 ~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e  149 (611)
                      .+...+..|..||+|+.   ...+..+...  . ....+|+|++|.+++.+|+..|.+       ..++.+..++.....
T Consensus        82 ~i~~~~~~g~~vv~~g~---~~~~~~~~~~--~-~~~~~i~l~~~~~~~~~Rl~~R~~-------~~~~~~~~rl~~~~~  148 (179)
T TIGR02322        82 EIDQWLEAGDVVVVNGS---RAVLPEARQR--Y-PNLLVVNITASPDVLAQRLAARGR-------ESREEIEERLARSAR  148 (179)
T ss_pred             HHHHHHhcCCEEEEECC---HHHHHHHHHH--C-CCcEEEEEECCHHHHHHHHHHcCC-------CCHHHHHHHHHHHhh
Confidence            34566788999999984   2222222222  1 244688999999999999999865       244555566543321


Q ss_pred             CCCccCCccEEEEcCChhhHHHHHHH
Q 007244          150 LPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       150 ~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      . .. +.++.+++. +...++++...
T Consensus       149 ~-~~-~~~~~~vi~-~~~~~ee~~~~  171 (179)
T TIGR02322       149 F-AA-APADVTTID-NSGSLEVAGET  171 (179)
T ss_pred             c-cc-ccCCEEEEe-CCCCHHHHHHH
Confidence            1 11 223444343 33456655543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK06547 hypothetical protein; Provisional

Probab=98.88  E-value=1.3e-08  Score=98.87  Aligned_cols=106  Identities=21%  Similarity=0.258  Sum_probs=70.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-HH--HHHHHHHH--------------------
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-KV--QCLTSASS--------------------   73 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-~~--~~~~~~~~--------------------   73 (611)
                      ...+.+|++.|+|||||||+++.|++.++  +..++.|.+..++... ..  .+...+.+                    
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~   89 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV   89 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence            45678899999999999999999999887  4457888887654321 11  11111110                    


Q ss_pred             HHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .+..+..+|++++.....   .+..+ .. +..+.+||+++|.+++++|..+|..+
T Consensus        90 ~l~~~~vVIvEG~~al~~---~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~  141 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTA---ANVALASL-LGEVLTVWLDGPEALRKERALARDPD  141 (172)
T ss_pred             EeCCCCeEEEEehhhccH---HHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch
Confidence            011234588999654322   23333 33 33467999999999999999999764

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.87  E-value=1.1e-08  Score=99.66  Aligned_cols=140  Identities=15%  Similarity=0.266  Sum_probs=86.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eee--------------------cchhc----cCCCCcHH--------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC--------------------QDTIN----KGKSGTKV--------   65 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is--------------------~D~i~----~~~~~~~~--------   65 (611)
                      ++++|+|+||+||||||++++|.+.++..+. .++                    .+.+.    .+.+.++.        
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            3568999999999999999999998764332 121                    11110    11111110        


Q ss_pred             HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                      .-...+...+..|+.+|+|.      ....+..+ +. +..+.+||+. .+.+.+.+|+..|..       +..+++.++
T Consensus        81 t~~~~i~~~~~~gk~~il~~------~~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~-------~~~~~i~~r  146 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDV------DPEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGD-------ESEEEIEER  146 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEE------THHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTH-------CHHHHHHHH
T ss_pred             hccchhhHhhhcCCcEEEEc------cHHHHHHHHhc-ccCceEEEEEccchHHHHHHHhcccc-------ccHHHHHHH
Confidence            01267788899999999998      56666666 33 5566677775 557888888888765       334455555


Q ss_pred             HHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          144 MLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       144 m~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      +...-..-.....||.++.+++   ++.+...
T Consensus       147 ~~~~~~~~~~~~~fd~vi~n~~---le~~~~~  175 (183)
T PF00625_consen  147 LERAEKEFEHYNEFDYVIVNDD---LEEAVKE  175 (183)
T ss_dssp             HHHHHHHHGGGGGSSEEEECSS---HHHHHHH
T ss_pred             HHHHHHHHhHhhcCCEEEECcC---HHHHHHH
Confidence            5543222222222999888754   4444443

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.87  E-value=2.5e-08  Score=96.58  Aligned_cols=144  Identities=16%  Similarity=0.229  Sum_probs=83.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC---cH----------HHHHHHHHHHHHCCCcEEEec-
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---TK----------VQCLTSASSALKKGKSVFLDR-   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~---~~----------~~~~~~~~~~L~~Gk~VIID~-   85 (611)
                      ...|+|+|++||||||+++.+++.++.++  ++.|.......+   .+          ......+...+.....+|+.. 
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~--vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g   81 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG   81 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcE--EECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            34699999999999999999999988554  666654221111   00          011123333344445566653 


Q ss_pred             --CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEc
Q 007244           86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (611)
Q Consensus        86 --tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv  163 (611)
                        ....+..+..+   +..+.   +|||++|.++|.+|+..+..++.. .+..+.+.+..++... .|.+.+ +.++++.
T Consensus        82 gg~v~~~~~~~~l---~~~~~---vv~L~~~~e~~~~Ri~~~~~rP~~-~~~~~~~~~~~l~~~R-~~~Y~~-~Ad~~id  152 (172)
T PRK05057         82 GGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPLL-QVDDPREVLEALANER-NPLYEE-IADVTIR  152 (172)
T ss_pred             CchhCCHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCHHHHHHHHHHHH-HHHHHh-hCCEEEE
Confidence              22334444333   44454   899999999999999876655432 2233455666666655 343333 3345555


Q ss_pred             CChhhHHHHHH
Q 007244          164 QNENDVQAALD  174 (611)
Q Consensus       164 ~~~~evd~av~  174 (611)
                      .+...+++++.
T Consensus       153 t~~~s~~ei~~  163 (172)
T PRK05057        153 TDDQSAKVVAN  163 (172)
T ss_pred             CCCCCHHHHHH
Confidence            44444544443

>PRK01184 hypothetical protein; Provisional

Probab=98.87  E-value=4.2e-08  Score=95.24  Aligned_cols=101  Identities=21%  Similarity=0.294  Sum_probs=66.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhccC-----CC------CcH----------HHHHHHHHHHHHC-
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINKG-----KS------GTK----------VQCLTSASSALKK-   77 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~~-----~~------~~~----------~~~~~~~~~~L~~-   77 (611)
                      .+|+|+|+|||||||+++ ++++++  +.+++. |.+++.     ..      +..          ..+...+...+.. 
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~   78 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK   78 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence            489999999999999987 778888  445764 555321     10      100          0011222233433 


Q ss_pred             -CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        78 -Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       +..||+|++ ....++..+.+.  .+....+|++++|.+++.+|+..|..
T Consensus        79 ~~~~vvidg~-r~~~e~~~~~~~--~~~~~~~i~v~~~~~~~~~Rl~~R~~  126 (184)
T PRK01184         79 GDEVVVIDGV-RGDAEVEYFRKE--FPEDFILIAIHAPPEVRFERLKKRGR  126 (184)
T ss_pred             CCCcEEEeCC-CCHHHHHHHHHh--CCcccEEEEEECCHHHHHHHHHHcCC
Confidence             577999996 566666666554  22234688999999999999998864

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.87  E-value=2e-08  Score=101.20  Aligned_cols=132  Identities=16%  Similarity=0.191  Sum_probs=82.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC---------CCC--------c----HHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---------KSG--------T----KVQCLTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~---------~~~--------~----~~~~~~~~   71 (611)
                      ....+.+|+|+|+||.|||++|++|.+-+.   ....+++...+++.         .+.        .    ...+++.+
T Consensus         8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl   87 (222)
T PF01591_consen    8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL   87 (222)
T ss_dssp             -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence            356678999999999999999999987544   33445564444310         000        0    11234666


Q ss_pred             HHHHH--CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc-CCCCCCCHHHHHHHHHhh
Q 007244           72 SSALK--KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE-GNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        72 ~~~L~--~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~-g~~~~~vpeevi~rm~~~  147 (611)
                      ...|.  .|...|+|+||.+++.|+.+.+. +..++.+.+|-.-|+.+.+++++..+.... ..+.+..+++.++.+.++
T Consensus        88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R  167 (222)
T PF01591_consen   88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR  167 (222)
T ss_dssp             HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence            67777  45678999999999999999999 778888888888889999999888776532 223445677777776665

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.86  E-value=2.2e-08  Score=113.86  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=82.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhccCCCC-----c--HHH----HHHHHHHHHHCCCc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKGKSG-----T--KVQ----CLTSASSALKKGKS   80 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~~~~~-----~--~~~----~~~~~~~~L~~Gk~   80 (611)
                      ....+.+|+|+|+|||||||+|+.|++.++.    ....++.|.++.+..+     .  +..    +...+...++.|..
T Consensus       388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~  467 (568)
T PRK05537        388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGI  467 (568)
T ss_pred             ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            3455789999999999999999999998873    2467888888643221     1  111    11344567788999


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      ||+|.++.....|..++++ +..+ .+++|+|++|.++|.+|+.
T Consensus       468 vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        468 AICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             EEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence            9999999999999999998 6655 3568899999999999973

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.86  E-value=1.8e-08  Score=98.06  Aligned_cols=108  Identities=19%  Similarity=0.274  Sum_probs=76.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC----------CC---------Cc-----HHHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG----------KS---------GT-----KVQCLTSASSALK   76 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~----------~~---------~~-----~~~~~~~~~~~L~   76 (611)
                      .+|+|-|+|.|||||+|+.|.+.+..+|.+++-|.+...          .+         +.     ....+..+..+.+
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~   81 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR   81 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999998888430          11         01     1123467777888


Q ss_pred             CCCcEEEecCCCCHHH-HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           77 KGKSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        77 ~Gk~VIID~tnl~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                      .|.+||+|........ ...+.++ ..++++.+|-+-||.+++.+|-+.|..+.
T Consensus        82 aG~~VIvD~v~~~~~~l~d~l~~~-L~~~~vl~VgV~Cpleil~~RE~~RgDR~  134 (174)
T PF07931_consen   82 AGNNVIVDDVFLGPRWLQDCLRRL-LAGLPVLFVGVRCPLEILERRERARGDRP  134 (174)
T ss_dssp             TT-EEEEEE--TTTHHHHHHHHHH-HTTS-EEEEEEE--HHHHHHHHHHHTSSS
T ss_pred             CCCCEEEecCccCcHHHHHHHHHH-hCCCceEEEEEECCHHHHHHHHHhcCCcc
Confidence            9999999987777654 4445354 23577889999999999999999999853

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK03839 putative kinase; Provisional

Probab=98.86  E-value=1.2e-08  Score=98.89  Aligned_cols=91  Identities=20%  Similarity=0.184  Sum_probs=59.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-CCC----c-----HHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-KSG----T-----KVQCLTSASSALKKGKSVFLDRCNLERE   91 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-~~~----~-----~~~~~~~~~~~L~~Gk~VIID~tnl~~~   91 (611)
                      .|+|+|+|||||||+++.|++.++.++  ++.|.+... ...    .     ...+...+.+. ..+..+|+|+..    
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~--id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vIidG~~----   74 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEY--VDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE-FKEKNVVLDGHL----   74 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE--EehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-ccCCCEEEEecc----
Confidence            589999999999999999999998544  666655311 100    0     11111222222 235679999932    


Q ss_pred             HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                        ..   +...+   .+|+|+++.+++.+|+..|..
T Consensus        75 --~~---l~~~~---~vi~L~~~~~~~~~Rl~~R~~  102 (180)
T PRK03839         75 --SH---LLPVD---YVIVLRAHPKIIKERLKERGY  102 (180)
T ss_pred             --cc---ccCCC---EEEEEECCHHHHHHHHHHcCC
Confidence              11   12223   378999999999999998864

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.86  E-value=8e-09  Score=102.58  Aligned_cols=136  Identities=21%  Similarity=0.326  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEe-ecchhcc---CCCCc-------HHHHHHHHHHHHHCCCcEEEecC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARI-CQDTINK---GKSGT-------KVQCLTSASSALKKGKSVFLDRC   86 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~----~~~~~I-s~D~i~~---~~~~~-------~~~~~~~~~~~L~~Gk~VIID~t   86 (611)
                      |||++|.|.|||||.|+.|.+.+.    ...+.| +...+.-   ..++.       +-.+...+.+.|..+..||+|.-
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Dsl   82 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDSL   82 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEecc
Confidence            799999999999999999877654    212333 3222221   11221       22355788899999999999999


Q ss_pred             CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (611)
Q Consensus        87 nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V  160 (611)
                      |+-+-.|-.+-.+ +.......+|+..+|.+.|++-+..|... +.  +..+.++++.+..+||+|.....||.-
T Consensus        83 NyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p-~e--~gy~~e~le~L~~RyEeP~s~NRWDsP  154 (281)
T KOG3062|consen   83 NYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDP-GE--DGYDDELLEALVQRYEEPNSRNRWDSP  154 (281)
T ss_pred             cccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCC-CC--CCCCHHHHHHHHHHhhCCCccccccCc
Confidence            9999999888777 77777778999999999999999888763 22  357889999999999999999999873

>PRK08356 hypothetical protein; Provisional

Probab=98.85  E-value=8.3e-08  Score=94.51  Aligned_cols=98  Identities=13%  Similarity=0.185  Sum_probs=63.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-----cc-------------------CCCCcHHH----------
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----NK-------------------GKSGTKVQ----------   66 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-----~~-------------------~~~~~~~~----------   66 (611)
                      .+|+|+|||||||||+|+.|. .++  +.+|+..+.     +.                   +.+..+..          
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~g--~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EKG--FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCC--CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            479999999999999999995 566  345654321     11                   01111111          


Q ss_pred             HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        67 ~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +.+.+.+.+.....+|||+. .+..++..+...  .+   .+|++++|.+++.+|+..|..
T Consensus        83 ~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~--~~---~vi~l~~~~~~~~~Rl~~R~~  137 (195)
T PRK08356         83 LIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM--GG---KVIYVEAKPEIRFERLRRRGA  137 (195)
T ss_pred             HHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhc--CC---EEEEEECCHHHHHHHHHhcCC
Confidence            11234445544557999996 666666665332  12   478999999999999999976

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=98.84  E-value=1.2e-09  Score=103.47  Aligned_cols=104  Identities=11%  Similarity=-0.006  Sum_probs=75.3

Q ss_pred             CchhhhhhHHHHHHhhcCCC--CCCCCCCCCCCCCCCcccccccccccccceeecccccccc--cccCCCCcchhhhccc
Q 007244          195 PDAKIQLGIMKFLKKVDAPS--NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE--EVKGTENPEVASVNQN  270 (611)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~  270 (611)
                      .....++.|+...+++-+..  ....+++     .  .|...++.|.++-|.+.|.|..+..  .....+...-.+|+..
T Consensus        40 I~~~aG~~l~~e~~~~~~~~g~~~~~G~a-----~--~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~  112 (147)
T cd02906          40 IHTFAGPQLRQACFELMTKQGREEPTGQA-----K--ITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDL  112 (147)
T ss_pred             HHHHhCHHHHHHHHHHHHhcCCCCCCCeE-----E--EEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHH
Confidence            34455677777665542211  1111222     1  4677889999999999999876321  2233445566678899


Q ss_pred             CCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 007244          271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (611)
Q Consensus       271 ~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~  305 (611)
                      +.+++++|||||+||||+||||.++||+|++++|+
T Consensus       113 a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~  147 (147)
T cd02906         113 AEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL  147 (147)
T ss_pred             HHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=98.83  E-value=4.9e-09  Score=110.93  Aligned_cols=144  Identities=27%  Similarity=0.398  Sum_probs=121.6

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRT   94 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~   94 (611)
                      +....+.+|+++|.||||||||+.......+  |.++++|.+     +.+..|.....++|..|+.||+|.|++..+.|.
T Consensus       264 ~~~~~~eiV~~vgfp~sGks~f~a~~~~~~~--y~~vn~d~l-----g~~~~C~~~~~e~l~~~~sVvidnt~pd~~sr~  336 (422)
T KOG2134|consen  264 KLDGHGEIVVAVGFPGSGKSTFAAKRVVPNG--YKIVNADTL-----GTPQNCLLANAEALKHGKSVVIDNTNPDAESRK  336 (422)
T ss_pred             ccCCCCcEEEEEecCCCCcchhhhhhcccCc--eeEeecccC-----CCchhhHHHHHHHhhcccEEeeCCCCcchHHHH
Confidence            3445569999999999999999999887766  778888886     688899999999999999999999999999999


Q ss_pred             HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244           95 DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (611)
Q Consensus        95 ~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~  166 (611)
                      .|++. ++....+..+.+..+.+.....+..|.-+.. .....++-++..+...|+.|.+.|||-.++.+.-.
T Consensus       337 ~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~-~~~~~~dm~~~~~k~kf~~ptl~egft~i~ev~f~  408 (422)
T KOG2134|consen  337 YYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDS-VKDSGSDMVFNSEKSKFQKPTLDEGFTNILEVPFK  408 (422)
T ss_pred             HHhhhHHHhCccceeeeeccHHHhhhccccchhhccc-hhcccccceeehhhccccCchHhhhhhhhhccchh
Confidence            99999 8888889999999999988888888875421 12245566677788889999999999988777644

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.83  E-value=3.9e-08  Score=113.43  Aligned_cols=105  Identities=28%  Similarity=0.313  Sum_probs=81.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCC----c---HH----HHHHHHHHHHHCCCcE
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----T---KV----QCLTSASSALKKGKSV   81 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~----~---~~----~~~~~~~~~L~~Gk~V   81 (611)
                      ...+|.+|+|+|+|||||||+|+.+.+.+.   ..+.+++.|.++.....    .   +.    .+...+...+..|..|
T Consensus       456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~V  535 (632)
T PRK05506        456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIV  535 (632)
T ss_pred             hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            345689999999999999999999998853   34678899998753211    1   11    1224555667889999


Q ss_pred             EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      |+|++++.+..|..++.+ ...  .+.+|||++|.++|.+|.
T Consensus       536 ivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        536 LVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             EEECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence            999999999999888777 443  457899999999999995

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.83  E-value=2.6e-08  Score=95.99  Aligned_cols=102  Identities=19%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC----CC---cHHHH----HHHHHHHHHCCCcEEE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK----SG---TKVQC----LTSASSALKKGKSVFL   83 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~----~~---~~~~~----~~~~~~~L~~Gk~VII   83 (611)
                      +++.+|+|+|+|||||||+|+.++..+.   ..+.+++.|.++...    ..   .+...    ...+...+..|..||+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4567999999999999999999988763   235668888765321    11   11111    1233334467888999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 007244           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      |+++.....|..+..+.   ..+.+|++++|.+++.+|.
T Consensus        82 ~~~~~~~~~~~~l~~~~---~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         82 SAISPYRETREEVRANI---GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             ecCCCCHHHHHHHHhhc---CCeEEEEEcCCHHHHHHhC
Confidence            99877777776665551   2356899999999999995

>PRK00625 shikimate kinase; Provisional

Probab=98.82  E-value=2.7e-08  Score=96.67  Aligned_cols=99  Identities=17%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---C--CCcHHH------------HHHHHHHHHHCCCcEEEe
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---K--SGTKVQ------------CLTSASSALKKGKSVFLD   84 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---~--~~~~~~------------~~~~~~~~L~~Gk~VIID   84 (611)
                      .|+|+|+|||||||+++.+++.++.++  ++.|.+-..   .  ..+..+            ....+.+.+..+..||..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~--id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~   79 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPF--FDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVAL   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCE--EEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEEC
Confidence            489999999999999999999998544  777765221   1  011111            112333444444334433


Q ss_pred             c--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        85 ~--tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      +  +....+.+..   ++..+.   +|+++.|.+++.+|+..|...
T Consensus        80 GGg~~~~~e~~~~---l~~~~~---Vv~L~~~~e~l~~Rl~~R~~~  119 (173)
T PRK00625         80 GGGTLMIEPSYAH---IRNRGL---LVLLSLPIATIYQRLQKRGLP  119 (173)
T ss_pred             CCCccCCHHHHHH---HhcCCE---EEEEECCHHHHHHHHhcCCCC
Confidence            3  2233333332   233444   899999999999999988653

>PLN02842 nucleotide kinase

Probab=98.80  E-value=8.1e-08  Score=106.87  Aligned_cols=100  Identities=25%  Similarity=0.348  Sum_probs=68.7

Q ss_pred             EEEcCCCCcHHHHHHHHHHHcCCCeEEeecch-hc------------------cCCCCcHHHHHHHHHHHHHC----CCc
Q 007244           24 IMVGAPGSGKSTFCEHVMRSSARPWARICQDT-IN------------------KGKSGTKVQCLTSASSALKK----GKS   80 (611)
Q Consensus        24 vLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~-i~------------------~~~~~~~~~~~~~~~~~L~~----Gk~   80 (611)
                      +|.|+|||||||+|+.|++.++  +.+|+.++ ++                  ++...+...+...+..++..    ...
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg--~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G   78 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG--LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKG   78 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCc
Confidence            5899999999999999999998  44565433 32                  22333334444555555532    245


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +|||+.+.+..+...+...  ...+-.+|+|++|.+++++|+..|..
T Consensus        79 ~ILDGfPRt~~Qa~~Le~~--~~~PDlVI~LDvpdevlleRl~gR~~  123 (505)
T PLN02842         79 WLLDGYPRSFAQAQSLEKL--KIRPDIFILLDVPDEILIDRCVGRRL  123 (505)
T ss_pred             EEEeCCCCcHHHHHHHHhc--CCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            9999988887766554333  11122489999999999999998864

>PRK13949 shikimate kinase; Provisional

Probab=98.79  E-value=3.8e-08  Score=95.12  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-----------Cc--HHHHHHHHHHHHHCCCcEEE-ecCC-
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-----------GT--KVQCLTSASSALKKGKSVFL-DRCN-   87 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-----------~~--~~~~~~~~~~~L~~Gk~VII-D~tn-   87 (611)
                      |+|+|+|||||||+++.|++.++.++  ++.|.+.....           +.  ..+....+...|.....+|| .+.. 
T Consensus         4 I~liG~~GsGKstl~~~La~~l~~~~--id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~   81 (169)
T PRK13949          4 IFLVGYMGAGKTTLGKALARELGLSF--IDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGA   81 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCe--ecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence            89999999999999999999999554  77776632111           11  01122233333443445566 4422 


Q ss_pred             -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                       .....+..+   +..+.   +|||++|.+++.+|+..+
T Consensus        82 ~~~~~~~~~l---~~~~~---vi~L~~~~~~~~~Ri~~~  114 (169)
T PRK13949         82 PCFFDNMELM---NASGT---TVYLKVSPEVLFVRLRLA  114 (169)
T ss_pred             cCCHHHHHHH---HhCCe---EEEEECCHHHHHHHHhcC
Confidence             233344433   34454   789999999999999754

>PRK06696 uridine kinase; Validated

Probab=98.78  E-value=5.5e-08  Score=97.82  Aligned_cols=103  Identities=20%  Similarity=0.221  Sum_probs=67.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCC-----------------CcHHHHHHHHHHHH-
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS-----------------GTKVQCLTSASSAL-   75 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~-----------------~~~~~~~~~~~~~L-   75 (611)
                      ...|.+|.+.|+|||||||||++|++.+   +..+.+++.|.+...+.                 ..+..+.+.+...+ 
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~   98 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG   98 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence            5678999999999999999999999987   44566778887742110                 01111111111111 


Q ss_pred             ---------------------------HCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 ---------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ---------------------------~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                                                 ..+..+|+|+..+.......+.+        ..||+++|.+++.+|+..|..
T Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d--------~~i~v~~~~e~~~~R~~~Rd~  169 (223)
T PRK06696         99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWD--------YKIFLDTDFEVSRRRGAKRDT  169 (223)
T ss_pred             CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCC--------EEEEEECCHHHHHHHHHHhhh
Confidence                                       12334778886554433333322        389999999999999999974

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=98.77  E-value=7.1e-09  Score=100.71  Aligned_cols=112  Identities=16%  Similarity=0.141  Sum_probs=80.2

Q ss_pred             CCchhhhhhHHHHHHhhc-CCCCCCCCCCCCCCCCCCcccccccccccccceeeccccccc-ccccCCCCcchhhhcccC
Q 007244          194 NPDAKIQLGIMKFLKKVD-APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNG  271 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~  271 (611)
                      ......++.+++.++..- +......|++     .  .|.+.++.|.++-|.+.|.|..+. ..........-.+|++.+
T Consensus        36 ai~~~~G~~l~~e~~~~~~~~g~~~~G~~-----~--~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a  108 (175)
T cd02907          36 AIVKAGGPEIQEESDEYVRKNGPVPTGEV-----V--VTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKA  108 (175)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCCCCCCcE-----E--EecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHH
Confidence            344555677777665441 1112222332     1  245567789999999999987632 122233344556788999


Q ss_pred             CCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244          272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (611)
Q Consensus       272 ~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~  312 (611)
                      ..++++|||||+||||+||||.++||+++++++.+|+.+++
T Consensus       109 ~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~  149 (175)
T cd02907         109 EELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKG  149 (175)
T ss_pred             HHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999853

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.77  E-value=1.5e-07  Score=93.45  Aligned_cols=119  Identities=25%  Similarity=0.352  Sum_probs=75.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhccCC------------C-----CcHHHHHHHHHHHHHCC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGK------------S-----GTKVQCLTSASSALKKG-   78 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is~D~i~~~~------------~-----~~~~~~~~~~~~~L~~G-   78 (611)
                      .+|.+|.|+|+|||||||+++.|.+.++ ..+..++.|.+....            +     ..+..+.+.+.. |..| 
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~   82 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKA-LKAGK   82 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHH-HHcCC
Confidence            5788999999999999999999999884 235567887763211            0     012222233322 2222 


Q ss_pred             ------------------------CcEEEecCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244           79 ------------------------KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (611)
Q Consensus        79 ------------------------k~VIID~tnl~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~  133 (611)
                                              ..+|+|+..+.. .....+.++        .|++++|.++++.|...|....+   
T Consensus        83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~--------~I~v~~~~~~~~~R~~~Rd~~~r---  151 (209)
T PRK05480         83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDI--------KIFVDTPLDIRLIRRLKRDVNER---  151 (209)
T ss_pred             ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhce--------eEEEeCChhHHHHHHHhhcchhc---
Confidence                                    137778755432 222233333        88999999999999999975332   


Q ss_pred             CCCHHHHHHHHHhhc
Q 007244          134 GGKAAAVVNRMLQKK  148 (611)
Q Consensus       134 ~~vpeevi~rm~~~~  148 (611)
                      +..+++++.++.++.
T Consensus       152 g~~~e~~~~~~~~~~  166 (209)
T PRK05480        152 GRSLESVINQYLSTV  166 (209)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            146677777666553

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=98.77  E-value=3e-09  Score=99.47  Aligned_cols=100  Identities=12%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             chhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCCCC
Q 007244          196 DAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSD  275 (611)
Q Consensus       196 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  275 (611)
                      ....++.+++.+++......  .+++.       .|.+.++.|.+.-|.+.|.|..+   ........-.+|++.+.+.+
T Consensus        38 ~~~~G~~l~~~~~~~~~~~~--~G~~~-------vT~~~~L~~k~IiH~~~p~~~~~---~~~~l~~~~~~~L~~a~~~~  105 (137)
T cd02903          38 LRKAGPELQKELDKAKLGQT--VGSVI-------VTKGGNLPCKYVYHVVLPNWSNG---ALKILKDIVSECLEKCEELS  105 (137)
T ss_pred             HHhccHHHHHHHHHHcCCCC--CCeEE-------EecCCCCCCCEEEEecCCCCCCc---hHHHHHHHHHHHHHHHHHCC
Confidence            34456778888877655443  12221       25566788999999999988862   11222223456789999999


Q ss_pred             CCccccccCccCCCCCChHHHHHHHHHHHHHH
Q 007244          276 VPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF  307 (611)
Q Consensus       276 ~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f  307 (611)
                      ++|||||+||||+||||.++||+++++++.+|
T Consensus       106 ~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f  137 (137)
T cd02903         106 YTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF  137 (137)
T ss_pred             CcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999876

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.75  E-value=9.1e-08  Score=89.44  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHHHHHHHHHHCCCcEEEecCC--
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDRCN--   87 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~~~~~~~L~~Gk~VIID~tn--   87 (611)
                      |+|+|+|||||||+|+.|++.++.+  .++.|.+.....+.             +......+...+..+..+||+...  
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~   79 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLP--FVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA   79 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC--EEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence            7899999999999999999999844  47777664221110             011112233344444566666432  


Q ss_pred             -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                       +....|+.+   ...+   .+||+++|.+++.+|+..|..+
T Consensus        80 i~~~~~~~~~---~~~~---~~i~l~~~~e~~~~R~~~r~~r  115 (154)
T cd00464          80 VLREENRRLL---LENG---IVVWLDASPEELLERLARDKTR  115 (154)
T ss_pred             cCcHHHHHHH---HcCC---eEEEEeCCHHHHHHHhccCCCC
Confidence             333332222   3333   4889999999999999998744

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK04040 adenylate kinase; Provisional

Probab=98.75  E-value=1.3e-07  Score=93.19  Aligned_cols=148  Identities=12%  Similarity=0.149  Sum_probs=78.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc------cCCCCcH-----------HHHHHHHH---HHHHCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSGTK-----------VQCLTSAS---SALKKG   78 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~------~~~~~~~-----------~~~~~~~~---~~L~~G   78 (611)
                      +|.+|+++|+|||||||+++.+.+.++..+.+++.+.+.      .+....+           .+....+.   +.+..+
T Consensus         1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~   80 (188)
T PRK04040          1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGE   80 (188)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcC
Confidence            467999999999999999999999983124456655441      1211111           11112222   223446


Q ss_pred             CcEEEecC--------CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh---cccccCCCCCCCHHHHHHHHHhh
Q 007244           79 KSVFLDRC--------NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK---RIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        79 k~VIID~t--------nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~---R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      ..+|+|+-        ++....+.-+   +.... -.+|++.+|.++.++|...   |.+     ..+.++.+-.++...
T Consensus        81 ~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~p-d~ii~l~a~p~~i~~Rrl~d~~R~R-----~~es~e~I~~~~~~a  151 (188)
T PRK04040         81 GPVIVDTHATIKTPAGYLPGLPEWVL---EELNP-DVIVLIEADPDEILMRRLRDETRRR-----DVETEEDIEEHQEMN  151 (188)
T ss_pred             CCEEEeeeeeeccCCCCcCCCCHHHH---hhcCC-CEEEEEeCCHHHHHHHHhcccccCC-----CCCCHHHHHHHHHHH
Confidence            67999991        1111111112   12222 2366777777777776653   222     114455555555443


Q ss_pred             ccC----CCccCCccEEEEcCChhhHHHHHHHh
Q 007244          148 KEL----PKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       148 ~e~----P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      ...    -.....|+.++++++ ..++.++..+
T Consensus       152 ~~~a~~~a~~~g~~~~iI~N~d-~~~e~a~~~i  183 (188)
T PRK04040        152 RAAAMAYAVLTGATVKIVENRE-GLLEEAAEEI  183 (188)
T ss_pred             HHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHH
Confidence            221    112344677776654 2266665543

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.74  E-value=4.7e-08  Score=94.07  Aligned_cols=138  Identities=16%  Similarity=0.236  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-C-------CCCcHHHHHHHHHHHHH---CCCcEEEecCCCCH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-G-------KSGTKVQCLTSASSALK---KGKSVFLDRCNLER   90 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-~-------~~~~~~~~~~~~~~~L~---~Gk~VIID~tnl~~   90 (611)
                      +|.++|.||+||||+|++|. .++..+.+++ |.+.. +       .+.+..--...++.++.   ...+.|+|.     
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~-el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~-----   74 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN-ELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDS-----   74 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH-HHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeec-----
Confidence            68999999999999999999 8885554444 22221 1       11111100133333443   457889998     


Q ss_pred             HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC-ChhhH
Q 007244           91 EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ-NENDV  169 (611)
Q Consensus        91 ~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~-~~~ev  169 (611)
                       ....++  ....   .+|+|.++.+++.+|+..|+.++......+..+++.-.+.     ...|.|+.++.++ .....
T Consensus        75 -H~~hl~--~~~d---lVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~-----EA~E~~~~v~evdtt~~s~  143 (180)
T COG1936          75 -HLSHLL--PDCD---LVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILI-----EAVERFEAVIEVDTTNRSP  143 (180)
T ss_pred             -hhhhcC--CCCC---EEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-----HHHHhcCceEEEECCCCCH
Confidence             333332  2122   3889999999999999999985432111122222222221     1235556666665 45566


Q ss_pred             HHHHHHhc
Q 007244          170 QAALDTYS  177 (611)
Q Consensus       170 d~av~~~~  177 (611)
                      ++++..+.
T Consensus       144 ee~~~~i~  151 (180)
T COG1936         144 EEVAEEII  151 (180)
T ss_pred             HHHHHHHH
Confidence            66665554

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.73  E-value=1.5e-07  Score=93.49  Aligned_cols=104  Identities=19%  Similarity=0.223  Sum_probs=71.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------C-------------CCc--H-----------H
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------K-------------SGT--K-----------V   65 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------~-------------~~~--~-----------~   65 (611)
                      .+.+|+++|+|||||||+|+.+++.++..+ ++..|.+++.       .             +..  .           .
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~-~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~   80 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI-VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR   80 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeE-EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence            467999999999999999999999987433 5666665320       0             000  0           0


Q ss_pred             ----HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccc
Q 007244           66 ----QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH  128 (611)
Q Consensus        66 ----~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~  128 (611)
                          .+...+.+.+.+|.++|+|++++....+...   ...+.  .++++. .+.+++.+|+..|...
T Consensus        81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~---~~~~v--~~i~l~v~d~e~lr~Rl~~R~~~  143 (197)
T PRK12339         81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN---RTNNI--RAFYLYIRDAELHRSRLADRINY  143 (197)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH---HhcCe--EEEEEEeCCHHHHHHHHHHHhhc
Confidence                0224567889999999999999888776432   22222  344444 3688888999999864

>PRK00431 RNase III inhibitor; Provisional

Probab=98.73  E-value=1.1e-08  Score=99.66  Aligned_cols=119  Identities=11%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  272 (611)
                      ......++.+++.+++.-.. .....+++     .  .|...++.|.+..|++.|.|..........+...-.+|+..+.
T Consensus        37 aI~~~~G~~l~~e~~~~~~~~~~l~~G~~-----~--~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~  109 (177)
T PRK00431         37 AIHRAAGPEILEECRELRQQQGPCPTGEA-----V--ITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAA  109 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCeE-----E--EecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHH
Confidence            34455567788877766322 22222333     1  2455678899999999999875322223344445567888899


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCe-EEEEe
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNA-RLVLV  319 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i-~iV~v  319 (611)
                      +.+++|||||+||||+||||.++||+++++++.+|+.....+ .++++
T Consensus       110 ~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~~v  157 (177)
T PRK00431        110 ELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVYFV  157 (177)
T ss_pred             HcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEEEE
Confidence            999999999999999999999999999999999998765543 34443

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.72  E-value=4.4e-08  Score=92.01  Aligned_cols=114  Identities=20%  Similarity=0.304  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----cC-------CCCcHHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KG-------KSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----~~-------~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      -|+++|-||+||||+|.++++.++..|.-|+ |.++     .+       .....+.+++.+..+|..|. .|||- +..
T Consensus         9 NILvtGTPG~GKstl~~~lae~~~~~~i~is-d~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg-~IVDy-HgC   85 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS-DLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG-NIVDY-HGC   85 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHHhCCceEehh-hHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC-cEEee-ccc
Confidence            4889999999999999999999996664443 2221     11       12234557788888888854 55665 333


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      --...+|+++        +|+|.+|.+++.+|+..|+.+..........+++--.++
T Consensus        86 d~Fperwfdl--------VvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~e  134 (176)
T KOG3347|consen   86 DFFPERWFDL--------VVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLE  134 (176)
T ss_pred             CccchhheeE--------EEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHH
Confidence            3356677666        899999999999999999986533333334444444443

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.72  E-value=8.3e-08  Score=94.69  Aligned_cols=127  Identities=16%  Similarity=0.092  Sum_probs=75.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC--------------C----------CcH-----------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------S----------GTK-----------   64 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~--------------~----------~~~-----------   64 (611)
                      +.+|.|+|++||||||+++.+.+ ++  +.+++.|.+....              +          ..+           
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~   78 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDP   78 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCH
Confidence            46899999999999999999887 77  5668877662100              0          000           


Q ss_pred             -----------HHHHHHHHHHHHCC---CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           65 -----------VQCLTSASSALKKG---KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        65 -----------~~~~~~~~~~L~~G---k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                                 ..+...+.+.+...   ..+|+|..-+.......+     .+   .+|++++|.++..+|+.+|..   
T Consensus        79 ~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~-----~D---~vi~V~a~~e~~~~Rl~~R~~---  147 (194)
T PRK00081         79 EARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL-----VD---RVLVVDAPPETQLERLMARDG---  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh-----CC---eEEEEECCHHHHHHHHHHcCC---
Confidence                       01113333334333   568888844333222222     22   388999999999999999864   


Q ss_pred             CCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       131 ~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                          ...++...|+..++.........+.|+.++
T Consensus       148 ----~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~  177 (194)
T PRK00081        148 ----LSEEEAEAIIASQMPREEKLARADDVIDNN  177 (194)
T ss_pred             ----CCHHHHHHHHHHhCCHHHHHHhCCEEEECC
Confidence                344566666665542222223334454443

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.68  E-value=1e-07  Score=88.07  Aligned_cols=94  Identities=19%  Similarity=0.300  Sum_probs=60.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----------cHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------TKVQCLTSASSALKKGKSVFLDRCNLERE   91 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----------~~~~~~~~~~~~L~~Gk~VIID~tnl~~~   91 (611)
                      +|+|+|+|||||||+|++|++.++.++  ++.|.+....+.          ............+..+..+|+|+...   
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~--~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~---   75 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPY--LDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDI---   75 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCce--eccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeee---
Confidence            589999999999999999999998555  666644321111          11111222333355566899999432   


Q ss_pred             HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                         .+. +  .+....+|++..|.+++.+|+.+|.
T Consensus        76 ---~~~-~--~~~~~~~i~l~~~~~~r~~R~~~r~  104 (147)
T cd02020          76 ---GTV-V--FPDADLKIFLTASPEVRAKRRAKQL  104 (147)
T ss_pred             ---eeE-E--cCCCCEEEEEECCHHHHHHHHHHHH
Confidence               111 1  1112247899999999999999964

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=98.67  E-value=9.3e-09  Score=100.06  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             ccccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHh
Q 007244          231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK  310 (611)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~  310 (611)
                      |...+++...+-|.+.+.|..++....+.+-...-.++..+.+++++|||||+||||+||||.+++++|+++++.+|+..
T Consensus        70 t~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~  149 (179)
T COG2110          70 TEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE  149 (179)
T ss_pred             ccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc
Confidence            55567778899999999887765555556666777788999999999999999999999999999999999999999975

>PRK04182 cytidylate kinase; Provisional

Probab=98.67  E-value=3.3e-07  Score=87.80  Aligned_cols=94  Identities=18%  Similarity=0.258  Sum_probs=59.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc-----CCC----------Cc-HHHHHHHHHHHHH-CCCcEEE
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-----GKS----------GT-KVQCLTSASSALK-KGKSVFL   83 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~-----~~~----------~~-~~~~~~~~~~~L~-~Gk~VII   83 (611)
                      +|+|+|+|||||||+|+.|++.++.+  +++.|.+ +.     +..          .. ...........+. .+.++|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~--~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi   79 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLK--HVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVL   79 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc--EecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence            69999999999999999999999844  4764432 11     100          00 0111122222333 6678899


Q ss_pred             ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      |+...      .+  + +..  ...+|+|++|.+++.+|+..|..
T Consensus        80 ~g~~~------~~--~~~~~--~~~~V~l~a~~e~~~~Rl~~r~~  114 (180)
T PRK04182         80 EGRLA------GW--MAKDY--ADLKIWLKAPLEVRAERIAEREG  114 (180)
T ss_pred             EEeec------ce--EecCC--CCEEEEEECCHHHHHHHHHhccC
Confidence            88321      11  2 221  23578999999999999998864

>PRK13975 thymidylate kinase; Provisional

Probab=98.65  E-value=4.3e-07  Score=88.72  Aligned_cols=107  Identities=21%  Similarity=0.263  Sum_probs=61.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-----c----cCCCCc----------HHHHHHHHHHHHHCCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----N----KGKSGT----------KVQCLTSASSALKKGK   79 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-----~----~~~~~~----------~~~~~~~~~~~L~~Gk   79 (611)
                      |+.+|++.|++||||||+++.|++.++..+.....|..     +    .+....          +.+.+..+...+.. .
T Consensus         1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~   79 (196)
T PRK13975          1 MNKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-R   79 (196)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            45799999999999999999999998743322222211     1    110110          01112334444444 6


Q ss_pred             cEEEecCCCCHHHH-------HHHH-Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           80 SVFLDRCNLEREQR-------TDFV-KL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        80 ~VIID~tnl~~~~R-------~~~~-~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .||+|...+.....       ..+. .+ .....+-.+|+|++|.+++.+|+..|.
T Consensus        80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~  135 (196)
T PRK13975         80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD  135 (196)
T ss_pred             EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence            78999643321000       0111 11 111112258899999999999999886

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.64  E-value=2.6e-07  Score=87.85  Aligned_cols=95  Identities=21%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc------CCCC-----------cHHHHH-HHHHHHHHCCCcEEE
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSG-----------TKVQCL-TSASSALKKGKSVFL   83 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~------~~~~-----------~~~~~~-~~~~~~L~~Gk~VII   83 (611)
                      +|++.|+|||||||+|+.+++.++.+  +++.|.+..      +...           ...... ..+......+..+||
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi   79 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLK--LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVL   79 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc--eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEE
Confidence            79999999999999999999998844  477654321      1000           001111 223333336678999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      |+....      |. ++.. .. ..|++++|.+++.+|+.+|..
T Consensus        80 ~g~~~~------~~-~~~~-~d-~~v~v~a~~~~r~~R~~~R~~  114 (171)
T TIGR02173        80 ESRLAG------WI-VREY-AD-VKIWLKAPLEVRARRIAKREG  114 (171)
T ss_pred             Eecccc------ee-ecCC-cC-EEEEEECCHHHHHHHHHHccC
Confidence            984321      10 1111 11 478999999999999999975

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.64  E-value=2.9e-07  Score=87.69  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC------C-----------CCcHHHHHHHHHHHHHCCCcEEEe
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------K-----------SGTKVQCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~------~-----------~~~~~~~~~~~~~~L~~Gk~VIID   84 (611)
                      +|.+.|+|||||||+|+.|++.++  +.+++...++.+      .           ....+...+.-...+....++|++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVle   79 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG--LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLE   79 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC--CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEh
Confidence            689999999999999999999999  445775444321      0           011222223333344447889999


Q ss_pred             cCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +      .-..|+-.   .+.-..|||..|.++..+|+.+|..
T Consensus        80 g------rLA~Wi~k---~~adlkI~L~Apl~vRa~Ria~REg  113 (179)
T COG1102          80 G------RLAGWIVR---EYADLKIWLKAPLEVRAERIAKREG  113 (179)
T ss_pred             h------hhHHHHhc---cccceEEEEeCcHHHHHHHHHHhcC
Confidence            8      44555322   2333478999999999999999986

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.64  E-value=9.3e-08  Score=85.96  Aligned_cols=94  Identities=27%  Similarity=0.394  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c-cCCC----C--cH-H---HHHHHHHHHHH---CCCcEEEecC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-KGKS----G--TK-V---QCLTSASSALK---KGKSVFLDRC   86 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~-~~~~----~--~~-~---~~~~~~~~~L~---~Gk~VIID~t   86 (611)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|.+ . .++.    .  .. .   +........+.   .+..+|+|+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~   78 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG--FPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS   78 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT--CEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC--CeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence            589999999999999999999998  556777774 1 1111    1  11 1   11223333332   4567999994


Q ss_pred             CCCHHH--HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           87 NLEREQ--RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        87 nl~~~~--R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .. ...  +....        ..+|++..|.+++..|..+|.
T Consensus        79 ~~-~~~~~~~~~~--------~~~i~l~~~~~~~~~~~~~R~  111 (121)
T PF13207_consen   79 YE-SEMEIRLPEF--------DHVIYLDAPDEECRERRLKRR  111 (121)
T ss_dssp             SC-HCCHSCCHHG--------GCEEEEEEEEHHHHHHHHHHH
T ss_pred             Cc-cchhhhhhcC--------CEEEEEECCCHHHHHHHHHHH
Confidence            33 211  11111        136677777765555555553

...

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.62  E-value=2.8e-07  Score=104.62  Aligned_cols=147  Identities=13%  Similarity=0.159  Sum_probs=86.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-cH------------HHHHHHHHHHHHCCCcEEEe
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-~~------------~~~~~~~~~~L~~Gk~VIID   84 (611)
                      .....|+|+|+|||||||+++.|++.++.+|  ++.|.+-....+ +.            .++...+.+.+......||.
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~f--iD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs   81 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPF--ADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFS   81 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCE--EEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            3456799999999999999999999999666  776665322111 00            11112333333323445554


Q ss_pred             c---CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244           85 R---CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (611)
Q Consensus        85 ~---tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V  160 (611)
                      .   ....++.|..+..+ +..+.   +|||+.|.+++.+|+..+..+|.. .. .+.+.+.+++++. .|.+.+ +.++
T Consensus        82 ~GGG~v~~~~n~~~L~~~~~~~g~---vv~L~~~~~~l~~Rl~~~~~RPll-~~-~~~~~~~~l~~~R-~~~Y~~-~Ad~  154 (542)
T PRK14021         82 LGGGAPMTPSTQHALASYIAHGGR---VVYLDADPKEAMERANRGGGRPML-NG-DANKRWKKLFKQR-DPVFRQ-VANV  154 (542)
T ss_pred             CCCchhCCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHhCCCCCCCC-CC-CcHHHHHHHHHHH-HHHHHh-hCCE
Confidence            3   34566677766555 56664   899999999999999766554432 11 2344555555543 333333 3445


Q ss_pred             EEcCChhhHHHHH
Q 007244          161 TLCQNENDVQAAL  173 (611)
Q Consensus       161 ~vv~~~~evd~av  173 (611)
                      .+..+...+++++
T Consensus       155 ~i~~~~~~~~~~~  167 (542)
T PRK14021        155 HVHTRGLTPQAAA  167 (542)
T ss_pred             EEECCCCCHHHHH
Confidence            4444333444433

>PTZ00301 uridine kinase; Provisional

Probab=98.62  E-value=6.3e-07  Score=89.80  Aligned_cols=116  Identities=21%  Similarity=0.302  Sum_probs=71.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc----CCC-eEEeecchhccCC------------CC-----cHHHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARP-WARICQDTINKGK------------SG-----TKVQCLTSASSALK   76 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~----~~~-~~~Is~D~i~~~~------------~~-----~~~~~~~~~~~~L~   76 (611)
                      ++.||.+.|+|||||||||++|.+.+    +.. ...++.|.+....            +.     .++.+.+.+ ..|+
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~   80 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELK   80 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHH
Confidence            45799999999999999999887665    222 3467888774221            00     122222333 4444


Q ss_pred             CCC-------------------------cEEEecCCCC-HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           77 KGK-------------------------SVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        77 ~Gk-------------------------~VIID~tnl~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                      .|+                         .+|+|+.... ......+     .+.   .||+++|.++++.|...|...++
T Consensus        81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l-----~D~---~ifvd~~~d~~~~Rr~~Rd~~~r  152 (210)
T PTZ00301         81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNE-----MDC---LIFVDTPLDICLIRRAKRDMRER  152 (210)
T ss_pred             cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHh-----CCE---EEEEeCChhHHHHHHHhhhHHhc
Confidence            431                         2577885442 1222222     222   68999999999999999986543


Q ss_pred             CCCCCCHHHHHHHHHh
Q 007244          131 NLQGGKAAAVVNRMLQ  146 (611)
Q Consensus       131 ~~~~~vpeevi~rm~~  146 (611)
                      +   ..+++++.+...
T Consensus       153 G---~~~e~v~~~~~~  165 (210)
T PTZ00301        153 G---RTFESVIEQYEA  165 (210)
T ss_pred             C---CCHHHHHHHHHH
Confidence            2   456667665544

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.61  E-value=4.1e-07  Score=87.19  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----------cHH---HHHHHHHHHHHCCCcEEEecC-
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------TKV---QCLTSASSALKKGKSVFLDRC-   86 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----------~~~---~~~~~~~~~L~~Gk~VIID~t-   86 (611)
                      ..|+|+|+|||||||+++.|++.++.++  ++.|.+.....+          .+.   +....+.+.+..+ .+||... 
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~--~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~-~~vi~~gg   79 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRF--VDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAP-STVIATGG   79 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCE--EEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCC-CeEEECCC
Confidence            4588899999999999999999998554  777766422111          111   1112233445443 3455432 


Q ss_pred             --CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        87 --nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                        .+....+..+   +..+.   +|||++|.+++.+|+..|..
T Consensus        80 g~vl~~~~~~~l---~~~~~---~v~l~~~~~~~~~Rl~~r~~  116 (171)
T PRK03731         80 GIILTEENRHFM---RNNGI---VIYLCAPVSVLANRLEANPE  116 (171)
T ss_pred             CccCCHHHHHHH---HhCCE---EEEEECCHHHHHHHHccccc
Confidence              2344444433   33443   88999999999999988753

>PRK08233 hypothetical protein; Provisional

Probab=98.60  E-value=2.5e-07  Score=88.87  Aligned_cols=98  Identities=13%  Similarity=0.254  Sum_probs=58.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC--------CC-----C---cHHHHHHHHHHHHHCC--CcE
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------KS-----G---TKVQCLTSASSALKKG--KSV   81 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~--------~~-----~---~~~~~~~~~~~~L~~G--k~V   81 (611)
                      +.+|++.|+|||||||+|+.|++.++.. ..+..|.++..        +.     .   ....+...+...+...  ..+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v   81 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNS-KALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI   81 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCC-ceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence            5789999999999999999999988632 12223333210        00     0   1112234444444333  335


Q ss_pred             EEecCCCCH--HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           82 FLDRCNLER--EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        82 IID~tnl~~--~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      |+|+ ++..  .....+.     +   .+|||++|.+++++|..+|..
T Consensus        82 ivd~-~~~~~~~~~~~~~-----d---~~i~l~~~~~~~~~R~~~R~~  120 (182)
T PRK08233         82 IVDY-PFAYLNSEMRQFI-----D---VTIFIDTPLDIAMARRILRDF  120 (182)
T ss_pred             EEee-ehhhccHHHHHHc-----C---EEEEEcCCHHHHHHHHHHHHh
Confidence            6675 3221  1112222     2   389999999999999888864

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.59  E-value=2.9e-07  Score=91.07  Aligned_cols=111  Identities=18%  Similarity=0.099  Sum_probs=68.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC----------------------C---cH-----------
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------------------G---TK-----------   64 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~----------------------~---~~-----------   64 (611)
                      .+|.|+|++||||||+++.+.+.++  +.+++.|.+.....                      +   .+           
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g--~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~   79 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKG--IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDP   79 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC--CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCH
Confidence            4799999999999999999998877  55688777631100                      1   00           


Q ss_pred             ---H--------HHHHHHHHHHHC---CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           65 ---V--------QCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        65 ---~--------~~~~~~~~~L~~---Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                         .        .+...+.+.+..   ...+|+|..-+.......+     .+.   +|++++|.+++.+|+.+|..   
T Consensus        80 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~-----~D~---ii~V~a~~e~r~~Rl~~R~g---  148 (195)
T PRK14730         80 EERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDL-----CSE---IWVVDCSPEQQLQRLIKRDG---  148 (195)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhC-----CCE---EEEEECCHHHHHHHHHHcCC---
Confidence               0        011222222322   2356677643333221111     222   88899999999999999964   


Q ss_pred             CCCCCCHHHHHHHHHhhc
Q 007244          131 NLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus       131 ~~~~~vpeevi~rm~~~~  148 (611)
                          ...+++..|+..++
T Consensus       149 ----~s~e~~~~ri~~Q~  162 (195)
T PRK14730        149 ----LTEEEAEARINAQW  162 (195)
T ss_pred             ----CCHHHHHHHHHhCC
Confidence                34567777776654

>TIGR00152 dephospho-CoA kinase

Probab=98.59  E-value=2.5e-07  Score=90.49  Aligned_cols=126  Identities=19%  Similarity=0.197  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCC----------CcHH-
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKS----------GTKV-   65 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~----------~~~~-   65 (611)
                      +|.|+|.+||||||+++.+.+..+  +.+++.|.+..                         |..          .... 
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~   78 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYH--FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEE   78 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC--CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHH
Confidence            489999999999999999988765  55688777621                         100          0000 


Q ss_pred             ----------HHHHHHHHHHH----CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 007244           66 ----------QCLTSASSALK----KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (611)
Q Consensus        66 ----------~~~~~~~~~L~----~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~  131 (611)
                                .+...+.+.+.    .|..+|++...+.......+     .+   .++++++|.+++.+|+.+|..    
T Consensus        79 ~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-----~D---~vv~V~~~~~~~~~Rl~~R~~----  146 (188)
T TIGR00152        79 LKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-----CD---RVIVVDVSPQLQLERLMQRDN----  146 (188)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-----CC---EEEEEECCHHHHHHHHHHcCC----
Confidence                      01122222222    34467777733322211122     22   278999999999999999975    


Q ss_pred             CCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       132 ~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                         ...+++..|+..+..........|.++.++
T Consensus       147 ---~s~~~~~~r~~~q~~~~~~~~~ad~vI~N~  176 (188)
T TIGR00152       147 ---LTEEEVQKRLASQMDIEERLARADDVIDNS  176 (188)
T ss_pred             ---CCHHHHHHHHHhcCCHHHHHHhCCEEEECC
Confidence               345677777777642222233456666554

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PHA02595 tk

Probab=98.59  E-value=3.2e-07  Score=87.66  Aligned_cols=115  Identities=16%  Similarity=0.070  Sum_probs=82.6

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh--cCCCCCCCEEEecCCCCCCCC
Q 007244          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER--AKSLYPGNSVIVPLPSTSPLC  421 (611)
Q Consensus       344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~--~~~~~~G~~v~T~l~~~~~~~  421 (611)
                      .+.+++|||++...   ...++|||++|..+. +|+|||.+|.++.+ ++.++.++.  .+..+.|++.+.+..      
T Consensus         2 ~i~~v~GDl~~~~~---~~~~~i~h~~N~~g~-mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~~------   70 (154)
T PHA02595          2 IVDYIKGDIVALFL---QGKGNIAHGCNCFHT-MGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEKY------   70 (154)
T ss_pred             eEEEECCccccccc---CCCceEEEeeCCCCc-CChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEee------
Confidence            47889999987731   125699999999999 99999999999995 555555544  244678999774311      


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH------HHhhccccCCC
Q 007244          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF------LSIVRSQEKLS  478 (611)
Q Consensus       422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a------~siafp~~~~~  478 (611)
                      ...+-++|+|..+- |++..+        -.-+.|++|++++.+.+      .|||+|.||.+
T Consensus        71 ~~~~~~~I~nl~tq-~~~~~~--------~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~G  124 (154)
T PHA02595         71 VGGHKAYCFNLYTQ-FDPGPN--------LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAG  124 (154)
T ss_pred             ccCCCEEEEEEecc-CCCCCC--------CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCcc
Confidence            22334799999775 655432        12456888888877765      58999999955

4 hypothetical protein; Provisional

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.58  E-value=7.6e-07  Score=89.18  Aligned_cols=117  Identities=22%  Similarity=0.291  Sum_probs=77.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecchhccCCCC-----------------cHHHHHHHHHHHHHCC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGKSG-----------------TKVQCLTSASSALKKG-   78 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is~D~i~~~~~~-----------------~~~~~~~~~~~~L~~G-   78 (611)
                      .++.+|.+.|+|||||||+|+.|...++. ....|++|.+..+...                 .++-+.+. ...|.+| 
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~-L~~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEH-LKDLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHH-HHHHHcCC
Confidence            56789999999999999999999999983 3457899988532110                 11112222 2233333 


Q ss_pred             ------------------------CcEEEecCCCCHH-HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244           79 ------------------------KSVFLDRCNLERE-QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (611)
Q Consensus        79 ------------------------k~VIID~tnl~~~-~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~  133 (611)
                                              ..|||++...... ....+.++        -||+++|.++++.|...|...+++  
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~--------kIfvdtd~D~RliRri~RD~~~rg--  154 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDL--------KIFVDTDADVRLIRRIKRDVQERG--  154 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCE--------EEEEeCCccHHHHHHHHHHHHHhC--
Confidence                                    2367777554333 22333333        789999999999999999875443  


Q ss_pred             CCCHHHHHHHHHh
Q 007244          134 GGKAAAVVNRMLQ  146 (611)
Q Consensus       134 ~~vpeevi~rm~~  146 (611)
                       ..++.++..+..
T Consensus       155 -~~~e~vi~qy~~  166 (218)
T COG0572         155 -RDLESVIEQYVK  166 (218)
T ss_pred             -CCHHHHHHHHHH
Confidence             567777776653

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.57  E-value=1.3e-06  Score=84.63  Aligned_cols=150  Identities=17%  Similarity=0.181  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec-------chhc---cCC----CCcHHH-H----------HHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN---KGK----SGTKVQ-C----------LTSASS   73 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~-------D~i~---~~~----~~~~~~-~----------~~~~~~   73 (611)
                      +|+|.|++||||||+++.|++.+   +..+..+..       +.++   ...    ...... +          ...+..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   81 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKP   81 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999877   322222211       1111   111    111111 0          122344


Q ss_pred             HHHCCCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244           74 ALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeev  140 (611)
                      .+..|..||+|...+..            .....+..+ .....+-.+|+|++|.+++.+|+.+|......  .....+.
T Consensus        82 ~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~~  159 (200)
T cd01672          82 ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--EQEGLEF  159 (200)
T ss_pred             HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--hhhhHHH
Confidence            56788899999644332            122222223 33223446899999999999999999763210  0122344


Q ss_pred             HHHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244          141 VNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       141 i~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~  174 (611)
                      +.++...+.......+. .+++++....++++..
T Consensus       160 ~~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~  192 (200)
T cd01672         160 HERVREGYLELAAQEPE-RIIVIDASQPLEEVLA  192 (200)
T ss_pred             HHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence            44444444322222222 3455555555555544

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.57  E-value=2.2e-07  Score=90.29  Aligned_cols=125  Identities=22%  Similarity=0.205  Sum_probs=74.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC--------------CC----------cH-------------
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------SG----------TK-------------   64 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~--------------~~----------~~-------------   64 (611)
                      +|.|+|.|||||||+++.+.+ ++  +.+++.|.+....              ++          .+             
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   77 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LG--IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK   77 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CC--CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence            489999999999999999987 77  5568877762110              00          00             


Q ss_pred             ---------HHHHHHHHHHHHC---CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 007244           65 ---------VQCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (611)
Q Consensus        65 ---------~~~~~~~~~~L~~---Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~  132 (611)
                               ..+...+.+.+..   ...+|+|..-+.......+.     +   .++++++|.++..+|+..|..     
T Consensus        78 ~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~-----D---~vv~V~a~~~~ri~Rl~~Rd~-----  144 (179)
T cd02022          78 RKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLV-----D---RVIVVDAPPEIQIERLMKRDG-----  144 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhC-----C---eEEEEECCHHHHHHHHHHcCC-----
Confidence                     0011222222322   24577777333322222222     2   288999999999999999975     


Q ss_pred             CCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       133 ~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                        ...+++..|+..++..-......|.|+.+.
T Consensus       145 --~s~~~~~~r~~~Q~~~~~~~~~aD~vI~N~  174 (179)
T cd02022         145 --LSEEEAEARIASQMPLEEKRARADFVIDNS  174 (179)
T ss_pred             --CCHHHHHHHHHhcCCHHHHHHhCCEEEECc
Confidence              355777788877653222234445555543

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.56  E-value=5.4e-07  Score=95.34  Aligned_cols=152  Identities=14%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc----------HH---HH-HHHHHHHHHCCCc
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT----------KV---QC-LTSASSALKKGKS   80 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~----------~~---~~-~~~~~~~L~~Gk~   80 (611)
                      ...+++..|+|+|+|||||||+++.+++.++.++  ++.|.......+.          ..   .. ...+.+.+.....
T Consensus       128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~--id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~  205 (309)
T PRK08154        128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPF--VELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEE  205 (309)
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--EeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCC
Confidence            3556778999999999999999999999999666  5555443211110          00   11 1233444444444


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V  160 (611)
                      +||............+..+...   ..+|||++|.+++.+|+.+|.............+.++.+.+... |.+ +.++ +
T Consensus       206 ~VI~~Ggg~v~~~~~~~~l~~~---~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~-~~y-~~ad-~  279 (309)
T PRK08154        206 MVLATGGGIVSEPATFDLLLSH---CYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASRE-PLY-ARAD-A  279 (309)
T ss_pred             EEEECCCchhCCHHHHHHHHhC---CEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH-HHH-HhCC-E
Confidence            5555433211111111123122   24889999999999999988642111111233345555555443 222 2233 4


Q ss_pred             EEcCChhhHHHHHH
Q 007244          161 TLCQNENDVQAALD  174 (611)
Q Consensus       161 ~vv~~~~evd~av~  174 (611)
                      ++..+...++++++
T Consensus       280 ~I~t~~~s~ee~~~  293 (309)
T PRK08154        280 VVDTSGLTVAQSLA  293 (309)
T ss_pred             EEECCCCCHHHHHH
Confidence            44444434454444

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.55  E-value=1e-06  Score=86.39  Aligned_cols=153  Identities=17%  Similarity=0.134  Sum_probs=81.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec------------chhc--cCCCCcHHH-----------HHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ------------DTIN--KGKSGTKVQ-----------CLTSAS   72 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~------------D~i~--~~~~~~~~~-----------~~~~~~   72 (611)
                      +.+|++.|++||||||+++.|.+.+..  ..+++..            +.+.  ......+..           ....+.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~   82 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK   82 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999987531  1112211            0111  111111111           113344


Q ss_pred             HHHHCCCcEEEecCCCCHHHH------------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHH
Q 007244           73 SALKKGKSVFLDRCNLEREQR------------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA  139 (611)
Q Consensus        73 ~~L~~Gk~VIID~tnl~~~~R------------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpee  139 (611)
                      ..+..|..||+|...+..-..            ..+... .....+-.+|+|++|.+++.+|+.+|.....  ....+.+
T Consensus        83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~--~~~~~~~  160 (205)
T PRK00698         83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDR--IEQEGLD  160 (205)
T ss_pred             HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch--hhhhhHH
Confidence            567789999999643332111            111112 1112233689999999999999999974210  0011234


Q ss_pred             HHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       140 vi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      ...++...++.......+ .+++++....++++..+
T Consensus       161 ~~~~~~~~y~~~~~~~~~-~~~~Id~~~~~e~v~~~  195 (205)
T PRK00698        161 FFERVREGYLELAEKEPE-RIVVIDASQSLEEVHED  195 (205)
T ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHHH
Confidence            455555444333222222 34445544555555443

>PRK12338 hypothetical protein; Provisional

Probab=98.55  E-value=7.4e-07  Score=94.29  Aligned_cols=106  Identities=18%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------CC------C---cH------------------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------KS------G---TK------------------   64 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------~~------~---~~------------------   64 (611)
                      .|.+|++.|+|||||||+|+.+++.++..+ .++.|.++.-       +.      .   .|                  
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~-~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~   81 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKH-LIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA   81 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeE-EccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence            478999999999999999999999998433 2355555310       00      0   00                  


Q ss_pred             ---HHH---H----HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           65 ---VQC---L----TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        65 ---~~~---~----~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         .++   .    ..+.+++..|.++||++..+.+.......  ......+.++++-.+.++.++|...|..
T Consensus        82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~--~~~~~~v~~~vl~~dee~h~~Rf~~R~~  152 (319)
T PRK12338         82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ--FEENASIHFFILSADEEVHKERFVKRAM  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh--hcccCceEEEEEECCHHHHHHHHHHhhh
Confidence               011   1    34556678899999999998876655321  1122346677777899999999999874

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.55  E-value=2.3e-07  Score=88.22  Aligned_cols=126  Identities=14%  Similarity=0.153  Sum_probs=91.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---CCCc------HHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSGT------KVQCLTSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---~~~~------~~~~~~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      ||++.++.|+.||||||+.....-.+...+.+|+.|.+..+   +.-.      .......+...++.|..+..+.|.-.
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~   80 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG   80 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence            68899999999999999988876666556778999998522   1111      11234666778889999999887666


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244           90 REQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      +..++....-+..|+.+...|+-. +.+...+|.+.|-...|+   ++|++.+++-+.+
T Consensus        81 ~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH---~IpED~Ir~RY~r  136 (187)
T COG4185          81 PSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH---DIPEDKIRRRYRR  136 (187)
T ss_pred             chHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHH
Confidence            555554433377888776666655 457999999999776665   7899888776654

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.54  E-value=2.6e-06  Score=81.25  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=91.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC-C-e----EEeecchh------------------ccC-CCCcHHH---HH--
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-P-W----ARICQDTI------------------NKG-KSGTKVQ---CL--   68 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~-~-~----~~Is~D~i------------------~~~-~~~~~~~---~~--   68 (611)
                      +.++|+++||+|+||.|+.......+.. + +    .+|+++.-                  ..+ ....|+.   ++  
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            6889999999999999999887776652 1 1    12332111                  011 1113321   11  


Q ss_pred             -HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           69 -TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        69 -~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                       ..+-..|..|..||+.+      -|.-+-.+ +.+. .+.+|.+..+.+++.+|+.+|++       +..+++..|+.+
T Consensus        84 p~eId~wl~~G~vvl~Ng------SRa~Lp~arrry~-~Llvv~ita~p~VLaqRL~~RGR-------Es~eeI~aRL~R  149 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNG------SRAVLPQARRRYP-QLLVVCITASPEVLAQRLAERGR-------ESREEILARLAR  149 (192)
T ss_pred             chhHHHHHhCCCEEEEec------cHhhhHHHHHhhh-cceeEEEecCHHHHHHHHHHhcc-------CCHHHHHHHHHh
Confidence             67788999999999987      23333333 3333 45688889999999999999998       678899888887


Q ss_pred             hccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          147 KKELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       147 ~~e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      .-.  ....+++ |+.+++..+++.+.+.+
T Consensus       150 ~a~--~~~~~~d-v~~idNsG~l~~ag~~l  176 (192)
T COG3709         150 AAR--YTAGPGD-VTTIDNSGELEDAGERL  176 (192)
T ss_pred             hcc--cccCCCC-eEEEcCCCcHHHHHHHH
Confidence            542  2223444 55555666666665543

>PRK13973 thymidylate kinase; Provisional

Probab=98.51  E-value=2.7e-06  Score=85.08  Aligned_cols=108  Identities=20%  Similarity=0.241  Sum_probs=67.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEee-------cchhcc-------CCCCcHH-----------HHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC-------QDTINK-------GKSGTKV-----------QCLTSA   71 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is-------~D~i~~-------~~~~~~~-----------~~~~~~   71 (611)
                      +.+|++-|++||||||+++.|.+.+   +..+..+.       .+.+++       .......           .....+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i   82 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI   82 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999887   43332221       122221       1111111           112456


Q ss_pred             HHHHHCCCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           72 SSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..+|..|..||.|...++.            .....+... .....+=.+|+|++|.+++.+|+.+|..
T Consensus        83 ~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~  151 (213)
T PRK13973         83 RPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG  151 (213)
T ss_pred             HHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence            7788999999999955332            122222222 1112234689999999999999999964

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.50  E-value=5.3e-07  Score=89.36  Aligned_cols=125  Identities=20%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC--------------CC--------Cc--H-------------
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------KS--------GT--K-------------   64 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~--------------~~--------~~--~-------------   64 (611)
                      +|.++|++||||||+++.+. ..+  +.+++.|.+...              .+        +.  +             
T Consensus         1 ~i~itG~~gsGKst~~~~l~-~~g--~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~   77 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILE-ELG--AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK   77 (196)
T ss_pred             CEEEECCCCccHHHHHHHHH-HCC--CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence            58899999999999999775 456  566887766210              00        00  0             


Q ss_pred             ---------HHHHHHHHHHH---HCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 007244           65 ---------VQCLTSASSAL---KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (611)
Q Consensus        65 ---------~~~~~~~~~~L---~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~  132 (611)
                               ..+...+.+.+   ..+..+|+|..-+.......+.+.        +|++++|.++..+|+.+|..     
T Consensus        78 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D~--------vi~V~a~~e~r~~RL~~R~g-----  144 (196)
T PRK14732         78 LKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCDA--------TVTVDSDPEESILRTISRDG-----  144 (196)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCCE--------EEEEECCHHHHHHHHHHcCC-----
Confidence                     00112222222   234567778744444333333222        88999999999999999964     


Q ss_pred             CCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       133 ~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                        ...+++..|+..+.......+..|.|+.++
T Consensus       145 --~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~  174 (196)
T PRK14732        145 --MKKEDVLARIASQLPITEKLKRADYIVRND  174 (196)
T ss_pred             --CCHHHHHHHHHHcCCHHHHHHhCCEEEECC
Confidence              345777777777542222234445555544

>TIGR00235 udk uridine kinase

Probab=98.50  E-value=1.7e-06  Score=85.90  Aligned_cols=40  Identities=30%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is~D~i   56 (611)
                      ++++.+|.|+|++||||||+++.|...++. ....++.|.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            467789999999999999999999987653 3456777665

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.50  E-value=1e-06  Score=87.85  Aligned_cols=129  Identities=22%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------------------------CC-CCcHH----
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------------------GK-SGTKV----   65 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------------------------~~-~~~~~----   65 (611)
                      ..+.+|.|+|.+||||||+++.+.. ++  +.+++.|.+..                           +. ...+.    
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g--~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~   79 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MG--CELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQ   79 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC--CeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHH
Confidence            3467899999999999999999875 56  55577664410                           10 01100    


Q ss_pred             ----------------------HHHHHHHHHHHCCC-cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 007244           66 ----------------------QCLTSASSALKKGK-SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        66 ----------------------~~~~~~~~~L~~Gk-~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                                            .+...+......+. .+|+|..-+.......+     .+   .+|++++|.+++.+|+
T Consensus        80 ~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~-----~d---~ii~V~a~~e~~~~Rl  151 (208)
T PRK14731         80 VVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAG-----LD---FIVVVAADTELRLERA  151 (208)
T ss_pred             HHhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhc-----CC---eEEEEECCHHHHHHHH
Confidence                                  00112222223443 46666643332211111     12   3788999999999999


Q ss_pred             HhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          123 VKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       123 ~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                      .+|..       ...+++..|+..++......+.+|.++.++
T Consensus       152 ~~R~~-------~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~  186 (208)
T PRK14731        152 VQRGM-------GSREEIRRRIAAQWPQEKLIERADYVIYNN  186 (208)
T ss_pred             HHcCC-------CCHHHHHHHHHHcCChHHHHHhCCEEEECC
Confidence            99965       355777778776654333334456666554

>PRK07667 uridine kinase; Provisional

Probab=98.47  E-value=1.3e-06  Score=86.20  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-------CCc--------HH--HHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-------SGT--------KV--QCLTSASSALK   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-------~~~--------~~--~~~~~~~~~L~   76 (611)
                      .+.+.+|.|.|+|||||||+|+.|.+.++   .+...++.|.+....       ...        +.  .+...+...|+
T Consensus        14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~   93 (193)
T PRK07667         14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQ   93 (193)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhc
Confidence            35568999999999999999999988754   356678888763210       000        11  11122323333


Q ss_pred             CC-------------------------CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 KG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 ~G-------------------------k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+                         ..+|+|+..+....-..+.++        +|++++|.++.++|+.+|..
T Consensus        94 ~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~--------~v~V~~~~~~~~~R~~~r~~  161 (193)
T PRK07667         94 NETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHY--------MVYLDCPRETRFLRESEETQ  161 (193)
T ss_pred             CCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceE--------EEEEECCHHHHHHHHhcccH
Confidence            32                         346778865543322222222        88999999999999998864

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.47  E-value=2.6e-06  Score=89.29  Aligned_cols=100  Identities=21%  Similarity=0.253  Sum_probs=63.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH-----CCCcEEEecCCCC--H
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK-----KGKSVFLDRCNLE--R   90 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-----~Gk~VIID~tnl~--~   90 (611)
                      .+..+|+|+|++||||||+++.+. ..+  +..++.  +      +. .++....+.+.     ..-.+++|..+..  .
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g--~~~~d~--~------~~-~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~   71 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALE-DLG--YYCVDN--L------PP-SLLPKLVELLAQSGGIRKVAVVIDVRSRPFFD   71 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHH-HcC--CeEECC--c------CH-HHHHHHHHHHHhcCCCCCeEEEEccCchhhHH
Confidence            445699999999999999999995 445  433432  1      11 11222222222     2236889997543  2


Q ss_pred             HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh-ccccc
Q 007244           91 EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK-RIEHE  129 (611)
Q Consensus        91 ~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~-R~~~~  129 (611)
                      ..+..+..++..+..+.+|||+++.+++.+|+.. |..|+
T Consensus        72 ~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RP  111 (288)
T PRK05416         72 DLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHP  111 (288)
T ss_pred             HHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCC
Confidence            3333444444457778899999999999999975 33454

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.46  E-value=1.9e-07  Score=90.97  Aligned_cols=132  Identities=20%  Similarity=0.344  Sum_probs=95.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhccC-----------CCCcHHHHHHHHHHHHH---------
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKG-----------KSGTKVQCLTSASSALK---------   76 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~~-----------~~~~~~~~~~~~~~~L~---------   76 (611)
                      .|+.++|.|++|||||++.+......    ...+++-|++.-.           ..+..+-.++.+..+..         
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv   81 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV   81 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence            37899999999999999998654331    1345566666411           11111111122222222         


Q ss_pred             -----C-----C-CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           77 -----K-----G-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        77 -----~-----G-k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                           .     | ..+++|..++.+..|-.+.++ +.+|..+-+|||....++|++|+..|..-+     ..+.+++++|
T Consensus        82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~-----k~~~dtiRki  156 (291)
T KOG4622|consen   82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAE-----KQKNDTIRKI  156 (291)
T ss_pred             eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccch-----hCccHHHHHH
Confidence                 1     2 236788888888999999999 999999999999999999999999998743     5788999999


Q ss_pred             HhhccCCCccCCc
Q 007244          145 LQKKELPKLSEGF  157 (611)
Q Consensus       145 ~~~~e~P~~~EgF  157 (611)
                      .+++|-|...|.+
T Consensus       157 ~EklE~PD~~ea~  169 (291)
T KOG4622|consen  157 FEKLEDPDEIEAL  169 (291)
T ss_pred             HHhccCccHHHHH
Confidence            9999999987666

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.42  E-value=1.1e-06  Score=86.57  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      +|.+.|+|||||||+|+.|.+.++ ...+|+.|.+.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~-~~~~i~~Ddf~   35 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP-NCCVIHQDDFF   35 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-CCeEEcccccc
Confidence            588999999999999999999874 25568888773

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=98.41  E-value=1.1e-07  Score=93.33  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=69.7

Q ss_pred             ccccccccccccceeecccccccccccCC--CCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 007244          231 ITEEKNSCLEGQEITSLLSDAAGEEVKGT--ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (611)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~  308 (611)
                      |.+..+.+.+.-|.+.|.|..  ....+.  +..--.+||.+|...++++||||+||+|+||||.+.||++++++++.|+
T Consensus        88 t~~~~Lpak~vIHtvgP~~~~--d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f  165 (200)
T KOG2633|consen   88 TGGYGLPAKRVIHTVGPRWKE--DKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFF  165 (200)
T ss_pred             cCCCCCceeEEEEecCchhhc--cchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHH
Confidence            445678899999999999986  332222  4445667889999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEE
Q 007244          309 NKLGNARLV  317 (611)
Q Consensus       309 ~~~~~i~iV  317 (611)
                      +++++..++
T Consensus       166 ~~~~d~~l~  174 (200)
T KOG2633|consen  166 VKNKDSSLK  174 (200)
T ss_pred             hhCCCceEE
Confidence            998763333

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.41  E-value=3.9e-06  Score=81.91  Aligned_cols=108  Identities=19%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeec-------chhc----cCC--CCc---HH---------HHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-------DTIN----KGK--SGT---KV---------QCLTSA   71 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~-------D~i~----~~~--~~~---~~---------~~~~~~   71 (611)
                      +.+|++.|++||||||+++.|++.++.   ....+..       +.++    .+.  ...   ..         .....+
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i   82 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKI   82 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999988752   1221210       1111    010  011   00         111345


Q ss_pred             HHHHHCCCcEEEecCCCCHH---------HHHHHHHh-CCCC--CeEEEEEEeCCHHHHHHHHHhccc
Q 007244           72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPE--VDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~~---------~R~~~~~l-~~~~--~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ...+..|..||+|...+...         ....+..+ ....  .+-.+|+|++|.+++.+|+..|..
T Consensus        83 ~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~  150 (195)
T TIGR00041        83 KPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE  150 (195)
T ss_pred             HHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            56777888999997433221         11111122 1111  123589999999999999999865

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.41  E-value=1.8e-06  Score=86.18  Aligned_cols=131  Identities=15%  Similarity=0.086  Sum_probs=78.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC--------------------C--c------------
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------------------G--T------------   63 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~--------------------~--~------------   63 (611)
                      ..|..|.|+|.+||||||+++.+.+.++.  .+++.|.+.....                    +  .            
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~--~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~   81 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNL--NVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESK   81 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCC--eEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCH
Confidence            34678999999999999999999888884  4577666521100                    0  0            


Q ss_pred             ----------HHHHHHHHHHHHHCC--CcEEEecCCCCHHHH--HHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           64 ----------KVQCLTSASSALKKG--KSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        64 ----------~~~~~~~~~~~L~~G--k~VIID~tnl~~~~R--~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                                +..+...+.+.+...  ..+|+|..-+.+...  ..+.     +   .++++.+|.++..+|+.+|..  
T Consensus        82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~-----D---~vi~V~a~~e~ri~Rl~~Rd~--  151 (204)
T PRK14733         82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYL-----K---KVIVIKADLETRIRRLMERDG--  151 (204)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhC-----C---EEEEEECCHHHHHHHHHHcCC--
Confidence                      001112333333332  357788743332211  1121     2   278889999999999999965  


Q ss_pred             CCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCC
Q 007244          130 GNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus       130 g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~  165 (611)
                           -..+++..|+..+.......+.-|.|+.++.
T Consensus       152 -----~s~~~a~~ri~~Q~~~eek~~~aD~VI~N~g  182 (204)
T PRK14733        152 -----KNRQQAVAFINLQISDKEREKIADFVIDNTE  182 (204)
T ss_pred             -----CCHHHHHHHHHhCCCHHHHHHhCCEEEECcC
Confidence                 2456777777776533333343345555543

>PLN02199 shikimate kinase

Probab=98.40  E-value=9.2e-06  Score=85.07  Aligned_cols=96  Identities=19%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC-CC-cH------------HHHHHHHHHHHHCCCcEEEec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG-TK------------VQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~-~~-~~------------~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ..-|+|+|++||||||+++.|++.++.++  |+.|.+.+.. .+ ..            .+....+...+.....+||..
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f--IDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VISt  179 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTF--FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST  179 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCE--EehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence            45689999999999999999999998554  8888763321 11 11            112233344444445666654


Q ss_pred             C---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           86 C---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        86 t---nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      -   ...+..+..+   + .+.   +|||+.|.+++.+|+..
T Consensus       180 GGG~V~~~~n~~~L---~-~G~---vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        180 GGGAVIRPINWKYM---H-KGI---SIWLDVPLEALAHRIAA  214 (303)
T ss_pred             CCcccCCHHHHHHH---h-CCe---EEEEECCHHHHHHHHhh
Confidence            2   2333444422   3 344   89999999999999985

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.38  E-value=2.1e-06  Score=88.03  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCC----------CcH-
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKS----------GTK-   64 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~----------~~~-   64 (611)
                      .+|.|+|..||||||+++.+.+.+|  +.+|+.|.+.+                         |..          ... 
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G--~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~   79 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHH--IEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQ   79 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC--CeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHH
Confidence            3799999999999999999988777  56688777621                         100          000 


Q ss_pred             --H--------HHHHHHHHHHH-------------CC-CcEEEecCCCCHHH-HHHHHHhCCCCCeEEEEEEeCCHHHHH
Q 007244           65 --V--------QCLTSASSALK-------------KG-KSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLCI  119 (611)
Q Consensus        65 --~--------~~~~~~~~~L~-------------~G-k~VIID~tnl~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~~  119 (611)
                        .        .+...+.+.+.             .+ ..+|+|..-+.+.. ...+.     +   .+|++.+|.++..
T Consensus        80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~-----D---~iv~V~a~~e~ri  151 (244)
T PTZ00451         80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFV-----S---ASVVVSCSEERQI  151 (244)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcC-----C---eEEEEECCHHHHH
Confidence              0        01112222221             22 36888884443322 11121     2   2888899999999


Q ss_pred             HHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       120 ~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                      +|+.+|..       ...+++..|+..+...-...+..|.|+.++
T Consensus       152 ~RL~~R~g-------~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~  189 (244)
T PTZ00451        152 ERLRKRNG-------FSKEEALQRIGSQMPLEEKRRLADYIIEND  189 (244)
T ss_pred             HHHHHcCC-------CCHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence            99999954       355777777777553333355567777776

>PLN02422 dephospho-CoA kinase

Probab=98.37  E-value=2.7e-06  Score=86.45  Aligned_cols=125  Identities=19%  Similarity=0.132  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCCC----------c---
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSG----------T---   63 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~~----------~---   63 (611)
                      +|.|+|.+||||||+++.+. ++|  +.+++.|.+..                         +..-          .   
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g--~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~   79 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSG--IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK   79 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCC--CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence            79999999999999999997 567  55688776621                         1000          0   


Q ss_pred             --------HHHHHHHHHHHH----HCC-CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           64 --------KVQCLTSASSAL----KKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        64 --------~~~~~~~~~~~L----~~G-k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                              +..+...+.+.+    ..+ ..+|+|..-+.......+     .+.   ++++++|.++..+|+.+|..   
T Consensus        80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~-----~D~---vI~V~a~~e~ri~RL~~R~g---  148 (232)
T PLN02422         80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKW-----TKP---VVVVWVDPETQLERLMARDG---  148 (232)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhh-----CCE---EEEEECCHHHHHHHHHHcCC---
Confidence                    001112221111    123 467888844433322222     222   88999999999999999964   


Q ss_pred             CCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       131 ~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                          ...+++..|+..+...-.....-|.|+.++
T Consensus       149 ----~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~  178 (232)
T PLN02422        149 ----LSEEQARNRINAQMPLDWKRSKADIVIDNS  178 (232)
T ss_pred             ----CCHHHHHHHHHHcCChhHHHhhCCEEEECC
Confidence                345777777766653222233334555554

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.36  E-value=5.6e-06  Score=86.96  Aligned_cols=110  Identities=20%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------------------CCC-------Cc-----
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKS-------GT-----   63 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------------------~~~-------~~-----   63 (611)
                      ....|.+|++.|+|||||||+|.+|+..++.. .+|+.|.+++                    .|.       ..     
T Consensus        88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~  166 (301)
T PRK04220         88 KSKEPIIILIGGASGVGTSTIAFELASRLGIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIY  166 (301)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhh
Confidence            34578999999999999999999999999855 3577877751                    010       00     


Q ss_pred             --HHH-------HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhccccc
Q 007244           64 --KVQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE  129 (611)
Q Consensus        64 --~~~-------~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~~  129 (611)
                        ..+       +...+.+++.+|.++||++.++.+.....+..  .+. .++.+++. .+.+..++|...|....
T Consensus       167 g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~--~~~-~~i~~~l~i~~ee~h~~RF~~R~~~~  239 (301)
T PRK04220        167 GFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYL--ENP-NVFMFVLTLSDEEAHKARFYARARVS  239 (301)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhh--cCC-CEEEEEEEECCHHHHHHHHHHHHhhh
Confidence              001       12566788899999999999999876655321  122 23344444 56688999998888753

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.35  E-value=2.2e-06  Score=80.77  Aligned_cols=105  Identities=20%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCC-----c--HHHHH---HHH-HHHHHCCCcE
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG-----T--KVQCL---TSA-SSALKKGKSV   81 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~-----~--~~~~~---~~~-~~~L~~Gk~V   81 (611)
                      .+++..+|+|.|++||||||+|-.|.+.+.   ...++++.|.++.|...     .  +.+.+   ..+ .-+...|-..
T Consensus        27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic  106 (207)
T KOG0635|consen   27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC  106 (207)
T ss_pred             hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence            366778999999999999999999877653   34567888988754221     1  11112   222 3333444445


Q ss_pred             EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      |..-...++.+|...+.+ .+.  .++-||+++|.++|..|-
T Consensus       107 iaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen  107 IASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             eehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence            555556677888888888 544  457789999999999875

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.34  E-value=4.2e-06  Score=82.33  Aligned_cols=112  Identities=21%  Similarity=0.291  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC---C----eEEeecchhcc----------C--C-------CCcHHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSAR---P----WARICQDTINK----------G--K-------SGTKVQCLTSASSAL   75 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~---~----~~~Is~D~i~~----------~--~-------~~~~~~~~~~~~~~L   75 (611)
                      ||.++|+|||||||||++|...++.   .    ...++.|.+..          +  .       ....+.+ ......|
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l-~~~l~~L   79 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLL-KEDLKAL   79 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHH-HHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHH-HHHHHHH
Confidence            6899999999999999999998862   2    33455555421          0  0       0112223 3333456


Q ss_pred             HCCC-------------------------cEEEecCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           76 KKGK-------------------------SVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        76 ~~Gk-------------------------~VIID~tnl-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                      ++|.                         .+|+++... ..+....+.++        .||++++.++++.|...|....
T Consensus        80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~--------~ifld~~~~~~l~Rri~RD~~~  151 (194)
T PF00485_consen   80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDL--------KIFLDADEDLRLERRIQRDVAE  151 (194)
T ss_dssp             HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SE--------EEEEEE-HHHHHHHHHHHHHHH
T ss_pred             hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccccee--------EEEecccHHHHHHHHhhhhccc
Confidence            5543                         268888553 22222222222        7799999999999999997654


Q ss_pred             CCCCCCCHHHHHHHHH
Q 007244          130 GNLQGGKAAAVVNRML  145 (611)
Q Consensus       130 g~~~~~vpeevi~rm~  145 (611)
                      ++   ..+++++.++.
T Consensus       152 rG---~~~~~~~~~~~  164 (194)
T PF00485_consen  152 RG---RSPEEVIAQYE  164 (194)
T ss_dssp             S----S-HHHHHHHHH
T ss_pred             cC---CcceeEEEEee
Confidence            32   46677777655

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.33  E-value=3.7e-06  Score=82.18  Aligned_cols=104  Identities=18%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch----hc--------cCC--CCcHHHHH------HHHHHH---HHCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----IN--------KGK--SGTKVQCL------TSASSA---LKKG   78 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~----i~--------~~~--~~~~~~~~------~~~~~~---L~~G   78 (611)
                      +|++.|++||||||+++.|.+.++.  ..+..+.    ..        .+.  .....+.+      +...+.   +..|
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~--~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~   78 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGY--EVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG   78 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC--ccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            4899999999999999999987663  2232221    11        110  00001111      122222   3478


Q ss_pred             CcEEEecCCCCHHH---------------H---HHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           79 KSVFLDRCNLEREQ---------------R---TDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        79 k~VIID~tnl~~~~---------------R---~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..||+|...+....               .   ..+...  .....+-.+|+|++|.+++.+|+.+|++
T Consensus        79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r  147 (193)
T cd01673          79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR  147 (193)
T ss_pred             CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence            99999996554311               1   112222  2223344789999999999999999875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.31  E-value=7.8e-06  Score=80.35  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTIN   57 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is~D~i~   57 (611)
                      +|.|+|+|||||||+++.|...++ ....+++.|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            588999999999999999988763 235667777764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN02348 phosphoribulokinase

Probab=98.31  E-value=5.3e-06  Score=89.90  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=75.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC------------------CeEEeecchhcc-CC--------------CC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR------------------PWARICQDTINK-GK--------------SG   62 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~------------------~~~~Is~D~i~~-~~--------------~~   62 (611)
                      ..+.|.+|.|.|+||||||||+++|...++.                  ...+|+.|++.. +.              ..
T Consensus        45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~  124 (395)
T PLN02348         45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN  124 (395)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccc
Confidence            3467899999999999999999999988752                  346788888741 10              00


Q ss_pred             cHHHHHHHHHHHHHCCC------------------------cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHH
Q 007244           63 TKVQCLTSASSALKKGK------------------------SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLC  118 (611)
Q Consensus        63 ~~~~~~~~~~~~L~~Gk------------------------~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~  118 (611)
                      ..+ .+......|++|+                        .+||++.+.....  .+.  ...+   ..||+++|.++.
T Consensus       125 dfD-ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr--~l~D---~~IyVd~~~dvr  196 (395)
T PLN02348        125 NFD-LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVR--DLLD---FSIYLDISDDVK  196 (395)
T ss_pred             cHH-HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--ccc--ccCc---EEEEEECCHHHH
Confidence            112 2334444666653                        3566763322111  111  1122   388999999999


Q ss_pred             HHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244          119 ISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus       119 ~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      +.|..+|....++   ..+++++.++.++
T Consensus       197 l~RRI~RD~~eRG---~S~EeV~~~i~ar  222 (395)
T PLN02348        197 FAWKIQRDMAERG---HSLESIKASIEAR  222 (395)
T ss_pred             HHHHHHhhHhhcC---CCHHHHHHHHHhc
Confidence            8888888754322   4567777766543

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.29  E-value=1.3e-06  Score=83.36  Aligned_cols=135  Identities=19%  Similarity=0.172  Sum_probs=74.8

Q ss_pred             CCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHHHHHHHHHHCCCcEEEec---CCCCHHH
Q 007244           29 PGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDR---CNLEREQ   92 (611)
Q Consensus        29 PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~~~~~~~L~~Gk~VIID~---tnl~~~~   92 (611)
                      |||||||+++.|++.++.+|  ++.|.+.....+.             ..+....+...+....+.||..   .....+.
T Consensus         1 ~GsGKStvg~~lA~~L~~~f--iD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~   78 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPF--IDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEEN   78 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEE--EEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCc--cccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence            79999999999999999554  8877774222110             1122233344444444666666   5555565


Q ss_pred             HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHH
Q 007244           93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAA  172 (611)
Q Consensus        93 R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~a  172 (611)
                      +.-+   +..+.   +|||+.+.+++.+|+..+..++.. ....+...+.+++.+ ..|. ++.++.+++..+...++++
T Consensus        79 ~~~L---~~~g~---vI~L~~~~~~l~~Rl~~~~~Rp~l-~~~~~~~~~~~~~~~-R~~~-Y~~~a~~~v~~~~~~~~~i  149 (158)
T PF01202_consen   79 RELL---KENGL---VIYLDADPEELAERLRARDNRPLL-KGKMEHEEILELLFE-REPL-YEQAADIVVDTDGSPPEEI  149 (158)
T ss_dssp             HHHH---HHHSE---EEEEE--HHHHHHHHHHHCTSGGT-CSHHHHHHHHHHHHH-HHHH-HHHHSSEEEETSSCHHHHH
T ss_pred             HHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCChHHHHHHHHHH-HHHH-HHhcCeEEEeCCCCCHHHH
Confidence            5555   32333   899999999999999888774321 111221122222221 1233 2334556666554444444


Q ss_pred             HH
Q 007244          173 LD  174 (611)
Q Consensus       173 v~  174 (611)
                      +.
T Consensus       150 ~~  151 (158)
T PF01202_consen  150 AE  151 (158)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.29  E-value=4.7e-06  Score=81.32  Aligned_cols=110  Identities=19%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC---------CC-----cHHHHHHHHHHHHHCC------
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---------SG-----TKVQCLTSASSALKKG------   78 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~---------~~-----~~~~~~~~~~~~L~~G------   78 (611)
                      +|.+.|+|||||||||+.|.+.+.   .....|+.|.+....         +.     ..+.+.+.+. .|.+|      
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~-~l~~~~~~~~p   79 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLH-DLLNGKEVELP   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHH-HHHCCCeeecc
Confidence            589999999999999999998763   456788988886411         11     1112222222 23333      


Q ss_pred             --------------------CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHH-HHHHHHhcccccCCCCCCCH
Q 007244           79 --------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVKRIEHEGNLQGGKA  137 (611)
Q Consensus        79 --------------------k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~-~~~Rl~~R~~~~g~~~~~vp  137 (611)
                                          ..+|||+..........+.+        ..||+++|.++ ++.|-..|....++   ..+
T Consensus        80 ~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d--------~~I~vd~~~~~~rl~rri~RD~~~rg---~~~  148 (179)
T cd02028          80 IYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLD--------IRVAVSGGVHLNRLLRRVVRDIQFRG---YSA  148 (179)
T ss_pred             cceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcC--------EEEEEeCCccHHHHHHHHHHhHHhhC---CCH
Confidence                                23788885544332222222        27899999998 77777777754432   456


Q ss_pred             HHHHHH
Q 007244          138 AAVVNR  143 (611)
Q Consensus       138 eevi~r  143 (611)
                      ++++.+
T Consensus       149 ~~~i~~  154 (179)
T cd02028         149 ELTILM  154 (179)
T ss_pred             HHHhhh
Confidence            666665

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.27  E-value=8.1e-06  Score=81.14  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .+|.|+|.+||||||+++.+.. +|  +.+++.|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g--~~vid~D~i   34 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG--FLIVDADQV   34 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC--CeEEeCcHH
Confidence            3799999999999999999986 66  567888865

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.27  E-value=1.2e-05  Score=80.80  Aligned_cols=152  Identities=16%  Similarity=0.207  Sum_probs=81.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee-------c-------c----------hhccC-C----CCcHHH------
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC-------Q-------D----------TINKG-K----SGTKVQ------   66 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is-------~-------D----------~i~~~-~----~~~~~~------   66 (611)
                      +|++-|+-||||||+++.|++.++.....-.       .       +          .+..+ .    .....+      
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            5899999999999999999988763211000       0       0          01111 1    111111      


Q ss_pred             ----HHHHHHHHHHCCCcEEEecCCCCHH---------------HHHHHHHh-----CCCCCeEEEEEEeCCHHHHHHHH
Q 007244           67 ----CLTSASSALKKGKSVFLDRCNLERE---------------QRTDFVKL-----GGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        67 ----~~~~~~~~L~~Gk~VIID~tnl~~~---------------~R~~~~~l-----~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                          ..+.+...+..|..||+|...+...               ....+..+     .....+=.+|+|++|.+++.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence                1122334566788999999643321               11111111     11122336899999999999999


Q ss_pred             HhcccccCCCCCCCHHHHHHHHHhh---ccCCCccCCccEEEEcCCh--hhHHHHHHHhc
Q 007244          123 VKRIEHEGNLQGGKAAAVVNRMLQK---KELPKLSEGFSRITLCQNE--NDVQAALDTYS  177 (611)
Q Consensus       123 ~~R~~~~g~~~~~vpeevi~rm~~~---~e~P~~~EgFd~V~vv~~~--~evd~av~~~~  177 (611)
                      .+|++..   ....+.+-++++...   +..+...+ ...+++++..  ..++.++..+.
T Consensus       161 ~~R~~~~---e~~~~~~yl~~l~~~y~~~~~~~~~~-~~~~i~id~~~~~~~e~i~~~I~  216 (219)
T cd02030         161 KKRGDPH---EMKVTSAYLQDIENAYKKTFLPEISE-HSEVLQYDWTEAGDTEKVVEDIE  216 (219)
T ss_pred             HHcCCch---hhcccHHHHHHHHHHHHHHHHHhhcc-CCCEEEEeCCChhhHHHHHHHHH
Confidence            9987531   113444433333333   22222222 2456666544  66666666543

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.26  E-value=5.7e-06  Score=91.24  Aligned_cols=107  Identities=17%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------C-------------------CCC-----cH-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G-------------------KSG-----TK-   64 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------~-------------------~~~-----~~-   64 (611)
                      ..|.+|+++|+|||||||+|.+++..++..+ +|+.|.++.        +                   ..+     .. 
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~-ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~  331 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR-IVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA  331 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE-EeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence            4699999999999999999999999998432 467776632        0                   000     00 


Q ss_pred             -------HH-------HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcccc
Q 007244           65 -------VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH  128 (611)
Q Consensus        65 -------~~-------~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~~~  128 (611)
                             .+       +...+.+.+..|.++|||+.++.+..+...   ...+..+..|++- .+.++..+|...|...
T Consensus       332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~---~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~  407 (475)
T PRK12337        332 EVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHP---YQAGALVVPMLVTLPDEALHRRRFELRDRE  407 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHH---HhcCCceEEEEEEECCHHHHHHHHHHHhhh
Confidence                   11       125678899999999999999999876532   2333333333333 3668888999999764

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.24  E-value=1e-05  Score=81.27  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=89.7

Q ss_pred             cCCCc-EEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEeecch------------------------hccCCCCcHHHHH-
Q 007244           16 KKWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDT------------------------INKGKSGTKVQCL-   68 (611)
Q Consensus        16 ~~~~p-~LIvLvG~PGSGKST~A~~L~~~~~~~~-~~Is~D~------------------------i~~~~~~~~~~~~-   68 (611)
                      ..+++ .-|+|+||+|+||+|+..++.+.++..+ ..++.+.                        +.++.+.++..+. 
T Consensus        32 ~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~g  111 (231)
T KOG0707|consen   32 TPPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSG  111 (231)
T ss_pred             cCCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhc
Confidence            34444 7899999999999999999999988422 2333111                        0122333332221 


Q ss_pred             -------HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEE-eCCHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244           69 -------TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (611)
Q Consensus        69 -------~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~L-d~p~e~~~~Rl~~R~~~~g~~~~~vpeev  140 (611)
                             ..+++....|+..|+|.      +.+....++......+++++ .++...+.+|+..|.+       +..+++
T Consensus       112 n~yGtsi~av~~~~~~gk~~ildI------d~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt-------e~~~~l  178 (231)
T KOG0707|consen  112 NKYGTSIAAVQRLMLSGKVCILDI------DLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGT-------ETEESL  178 (231)
T ss_pred             ccCCchHHHHHHHHhcCCcceeeh------hhcCceeeecCCCceEEEEecCCcchhHHHHhhccCc-------chHHHH
Confidence                   56677778899999988      45544444334444445554 5777999999999966       678899


Q ss_pred             HHHHHhhccCCCccCC---ccEEEEcC
Q 007244          141 VNRMLQKKELPKLSEG---FSRITLCQ  164 (611)
Q Consensus       141 i~rm~~~~e~P~~~Eg---Fd~V~vv~  164 (611)
                      +.|+....++-...++   |+.+++..
T Consensus       179 ~~r~~sa~~e~~~~~~~g~~d~~~~ns  205 (231)
T KOG0707|consen  179 LKRLKSAEEEFEILENSGSFDLVIVNS  205 (231)
T ss_pred             HHHHHhhhhhhccccCCccccceecCC
Confidence            9998854444444343   88888874

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.24  E-value=8.8e-07  Score=79.65  Aligned_cols=97  Identities=22%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEe--ec-------chh--ccCCCCcH---HHHHHHHHHH---HHCCCcEEEec
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARI--CQ-------DTI--NKGKSGTK---VQCLTSASSA---LKKGKSVFLDR   85 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~I--s~-------D~i--~~~~~~~~---~~~~~~~~~~---L~~Gk~VIID~   85 (611)
                      |+|.|+|||||||+|+.|.+.++.....+  ..       +..  ........   ......+...   ...+..+|+|+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~   80 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDG   80 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEec
Confidence            78999999999999999999862000000  00       000  00111111   1223333333   45678899999


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEE-EEEeCCHHHHHHHHHhcccc
Q 007244           86 CNLEREQRTDFVKLGGPEVDVHA-VVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        86 tnl~~~~R~~~~~l~~~~~~v~v-V~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .....         ......... |+|++|.+++.+|+..|...
T Consensus        81 ~~~~~---------~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~  115 (129)
T PF13238_consen   81 ILSNL---------ELERLFDIKFIFLDCSPEELRKRLKKRGRK  115 (129)
T ss_dssp             SSEEE---------CETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred             ccchh---------cccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence            44221         111111222 89999999999999999874

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.22  E-value=1e-05  Score=94.12  Aligned_cols=126  Identities=20%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhccC----------CCCcHH---HHH----HHHHHHH-HCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTINKG----------KSGTKV---QCL----TSASSAL-KKG   78 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~~~----------~~~~~~---~~~----~~~~~~L-~~G   78 (611)
                      ..+++|+|+||+||||+|++|.+.++.   ...+++.+.++..          +.....   ++.    ..+...+ ..|
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~G  294 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTD  294 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999988752   2333444443311          111111   111    2122223 358


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCC----eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEV----DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~----~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      ..+|+|++|.....|..+++. ++.+.    .+.+|..-++....++|+..|....   .++.+++...++++.+
T Consensus       295 gvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~---~~~~~e~~~~~~~~~~  366 (664)
T PTZ00322        295 GVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEM---FPGAPEDFVDRYYEVI  366 (664)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence            899999999999999888877 65553    5666666677777778887775421   1235666666666554

>PRK07429 phosphoribulokinase; Provisional

Probab=98.18  E-value=2.2e-05  Score=83.82  Aligned_cols=121  Identities=22%  Similarity=0.318  Sum_probs=74.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhcc---------CC--CCcH---HHHHHHHHHHHHCC--
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINK---------GK--SGTK---VQCLTSASSALKKG--   78 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~D~i~~---------~~--~~~~---~~~~~~~~~~L~~G--   78 (611)
                      ...+|.+|.++|++|||||||++.+...++.. ..+++.|.+..         +.  ..+.   ...+....+.|..|  
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~   83 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP   83 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence            35678999999999999999999999887633 44677777631         11  0011   11222222344443  


Q ss_pred             ----------------------CcEEEecCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCC
Q 007244           79 ----------------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGG  135 (611)
Q Consensus        79 ----------------------k~VIID~tn-l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~  135 (611)
                                            ..||+|+.. +.......+.++        .||+++|.++.+.|..+|....++   .
T Consensus        84 I~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~--------~I~Vda~~evr~~Rri~Rd~~rrG---~  152 (327)
T PRK07429         84 ILKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDF--------KVYLDPPEEVKIAWKIKRDMAKRG---H  152 (327)
T ss_pred             eecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCE--------EEEEECCHHHHHHHHHHHHHhhcC---C
Confidence                                  236778854 333322334333        889999999999887777654321   3


Q ss_pred             CHHHHHHHHHhh
Q 007244          136 KAAAVVNRMLQK  147 (611)
Q Consensus       136 vpeevi~rm~~~  147 (611)
                      ..+++..++.++
T Consensus       153 s~eei~~~i~~r  164 (327)
T PRK07429        153 TYEQVLAEIEAR  164 (327)
T ss_pred             CHHHHHHHHHHh
Confidence            556666666543

>PLN02924 thymidylate kinase

Probab=98.18  E-value=2.9e-05  Score=78.47  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeec-c-------hhc----cC-CCCcH----------HHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQ-D-------TIN----KG-KSGTK----------VQCLT   69 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~-D-------~i~----~~-~~~~~----------~~~~~   69 (611)
                      ...++.+|+|.|+.||||||+++.|.+.+...   ...+.. +       .++    .. ....+          .+...
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~   91 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS   91 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999877522   111110 0       011    11 11111          11124


Q ss_pred             HHHHHHHCCCcEEEecCCCCHHHH-------HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           70 SASSALKKGKSVFLDRCNLEREQR-------TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        70 ~~~~~L~~Gk~VIID~tnl~~~~R-------~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      .+..+|..|..||.|...+..-..       ..|+. + .....+=.+|+|++|.+++.+|..
T Consensus        92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~  154 (220)
T PLN02924         92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG  154 (220)
T ss_pred             HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence            577888999999999976643211       12332 3 222233468999999999999964

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.12  E-value=4.1e-06  Score=82.06  Aligned_cols=125  Identities=17%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CCCC----------cH--
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSG----------TK--   64 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~~~----------~~--   64 (611)
                      +|.|+|..||||||+++.+.+ +|  +.+++.|.+.+                         |..-          ..  
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G--~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~   78 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LG--FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK   78 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT---EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CC--CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence            789999999999999998877 77  67788777621                         1000          00  


Q ss_pred             ---------HHHHHHHHHHHHC---CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCC
Q 007244           65 ---------VQCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (611)
Q Consensus        65 ---------~~~~~~~~~~L~~---Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~  132 (611)
                               ..+...+.+.+..   ...+|+|..-+.......+     .+.   +|++.+|.++..+|+.+|..     
T Consensus        79 ~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~-----~D~---vi~V~a~~e~ri~Rl~~R~~-----  145 (180)
T PF01121_consen   79 LKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKL-----CDE---VIVVYAPEEIRIKRLMERDG-----  145 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGG-----SSE---EEEEE--HHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhh-----hce---EEEEECCHHHHHHHHHhhCC-----
Confidence                     0111333333332   2568888866554322222     332   88889999999999999975     


Q ss_pred             CCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244          133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus       133 ~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                        -..+++..++..+...-...+.-|.|+.++
T Consensus       146 --~~~~~~~~ri~~Q~~~~~k~~~ad~vI~N~  175 (180)
T PF01121_consen  146 --LSEEEAEARIASQMPDEEKRKRADFVIDNN  175 (180)
T ss_dssp             --STHHHHHHHHHTS--HHHHHHH-SEEEE-S
T ss_pred             --CcHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence              345666666666542222233334555554

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.10  E-value=1.7e-05  Score=89.06  Aligned_cols=96  Identities=21%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-----------c-H-HHHHHHHHHHHHCCCcEEEecC--
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T-K-VQCLTSASSALKKGKSVFLDRC--   86 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-----------~-~-~~~~~~~~~~L~~Gk~VIID~t--   86 (611)
                      -|+|+|+|||||||+++.+++.++.+  +++.|.+.....+           + + .+....+.+.+.....+||..-  
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~--~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg   79 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQ--FIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG   79 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCe--EEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence            38999999999999999999999844  5777766432221           0 0 0111222233333344555431  


Q ss_pred             -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        87 -nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                       .+....|..+   +. +   .+|||++|.+++.+|+..|.
T Consensus        80 vv~~~~~r~~l---~~-~---~vI~L~as~e~l~~Rl~~~~  113 (488)
T PRK13951         80 VVIDPENRELL---KK-E---KTLFLYAPPEVLMERVTTEN  113 (488)
T ss_pred             cccChHHHHHH---hc-C---eEEEEECCHHHHHHHhccCC
Confidence             2344555544   32 2   27899999999999997763

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=98.07  E-value=1e-06  Score=81.72  Aligned_cols=72  Identities=8%  Similarity=0.098  Sum_probs=55.8

Q ss_pred             ccccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHH
Q 007244          231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV  304 (611)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv  304 (611)
                      |.+.++.|.+..|.+.+..+.  ....+.....-.+|+..+.+++++|||||+|+||++|||.++|+++|.+++
T Consensus        61 t~~~~l~~k~Iih~~~~~~~~--~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i  132 (133)
T cd03330          61 TGAGDLPARYVIHAATMEEPG--RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI  132 (133)
T ss_pred             EeCCCCCCCEEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence            556677888999988765442  111122333445688889999999999999999999999999999999987

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.04  E-value=3.5e-05  Score=77.87  Aligned_cols=122  Identities=23%  Similarity=0.252  Sum_probs=70.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEE-eecchhcc--------CC------C--CcHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWAR-ICQDTINK--------GK------S--GTKVQCLTSASSAL   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~-Is~D~i~~--------~~------~--~~~~~~~~~~~~~L   75 (611)
                      ..+++.+|.|.|++|||||||++.+...+..   ...+ ++.|.+..        +.      .  .....+. .+...|
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~-~~l~~l  107 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA-ALLRRL  107 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH-HHHHHH
Confidence            4567899999999999999999999876652   2223 55554421        10      0  0111222 222223


Q ss_pred             HCC---------------------------CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ~~G---------------------------k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..|                           ..+|+|+..+... ...+..+ ...+   .+|++++|.+++++|+..|..
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~-~~~~~~l~~~~D---~vi~v~~~~~~~~~R~~~R~~  183 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLD-EEPWRRLAGLFD---FTIFLDAPAEVLRERLVARKL  183 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeec-cccHHHHHhhCC---EEEEEECCHHHHHHHHHHHHH
Confidence            222                           2367777544221 1122222 2233   389999999999999999953


Q ss_pred             ccCCCCCCCHHHHHHHHHh
Q 007244          128 HEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus       128 ~~g~~~~~vpeevi~rm~~  146 (611)
                      ..+    ..++++..++.+
T Consensus       184 ~~g----~s~~~~~~~~~~  198 (229)
T PRK09270        184 AGG----LSPEAAEAFVLR  198 (229)
T ss_pred             hcC----CCHHHHHHHHHh
Confidence            211    345666666654

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.03  E-value=8.1e-05  Score=74.19  Aligned_cols=157  Identities=19%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCe-E-Eeec----chhccCCCC--cHHHHH------HHHHHHHHCCCcEEEec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPW-A-RICQ----DTINKGKSG--TKVQCL------TSASSALKKGKSVFLDR   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~-~Is~----D~i~~~~~~--~~~~~~------~~~~~~L~~Gk~VIID~   85 (611)
                      ..+|++.|+-|+||||+|+.|+++++... . .++.    |.+.++...  ...|.+      +...+.+..+. .|.|.
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~-~i~dr   82 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKN-NILDR   82 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccc-cccCc
Confidence            35799999999999999999999998332 1 1111    222211111  111211      33344444443 34442


Q ss_pred             ----------------CCCCHHHHHHHHHh---------CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244           86 ----------------CNLEREQRTDFVKL---------GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (611)
Q Consensus        86 ----------------tnl~~~~R~~~~~l---------~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeev  140 (611)
                                      .++.+..-.-|.++         ..++.+=.+|+|+++.+++++|+.+|++.--.....--..-
T Consensus        83 sI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y  162 (216)
T COG1428          83 SIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDY  162 (216)
T ss_pred             chhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHH
Confidence                            23333333333322         23335557999999999999999999874211101110223


Q ss_pred             HHHHHhh----cc----CCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244          141 VNRMLQK----KE----LPKLSEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       141 i~rm~~~----~e----~P~~~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      ++++.+.    ++    .|...=..+.+-++.++++...++..+.
T Consensus       163 ~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~  207 (216)
T COG1428         163 LKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQIL  207 (216)
T ss_pred             HHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHH
Confidence            3333332    21    3333222345666667777777666543

>TIGR00017 cmk cytidylate kinase

Probab=98.02  E-value=6.7e-05  Score=75.61  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D   54 (611)
                      |+.+|.|.||+||||||+++.+++.++..  +++.+
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~--~~~~g   34 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYA--YLDSG   34 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCc--eeeCc
Confidence            45689999999999999999999988843  35544

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.99  E-value=0.00011  Score=82.62  Aligned_cols=37  Identities=22%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      .+.+|.+.|+|||||||+++.+++.++  +.+++.|.++
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~Y  319 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMY  319 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCcee
Confidence            667999999999999999999999998  5668766553

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.99  E-value=1.5e-05  Score=74.36  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=56.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeE-Ee--------------------ecchh----ccCCCCcH--------HHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWA-RI--------------------CQDTI----NKGKSGTK--------VQCL   68 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~-~I--------------------s~D~i----~~~~~~~~--------~~~~   68 (611)
                      +|+|+||+||||||+++.|++.++..+. .+                    +.+.+    ..+.+..+        ....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            4789999999999999999987543211 11                    11111    01111110        0122


Q ss_pred             HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Q 007244           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP  114 (611)
Q Consensus        69 ~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p  114 (611)
                      ..+.+.++.|+.+|+|.      .+.....++.....+.+||+.+|
T Consensus        81 ~~i~~~~~~g~~~il~~------~~~~~~~l~~~~~~~~~I~i~~~  120 (137)
T cd00071          81 AAVEEALAEGKIVILEI------DVQGARQVKKSYPDAVSIFILPP  120 (137)
T ss_pred             HHHHHHHhCCCeEEEEe------cHHHHHHHHHcCCCeEEEEEECC
Confidence            56778889999999999      66666666334567788899988

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK13974 thymidylate kinase; Provisional

Probab=97.97  E-value=0.0001  Score=73.80  Aligned_cols=108  Identities=15%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC--------eEEee--c---------chhc--cCC--CCcHH-----------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARP--------WARIC--Q---------DTIN--KGK--SGTKV-----------   65 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~--------~~~Is--~---------D~i~--~~~--~~~~~-----------   65 (611)
                      ..+|+|.|++||||||+++.+.+.+...        +....  .         +.+.  .+.  .....           
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999998766411        11111  0         1111  011  11110           


Q ss_pred             HHHHHHHHHHHCCCcEEEecCCCCHHH------------HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           66 QCLTSASSALKKGKSVFLDRCNLEREQ------------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~------------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+...+..+|..|..||.|......-.            ...+..+ .....+-.+|+|++|.+++.+|+..|..
T Consensus        83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d  157 (212)
T PRK13974         83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP  157 (212)
T ss_pred             HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence            011245667888988888884333211            1222222 1111244689999999999999988753

>PRK15453 phosphoribulokinase; Provisional

Probab=97.97  E-value=8.7e-05  Score=77.40  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~   57 (611)
                      .++.+|.++|.|||||||+++.+.+.++   .....++.|.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            4567999999999999999999987664   235678888775

>PRK06761 hypothetical protein; Provisional

Probab=97.96  E-value=3.2e-05  Score=80.85  Aligned_cols=108  Identities=19%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe----ecchhc-----cCCCCcHHH---H--------HHHHHHHHHCCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI----CQDTIN-----KGKSGTKVQ---C--------LTSASSALKKGK   79 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I----s~D~i~-----~~~~~~~~~---~--------~~~~~~~L~~Gk   79 (611)
                      ..+|+|.|+|||||||+++.+.+.+......+    +.+...     .....+..+   +        .....+.+..|.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            46899999999999999999999876422111    111111     111111111   1        134556777888


Q ss_pred             cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .+|+-...+...+|..+..-......+..++ ..|.+.+.+|...|-.|
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw~~  130 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRWND  130 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHHHH
Confidence            8888776666666666643100112344555 99999999999888654

>PRK05439 pantothenate kinase; Provisional

Probab=97.96  E-value=3e-05  Score=82.11  Aligned_cols=42  Identities=14%  Similarity=0.095  Sum_probs=33.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN   57 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~   57 (611)
                      ..+.|.+|.+.|+|||||||+|+.|...++     ....+|+.|.+.
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            456789999999999999999999987553     235678887773

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=97.95  E-value=2.6e-05  Score=79.03  Aligned_cols=106  Identities=22%  Similarity=0.316  Sum_probs=77.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhcc------------------CCCCcHHHHHHHHHHHHHCC-
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKKG-   78 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~~------------------~~~~~~~~~~~~~~~~L~~G-   78 (611)
                      ++.=++++|+|||||+|+|..+.+.++..  |+.. |.++.                  +.+.+.+.+...+...|..+ 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~--hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVI--HISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCc--cchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence            56778999999999999999999998843  4653 44432                  33334444445555566666 


Q ss_pred             --CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           79 --KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        79 --k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                        +.+|+|+++.+..+-..+.+. ...+   .+|.|.+|.+.+.+|+..|..|+
T Consensus        92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d---~Vi~l~vp~~~L~~ri~~r~ihp  142 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEELLDRIAQID---LVINLKVPEEVLVDRITGRRIHP  142 (235)
T ss_pred             cccccccCCCCcchHHHHHHHHccCCcc---eEEEecCCHHHHHHHHhcccccC
Confidence              679999998888766665444 3333   48899999999999999998875

>PRK07933 thymidylate kinase; Validated

Probab=97.93  E-value=0.00018  Score=72.16  Aligned_cols=106  Identities=24%  Similarity=0.287  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeec---------chh----cc--CCC--CcH----------HHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ---------DTI----NK--GKS--GTK----------VQCLTSA   71 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~---------D~i----~~--~~~--~~~----------~~~~~~~   71 (611)
                      +|++-|+-||||||+++.|.+.+..   ....+..         +.+    ..  +..  ...          .+....+
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I   81 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDEL   81 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHH
Confidence            7999999999999999999887642   2222211         111    11  111  000          1112446


Q ss_pred             HHHHHCCCcEEEecCCCCHHHH-------------HHHHHh--C---CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           72 SSALKKGKSVFLDRCNLEREQR-------------TDFVKL--G---GPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~~~R-------------~~~~~l--~---~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..+|..|..||.|...+..-..             ..|+..  .   ....+=.+|+|++|.++..+|+.+|+.
T Consensus        82 ~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~  155 (213)
T PRK07933         82 AGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA  155 (213)
T ss_pred             HHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence            6777889999999955443211             123322  1   111234689999999999999999864

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.92  E-value=7.7e-05  Score=84.51  Aligned_cols=40  Identities=35%  Similarity=0.428  Sum_probs=31.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      ...+.+|.|.|+||||||||++.|+..++ ....|+.|.+.
T Consensus        62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp-~vgvIsmDdy~  101 (656)
T PLN02318         62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVISMDNYN  101 (656)
T ss_pred             CCCeEEEEEECCCCCcHHHHHHHHHhhCC-CcEEEEEccee
Confidence            44678999999999999999999998764 23467777653

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.91  E-value=4.2e-05  Score=77.14  Aligned_cols=36  Identities=19%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN   57 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~   57 (611)
                      +|.|.|++||||||+|+.|...+.     ....+|+.|.+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            578999999999999999988763     234567777663

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.90  E-value=0.00012  Score=76.17  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=64.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHC------CCcEEEecCCCCH-HHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK------GKSVFLDRCNLER-EQR   93 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~------Gk~VIID~tnl~~-~~R   93 (611)
                      .+|+++|+|||||||-.+.+ +.+|  |..|+.  +      +.. ++....+.+..      .-.++||.-+... ...
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~G--y~cvDN--l------P~~-Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~   69 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLG--YYCVDN--L------PPS-LLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL   69 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcC--eeEEcC--C------cHH-HHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence            48999999999999988866 6777  654542  2      222 22222223331      1237889855432 122


Q ss_pred             HH-HHHhCCCCCeEEEEEEeCCHHHHHHHH-HhcccccCCC
Q 007244           94 TD-FVKLGGPEVDVHAVVLDLPAKLCISRS-VKRIEHEGNL  132 (611)
Q Consensus        94 ~~-~~~l~~~~~~v~vV~Ld~p~e~~~~Rl-~~R~~~~g~~  132 (611)
                      .. +..++..+..+.++||+++.+++.+|- ..|..||...
T Consensus        70 ~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~  110 (284)
T PF03668_consen   70 FEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSS  110 (284)
T ss_pred             HHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCC
Confidence            22 223355588899999999999999996 4677777543

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.88  E-value=9.7e-05  Score=71.80  Aligned_cols=147  Identities=16%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             EEcCCCCcHHHHHHHHHHHcCCC-e-EEeec--------chh----ccCCCCcH------------HHHHHHHHHHHHCC
Q 007244           25 MVGAPGSGKSTFCEHVMRSSARP-W-ARICQ--------DTI----NKGKSGTK------------VQCLTSASSALKKG   78 (611)
Q Consensus        25 LvG~PGSGKST~A~~L~~~~~~~-~-~~Is~--------D~i----~~~~~~~~------------~~~~~~~~~~L~~G   78 (611)
                      +=|+.||||||+++.|.+.+... + +.+..        +.+    ........            ..+...+..+|..|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g   80 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG   80 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            35999999999999998876522 2 12221        111    11111111            11224567889999


Q ss_pred             CcEEEecCCCCH------------HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           79 KSVFLDRCNLER------------EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        79 k~VIID~tnl~~------------~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ..||+|...++.            .....+........+=.+|+|++|.+++.+|+..|....  .......+.+.++..
T Consensus        81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~--~~~~~~~~~~~~~~~  158 (186)
T PF02223_consen   81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKD--DEEEEDLEYLRRVRE  158 (186)
T ss_dssp             SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTT--TTTTHHHHHHHHHHH
T ss_pred             CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccc--hHHHHHHHHHHHHHH
Confidence            999999932222            111112111000022258899999999999999998711  111223344444444


Q ss_pred             hccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          147 KKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       147 ~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      .+..... + ....++++....++++..+
T Consensus       159 ~y~~l~~-~-~~~~~iid~~~~~e~v~~~  185 (186)
T PF02223_consen  159 AYLELAK-D-PNNWVIIDASRSIEEVHEQ  185 (186)
T ss_dssp             HHHHHHH-T-TTTEEEEETTS-HHHHHHH
T ss_pred             HHHHHHc-C-CCCEEEEECCCCHHHHHhh
Confidence            4322221 1 1245566655667766654

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.87  E-value=0.00025  Score=71.09  Aligned_cols=110  Identities=26%  Similarity=0.330  Sum_probs=70.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeec--------chhc----cC--CCCcHH----------H-HHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW--ARICQ--------DTIN----KG--KSGTKV----------Q-CLTSA   71 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~--~~Is~--------D~i~----~~--~~~~~~----------~-~~~~~   71 (611)
                      ++.+|++=|+-||||||.++.+.+.+....  +.+..        ..++    ++  ......          + +...+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i   81 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI   81 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999887665221  12221        1121    21  122111          1 33566


Q ss_pred             HHHHHCCCcEEEecCCCCHHHHHH--------HH----Hh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           72 SSALKKGKSVFLDRCNLEREQRTD--------FV----KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~~~R~~--------~~----~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      ..++..|+.||.|....+.-..++        |+    +. ...-.+-.+++||+|.++.++|..+|...
T Consensus        82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~  151 (208)
T COG0125          82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL  151 (208)
T ss_pred             HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            778899999999996555433332        11    12 21113346899999999999999999764

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.87  E-value=2.3e-06  Score=99.91  Aligned_cols=80  Identities=14%  Similarity=0.012  Sum_probs=69.6

Q ss_pred             cccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCC----------ccccccCccCCCCCChHHHHHHHH
Q 007244          232 TEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVII  301 (611)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~----------SiAfPaIStGi~gfP~~~aa~Iiv  301 (611)
                      .+.++.|.++-|.+-|.|..+..  .+.+...--+++.+|++++++          |||||+||||+||||.++|+.|++
T Consensus       592 ~~g~L~~~~vIh~vGp~~~~~~~--~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~  669 (725)
T PRK13341        592 PAGKLKLLYSIPAVGPAWALLSE--DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDS  669 (725)
T ss_pred             CCCeeEEEEeccccChHhhhcCc--cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCH
Confidence            67788899999999998876332  445666677888999999999          999999999999999999999999


Q ss_pred             HHHHHHHHhcCC
Q 007244          302 EKVEEFVNKLGN  313 (611)
Q Consensus       302 ~tv~~f~~~~~~  313 (611)
                      ++++.|+.+++.
T Consensus       670 ~~i~~~~~~~~~  681 (725)
T PRK13341        670 KLIKRWLAQGPD  681 (725)
T ss_pred             HHHHHHHhcCCc
Confidence            999999998765

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.85  E-value=8.1e-05  Score=81.50  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .|.|+|.+||||||+++.|.+ +|  +.+|+.|.+
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G--~~vidaD~i   34 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LG--AVVVDADVL   34 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CC--CeEEehHHH
Confidence            589999999999999999976 67  566888777

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.85  E-value=5.7e-05  Score=75.29  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +..+|.|+|.|||||||+++.+.+ +|  +.+++.|.+
T Consensus         1 ~~~iIglTG~igsGKStva~~~~~-~G--~~vidaD~v   35 (201)
T COG0237           1 MMLIIGLTGGIGSGKSTVAKILAE-LG--FPVIDADDV   35 (201)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHH-cC--CeEEEccHH
Confidence            457899999999999999998877 77  566887766

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=97.85  E-value=7.1e-06  Score=80.75  Aligned_cols=72  Identities=11%  Similarity=-0.037  Sum_probs=49.3

Q ss_pred             ccccccceeecccccccccccCCCCcchhhhcccCCCC--CCCccccccCccCCCCCChHHHHHHHHHHHHHHH
Q 007244          237 SCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSS--DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (611)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~  308 (611)
                      .+...-|+.+...+.......+.....--+++..+..+  +++|||||+||||+||||.++||++++.++++|+
T Consensus       113 ~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~  186 (186)
T cd02900         113 GIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN  186 (186)
T ss_pred             CCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence            36777776443232101111122223344556666666  8999999999999999999999999999999883

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.84  E-value=0.00013  Score=75.99  Aligned_cols=115  Identities=22%  Similarity=0.347  Sum_probs=66.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecchhcc---------CCC--CcH---HHHHHHHHHHHHCC--------
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINK---------GKS--GTK---VQCLTSASSALKKG--------   78 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is~D~i~~---------~~~--~~~---~~~~~~~~~~L~~G--------   78 (611)
                      +|.|+|++|||||||++.|...++. ...+++.|.+..         +..  ...   ..........|+.|        
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            5789999999999999999987653 244677776632         000  000   01112222334433        


Q ss_pred             ----------------CcEEEecCC-CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244           79 ----------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (611)
Q Consensus        79 ----------------k~VIID~tn-l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi  141 (611)
                                      ..+|+|+.. +.......+.++        .||+++|.++.+.|..+|....++   ...+++.
T Consensus        81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~--------~I~vd~~~e~r~~r~i~Rd~~rrG---~s~e~v~  149 (273)
T cd02026          81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDF--------SVYLDISDEVKFAWKIQRDMAERG---HSLEDVL  149 (273)
T ss_pred             cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccE--------EEEEECChhHHHHHHHHHHHHHhC---CCHHHHH
Confidence                            236777744 222222223222        889999999997776666543221   3556666


Q ss_pred             HHHHhh
Q 007244          142 NRMLQK  147 (611)
Q Consensus       142 ~rm~~~  147 (611)
                      .++..+
T Consensus       150 ~~i~~r  155 (273)
T cd02026         150 ASIEAR  155 (273)
T ss_pred             HHHHhh
Confidence            666543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.83  E-value=7.3e-05  Score=78.55  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=30.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i   56 (611)
                      .+.|.+|.+.|++||||||+++.|...+.     .....++.|.+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f  103 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF  103 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            46789999999999999999988755432     23456677765

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PLN02165 adenylate isopentenyltransferase

Probab=97.79  E-value=0.00017  Score=76.89  Aligned_cols=110  Identities=19%  Similarity=0.197  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--c---------------C-----------CC--CcHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--K---------------G-----------KS--GTKV   65 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~---------------~-----------~~--~~~~   65 (611)
                      .+.++.+|+|+||+||||||+|..|++.++.  .+|+.|.+.  .               +           ..  .+..
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~--eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~  116 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPS--EIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTAS  116 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcCC--ceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHH
Confidence            3455669999999999999999999999873  346665540  0               0           00  0111


Q ss_pred             H----HHHHHHHHHHCCCcEEEec-CCCCHHHHHH-H-------HHh-CC-----CCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           66 Q----CLTSASSALKKGKSVFLDR-CNLEREQRTD-F-------VKL-GG-----PEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        66 ~----~~~~~~~~L~~Gk~VIID~-tnl~~~~R~~-~-------~~l-~~-----~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .    ....+.+....|+..|+-+ |+++-+.-.. +       ..- +.     ..+...+++++.+.+++.+|+.+|-
T Consensus       117 ~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rv  196 (334)
T PLN02165        117 EFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRV  196 (334)
T ss_pred             HHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHH
Confidence            1    2244455566777655544 4433221111 0       000 11     1244567889999999999999996


Q ss_pred             c
Q 007244          127 E  127 (611)
Q Consensus       127 ~  127 (611)
                      .
T Consensus       197 d  197 (334)
T PLN02165        197 D  197 (334)
T ss_pred             H
Confidence            5

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.78  E-value=7e-05  Score=67.47  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=43.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH-HHHHHHHHCC--CcEEEec
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKKG--KSVFLDR   85 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~-~~~~~~L~~G--k~VIID~   85 (611)
                      |+|.||||+||||+++.+++.++.++..++...+.........+.+ ..+..+-..+  ..++||.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe   66 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE   66 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence            6899999999999999999999977778887777644444443333 3333333333  3466666

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.77  E-value=7.8e-05  Score=61.34  Aligned_cols=61  Identities=21%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-   99 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-   99 (611)
                      +|+++|+|||||||+++.+.+.++ ..+..++.                          .+|+|+.......+.  ..+ 
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------------~~I~eg~~~~~~~~~--~~~~   52 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------------IVILEGLYASYKSRD--ARIR   52 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------------EEEecchhhhhhhHH--hhcc
Confidence            478999999999999999998852 22333433                          788888666555543  222 


Q ss_pred             CCCCCeEEEEEEeC
Q 007244          100 GGPEVDVHAVVLDL  113 (611)
Q Consensus       100 ~~~~~~v~vV~Ld~  113 (611)
                      ...+.   .||+++
T Consensus        53 ~~~d~---~Iyld~   63 (69)
T cd02019          53 DLADL---KIYLDA   63 (69)
T ss_pred             ccccE---EEEEEe
Confidence            23333   666665

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=97.74  E-value=6.4e-06  Score=73.72  Aligned_cols=70  Identities=10%  Similarity=0.143  Sum_probs=55.4

Q ss_pred             ccccccccccccceeecccccc-cccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHH
Q 007244          231 ITEEKNSCLEGQEITSLLSDAA-GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVI  300 (611)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Ii  300 (611)
                      +...++.+.++.|.+.|.+... ..+....+...-..|+..+.+++++|||||+|+||++|||.+++++|+
T Consensus        48 t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~  118 (118)
T PF01661_consen   48 TPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM  118 (118)
T ss_dssp             EEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred             ecCCCccccceEEEecceeccccccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence            4556777999999998888531 133334444566678888999999999999999999999999999986

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.73  E-value=0.00031  Score=72.82  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK   58 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~   58 (611)
                      +|.++|.|||||||+++++.+.++   .....|+.|.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            578999999999999999887654   3467888888753

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PHA00729 NTP-binding motif containing protein

Probab=97.70  E-value=0.0002  Score=72.54  Aligned_cols=105  Identities=12%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--cc---CCCCcHHHHHHHHHHHHHCC---CcEEEecCCCCH-
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--NK---GKSGTKVQCLTSASSALKKG---KSVFLDRCNLER-   90 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i--~~---~~~~~~~~~~~~~~~~L~~G---k~VIID~tnl~~-   90 (611)
                      ...|+|+|+||+||||+|.+++..++.....+..+..  ..   ..+.....+...+..++...   ..+|||....-. 
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~   96 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLS   96 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhc
Confidence            3579999999999999999999886522222222211  11   12223444555555555443   236999822111 


Q ss_pred             ---HHH---HHHHHh----C-CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           91 ---EQR---TDFVKL----G-GPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        91 ---~~R---~~~~~l----~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         +.+   ..+..+    + ...   .+++..++.+.|.+|+..|+.
T Consensus        97 ~~~wh~~~~~~yf~L~~aLrSR~~---l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         97 KYVWYEDYMKTFYKIYALIRTRVS---AVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             ccchhhhccchHHHHHHHHHhhCc---EEEEecCCHHHHHHHHHhCCC
Confidence               111   122222    1 222   377888999999999999976

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.70  E-value=0.00016  Score=73.79  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=75.1

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC--------------------C-------------C
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG--------------------K-------------S   61 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~--------------------~-------------~   61 (611)
                      .+-..|.+|++-|+||.||||+|..++.+++... .|+.|.|++=                    |             .
T Consensus        84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia  162 (299)
T COG2074          84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA  162 (299)
T ss_pred             hccCCCeEEEecCCCCCChhHHHHHHHHHcCCce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence            3456799999999999999999999999999654 5788877420                    0             0


Q ss_pred             CcHHH---H----HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244           62 GTKVQ---C----LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEV-DVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        62 ~~~~~---~----~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +..++   +    -..+.+++.+|.++||++.++-+.....-   .. +. .+.+++.-.+.++...|.-.|.+
T Consensus       163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~---~~-~~n~~~~~l~i~dee~Hr~RF~~R~~  232 (299)
T COG2074         163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE---AL-GNNVFMFMLYIADEELHRERFYDRIR  232 (299)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh---hh-ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence            00111   1    15668999999999999988776544432   22 22 23344445677888889988865

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=97.64  E-value=0.00056  Score=70.48  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhccC-------------------------------CCCc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINKG-------------------------------KSGT   63 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~D~i~~~-------------------------------~~~~   63 (611)
                      ....-++|++-|+-|||||+||+.|+++++.. |..+..|.+.-+                               ....
T Consensus        67 f~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa  146 (393)
T KOG3877|consen   67 FHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSA  146 (393)
T ss_pred             hcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHH
Confidence            34556899999999999999999999999832 233344444100                               0000


Q ss_pred             ----------HHHHHHHHHHHHHCCCcEEEecCCCCH-----HH----------HHHHHHhCCC-----CCeEEEEEEeC
Q 007244           64 ----------KVQCLTSASSALKKGKSVFLDRCNLER-----EQ----------RTDFVKLGGP-----EVDVHAVVLDL  113 (611)
Q Consensus        64 ----------~~~~~~~~~~~L~~Gk~VIID~tnl~~-----~~----------R~~~~~l~~~-----~~~v~vV~Ld~  113 (611)
                                ..+..+++.-.|..|..||++.+++..     ..          +..+-.++..     =-+-.+||+|+
T Consensus       147 ~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~  226 (393)
T KOG3877|consen  147 AMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT  226 (393)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence                      112336777788899999999977654     11          1112122111     11346999999


Q ss_pred             CHHHHHHHHHhccc
Q 007244          114 PAKLCISRSVKRIE  127 (611)
Q Consensus       114 p~e~~~~Rl~~R~~  127 (611)
                      |.+.+++|+.+|+.
T Consensus       227 Pv~~v~~~Ik~rg~  240 (393)
T KOG3877|consen  227 PVNKVLENIKRRGN  240 (393)
T ss_pred             CcHHHHHHHHhcCC
Confidence            99999999999976

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.58  E-value=0.00088  Score=67.86  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      +.+|.+.|+|||||||+++.+++.++..  +++.+.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~--~~~~~~   37 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFH--YLDTGA   37 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCC--cccCch
Confidence            4789999999999999999999999843  365544

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.56  E-value=0.0019  Score=64.77  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      .+|-+=||+||||||+|+.+++.++..  +++.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~--yldT   35 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFH--YLDT   35 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCC--eecc
Confidence            678999999999999999999999944  4663

>PRK13976 thymidylate kinase; Provisional

Probab=97.53  E-value=0.001  Score=66.69  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCC----eEEeec--------chhcc-----CCCCcHH-----------HHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARP----WARICQ--------DTINK-----GKSGTKV-----------QCLTSASS   73 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~----~~~Is~--------D~i~~-----~~~~~~~-----------~~~~~~~~   73 (611)
                      +|++-|+.||||||+++.|.+.+...    -+++..        ..+++     .......           .+...+..
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p   81 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILP   81 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999998776421    122221        11111     1111111           11244677


Q ss_pred             HHHCCCcEEEecCCCCHHHHHH--------HH-Hh-C--CCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           74 ALKKGKSVFLDRCNLEREQRTD--------FV-KL-G--GPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl~~~~R~~--------~~-~l-~--~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      +|..|..||.|...++.-..+.        |+ .+ .  ....+=.+|+|++|.+++.+|..+|.
T Consensus        82 ~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~  146 (209)
T PRK13976         82 ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNG  146 (209)
T ss_pred             HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccc
Confidence            8899999999996555422221        22 22 1  11123468899999999999986543

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.50  E-value=0.0011  Score=64.10  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=25.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      +.+++++|.||+||||+.+...+.+ ..+..++
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivN   35 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVN   35 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH-hhceeee
Confidence            5789999999999999999988877 1233455

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.48  E-value=0.00078  Score=64.38  Aligned_cols=114  Identities=19%  Similarity=0.213  Sum_probs=80.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----------cCC---------CCcH---------HH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------KGK---------SGTK---------VQ   66 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----------~~~---------~~~~---------~~   66 (611)
                      ..++..+|+|-|.|.+|||++|..+..-+..+|.+|.-|.+-           .+.         -.++         +.
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~   98 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL   98 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence            556778999999999999999999988887888888766552           110         0000         11


Q ss_pred             ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                          ....+...+..|-++|.|....++..--..+++ ..++.+++|=+.+|.|+..+|-..|..+.+
T Consensus        99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~-l~g~~v~~VGV~~p~E~~~~Re~rr~dR~p  165 (205)
T COG3896          99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRV-LEGCRVWMVGVHVPDEEGARRELRRGDRHP  165 (205)
T ss_pred             HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHH-HhCCceEEEEeeccHHHHHHHHhhcCCcCc
Confidence                114455566788999999977665444433333 456788899999999999999877876543

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00061  Score=67.42  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      -.||-|.|.+.|||||+|+.+.+-++. ...|++|+++
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~-~~lIhqDDFy   40 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPG-CSLIHQDDFY   40 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccC-Ceeecccccc
Confidence            357889999999999999999888774 3478999885

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=97.37  E-value=0.0024  Score=65.56  Aligned_cols=100  Identities=18%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHH--HHC---CCcEEEecCCCCH-HHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA--LKK---GKSVFLDRCNLER-EQRT   94 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~--L~~---Gk~VIID~tnl~~-~~R~   94 (611)
                      .+|+++|++|||||+-++.+ +.+|  |+.++  .+      +..-+-+.+.-.  ...   .-.|++|.-+..- ..-.
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlG--yycvD--NL------Pp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~   70 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLG--YYCVD--NL------PPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLE   70 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcC--eeeec--CC------CHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHH
Confidence            47999999999999988866 6777  64443  32      221111222211  111   1238899866532 2333


Q ss_pred             HHHHh-CCC-CCeEEEEEEeCCHHHHHHHHH-hcccccCC
Q 007244           95 DFVKL-GGP-EVDVHAVVLDLPAKLCISRSV-KRIEHEGN  131 (611)
Q Consensus        95 ~~~~l-~~~-~~~v~vV~Ld~p~e~~~~Rl~-~R~~~~g~  131 (611)
                      .++.- +.. ++.+.++||+.+.+++.+|-. .|..|+..
T Consensus        71 ~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~  110 (286)
T COG1660          71 EVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLS  110 (286)
T ss_pred             HHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCC
Confidence            44444 444 466899999999999999974 56677654

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.35  E-value=0.0014  Score=69.55  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=30.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .++.+|+++||+||||||+|..|++.++.  .+|+.|.+
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~~--~iis~Ds~   38 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLNG--EIISADSM   38 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCCC--cEEecccc
Confidence            35679999999999999999999999874  34666653

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.31  E-value=0.00068  Score=73.17  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLT   69 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~   69 (611)
                      -..|.++.|.||||+|||.+|+.++++++..++.++...+...+.++.+..+.
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR  197 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIR  197 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHH
Confidence            46789999999999999999999999999888999999999999998776543

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=97.31  E-value=9.3e-05  Score=69.17  Aligned_cols=103  Identities=12%  Similarity=0.036  Sum_probs=70.7

Q ss_pred             CchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccc-cccccceeeccccccc-ccccCCCCcchhhhcccCC
Q 007244          195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNS-CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~  272 (611)
                      .....++.+.+.+++.........|++..       +...+.+ +...-|.+.+.+.... ..........-.+|+..+.
T Consensus        36 i~~~~g~~~~~~~~~~~~~~~~~~G~~~~-------t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~  108 (147)
T cd02749          36 ISKKAGKELEEESKKLRKELELQVGEAVL-------TKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAE  108 (147)
T ss_pred             HHHHhCHHHHHHHHHHhcccCCCCCCEEE-------CcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            33444566777776665443233344422       3344566 8999999998887622 1122233345566778888


Q ss_pred             CCCCCccccccCccCCCCC------ChHHHHHHHHHHH
Q 007244          273 SSDVPTLAFPSLSTSDFQF------NNEKASDVIIEKV  304 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gf------P~~~aa~Iiv~tv  304 (611)
                      ..++.|||||.||||++||      |.+.+++|+..++
T Consensus       109 ~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~  146 (147)
T cd02749         109 EKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA  146 (147)
T ss_pred             HcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence            8899999999999999999      9999999998875

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.29  E-value=0.00075  Score=59.71  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecch
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDT   55 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~   55 (611)
                      +..++|+|||||||||+++.++..+...   ...++.+.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~   40 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED   40 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence            4579999999999999999999988754   55555443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.25  E-value=0.00031  Score=68.15  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      +|+++|+|||||||||.+++..++.++..+..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            68999999999999999999987755544543

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.20  E-value=0.007  Score=70.73  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .+|.+.||+||||||+++.|+++++.  .+++.+.+
T Consensus       443 ~~i~i~g~~~~gks~~~~~l~~~~~~--~~~~~~~~  476 (661)
T PRK11860        443 PVICIDGPTASGKGTVAARVAEALGY--HYLDSGAL  476 (661)
T ss_pred             ceEEeeCCCCCCHHHHHHHHHHHhCC--eEecHHHh
Confidence            47888999999999999999999994  44776555

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.17  E-value=0.0018  Score=58.02  Aligned_cols=81  Identities=16%  Similarity=0.296  Sum_probs=44.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHHH-----HHHHHHHHHHCCCcEEEecCCCC-
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQ-----CLTSASSALKKGKSVFLDRCNLE-   89 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~~-----~~~~~~~~L~~Gk~VIID~tnl~-   89 (611)
                      ....+++.|+||+||||+++.+...+   +..+..++...+..........     ..............+|+|....- 
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~   97 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS   97 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence            45578999999999999999999886   4445455443332211111100     00111222234456899996643 


Q ss_pred             HHHHHHHHHh
Q 007244           90 REQRTDFVKL   99 (611)
Q Consensus        90 ~~~R~~~~~l   99 (611)
                      ......+..+
T Consensus        98 ~~~~~~~~~~  107 (151)
T cd00009          98 RGAQNALLRV  107 (151)
T ss_pred             HHHHHHHHHH
Confidence            2333444443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.16  E-value=0.0018  Score=64.28  Aligned_cols=39  Identities=26%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~   58 (611)
                      |.+|+|+||+|+||||.+-+|+..+   +.....|+.|.+|-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence            7899999999999999888887643   44566788888863

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK09087 hypothetical protein; Validated

Probab=97.14  E-value=0.0028  Score=64.33  Aligned_cols=121  Identities=16%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--------------cC---CCCcHHHHHHHHHHHHHCCCcEEE
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KG---KSGTKVQCLTSASSALKKGKSVFL   83 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--------------~~---~~~~~~~~~~~~~~~L~~Gk~VII   83 (611)
                      ..++|+|++||||||+++.+.+..+..|  ++.+.+.              ++   .......++..+-.....|+.+|+
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ili  122 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLM  122 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence            3589999999999999999987765333  4432111              00   011233455555556666777777


Q ss_pred             ecCCCCHHHHHHHHHh--C-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           84 DRCNLEREQRTDFVKL--G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l--~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      -++..........-++  + ..+.   ++.+..|.++.+..+.+|.-..  +.-.++++++.-+.+.+
T Consensus       123 ts~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~~--~~~~l~~ev~~~La~~~  185 (226)
T PRK09087        123 TSRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFAD--RQLYVDPHVVYYLVSRM  185 (226)
T ss_pred             ECCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHh
Confidence            6643222221111111  1 1222   5566655544444333332211  11256777777777665

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.14  E-value=0.0053  Score=61.70  Aligned_cols=127  Identities=16%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------------------cCCCCcHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------------------KGKSGTKVQCLT   69 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------------------~~~~~~~~~~~~   69 (611)
                      .|++++||+|+|||.+|-.++++++.+  +|+.|.+.                               +|. ....+..+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~p--vI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~   78 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAP--VISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHE   78 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--E--EEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCC--EEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHH
Confidence            478999999999999999999999944  46665551                               011 12223333


Q ss_pred             HHHHHH---HCCCcEEEecCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           70 SASSAL---KKGKSVFLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        70 ~~~~~L---~~Gk~VIID~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~-e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                      .+...+   ..++.+|+++-..+.  -..+.+-  -..++.+++.++..+. +....|..+|-+..-. ++.....++..
T Consensus        79 ~Li~~v~~~~~~~~~IlEGGSISL--l~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~-p~~~~~Sll~E  155 (233)
T PF01745_consen   79 RLISEVNSYSAHGGLILEGGSISL--LNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR-PDSSGPSLLEE  155 (233)
T ss_dssp             HHHHHHHTTTTSSEEEEEE--HHH--HHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS---SSS--HHHH
T ss_pred             HHHHHHHhccccCceEEeCchHHH--HHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC-CCCCCCcHHHH
Confidence            333333   346789999944332  2222222  3367889999998876 5666788777653211 11223356666


Q ss_pred             HHhhccCCCc
Q 007244          144 MLQKKELPKL  153 (611)
Q Consensus       144 m~~~~e~P~~  153 (611)
                      +...+..|..
T Consensus       156 L~~lW~~p~~  165 (233)
T PF01745_consen  156 LVALWNDPAL  165 (233)
T ss_dssp             HHHHHTSTTH
T ss_pred             HHHHHhCccc
Confidence            6666655553

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.13  E-value=0.0033  Score=62.40  Aligned_cols=110  Identities=23%  Similarity=0.277  Sum_probs=68.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------------CC----------CC---
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GK----------SG---   62 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------------~~----------~~---   62 (611)
                      .+|-|+|-.||||||+++.+. .++  +.+|+.|.+.+                         |.          |.   
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~   78 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALG--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK   78 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcC--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence            378899999999999999765 777  44588776621                         00          00   


Q ss_pred             --------c----HHHHHHHHHHHHHCCCc-EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           63 --------T----KVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        63 --------~----~~~~~~~~~~~L~~Gk~-VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                              +    +.+.++++...+..|.. +|+|..-+-+.   .+.++  .+   .+|.+-|+.++-++|+..|+.  
T Consensus        79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~~~~--~~---~tvvV~cd~~~Ql~Rl~~Rd~--  148 (225)
T KOG3220|consen   79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KLLKI--CH---KTVVVTCDEELQLERLVERDE--  148 (225)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hHHhh--ee---eEEEEEECcHHHHHHHHHhcc--
Confidence                    0    11233666777778866 56666333222   23222  22   377778899999999999984  


Q ss_pred             CCCCCCCHHHHHHHHHhhc
Q 007244          130 GNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus       130 g~~~~~vpeevi~rm~~~~  148 (611)
                           -..++.-.|...+.
T Consensus       149 -----lse~dAe~Rl~sQm  162 (225)
T KOG3220|consen  149 -----LSEEDAENRLQSQM  162 (225)
T ss_pred             -----ccHHHHHHHHHhcC
Confidence                 23344445555543

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.11  E-value=0.0012  Score=66.77  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=43.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFV   97 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~   97 (611)
                      .--++|.||||.||||+|+-++++++..+..++...+..     ..++ ..+...+..+....||-.+.-....++++
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~~dl-~~il~~l~~~~ILFIDEIHRlnk~~qe~L  121 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----AGDL-AAILTNLKEGDILFIDEIHRLNKAQQEIL  121 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----CHHH-HHHHHT--TT-EEEECTCCC--HHHHHHH
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----HHHH-HHHHHhcCCCcEEEEechhhccHHHHHHH
Confidence            346899999999999999999999997776666543321     1112 22334567777888999876655555544

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.10  E-value=0.0048  Score=68.21  Aligned_cols=41  Identities=34%  Similarity=0.494  Sum_probs=33.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..+|.+|+|+|++||||||.+.+|+..+   +.....++.|.++
T Consensus        97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            3568999999999999999999987654   4455678888775

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=97.09  E-value=0.00012  Score=67.03  Aligned_cols=67  Identities=6%  Similarity=0.018  Sum_probs=51.0

Q ss_pred             cccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHH
Q 007244          234 EKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVI  300 (611)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Ii  300 (611)
                      .++.+....|.+.|.+..+.....+.....-.+|+..+...+++|||||+|+||++|||.+++++++
T Consensus        67 ~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~  133 (133)
T smart00506       67 GNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL  133 (133)
T ss_pred             CCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence            3467888999988888752212223333344557788888999999999999999999999999874

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.09  E-value=0.0012  Score=74.14  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=41.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~   68 (611)
                      +.|.-|+|.||||+|||.+|+.++..++.++..++...+..++.+..+..+
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l  307 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM  307 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence            456789999999999999999999999988888887777777666654433

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.00091  Score=70.90  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=74.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHH---HcCCCeEEeecchhccCCCC-------cHHHHH---HHHHHHH-HCCCcEEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMR---SSARPWARICQDTINKGKSG-------TKVQCL---TSASSAL-KKGKSVFLD   84 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~---~~~~~~~~Is~D~i~~~~~~-------~~~~~~---~~~~~~L-~~Gk~VIID   84 (611)
                      ...-|+|.|++|+||||+.-+|.+   .++.+...++.|.|+.+...       .+++.+   ..+.... ..|-.+|-.
T Consensus        49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcits  128 (627)
T KOG4238|consen   49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITS  128 (627)
T ss_pred             cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeeh
Confidence            346789999999999999887755   45678888999999865211       122222   3333333 344444443


Q ss_pred             cCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      -.....++|...+++ ...+.+..-|+++.|+++|..|..+
T Consensus       129 fispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k  169 (627)
T KOG4238|consen  129 FISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK  169 (627)
T ss_pred             hcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence            344555889999999 8888888999999999999998654

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0022  Score=67.68  Aligned_cols=26  Identities=27%  Similarity=0.769  Sum_probs=24.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+||+|.||||.|||++|+.|++++.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            47899999999999999999999865

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0044  Score=66.84  Aligned_cols=53  Identities=21%  Similarity=0.335  Sum_probs=43.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS   73 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~   73 (611)
                      +-|+|+||||+|||-+|++++.+.+..|+-|+.-.+-..|.++.+.+...+.+
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFe  298 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFE  298 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHH
Confidence            35899999999999999999999997788888878877888887766554443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.06  E-value=0.0082  Score=70.72  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +|.|.|||||||||+|+.|++.++  |.+++...+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~--~~~~~~g~~   35 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLG--YAYLDTGAM   35 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEeecCcE
Confidence            689999999999999999999998  444654433

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.04  E-value=0.0021  Score=66.65  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=64.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CC-eEEeecchhc--------------cCCCCcHH-HHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RP-WARICQDTIN--------------KGKSGTKV-QCLTSASSAL   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~-~~~Is~D~i~--------------~~~~~~~~-~~~~~~~~~L   75 (611)
                      ....|.+|.++|+||+||||.|+.+...+.    .+ ...|..|-+-              .|...+.+ ..+-.....+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v  157 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV  157 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence            456789999999999999999999876543    11 3344555441              12111211 1111222233


Q ss_pred             HCC---------------------------CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ~~G---------------------------k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +.|                           +.+|+++-|+-. .+..|..+ ...++   -||+|++.+.+.+|...|--
T Consensus       158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq-~~~p~~~~sdffDf---SIyvDa~~~~le~wyi~Rfl  233 (283)
T COG1072         158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQ-DGEPWLFLSDFFDF---SIYVDADEELLEERYIERFL  233 (283)
T ss_pred             hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhc-CCCccccccccceE---EEEecCCHHHHHHHHHHHHH
Confidence            322                           236777744332 22255444 33444   88999999999999999965


Q ss_pred             c
Q 007244          128 H  128 (611)
Q Consensus       128 ~  128 (611)
                      .
T Consensus       234 ~  234 (283)
T COG1072         234 K  234 (283)
T ss_pred             h
Confidence            3

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0011  Score=69.25  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             cCCCc-EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCc
Q 007244           16 KKWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS   80 (611)
Q Consensus        16 ~~~~p-~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~   80 (611)
                      .+..| .-|+|-||||.|||++|++++-+.+-.|..|+.-++-..|+++.+.+...+.+..++.+.
T Consensus       161 GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kP  226 (439)
T KOG0739|consen  161 GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKP  226 (439)
T ss_pred             CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence            34444 578999999999999999999988877778888788888999998888777777777765

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.96  E-value=0.0016  Score=71.23  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=35.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~   62 (611)
                      ..|.-|+|.||||+|||++|+.++..++..+..++...+...+.+
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g  207 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG  207 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence            456779999999999999999999999877777765555433333

>PRK10867 signal recognition particle protein; Provisional

Probab=96.96  E-value=0.0076  Score=66.87  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~   57 (611)
                      .++|.+|+|+|++||||||++.+|+..+    +.....|+.|.++
T Consensus        97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R  141 (433)
T PRK10867         97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR  141 (433)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence            4568999999999999999888876543    4456678888765

>PRK14974 cell division protein FtsY; Provisional

Probab=96.95  E-value=0.0063  Score=65.38  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..+|.+|+|+|+||+||||.+.+++..+   +.....++.|.++
T Consensus       137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R  180 (336)
T PRK14974        137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR  180 (336)
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence            3468999999999999999888876543   3334456777664

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.94  E-value=0.0046  Score=55.88  Aligned_cols=95  Identities=21%  Similarity=0.280  Sum_probs=51.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc--------CCCeEEeecch------h--------ccC-CC-CcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS--------ARPWARICQDT------I--------NKG-KS-GTKVQCLTSASSA   74 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~--------~~~~~~Is~D~------i--------~~~-~~-~~~~~~~~~~~~~   74 (611)
                      .+.++++.|+||+|||++++.+.+.+        ......++...      +        ... .. .....+.+.+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            45689999999999999999999876        33333443211      1        111 11 2345566777788


Q ss_pred             HHCCCc--EEEecCCC--CHHHHHHHHHhCCCCCeEEEEEEeCC
Q 007244           75 LKKGKS--VFLDRCNL--EREQRTDFVKLGGPEVDVHAVVLDLP  114 (611)
Q Consensus        75 L~~Gk~--VIID~tnl--~~~~R~~~~~l~~~~~~v~vV~Ld~p  114 (611)
                      +.....  +|||....  ....-..+..+.. ...+.+|++-.|
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence            877764  88898443  2223333334422 334455554443

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.94  E-value=0.0062  Score=64.11  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH------HCCCcEEEecCCCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL------KKGKSVFLDRCNLE   89 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L------~~Gk~VIID~tnl~   89 (611)
                      ....|.++++.|+||+||||+++.+++..+..+..++... .  .   .......+...+      ...+.+|||....-
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~---~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l  112 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--R---IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL  112 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--c---HHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence            3456789999999999999999999988775555555433 1  1   111111121111      24466899985422


Q ss_pred             --HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           90 --REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        90 --~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                        ......+..+ ........+|+..-....+...+..|-
T Consensus       113 ~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~  152 (316)
T PHA02544        113 GLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC  152 (316)
T ss_pred             cCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence              2333444444 433333334443333344555555554

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.93  E-value=0.016  Score=55.61  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      +++++|+|||||||++..++..+   +.....++.|.+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            68999999999999999987654   444566777755

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00959 ffh signal recognition particle protein

Probab=96.93  E-value=0.0077  Score=66.73  Aligned_cols=41  Identities=27%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~   57 (611)
                      ..+|.+++++|++||||||++.+++..+    +.....++.|.++
T Consensus        96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R  140 (428)
T TIGR00959        96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR  140 (428)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            3568999999999999999988887653    3456678888765

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.90  E-value=0.0087  Score=61.69  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=22.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...-++|.||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            334568899999999999999998764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0071  Score=64.01  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=71.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cC----------------------C-----CCcHHH---
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KG----------------------K-----SGTKVQ---   66 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~----------------------~-----~~~~~~---   66 (611)
                      +-++|+++|+.|||||-++-.|+.+++  .-+|+.|.+.  .|                      .     -.+..+   
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~--~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFP--GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCC--ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence            568999999999999999999999988  4457766552  10                      0     001112   


Q ss_pred             -HHHHHHHHHHCCCc-EEEecCCCCHHHHHHH-H--H----------h-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           67 -CLTSASSALKKGKS-VFLDRCNLEREQRTDF-V--K----------L-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        67 -~~~~~~~~L~~Gk~-VIID~tnl~~~~R~~~-~--~----------l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       ....+.+..++|+. +|+=++|++-..--.- .  .          + .+..|...+++++++..++.+|+-+|-.
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD  160 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVD  160 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHH
Confidence             23566777788875 6666677654221110 0  0          1 1223567899999999999999999976

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.85  E-value=0.0096  Score=62.15  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..++.+|+|+|++|+||||.+.+|+..+   +.....++.|.++
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r  112 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR  112 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            4557899999999999999999987654   3345567777653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.85  E-value=0.0033  Score=68.09  Aligned_cols=80  Identities=19%  Similarity=0.326  Sum_probs=49.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCc--EEEecCC-CCHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDRCN-LEREQRTDFV   97 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~--VIID~tn-l~~~~R~~~~   97 (611)
                      .=.+|.||||+||||+|+.++..++..|..++.-.-  + ...-.++++.+++.+..|+.  .+||-.+ +++.+..-++
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--g-vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL  125 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--G-VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL  125 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--c-HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence            345799999999999999999999877766664111  0 01122345666566665654  5677766 3444444443


Q ss_pred             HhCCCC
Q 007244           98 KLGGPE  103 (611)
Q Consensus        98 ~l~~~~  103 (611)
                      -.-+.|
T Consensus       126 p~vE~G  131 (436)
T COG2256         126 PHVENG  131 (436)
T ss_pred             hhhcCC
Confidence            333333

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.84  E-value=0.0025  Score=70.00  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      ..|.-|+|.||||+|||++|+.++...+..+..+..
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~  212 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG  212 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence            457789999999999999999999998877766654

>PRK06620 hypothetical protein; Validated

Probab=96.83  E-value=0.0084  Score=60.31  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..++|.||||||||++++.+.+..+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            4589999999999999999877665

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.83  E-value=0.0081  Score=66.73  Aligned_cols=40  Identities=28%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..|.+|+|+|++|+||||++.+++..+   +.....++.|.++
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R  135 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR  135 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence            568999999999999999999987654   3345567777764

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0017  Score=73.17  Aligned_cols=53  Identities=15%  Similarity=0.289  Sum_probs=42.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~   71 (611)
                      .|.=|+|+||||||||-+|++++.+.+..|..|-...+.+.+.++.+.....+
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~v  596 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQV  596 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHH
Confidence            47889999999999999999999999988877877777777777665544333

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.81  E-value=0.015  Score=62.12  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~   57 (611)
                      .+|.+|+|+||+||||||++.+|+..+.   .....++.|.++
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            4688999999999999999999876543   345566777654

>PF13173 AAA_14: AAA domain

Probab=96.80  E-value=0.005  Score=56.38  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=46.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHHHHHHHHHHHH-CCCcEEEecCCCCHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALK-KGKSVFLDRCNLEREQRTDFV   97 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-~Gk~VIID~tnl~~~~R~~~~   97 (611)
                      .+++|.||.|+||||+++++++.+.  ..+..++.|........... +.+.+.+... ....++||.....+.....+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk   81 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALK   81 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence            5799999999999999999998765  34555666555432111111 2233333332 345689999665554333333


Q ss_pred             Hh
Q 007244           98 KL   99 (611)
Q Consensus        98 ~l   99 (611)
                      .+
T Consensus        82 ~l   83 (128)
T PF13173_consen   82 FL   83 (128)
T ss_pred             HH
Confidence            33

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.80  E-value=0.01  Score=57.13  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=22.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++.=|+++|+||+||||++.++++.+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            455699999999999999999987643

>PHA03132 thymidine kinase; Provisional

Probab=96.78  E-value=0.019  Score=65.55  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=23.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..+|+|=|+-||||||+++.|.+.++
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg  282 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILG  282 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            67999999999999999999998874

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.78  E-value=0.0075  Score=61.36  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++|.||||+|||+++..+....
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999887653

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.78  E-value=0.0031  Score=70.07  Aligned_cols=39  Identities=23%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..|.-++|.||||+|||++|+.++..++..+..+....+
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL  253 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL  253 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence            456678899999999999999999998877766654444

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0026  Score=71.82  Aligned_cols=69  Identities=23%  Similarity=0.357  Sum_probs=53.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCC--cEEEec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR   85 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk--~VIID~   85 (611)
                      -.+|.=|+|-||||||||.||+.++.+++.++..|+.-.+-.|..++.++-+..+.+.....-  .++||.
T Consensus       220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe  290 (802)
T KOG0733|consen  220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE  290 (802)
T ss_pred             CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeec
Confidence            456778999999999999999999999999999999888888888887766555544444332  245554

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=96.77  E-value=0.018  Score=63.16  Aligned_cols=132  Identities=15%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc---------CCC--------CcHHHH----HHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK---------GKS--------GTKVQC----LTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~---------~~~--------~~~~~~----~~~~   71 (611)
                      ...-+.+|+|+|+|++|||.++.++-+-+.   .....++.-.+++         ..+        .-+.++    ...+
T Consensus        24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~  103 (438)
T KOG0234|consen   24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL  103 (438)
T ss_pred             ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence            456689999999999999999999877654   1111122111211         011        011122    2333


Q ss_pred             HHHHH--CCCcEEEecCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHh-cccccCCCCCCCHHHHHHHHHh
Q 007244           72 SSALK--KGKSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVK-RIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        72 ~~~L~--~Gk~VIID~tnl~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~Rl~~-R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ...+.  .|..+|.|+||.++..|..+..+ + ..+..+.+|---+....++.+++. +....+...+-..+++++-+.+
T Consensus       104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl~  183 (438)
T KOG0234|consen  104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFLK  183 (438)
T ss_pred             HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHHH
Confidence            34443  56789999999999999999999 6 788888888877888888888776 5444333444456666665554


Q ss_pred             h
Q 007244          147 K  147 (611)
Q Consensus       147 ~  147 (611)
                      +
T Consensus       184 r  184 (438)
T KOG0234|consen  184 R  184 (438)
T ss_pred             H
Confidence            4

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.77  E-value=0.0026  Score=68.79  Aligned_cols=35  Identities=23%  Similarity=0.476  Sum_probs=29.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      .|.-++|.||||+|||++|+.++..++..+..+..
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~  189 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG  189 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence            45669999999999999999999998877765543

Many proteins may score above the trusted cutoff because an internal

>PLN02840 tRNA dimethylallyltransferase

Probab=96.76  E-value=0.0049  Score=67.86  Aligned_cols=40  Identities=23%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             cccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        14 ~~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      ..+..++.+|+|+||+||||||++..|++.++..+  |+.|.
T Consensus        15 ~~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~i--is~Ds   54 (421)
T PLN02840         15 ASKTKKEKVIVISGPTGAGKSRLALELAKRLNGEI--ISADS   54 (421)
T ss_pred             cccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCe--Eeccc
Confidence            34556667999999999999999999999988544  55444

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.71  E-value=0.0099  Score=66.57  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---EEe---e-----------cchhc-cC-CCCcHHH---HHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---ARI---C-----------QDTIN-KG-KSGTKVQ---CLTSASS   73 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---~~I---s-----------~D~i~-~~-~~~~~~~---~~~~~~~   73 (611)
                      ....+..++|+||||+||||+|+.+++.++...   ...   +           .|.+. +. .....+.   +.+.+..
T Consensus        36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~  115 (484)
T PRK14956         36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF  115 (484)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh
Confidence            344577899999999999999999999876311   000   0           01111 00 0000111   1122221


Q ss_pred             HHHCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           74 ALKKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        74 ~L~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .-..|  +.+|||... ++......+++. .+....+.+|+.-...+.+..++..|-
T Consensus       116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC  172 (484)
T PRK14956        116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC  172 (484)
T ss_pred             hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence            11223  468999855 444555666666 666666666666666666667777774

>CHL00181 cbbX CbbX; Provisional

Probab=96.69  E-value=0.019  Score=60.41  Aligned_cols=67  Identities=16%  Similarity=0.251  Sum_probs=40.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhccCCCCcHHH-HHHHHHHHHHCCCcEEEecCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~~~~~~~~~~-~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      .+.-++|.|+||+||||+|+.+++.+.       .++..++.+.+.....+.... ....+.+  ..|..++||...
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~~  132 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEAY  132 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEccc
Confidence            345589999999999999999977542       235566666554333332211 1122222  245677888743

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.62  E-value=0.002  Score=59.35  Aligned_cols=30  Identities=40%  Similarity=0.719  Sum_probs=26.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      |+|+|+||+|||++++.+++.++.++..+.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~   31 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIRIN   31 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence            789999999999999999999986665554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.62  E-value=0.02  Score=63.26  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~   57 (611)
                      .++.+++++||+||||||++.+|+..+    +.....++.|.++
T Consensus       221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            357899999999999999999998654    2334567777764

>PRK12377 putative replication protein; Provisional

Probab=96.60  E-value=0.0065  Score=62.63  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCCcHH--HHHHHHHHHHHCCCcEEEecCC---CCHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCN---LERE   91 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~~~~--~~~~~~~~~L~~Gk~VIID~tn---l~~~   91 (611)
                      ..-++|.|+||+|||++|..++..+.   .....++..++.......+.  .....+.+.+..-..+|||...   .+..
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~  180 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKN  180 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHH
Confidence            35789999999999999999887653   33334443333211000000  0113445666777789999963   4445


Q ss_pred             HHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHHH
Q 007244           92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        92 ~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      ....+..+  ..+. ....+|--..+.+.+.+++.
T Consensus       181 ~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~  215 (248)
T PRK12377        181 EQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG  215 (248)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhh
Confidence            55555555  3222 23446666777777765443

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.60  E-value=0.014  Score=67.35  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      ..+..++.+|+||||-||||+|.-++++.|...+.|+
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEIN  358 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN  358 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEec
Confidence            4566689999999999999999999999995555555

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.60  E-value=0.014  Score=63.26  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=61.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe---------e--------cchhc-cC-CCCcHHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI---------C--------QDTIN-KG-KSGTKVQCLTSASSALK   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I---------s--------~D~i~-~~-~~~~~~~~~~~~~~~L~   76 (611)
                      ....|..++|.||||+||||+|+.+++.+.......         +        .|.+. +. .....++ +..+.+.+.
T Consensus        34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~  112 (363)
T PRK14961         34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIY  112 (363)
T ss_pred             cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHh
Confidence            345678899999999999999999999875211000         0        01110 00 0011122 222222222


Q ss_pred             ------CCCcEEEecCCCC-HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 ------KGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 ------~Gk~VIID~tnl~-~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                            ..+.+|||....- ......+++. .+.+..+.+|+.....+.+..++..|-.
T Consensus       113 ~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~  171 (363)
T PRK14961        113 YSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCL  171 (363)
T ss_pred             cCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhce
Confidence                  1246899885433 2334456666 5555555566666666667777777754

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0048  Score=69.37  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~   76 (611)
                      -..|..++|.||||+|||++|++++...+.++..+..-.+-..|.++.+..+..+.+..+
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~  332 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR  332 (494)
T ss_pred             CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH
Confidence            456779999999999999999999998887787777667778888887766655544444

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.59  E-value=0.008  Score=67.49  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..|..++|.||||+||||+|+.+++.++
T Consensus        32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         32 KNSISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345567899999999999999999998865

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.54  E-value=0.0043  Score=68.23  Aligned_cols=43  Identities=19%  Similarity=0.482  Sum_probs=36.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-CCCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG   62 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-~~~~   62 (611)
                      |.-|+|+||||+||||+|+.|++.++.++.+++...+.. +|.+
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG   93 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence            567899999999999999999999998888887765653 5555

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.51  E-value=0.014  Score=64.31  Aligned_cols=77  Identities=17%  Similarity=0.338  Sum_probs=45.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecCC-CCHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN-LEREQRTDF   96 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~tn-l~~~~R~~~   96 (611)
                      +.-++|.||||+||||+|+.+++..+..+..++.-...   .......++.+.....  .+..++||... ++..+...+
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L  112 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL  112 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence            33577799999999999999999888777666542211   0011122333333233  34567888754 344455555


Q ss_pred             HHh
Q 007244           97 VKL   99 (611)
Q Consensus        97 ~~l   99 (611)
                      +..
T Consensus       113 L~~  115 (413)
T PRK13342        113 LPH  115 (413)
T ss_pred             HHH
Confidence            555

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.50  E-value=0.0061  Score=72.00  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~   68 (611)
                      ..|.-|+|.||||+|||++|+.++...+..+..+....+...+.+..+..+
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i  535 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI  535 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH
Confidence            345668999999999999999999999988877776666655666554433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PLN02748 tRNA dimethylallyltransferase

Probab=96.48  E-value=0.0056  Score=68.41  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=32.2

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      ..+++.+|+|+||+||||||+|..|++.++  ..+|+.|.
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~--~eii~~Ds   55 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP--VEIINADS   55 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcC--eeEEcCch
Confidence            456677999999999999999999999988  45678774

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.47  E-value=0.0055  Score=59.47  Aligned_cols=31  Identities=29%  Similarity=0.525  Sum_probs=24.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      +++++|+||||||+||.+++...+.+...+.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~a   31 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGPVTYIA   31 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence            4789999999999999999887664444453

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG5324 Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.019  Score=63.25  Aligned_cols=144  Identities=21%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCc-EEEecCCCCHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS-VFLDRCNLEREQRTDF   96 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~-VIID~tnl~~~~R~~~   96 (611)
                      ...+|++-+..-||||||.|+-|.+-++  |.+|-.|.+ .|.-++. .+.+.+....+.|.. |++|..|.....|..+
T Consensus       372 ~e~tll~pia~igcgktt~ak~l~~lf~--w~~vqnd~l-sgk~~~k-~~~kai~~~~r~~~~~v~~drnnh~~~~r~~l  447 (758)
T COG5324         372 KEFTLLVPIATIGCGKTTVAKILEKLFG--WPVVQNDNL-SGKGGPK-RFAKAIIEEFRNGHSVVFADRNNHISNMRSTL  447 (758)
T ss_pred             ceeEEEEEEEEeccCcccHHHHHHHHcC--CcccccCCC-CCCCchh-HHHHHHHHHhccCceEEEEcccchhhhhhhhh
Confidence            4457999999999999999999999987  777888888 4443333 334566666677754 6778877666777655


Q ss_pred             HHh-CCCCCeEEEEEEe---CC--HHHHHHHHHhcccccCCCC---C-CCHHHHHHHHHhhccCCCc----cCCccEEEE
Q 007244           97 VKL-GGPEVDVHAVVLD---LP--AKLCISRSVKRIEHEGNLQ---G-GKAAAVVNRMLQKKELPKL----SEGFSRITL  162 (611)
Q Consensus        97 ~~l-~~~~~~v~vV~Ld---~p--~e~~~~Rl~~R~~~~g~~~---~-~vpeevi~rm~~~~e~P~~----~EgFd~V~v  162 (611)
                      ..= -.....+.+|-++   +|  .+....|..+|+.+.....   + +..-.+++-+++++.+-..    ...||.++.
T Consensus       448 q~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~~~d~~~d~~ie  527 (758)
T COG5324         448 QTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGNKHDANYDDIIE  527 (758)
T ss_pred             hcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCCCccccccceee
Confidence            321 1111122333333   22  3678899999987543321   1 1223455666676654333    345777877


Q ss_pred             cCC
Q 007244          163 CQN  165 (611)
Q Consensus       163 v~~  165 (611)
                      ++.
T Consensus       528 ld~  530 (758)
T COG5324         528 LDP  530 (758)
T ss_pred             ccc
Confidence            763

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.45  E-value=0.0093  Score=61.69  Aligned_cols=31  Identities=39%  Similarity=0.552  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      -|+|.|+||+|||++|+.+++.++.++..++
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~   53 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLIN   53 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            4678999999999999999998888887774

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.44  E-value=0.0058  Score=67.23  Aligned_cols=45  Identities=18%  Similarity=0.421  Sum_probs=35.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-cCCCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGKSG   62 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-~~~~~   62 (611)
                      ..|.-|+|+||||+||||+|+.+++.++.+|..++.-.+. .++.+
T Consensus        45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG   90 (441)
T TIGR00390        45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   90 (441)
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence            3457799999999999999999999999888777754443 35555

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.44  E-value=0.0032  Score=67.97  Aligned_cols=29  Identities=24%  Similarity=0.472  Sum_probs=25.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..+..+++|+|||||||||+|+.|++.++
T Consensus        75 ~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       75 EERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            44578999999999999999999998876

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.42  E-value=0.025  Score=62.04  Aligned_cols=41  Identities=27%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..+|.+|+|+|+-||||||.+-+|+..+   +...-.++.|.+|
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R  140 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR  140 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence            5679999999999999999988877543   4445567888875

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.018  Score=62.11  Aligned_cols=101  Identities=22%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCCC---------------c------HHHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG---------------T------KVQCLTS   70 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~~---------------~------~~~~~~~   70 (611)
                      ....+|.+|+++|+.||||||.+-+++-.+.   .....++.|.+|-+.+-               .      ..-..+-
T Consensus        96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg  175 (483)
T KOG0780|consen   96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG  175 (483)
T ss_pred             cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence            3577899999999999999999999886554   34567889998743211               1      1112255


Q ss_pred             HHHHHHCCCcEEEecCCCCHHHH----HHHHHh-CCCCCeEEEEEEeCCH
Q 007244           71 ASSALKKGKSVFLDRCNLEREQR----TDFVKL-GGPEVDVHAVVLDLPA  115 (611)
Q Consensus        71 ~~~~L~~Gk~VIID~tnl~~~~R----~~~~~l-~~~~~~v~vV~Ld~p~  115 (611)
                      +.++-+++..+||=.|.-...+-    .+++++ +.....-+++++|.+.
T Consensus       176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence            56666677665555545444333    334445 4444455677888876

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.41  E-value=0.011  Score=62.11  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhccCCCCcHHH-HHHHHHHHHHCCCcEEEecCC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~~~~~~~~~~-~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      .-++|.|+||+||||+|+.+++.+.       .+++.++.+.+.....+.... ....+..  ..|..++||...
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~--a~~gvL~iDEi~  131 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR--AMGGVLFIDEAY  131 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH--ccCcEEEEechh
Confidence            3589999999999999988776542       145566655554333332221 1122222  135567788743

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PHA02244 ATPase-like protein

Probab=96.41  E-value=0.0093  Score=64.70  Aligned_cols=69  Identities=25%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc--hhc-cC---CCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQD--TIN-KG---KSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D--~i~-~~---~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R   93 (611)
                      |+|.|+||+|||++|+.++..++.++..++..  .+. .+   ..+.+  ....+.++++.|..+++|..+.-....
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~v  196 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKF--HETPFYEAFKKGGLFFIDEIDASIPEA  196 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccc--cchHHHHHhhcCCEEEEeCcCcCCHHH
Confidence            67799999999999999999999888777631  110 01   01111  113455668899999999977554443

>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A

Probab=96.40  E-value=0.0085  Score=62.15  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             eEEEEeecCcch-hhhhhhHHHhhhhhcCCeEEEEEEcccceecc-------cCcccccEEEeCCCCCCcCCCChhhHHH
Q 007244          314 ARLVLVDLTQGS-KILSLVRAKAAQKHINPKKFFTFVGDITRLYT-------GGGLCCNVIANAANWRLKPGGGGVNAAI  385 (611)
Q Consensus       314 i~iV~vd~s~~s-~~Ls~V~s~~~~~~~~~~~v~i~~GDIt~~~~-------~~~~~~daIVN~aN~~L~~~ggGVa~aI  385 (611)
                      .+++++|.+..- +.+...-++..  ..++..+.++.|++..+..       .....+++||.|||+--- +|||...||
T Consensus        14 mkiil~D~N~~v~k~W~~~l~~~~--~~~~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGy-MgGGFDLai   90 (280)
T PF14519_consen   14 MKIILCDTNPIVCKCWKKHLPKAL--ISSSNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGY-MGGGFDLAI   90 (280)
T ss_dssp             -EEEEEES-HHHHHHHHHH-------------EEEEES-HHHHHHHTTSS--------EEEEEEEETT-----SHHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHccHhh--hccCceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhccc-CCCchhHHH
Confidence            688998776521 11110001110  1123448889999887741       123458999999999999 899999999


Q ss_pred             HHhhcH-HHHHHHHHhc--CCCCCCCEEEecCCC---CCCCCCCCCccEEEEecC---CC---CCCCCCCCCCCCchhhH
Q 007244          386 FSAAGP-ALEVATAERA--KSLYPGNSVIVPLPS---TSPLCGREGVTHVIHVLG---PN---MNPRRPNCLDGDYVKGC  453 (611)
Q Consensus       386 ~~aAG~-~l~~e~~~~~--~~~~~G~~v~T~l~~---~~~~~~~l~~k~ViH~vg---P~---~~~~~~~~~~~~~~~~~  453 (611)
                      +++.|. .++..+++..  ...++|.+-+++++-   .+--++.-+++||||+-.   |.   |...      ..+....
T Consensus        91 ~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~------~~~~t~~  164 (280)
T PF14519_consen   91 SEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDRE------VPYETGW  164 (280)
T ss_dssp             HHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-------TTTTTH
T ss_pred             HHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchh------HHHHHHH
Confidence            999764 6666676652  336889988877431   111235578999999832   22   2221      1233455


Q ss_pred             HHHHHHHHHHHHHH----HHhhccccCCC
Q 007244          454 EILRKAYTSLFEGF----LSIVRSQEKLS  478 (611)
Q Consensus       454 ~~L~~ay~~~L~~a----~siafp~~~~~  478 (611)
                      +.+.++.+++|..+    ..|..|-+|-+
T Consensus       165 ~~vfn~~WN~l~~~p~~IdtLiiPGLgTG  193 (280)
T PF14519_consen  165 SLVFNAMWNALRHAPEDIDTLIIPGLGTG  193 (280)
T ss_dssp             HHHHHHHHHHHHTS-TT-SEEEE--SSSS
T ss_pred             HHHHHHHHHhhccCCCCCCeEEECCcccc
Confidence            67778888887643    36677777733

>PRK08116 hypothetical protein; Validated

Probab=96.34  E-value=0.011  Score=61.48  Aligned_cols=104  Identities=11%  Similarity=0.064  Sum_probs=59.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC----CCCcHHHHHHHHHHHHHCCCcEEEecCC---CC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG----KSGTKVQCLTSASSALKKGKSVFLDRCN---LE   89 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~----~~~~~~~~~~~~~~~L~~Gk~VIID~tn---l~   89 (611)
                      +.-++|.|+||+|||++|..++..+   +.....++...+...    .......-...+.+.+.....+|||...   .+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t  193 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT  193 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence            3468999999999999999988764   344445554333211    0000001123344566666778999953   33


Q ss_pred             HHHHHHHHHh--CC-CCCeEEEEEEeCCHHHHHHHHH
Q 007244           90 REQRTDFVKL--GG-PEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        90 ~~~R~~~~~l--~~-~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      .+....+..+  .. .....++|--+.+.+++..+..
T Consensus       194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~  230 (268)
T PRK08116        194 EWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYG  230 (268)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence            4445555555  21 1222346666777777766543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.34  E-value=0.035  Score=54.95  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchhc---cC--------CCCc-HHHHHHHHHHHHHCCCc-EEEec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTIN---KG--------KSGT-KVQCLTSASSALKKGKS-VFLDR   85 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~i~---~~--------~~~~-~~~~~~~~~~~L~~Gk~-VIID~   85 (611)
                      +|+++||+||||||+++.+.......   .+..-.|.+.   ..        +.+. ...+.+.++.+|+.+.. +++|-
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE   82 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE   82 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence            79999999999999999987766421   1111122111   00        0111 11234667777876655 55555


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                       ....+....+++....+..+....=..+......|+..
T Consensus        83 -ird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~  120 (198)
T cd01131          83 -MRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRIID  120 (198)
T ss_pred             -CCCHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhHHHh
Confidence             44555444445552233322222222234455666643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.34  E-value=0.045  Score=53.46  Aligned_cols=108  Identities=15%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEee-cchhcc---C---------CC--CcHHHHHHHHHHHHHCCCc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINK---G---------KS--GTKVQCLTSASSALKKGKS   80 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is-~D~i~~---~---------~~--~~~~~~~~~~~~~L~~Gk~   80 (611)
                      ....+++++|++||||||+.+.+......  ..+.+. ...+..   .         ..  .......+.+...++.+.+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd  102 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD  102 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence            34678999999999999999999876542  122221 111110   0         00  0111234666777887777


Q ss_pred             EEEecCCCCHHHHHHHHHh-C-CCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +|+-+.-...+.. .+++. . -+..-+..+... +.....+|+..+..
T Consensus       103 ~i~igEir~~ea~-~~~~a~~tGh~g~~~T~Ha~-s~~~~~~Rl~~~~~  149 (186)
T cd01130         103 RIIVGEVRGGEAL-DLLQAMNTGHPGGMTTIHAN-SAEEALTRLELLPS  149 (186)
T ss_pred             EEEEEccCcHHHH-HHHHHHhcCCCCceeeecCC-CHHHHHHHHHHHHh
Confidence            7766655555543 34444 2 222133344433 45567788887765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=96.27  E-value=0.0073  Score=61.12  Aligned_cols=110  Identities=20%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC----------e-EEeecc----------hhcc--------C--CCCcH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP----------W-ARICQD----------TINK--------G--KSGTK   64 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~----------~-~~Is~D----------~i~~--------~--~~~~~   64 (611)
                      +.+...++-|.|+||+||||.+..+.+..+..          . .++..|          .+.+        |  |-...
T Consensus       115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~  194 (323)
T KOG2702|consen  115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDS  194 (323)
T ss_pred             cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCH
Confidence            45667899999999999999999988754311          1 122222          2211        1  11112


Q ss_pred             HHHHHHHHHHHH----------------------------CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCH
Q 007244           65 VQCLTSASSALK----------------------------KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA  115 (611)
Q Consensus        65 ~~~~~~~~~~L~----------------------------~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~  115 (611)
                      .-++.. .+.|+                            ..+.||+++ |+-.-+...|.++ +....   -+++++..
T Consensus       195 ~lfl~l-~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EG-nYlLl~~~~Wkdi~k~~d~---k~~idV~~  269 (323)
T KOG2702|consen  195 NLFLQL-CKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEG-NYLLLDQENWKDIYKTLDD---KYKIDVDY  269 (323)
T ss_pred             HHHHHH-HHHHhhcCCCceeccccccccCCCCccceeecccceEEEEec-cEEEecCccHHHHHHHhhh---heeccccH
Confidence            222222 23333                            123367777 4444444556555 44444   46889999


Q ss_pred             HHHHHHHHhcccccC
Q 007244          116 KLCISRSVKRIEHEG  130 (611)
Q Consensus       116 e~~~~Rl~~R~~~~g  130 (611)
                      +...+|..+|.-..|
T Consensus       270 ~~a~~RVa~RHl~sG  284 (323)
T KOG2702|consen  270 EAAEERVAKRHLQSG  284 (323)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999976433

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.27  E-value=0.037  Score=63.17  Aligned_cols=112  Identities=15%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE------ee-----------cchhc-cC--CCCc--HHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR------IC-----------QDTIN-KG--KSGT--KVQCLTSASS   73 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~------Is-----------~D~i~-~~--~~~~--~~~~~~~~~~   73 (611)
                      ....+..++|.||+|+||||+|+.+++.+......      .+           .|.+. +.  ..+.  ..++.+.+..
T Consensus        34 ~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~  113 (546)
T PRK14957         34 TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQY  113 (546)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHh
Confidence            34567789999999999999999999876521000      00           01111 00  0111  0122222222


Q ss_pred             HHH--CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           74 ALK--KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        74 ~L~--~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .-.  ..+.+|||... ++......+++. .+.+..+.+|+.-.....+..-+..|-.
T Consensus       114 ~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~  171 (546)
T PRK14957        114 MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI  171 (546)
T ss_pred             hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhee
Confidence            112  23468888743 445556667777 6665556666666666555555666653

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0077  Score=68.68  Aligned_cols=54  Identities=13%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~   71 (611)
                      .+|.=|+|-|||||||||+|+.++.+.+..|..|....+...|.+..+..+..+
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i  519 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV  519 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence            667889999999999999999999999888888888888877887776544333

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.27  E-value=0.029  Score=61.19  Aligned_cols=40  Identities=18%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~   57 (611)
                      ..+.+++|+||+|+||||++.+|+..+    + .....++.|.++
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R  179 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR  179 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            456799999999999999999998653    3 234567777774

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0062  Score=65.17  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      -.+|+=|+|-||||+|||-+|++++.+.+..|.++..-.
T Consensus       182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE  220 (406)
T COG1222         182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE  220 (406)
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence            456788999999999999999999999998787665433

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.26  E-value=0.0058  Score=68.92  Aligned_cols=39  Identities=26%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..|.-++|.||||+|||++++.++...+.+++.++...+
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~  124 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF  124 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence            445669999999999999999999998877766665443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.26  E-value=0.03  Score=64.73  Aligned_cols=112  Identities=17%  Similarity=0.211  Sum_probs=65.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe----EEe-------e-----------cchhc-cC-CCCcHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW----ARI-------C-----------QDTIN-KG-KSGTKVQCLTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~----~~I-------s-----------~D~i~-~~-~~~~~~~~~~~~   71 (611)
                      ....+..++|+|++|+||||+|+.+++.++..-    ..+       +           .|.+. +. .....+++.+.+
T Consensus        34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLi  113 (700)
T PRK12323         34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLL  113 (700)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHH
Confidence            566788999999999999999999999876310    000       0           01111 00 001112222222


Q ss_pred             HHHH---HCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           72 SSAL---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        72 ~~~L---~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ....   ..|  +.+|||... ++......+++. .+....+.+|++-.....+...++.|-.
T Consensus       114 e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq  176 (700)
T PRK12323        114 DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL  176 (700)
T ss_pred             HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence            2211   122  468999855 445556667777 6666667777777777666666666644

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.25  E-value=0.012  Score=62.77  Aligned_cols=64  Identities=20%  Similarity=0.297  Sum_probs=41.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ..+..++|.||||+||||+|+.+++.++..+..++...+.      ....+..+...+..+..++||...
T Consensus        49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l~~~~vl~IDEi~  112 (328)
T PRK00080         49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNLEEGDVLFIDEIH  112 (328)
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhcccCCEEEEecHh
Confidence            3345688999999999999999999988554444332221      111223333455667788888754

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.24  E-value=0.013  Score=61.51  Aligned_cols=40  Identities=25%  Similarity=0.279  Sum_probs=31.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~   57 (611)
                      ..+.+|+|+||+|+||||++.+|+..+    + .....|+.|.++
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            457899999999999999999987654    3 345677887754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.20  E-value=0.01  Score=70.10  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~   85 (611)
                      ..|.-|+|.||||+||||+++.++..++..++.++...+.....+........+.+.....  ..++||.
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDE  279 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDE  279 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeeh
Confidence            4567799999999999999999999998777777766655544444433333333322222  3467777

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily

Probab=96.18  E-value=0.054  Score=51.82  Aligned_cols=123  Identities=17%  Similarity=0.152  Sum_probs=80.9

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCC-ChhhHHHHHhhcH---HHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-GGVNAAIFSAAGP---ALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (611)
Q Consensus       345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~g-gGVa~aI~~aAG~---~l~~e~~~~~~~~~~G~~v~T~l~~~~~~  420 (611)
                      |+.++||++.-.... .+..+||+..|..-. .| ||+++||.++.-.   .++. |.+. +.+.-|++.+++.......
T Consensus         2 I~yv~GD~~~p~~~~-~~~~iI~H~cN~~G~-WG~gGia~al~~k~p~~~~~Y~~-~~~~-~dl~LG~~~li~v~~~~~~   77 (152)
T cd03331           2 VRYVYGDVTHPSAVC-AEDAIIVHCVDDSGH-WGRGGLFTALEKRSDQPRKAYEL-AGKM-KDLHLGDLHLFPIDDKNSR   77 (152)
T ss_pred             eEEEeCccCCCCccC-CCCeEEEEEECCCCC-CCcchHHHHHHHhCCcHHHHHHH-HHhc-CCCccccEEEEEeccccCC
Confidence            678999999986210 124699999999988 77 7999999998732   3333 4443 5577899999884321111


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccCCC
Q 007244          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS  478 (611)
Q Consensus       421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a----~siafp~~~~~  478 (611)
                        .-+-.+|...++....+..+.     ..-.-..|.+|...+-..+    .||.+|-||.+
T Consensus        78 --~~~~~~va~l~~q~~~~~~~~-----~~~~~~aL~~~L~~~~~~a~~~~~sVhmPrIg~G  132 (152)
T cd03331          78 --LKGPDWVALIVAQHRDKSNPL-----SGIKLSALEKGLKKIYFAAKQKSASVHLPRIGHS  132 (152)
T ss_pred             --CCCCeEEEEEEeEccCCCCCC-----CccCHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence              122368989998887655221     1234466666666655544    47899999854

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven

>PRK04296 thymidine kinase; Provisional

Probab=96.17  E-value=0.043  Score=54.03  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec--chhc------c--CC------CCcHHHHHHHHHHHHHCC-
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--DTIN------K--GK------SGTKVQCLTSASSALKKG-   78 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~--D~i~------~--~~------~~~~~~~~~~~~~~L~~G-   78 (611)
                      |..+++++|+||+||||++..++.++   +.....+..  |.-.      .  +.      .......+..+.+  ..+ 
T Consensus         1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~   78 (190)
T PRK04296          1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEK   78 (190)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCC
Confidence            45789999999999999999987765   223333421  2110      0  10      0011223333333  233 


Q ss_pred             -CcEEEecCCCC-HHHHHHHHHh-CCCCCeEEEEEEe
Q 007244           79 -KSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLD  112 (611)
Q Consensus        79 -k~VIID~tnl~-~~~R~~~~~l-~~~~~~v~vV~Ld  112 (611)
                       ..+|||...+- .++...+++. +..+..+++.-++
T Consensus        79 ~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~  115 (190)
T PRK04296         79 IDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD  115 (190)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence             34899996544 4556667777 7777755555444

>PLN03025 replication factor C subunit; Provisional

Probab=96.17  E-value=0.026  Score=59.96  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...|. ++|.||||+||||+|+.+++.+
T Consensus        32 ~~~~~-lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         32 GNMPN-LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence            34455 5689999999999999999886

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.16  E-value=0.032  Score=55.47  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecch
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDT   55 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~   55 (611)
                      ...+..++|.|+||+||||+|+.+.....   ..+..++.+.
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~   76 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE   76 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence            45567899999999999999999987643   3344455433

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.15  E-value=0.023  Score=57.60  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++|.|+||+|||++++.+..++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998764

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.15  E-value=0.011  Score=66.81  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      ..|.-++|.||||+|||++++.+++.++.
T Consensus       214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence            34567999999999999999999998763

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.15  E-value=0.0038  Score=62.74  Aligned_cols=26  Identities=35%  Similarity=0.465  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      -.+..+++++||||||||||.+.+..
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            35678999999999999999999854

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.14  E-value=0.037  Score=60.43  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~   58 (611)
                      ..+.+|+|+||+|+||||++.+++..+   +.....|+.|.++.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            457899999999999999999988654   33455688887753

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.10  E-value=0.06  Score=61.99  Aligned_cols=112  Identities=13%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-------------Ee------ecchhc-cC-CCCcHHHH---HHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-------------RI------CQDTIN-KG-KSGTKVQC---LTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-------------~I------s~D~i~-~~-~~~~~~~~---~~~~   71 (611)
                      ....+..++|.||+|+||||+|+.+++.+.....             .+      +.|.+. ++ .....+++   .+.+
T Consensus        31 ~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~  110 (584)
T PRK14952         31 AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRA  110 (584)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHH
Confidence            4567889999999999999999999988652100             00      011111 11 01111222   1222


Q ss_pred             HHH--HHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           72 SSA--LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        72 ~~~--L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ...  ....+.+|||... ++......+++. .+....+.+|++....+.+..-++.|..
T Consensus       111 ~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~  170 (584)
T PRK14952        111 FYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH  170 (584)
T ss_pred             HhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence            111  1234679999865 444555566666 6666667777777666766666777754

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.10  E-value=0.035  Score=60.93  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=26.2

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....|.-++|.||||+||||+|+.+++.+.
T Consensus        34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             hCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            345678899999999999999999998875

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.09  E-value=0.013  Score=61.36  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=39.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ..+..++|.||||+|||++|+.+++.++..+..+....+.     ....+ ......+..+..++||...
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~l-~~~l~~~~~~~vl~iDEi~   91 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-----KPGDL-AAILTNLEEGDVLFIDEIH   91 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-----CchhH-HHHHHhcccCCEEEEehHh
Confidence            3445688999999999999999999987554333321111     01111 2223345566677888744

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.011  Score=68.06  Aligned_cols=41  Identities=27%  Similarity=0.551  Sum_probs=35.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      .-+..++.|+||||.|||++++.+++.+++.|++++..-++
T Consensus       347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr  387 (782)
T COG0466         347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR  387 (782)
T ss_pred             cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccc
Confidence            44557999999999999999999999999999999965544

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.08  E-value=0.032  Score=63.24  Aligned_cols=110  Identities=15%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---Ee------e--------cchhc-c-CCCCcHHHHHHHHHHHH-
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---RI------C--------QDTIN-K-GKSGTKVQCLTSASSAL-   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---~I------s--------~D~i~-~-~~~~~~~~~~~~~~~~L-   75 (611)
                      ....+..++|.||||+||||+|+.+++.++....   .-      +        .|.+. + ......+++.+ +.+.+ 
T Consensus        34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~-l~~~~~  112 (509)
T PRK14958         34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRE-LLDNIP  112 (509)
T ss_pred             hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHH-HHHHHh
Confidence            4567889999999999999999999998763100   00      0        01111 0 00011111111 21211 


Q ss_pred             ---HCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           76 ---KKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        76 ---~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                         ..|  +.+|||... ++......+++. .+.+..+.+|+.......+..-+..|-
T Consensus       113 ~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc  170 (509)
T PRK14958        113 YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC  170 (509)
T ss_pred             hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence               122  468999865 345555667777 666555667776665555554455554

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=96.06  E-value=0.0027  Score=59.17  Aligned_cols=41  Identities=10%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             hhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 007244          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (611)
Q Consensus       265 ~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~  305 (611)
                      ..+.+.+.++++.|||||.|++|++|||.+++++||.+...
T Consensus        98 ~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~  138 (140)
T cd02901          98 RELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA  138 (140)
T ss_pred             HHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence            34445577789999999999999999999999999988754

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.05  E-value=0.033  Score=62.66  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      +..++|.||||+||||+|+.+++.++..+..++.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielna   72 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNA   72 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence            6789999999999999999999999866655554

>PRK08727 hypothetical protein; Validated

Probab=96.05  E-value=0.06  Score=54.70  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..++|.|++|+|||+++..+...
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~   64 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA   64 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998654

>PRK05642 DNA replication initiation factor; Validated

Probab=96.05  E-value=0.031  Score=56.87  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      ..++|+|++|+|||++++.+...+   +.....++.+.+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~   84 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL   84 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence            568999999999999999987542   333444555444

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=96.05  E-value=0.072  Score=54.35  Aligned_cols=111  Identities=15%  Similarity=0.228  Sum_probs=72.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcH-HHHHHHHHHHH-HCCCcEEEecCCCCHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTK-VQCLTSASSAL-KKGKSVFLDRCNLEREQRT   94 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L-~~Gk~VIID~tnl~~~~R~   94 (611)
                      .+.|.||||-|..||||...+++|...++...+.+..  +......+. .-.+-..-+.| ..|...|+|...+...-+.
T Consensus        28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~--~~~pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~  105 (230)
T TIGR03707        28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA--LPKPSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVE  105 (230)
T ss_pred             cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe--CCCCCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhHHHH
Confidence            3469999999999999999999999998866554432  100000000 00112222222 4567777777555542211


Q ss_pred             -------------------HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           95 -------------------DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        95 -------------------~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                                         .|-+. ...|+.++-+||.++.++..+|+.+|...+
T Consensus       106 rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p  160 (230)
T TIGR03707       106 RVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDP  160 (230)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence                               12233 678888999999999999999999998754

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.04  E-value=0.036  Score=60.55  Aligned_cols=81  Identities=22%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCC---c-------------HHHHHHHHHHHHHC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSG---T-------------KVQCLTSASSALKK   77 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~---~-------------~~~~~~~~~~~L~~   77 (611)
                      ++.+|+|+||.|.||||-.-+|+..+.     .....|+.|.+|-|...   .             ..+-+..+...|+.
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            478999999999999998888887654     23567899999754211   1             11223555667777


Q ss_pred             CCcEEEecCCCCHHHHHHHHHh
Q 007244           78 GKSVFLDRCNLEREQRTDFVKL   99 (611)
Q Consensus        78 Gk~VIID~tnl~~~~R~~~~~l   99 (611)
                      -..|.||....+..+.....++
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el  303 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEEL  303 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHH
Confidence            7889999977766555444433

>CHL00176 ftsH cell division protein; Validated

Probab=96.03  E-value=0.011  Score=68.66  Aligned_cols=39  Identities=23%  Similarity=0.424  Sum_probs=31.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..|.-++|.||||+|||++|+.++.+.+.+++.++...+
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f  252 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEF  252 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHH
Confidence            345669999999999999999999998877766665443

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.02  E-value=0.0049  Score=62.53  Aligned_cols=36  Identities=39%  Similarity=0.717  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHH---HHHcCCCeEEeecchhc
Q 007244           22 LVIMVGAPGSGKSTFCEHV---MRSSARPWARICQDTIN   57 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L---~~~~~~~~~~Is~D~i~   57 (611)
                      --+++|||||||||++.-+   +...++++..|+.|=-.
T Consensus         4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN   42 (290)
T KOG1533|consen    4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN   42 (290)
T ss_pred             ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence            3578999999999998764   45677788888876543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.02  E-value=0.033  Score=61.12  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~   57 (611)
                      ..|.+|+|+|++|+||||++.+|+..+.   .....++.|.++
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            4568999999999999999999976543   234567777765

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.01  E-value=0.041  Score=65.60  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      .+..+..++|+|+||+||||+|+.+++.++.
T Consensus        34 ~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc   64 (944)
T PRK14949         34 QQRLHHAYLFTGTRGVGKTSLARLFAKGLNC   64 (944)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence            4567889999999999999999999998763

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.00  E-value=0.06  Score=55.70  Aligned_cols=41  Identities=20%  Similarity=0.464  Sum_probs=34.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..+.|.-|++-||||.|||-+|+.|+.+...++.++..-.+
T Consensus       147 g~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l  187 (368)
T COG1223         147 GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL  187 (368)
T ss_pred             cccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH
Confidence            46789999999999999999999999998877766654333

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.00  E-value=0.018  Score=63.02  Aligned_cols=40  Identities=25%  Similarity=0.280  Sum_probs=31.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~   57 (611)
                      ..|.+|+|+||+|+||||.+.+++..+.       .....++.|.++
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R  218 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR  218 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence            4578999999999999999999987542       345567778764

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.00  E-value=0.017  Score=60.83  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +|+++||+|||||+++..|++.++..  +|+.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~--iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAE--IISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCc--EEEechh
Confidence            58999999999999999999998744  4666554

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.98  E-value=0.0059  Score=62.47  Aligned_cols=30  Identities=33%  Similarity=0.550  Sum_probs=21.3

Q ss_pred             EEcCCCCcHHHHHHHHHHHcC---CCeEEeecc
Q 007244           25 MVGAPGSGKSTFCEHVMRSSA---RPWARICQD   54 (611)
Q Consensus        25 LvG~PGSGKST~A~~L~~~~~---~~~~~Is~D   54 (611)
                      ++||+||||||+++.+.+-+.   +....|+.|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            589999999999999877544   455667643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.97  E-value=0.0072  Score=59.04  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=55.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc----cCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN----KGKSGTKVQCLTSASSALKKGKSVFLDRCNLER   90 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~----~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~   90 (611)
                      ..+.-++|.|+||+|||++|..++.+.   +.....++...+.    ......   -.......+..-...|||......
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~---~~~~~~~~l~~~dlLilDDlG~~~  121 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDG---SYEELLKRLKRVDLLILDDLGYEP  121 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCT---THCHHHHHHHTSSCEEEETCTSS-
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccccccc---chhhhcCccccccEecccccceee
Confidence            345669999999999999999987642   3334445544332    111110   112334566777889999965543


Q ss_pred             ---HHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           91 ---EQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        91 ---~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                         .....+.++  ..++-...+|--..+.+.+.+.+..|
T Consensus       122 ~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~  161 (178)
T PF01695_consen  122 LSEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR  161 (178)
T ss_dssp             --HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-----
T ss_pred             ecccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc
Confidence               333434444  22222345666677888777777644

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.96  E-value=0.055  Score=62.74  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|+||+|+||||+|+.+++.++
T Consensus        33 ~grl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         33 RGRLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445578999999999999999999999876

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.95  E-value=0.045  Score=65.42  Aligned_cols=112  Identities=14%  Similarity=0.157  Sum_probs=65.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE------Eee-------------cchhc-cC-CCCcHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA------RIC-------------QDTIN-KG-KSGTKVQCLTSASSA   74 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~------~Is-------------~D~i~-~~-~~~~~~~~~~~~~~~   74 (611)
                      ....+..++|.|++|+||||+|+.+++.+.....      -.|             .|.+. ++ .....+++.+...+.
T Consensus        33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~  112 (824)
T PRK07764         33 SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERA  112 (824)
T ss_pred             hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHH
Confidence            4566788999999999999999999998752100      000             11110 11 111122222221111


Q ss_pred             ----H-HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           75 ----L-KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        75 ----L-~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                          + ...+.+|||... ++......++++ .+....+++|++....+.++.-++.|..
T Consensus       113 ~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~  172 (824)
T PRK07764        113 FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH  172 (824)
T ss_pred             HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence                1 223568898744 555556677777 7766667777777666667666777754

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.94  E-value=0.0096  Score=65.48  Aligned_cols=41  Identities=17%  Similarity=0.164  Sum_probs=30.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~   57 (611)
                      ...|.+|.|+|++||||||+++.|...+.   .....|+.|.+.
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            44789999999999999999999976543   224556666653

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=95.94  E-value=0.11  Score=55.87  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-c--hhc--c--CC---------CC-cHHHHHHHHHHHHHCCCcE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-D--TIN--K--GK---------SG-TKVQCLTSASSALKKGKSV   81 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D--~i~--~--~~---------~~-~~~~~~~~~~~~L~~Gk~V   81 (611)
                      ....|+++|++||||||+.+.|....+....++.- |  .+.  .  +.         .+ ......+.+..+|+..-++
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~  238 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR  238 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence            35679999999999999999999877643322321 1  111  0  00         00 0112346778888888776


Q ss_pred             EEecCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           82 FLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      |+=+--...+.. .+++.  ..+...+..+.-. +......|+...
T Consensus       239 IivGEiR~~ea~-~~l~a~~tGh~G~~tTiHa~-s~~~ai~Rl~~~  282 (332)
T PRK13900        239 IIVGELRGAEAF-SFLRAINTGHPGSISTLHAD-SPAMAIEQLKLM  282 (332)
T ss_pred             EEEEecCCHHHH-HHHHHHHcCCCcEEEEEecC-CHHHHHHHHHHH
Confidence            665645555433 34443  3332234555544 344566887654

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.93  E-value=0.06  Score=61.01  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE----------Eee-----------cchhc-cC-CCCcHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA----------RIC-----------QDTIN-KG-KSGTKVQCLTSAS   72 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~----------~Is-----------~D~i~-~~-~~~~~~~~~~~~~   72 (611)
                      .+..+..++|+||||+||||+|+.+++.++....          ..+           .|.+. +. .....+++...+.
T Consensus        39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie  118 (507)
T PRK06645         39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIE  118 (507)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHH
Confidence            4455778999999999999999999998763210          000           01111 00 0011122222222


Q ss_pred             HHH-----HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           73 SAL-----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        73 ~~L-----~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+-     ...+.+|||... ++......+++. .+.+..+.+|+.....+.+..-+..|..
T Consensus       119 ~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~  180 (507)
T PRK06645        119 SAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ  180 (507)
T ss_pred             HHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcce
Confidence            111     233568999854 344455556666 5555555666665555555555666643

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.92  E-value=0.0076  Score=56.38  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=25.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +...+|+|.|++|+|||||++.+++.++
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4456899999999999999999999887

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK09183 transposase/IS protein; Provisional

Probab=95.91  E-value=0.034  Score=57.56  Aligned_cols=121  Identities=12%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHH--HHHHHHHHHHHCCCcEEEecCCC---CH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCNL---ER   90 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~--~~~~~~~~~L~~Gk~VIID~tnl---~~   90 (611)
                      ....++|+||||+||||++..+....   +.....++...+.........  .........+..-..+|||...+   ..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~  180 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ  180 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCCh
Confidence            34568899999999999999986542   322333342222110000000  01112222233445689998553   33


Q ss_pred             HHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244           91 EQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        91 ~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      .....+..+  ..+.-..++|--..+.+.+.+......        ...+.++.|+...
T Consensus       181 ~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~--------~~~~ai~dRl~~~  231 (259)
T PRK09183        181 EEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDA--------ALTSAMLDRLLHH  231 (259)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCch--------hHHHHHHHHHhcc
Confidence            444445555  222222345566778777777652111        2445667776643

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.90  E-value=0.039  Score=62.48  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=26.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|+||||+||||+|+.+++.+.
T Consensus        32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999999998764

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.89  E-value=0.057  Score=60.88  Aligned_cols=111  Identities=16%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---E--------------eecchhc-cCC-CCcHHHHHHHHHHHH-
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---R--------------ICQDTIN-KGK-SGTKVQCLTSASSAL-   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---~--------------Is~D~i~-~~~-~~~~~~~~~~~~~~L-   75 (611)
                      .+.-|.-++|+||+|+||||+|+.+++.++....   .              ...|.+. +.. ....+++.. +.+.+ 
T Consensus        31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~-Iie~~~  109 (491)
T PRK14964         31 LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKV-ILENSC  109 (491)
T ss_pred             cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHH-HHHHHH
Confidence            4556778999999999999999999986531100   0              0011111 000 011122211 21111 


Q ss_pred             -----HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 -----~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                           ...+.+|||... ++......+++. .+.+..+.+|+.....+.+...+..|..
T Consensus       110 ~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~  168 (491)
T PRK14964        110 YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQ  168 (491)
T ss_pred             hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhe
Confidence                 234568999854 444555666666 6665566677766666777777777765

>PLN02796 D-glycerate 3-kinase

Probab=95.89  E-value=0.01  Score=63.89  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..|.+|.|+|++||||||+++.|...+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            5789999999999999999999987654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=95.89  E-value=0.043  Score=64.44  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------Eeec--------chhc-cC-CCCcHHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------RICQ--------DTIN-KG-KSGTKVQCLTSASSALK   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------~Is~--------D~i~-~~-~~~~~~~~~~~~~~~L~   76 (611)
                      ....+..++|+|++|+||||+++.+++.++....         ..+.        |.+. +. .....+++.+.+.....
T Consensus        34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~  113 (830)
T PRK07003         34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVY  113 (830)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHh
Confidence            4456888999999999999999999998762110         0000        1111 00 00111122222222111


Q ss_pred             -----CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           77 -----KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        77 -----~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                           ..+.+|||... ++......+++. .+....+.+|+.-.....+..-+..|-
T Consensus       114 ~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC  170 (830)
T PRK07003        114 APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC  170 (830)
T ss_pred             ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence                 23568899855 444445566666 665555667776666655555555554

>PRK06921 hypothetical protein; Provisional

Probab=95.88  E-value=0.029  Score=58.37  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=53.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL------   88 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl------   88 (611)
                      ...-++|.|+||+|||+++..++..+.    .....++...+........ .-.....+.+..-..+|||....      
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~~~dlLiIDDl~~~~~g~e  194 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMKKVEVLFIDDLFKPVNGKP  194 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhcCCCEEEEeccccccCCCc
Confidence            345689999999999999999887643    2223333322211000000 11122334556667789999622      


Q ss_pred             --CHHHHHHHHHh--CCC-CCeEEEEEEeCCHHHHHH
Q 007244           89 --EREQRTDFVKL--GGP-EVDVHAVVLDLPAKLCIS  120 (611)
Q Consensus        89 --~~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~  120 (611)
                        +......+..+  ... .....+|--..+.+.+..
T Consensus       195 ~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~  231 (266)
T PRK06921        195 RATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLD  231 (266)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhh
Confidence              23344445444  221 112345556677776654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.046  Score=63.09  Aligned_cols=65  Identities=15%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFL   83 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VII   83 (611)
                      .++-|+|-||||+|||.+|.+++...+..++.+-...+-+...+..++....+..+.+.-+.+|+
T Consensus       700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiL  764 (952)
T KOG0735|consen  700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCIL  764 (952)
T ss_pred             cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEE
Confidence            35679999999999999999999998866655656666566667666666666555665565544

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.86  E-value=0.09  Score=57.70  Aligned_cols=36  Identities=11%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i   56 (611)
                      ..++|.|+||+|||++++.+...+     +..+..++.+.+
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~  177 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF  177 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence            458899999999999999987654     233445655443

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=95.85  E-value=0.017  Score=59.99  Aligned_cols=38  Identities=29%  Similarity=0.542  Sum_probs=29.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQD   54 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D   54 (611)
                      ....|..|+++|+.|||||||.++|...+.    .+| +|+.|
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppY-viNLD   56 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPY-VINLD   56 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCe-EEeCC
Confidence            456789999999999999999999876543    244 56654

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.85  E-value=0.057  Score=56.98  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++|.||||+||||+|+.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999988764

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.82  E-value=0.047  Score=61.24  Aligned_cols=111  Identities=27%  Similarity=0.357  Sum_probs=63.5

Q ss_pred             CCcCcccCCCccCCCCcCccCCcccCCC-ccccCCCccchhc----cccccCCcccccccccccccccccccccCccccc
Q 007244          481 CNEDIRLEPSVSQDHSEDVHGNYISTGD-KIKRDGGHEYEQS----KKCKTQNEVGTDINLSRAANLSADNEKIGVSTSK  555 (611)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (611)
                      .-|.++.+.+.+.+.-|++..+-+++-+ ..+-+.+++.||-    ||-++.-.+..    ..    -+|.++.++    
T Consensus       603 n~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~----ee----r~d~e~~d~----  670 (1077)
T COG5192         603 NFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFEL----EE----RGDPEKKDV----  670 (1077)
T ss_pred             CcccccccccccccchhhccCCcccccchhhccccchHHHhhhhhhhhhhhhcceee----hh----ccCcccccc----
Confidence            3445555556666777777788888888 8888999998886    56554222211    11    122222222    


Q ss_pred             chhHHHH-----HH--HHH---hcCCCCC------c----------ccceeeecc-----EEEecccccccccchhhhh
Q 007244          556 AWGSWAQ-----AL--YRT---AMYPERH------K----------DDLLEISDD-----VVVLNDLYPKMYEMNICKF  603 (611)
Q Consensus       556 ~~~~~~~-----~~--~~~---~~~~~~~------~----------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  603 (611)
                      .|-.-..     -|  -.+   -|-||..      +          +.=||.-|.     .||+--|.|--++++|.+-
T Consensus       671 dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~  749 (1077)
T COG5192         671 DWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQG  749 (1077)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhh
Confidence            2432211     11  122   3889831      1          233443333     6899999999999998753

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.80  E-value=0.063  Score=50.34  Aligned_cols=86  Identities=17%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecc-hhc-cCCCC-cHHHHHHHHHHHHHCCCcEEEec--CCCCH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQD-TIN-KGKSG-TKVQCLTSASSALKKGKSVFLDR--CNLER   90 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is~D-~i~-~~~~~-~~~~~~~~~~~~L~~Gk~VIID~--tnl~~   90 (611)
                      .+..++.++|++|||||||.+.+.......  -+.++.. .+. -.... -..+....++..+.....+|+|.  .++..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~  103 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL  103 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence            456789999999999999999987754311  1112110 000 00011 11233355566666667789998  44666


Q ss_pred             HHHHHHHHh-CCCC
Q 007244           91 EQRTDFVKL-GGPE  103 (611)
Q Consensus        91 ~~R~~~~~l-~~~~  103 (611)
                      ..+..+.++ +...
T Consensus       104 ~~~~~l~~~l~~~~  117 (144)
T cd03221         104 ESIEALEEALKEYP  117 (144)
T ss_pred             HHHHHHHHHHHHcC
Confidence            778877777 5443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.78  E-value=0.0098  Score=63.53  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      -|+|.|+||+||||+++.+++.++.++.+|+
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~   96 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVN   96 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence            4899999999999999999999998887775

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.75  E-value=0.064  Score=63.26  Aligned_cols=39  Identities=21%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~   57 (611)
                      .+.+|+|+||+|+||||.+.+|+..+    + .....++.|.++
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            46899999999999999999988644    2 234567777765

>cd04163 Era Era subfamily

Probab=95.74  E-value=0.046  Score=50.10  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...|+|+|++||||||+++.+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.71  E-value=0.097  Score=55.79  Aligned_cols=30  Identities=13%  Similarity=0.247  Sum_probs=25.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|.||||+||||+|+.+++.+.
T Consensus        32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        32 NGRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345577899999999999999999998864

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.70  E-value=0.032  Score=57.41  Aligned_cols=102  Identities=10%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC---CCCcHHHHHHHHHHHHHCCCcEEEecCCCCH---H
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG---KSGTKVQCLTSASSALKKGKSVFLDRCNLER---E   91 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~---~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~---~   91 (611)
                      ..++|.|+||+|||+++..++..+   +.....++..++...   .+.....-...+.+.+..-..+|||......   .
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~  179 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY  179 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHH
Confidence            478999999999999999998776   333444444333210   0000001112344556666678999854332   3


Q ss_pred             HHHHHHHh--CCCC-CeEEEEEEeCCHHHHHHHH
Q 007244           92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        92 ~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ...-+..+  ..+. ...++|--..+.+.+.+++
T Consensus       180 ~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~  213 (244)
T PRK07952        180 EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL  213 (244)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHh
Confidence            33344444  2222 3345666677888776555

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.69  E-value=0.064  Score=53.25  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=24.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++...++++||||+|||||.+.+.....
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            5667899999999999999999887643

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.69  E-value=0.065  Score=56.04  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++|.|+||+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         41 LLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6999999999999999998875

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.69  E-value=0.054  Score=62.99  Aligned_cols=110  Identities=16%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------Eee--------cchhc-cCC-CCcHHHHH---HHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------RIC--------QDTIN-KGK-SGTKVQCL---TSASS   73 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------~Is--------~D~i~-~~~-~~~~~~~~---~~~~~   73 (611)
                      .+..+..++|.|++|+||||+|+.+++.++....         ..+        .|.+. +.. ....+++.   +.+..
T Consensus        34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~  113 (647)
T PRK07994         34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQY  113 (647)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHh
Confidence            4566788999999999999999999998763110         000        01110 111 01112222   22211


Q ss_pred             HHHCC--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           74 ALKKG--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        74 ~L~~G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      .-..|  +.+|||... ++...-..+++. .+.+..+.+|+.....+.+..-++.|
T Consensus       114 ~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR  169 (647)
T PRK07994        114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR  169 (647)
T ss_pred             hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence            11223  468999855 555566677777 77666666777655554444444444

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.68  E-value=0.11  Score=52.46  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~   53 (611)
                      .+..+++|.|+||+|||+|+..++...    +.+...++.
T Consensus        11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984          11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            456799999999999999999876532    445555653

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.65  E-value=0.1  Score=52.64  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -++|.|++|+|||++.+.+..+
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~   57 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANE   57 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999998654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF05729 NACHT: NACHT domain

Probab=95.65  E-value=0.0088  Score=55.72  Aligned_cols=25  Identities=36%  Similarity=0.574  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+++|.|.||+||||+++.++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            3789999999999999999886543

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=95.64  E-value=0.093  Score=51.08  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=25.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..+..++|.|++|+||||+|+.+++.+.
T Consensus        10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        10 KGRLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            445678899999999999999999988754

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=95.64  E-value=0.09  Score=52.21  Aligned_cols=38  Identities=16%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             EEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244          107 HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus       107 ~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      -+|||.++.++|.+|+.+|.+.+   +..+|-+-+..+...
T Consensus       156 giIYLrasPetc~~Ri~~R~R~E---E~gipL~YLe~LH~~  193 (244)
T KOG4235|consen  156 GIIYLRASPETCYKRIYLRAREE---EKGIPLKYLEALHEL  193 (244)
T ss_pred             eEEEeecChHHHHHHHHHHhhhh---hcCCcHHHHHHHHHH
Confidence            58999999999999999998753   225676666665544

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.032  Score=58.87  Aligned_cols=60  Identities=12%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~   76 (611)
                      -..|..+.|.||||.|||-+|+.++...+..+..++.-.+..+..++..+++...-+..+
T Consensus       163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~  222 (388)
T KOG0651|consen  163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR  222 (388)
T ss_pred             CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh
Confidence            356889999999999999999999999997776677777777777776655544333333

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=95.62  E-value=0.12  Score=57.92  Aligned_cols=143  Identities=13%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEeecchh----ccCCCC---cHHH-H-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTI----NKGKSG---TKVQ-C-   67 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~---------------------~~~~Is~D~i----~~~~~~---~~~~-~-   67 (611)
                      -++..+||+|+.|.|---+-++|....+.                     .|..++...+    +.+.+.   +.+. + 
T Consensus       338 ~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlY  417 (542)
T KOG0609|consen  338 FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLY  417 (542)
T ss_pred             cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccc
Confidence            55689999999999999999998876432                     1222332222    223322   2221 2 


Q ss_pred             ---HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           68 ---LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        68 ---~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                         ++.++..+..|+.+|+|.      ..+.+-.++...+...+||+.+|.-.++++.++-....+.-.....++-+.+|
T Consensus       418 GTs~dsVr~v~~~gKicvLdv------~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i  491 (542)
T KOG0609|consen  418 GTSLDSVRNVIASGKICVLDV------EPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEI  491 (542)
T ss_pred             cchHHHHHHHHHhCCEEEEec------CHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHH
Confidence               278889999999999999      23332222445555568888877766555543322211111112445555555


Q ss_pred             Hhh--ccCCCccCCccEEEEcCCh
Q 007244          145 LQK--KELPKLSEGFSRITLCQNE  166 (611)
Q Consensus       145 ~~~--~e~P~~~EgFd~V~vv~~~  166 (611)
                      .+.  ..+-.+.--||-++++++-
T Consensus       492 ~~eS~~ie~~yghyfD~iIvN~dl  515 (542)
T KOG0609|consen  492 IDESARIEQQYGHYFDLIIVNSDL  515 (542)
T ss_pred             HHHHHHHHHHhhhheeEEEEcCcH
Confidence            543  2334445668888888753

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.62  E-value=0.0091  Score=56.75  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      |+|+|.||+||||+++.|++. +
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g   23 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-G   23 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T
T ss_pred             EEEECCCCCCHHHHHHHHHHc-C
Confidence            789999999999999999988 6

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.60  E-value=0.13  Score=57.41  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      -++|.|+||+|||++++.+...+   +.....++.+.+
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f  180 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF  180 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence            47889999999999999988754   333444554433

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.60  E-value=0.12  Score=57.75  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .-++|.|+||+|||++++.+....
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~  172 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYI  172 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            348999999999999999998765

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.59  E-value=0.11  Score=52.20  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=25.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      ....++|.|+||+|||++++.+....   +..+..++.
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~   78 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA   78 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence            34568999999999999999998764   233444543

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.57  E-value=0.014  Score=59.13  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~   41 (611)
                      +..|.++++.|+||+||||+|+.+.
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcC
Confidence            4457889999999999999999885

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK08181 transposase; Validated

Probab=95.56  E-value=0.031  Score=58.28  Aligned_cols=103  Identities=16%  Similarity=0.103  Sum_probs=56.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcH-HHHHHHHHHHHHCCCcEEEecCC---CCHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCN---LEREQ   92 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L~~Gk~VIID~tn---l~~~~   92 (611)
                      ..-++|+|+||+|||+++..+....   +.....++...+........ ..-.....+.+..-..+|||...   .....
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~  185 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE  185 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHH
Confidence            3459999999999999999987643   32333344333321100000 00112334455666778999854   33444


Q ss_pred             HHHHHHh--CCCCCeEEEEEEeCCHHHHHHHH
Q 007244           93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        93 R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ...+..+  ..+.-...+|--..+...+..++
T Consensus       186 ~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~  217 (269)
T PRK08181        186 TSVLFELISARYERRSILITANQPFGEWNRVF  217 (269)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhc
Confidence            4555555  22222344556677777766655

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.55  E-value=0.023  Score=53.76  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhc-cCCCCcHHHHHHHHHHHHHCCCc--EEEecCCCCHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTIN-KGKSGTKVQCLTSASSALKKGKS--VFLDRCNLEREQRT   94 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~-~~~~~~~~~~~~~~~~~L~~Gk~--VIID~tnl~~~~R~   94 (611)
                      -|+|+|++|||||||++.|......    +.+....+.|. .|++.+...++..+......-..  .+.|++.......-
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP   82 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP   82 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc
Confidence            3899999999999999999764321    11111112221 34555544444444333333332  45666544333444


Q ss_pred             HHHHh
Q 007244           95 DFVKL   99 (611)
Q Consensus        95 ~~~~l   99 (611)
                      .+...
T Consensus        83 ~fa~~   87 (143)
T PF10662_consen   83 GFASM   87 (143)
T ss_pred             hhhcc
Confidence            44443

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=95.54  E-value=0.022  Score=61.69  Aligned_cols=45  Identities=18%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTK   64 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~   64 (611)
                      ...|+|.||||+|||.+|-.++++++  .||..++.-.++..+..-.
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKT   96 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKT   96 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HH
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCch
Confidence            57899999999999999999999998  5788888877765554433

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=95.53  E-value=0.029  Score=57.06  Aligned_cols=63  Identities=22%  Similarity=0.351  Sum_probs=39.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCCcHHHHHH-------HHHHHHHCCCcEEEecC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLT-------SASSALKKGKSVFLDRC   86 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~~~~~~~~-------~~~~~L~~Gk~VIID~t   86 (611)
                      -++..++++.|+||||||+||.+++..   .+.....++.+.-       ..++.+       .+......|...++|..
T Consensus        18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~-------~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~   90 (237)
T TIGR03877        18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH-------PVQVRRNMAQFGWDVRKYEEEGKFAIVDAF   90 (237)
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC-------HHHHHHHHHHhCCCHHHHhhcCCEEEEecc
Confidence            356789999999999999999986543   2444445554321       111111       12345566777888873

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.52  E-value=0.01  Score=56.62  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+.+++|.|++|+||||+.+++...+.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456678999999999999999999876544

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.51  E-value=0.022  Score=55.32  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhcc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK   58 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~   58 (611)
                      ..++|+||+|+|||.+|+.+++.+..    ++.+++.-.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            57899999999999999999998873    566666555543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PF13245 AAA_19: Part of AAA domain

Probab=95.51  E-value=0.012  Score=49.49  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=17.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ...++++.|+|||||||++..+..
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~   32 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIA   32 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHH
Confidence            345788899999999965555444

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.51  E-value=0.03  Score=56.19  Aligned_cols=25  Identities=36%  Similarity=0.749  Sum_probs=21.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      +...++++.|+||+|||||+.+++.
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~   42 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAY   42 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHH
Confidence            4578999999999999999998654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.48  E-value=0.014  Score=56.97  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=24.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++.++.++|++||||||+++++...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3556899999999999999999987764

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=95.47  E-value=0.025  Score=60.66  Aligned_cols=57  Identities=19%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSAL   75 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L   75 (611)
                      ...-|+|+||||+|||.+|-.+++++|  .||+.++.-.++..+....+.+.+.+++++
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraI  122 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAI  122 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhh
Confidence            357899999999999999999999998  478888877776655554444445555444

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=95.45  E-value=0.12  Score=53.72  Aligned_cols=110  Identities=15%  Similarity=0.217  Sum_probs=71.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-ccCCCCcHHHHHHHHHHHH-HCCCcEEEecCCCCHHH---
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLEREQ---   92 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~~~~~~~~~~~~~~~~~L-~~Gk~VIID~tnl~~~~---   92 (611)
                      ..|.||||-|.-||||...+++|.+.++...+.+-.-.- ...+. .. ..+-..-+.| ..|...|+|+..+...-   
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~-~~-p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~r  131 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL-DH-DFLWRIHKALPERGEIGIFNRSHYEDVLVVR  131 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cC-chHHHHHHhCCCCCeEEEEcCccccchhhhh
Confidence            469999999999999999999999998866544432000 00000 00 0111122222 46777788876555421   


Q ss_pred             ----------HHH------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           93 ----------RTD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        93 ----------R~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                                ...      |-+. ...|+.++-+||.++.++..+|+.+|...+
T Consensus       132 v~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p  185 (264)
T TIGR03709       132 VHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDP  185 (264)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCC
Confidence                      111      2223 567888999999999999999999997654

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.44  E-value=0.013  Score=64.73  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .-|+|.||||+|||++|+.+++.++.+|+.++...+
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l  144 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL  144 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            458999999999999999999999888877765444

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.019  Score=61.68  Aligned_cols=53  Identities=11%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL   68 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~   68 (611)
                      .-.+|.-|+|.||||+|||-+|++++++.+..+.-|+.-.+-..|+++.....
T Consensus       123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv  175 (386)
T KOG0737|consen  123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLV  175 (386)
T ss_pred             cccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHH
Confidence            34578889999999999999999999999987866666666667776655443

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=95.43  E-value=0.11  Score=59.98  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=60.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEE--ee--------------cchhc-cC-CCCcHHHHH---HHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WAR--IC--------------QDTIN-KG-KSGTKVQCL---TSASS   73 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~--Is--------------~D~i~-~~-~~~~~~~~~---~~~~~   73 (611)
                      ....+.-+++.||+|+||||+|+.+++.+... +..  .+              .|.+. ++ .....+++.   ..+..
T Consensus        34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~  113 (605)
T PRK05896         34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINY  113 (605)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHh
Confidence            34557789999999999999999999886521 100  00              01111 11 001111121   11111


Q ss_pred             --HHHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           74 --ALKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        74 --~L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                        .....+.+|||... ++......+++. .+.+..+.+|++....+.+...+..|..
T Consensus       114 ~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq  171 (605)
T PRK05896        114 LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQ  171 (605)
T ss_pred             chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhh
Confidence              11123568888743 444555667776 6555556666666666656555666654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.42  E-value=0.042  Score=53.74  Aligned_cols=82  Identities=18%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhc---cCCCCcH--HHHHHHHHHHHHCCCcEEEec--CCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN---KGKSGTK--VQCLTSASSALKKGKSVFLDR--CNL   88 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~---~~~~~~~--~~~~~~~~~~L~~Gk~VIID~--tnl   88 (611)
                      ++..++.|+|++||||||+.+.++.....  ..+.++...+.   +......  .+....++..+.....+++|.  .++
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L  102 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL  102 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence            45678999999999999999998764331  12223211111   1110111  233455566666777789988  346


Q ss_pred             CHHHHHHHHHh
Q 007244           89 EREQRTDFVKL   99 (611)
Q Consensus        89 ~~~~R~~~~~l   99 (611)
                      ....+..+.++
T Consensus       103 D~~~~~~l~~~  113 (177)
T cd03222         103 DIEQRLNAARA  113 (177)
T ss_pred             CHHHHHHHHHH
Confidence            66666666555

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.40  E-value=0.022  Score=51.38  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~   41 (611)
                      ...+++|+|++||||||+++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            35789999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=95.37  E-value=0.13  Score=58.11  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=72.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-ccCCCCcHHHHHHHHHHHH-HCCCcEEEecCCCCHHH--
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLEREQ--   92 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~~~~~~~~~~~~~~~~~L-~~Gk~VIID~tnl~~~~--   92 (611)
                      .+.|.||+|-|.-||||++..+++.+.++...+.+..-.. ...+.. . ..+-..-+.| ..|..+|+|...+...-  
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~-~-~flwRfw~~lP~~G~I~IFdRSWY~~vlve  114 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE-R-PPMWRFWRRLPPKGKIGIFFGSWYTRPLIE  114 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc-C-cHHHHHHHhCCCCCeEEEEcCcccchhhHH
Confidence            4679999999999999999999999988855433321000 000000 0 0111222222 45777788876655422  


Q ss_pred             -----------HHH------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           93 -----------RTD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        93 -----------R~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                                 ...      |-+. ...|+.++-+||.++.++..+|+..|...+.
T Consensus       115 rv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~  170 (493)
T TIGR03708       115 RLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPE  170 (493)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence                       111      2233 6778889999999999999999999987553

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=95.35  E-value=0.013  Score=69.98  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .+|.+-|||||||||+|+.|++.++  +.+++.+.+
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~--~~~~~~g~~   68 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLG--AQCLNTGSF   68 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHH
Confidence            6899999999999999999999999  445776655

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.34  E-value=0.06  Score=59.75  Aligned_cols=38  Identities=29%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN   57 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i~   57 (611)
                      +.+++|+||+|+||||++.+|+..+     +.....|+.|.++
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            4689999999999999999887543     2345677887754

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.34  E-value=0.017  Score=53.30  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++++.|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997765

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.33  E-value=0.042  Score=58.99  Aligned_cols=102  Identities=9%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC----CCcHHHHHHHHHHHHHCCCcEEEecCC---CC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRCN---LE   89 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~----~~~~~~~~~~~~~~L~~Gk~VIID~tn---l~   89 (611)
                      ..-++|.|+||+|||+++..++..+   +..+..++.+.+....    +...... ....+.+..-..+|||...   .+
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIIDDlG~e~~t  261 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKEL-EEVYDLLINCDLLIIDDLGTEKIT  261 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhH-HHHHHHhccCCEEEEeccCCCCCC
Confidence            3669999999999999999998764   2233344443332110    0000011 1113555555678999853   33


Q ss_pred             HHHHHHHHHh--CCC-CCeEEEEEEeCCHHHHHHHH
Q 007244           90 REQRTDFVKL--GGP-EVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        90 ~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ......+..+  ... .-..++|--..+.+.+..+.
T Consensus       262 ~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~  297 (329)
T PRK06835        262 EFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY  297 (329)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence            4555555555  221 12234566677777766554

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=95.32  E-value=0.16  Score=49.53  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------------CCC---------------------Cc-H
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GKS---------------------GT-K   64 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------------~~~---------------------~~-~   64 (611)
                      +|-+.|..|||++|+|++|++.++.++  ++.+.+..               ++.                     .. .
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~--~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPY--YDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD   78 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--E--E-HHHHHHCT------------SS-HHH--HH---HHS-------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCcc--CCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence            688999999999999999999999544  66544410               000                     00 0


Q ss_pred             HHHH---HHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           65 VQCL---TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        65 ~~~~---~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..++   ..+...+....++||-+       |-.-.-++..+ .+.-|++..|.+...+|+.+|..
T Consensus        79 ~~~~~~~~~~i~~la~~~~~Vi~G-------R~a~~il~~~~-~~l~V~i~A~~~~Rv~ri~~~~~  136 (179)
T PF13189_consen   79 DKIFRAQSEIIRELAAKGNCVIVG-------RCANYILRDIP-NVLHVFIYAPLEFRVERIMEREG  136 (179)
T ss_dssp             -HHHHHHHHHHHHHHH---EEEES-------TTHHHHTTT-T-TEEEEEEEE-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCCEEEEe-------cCHhhhhCCCC-CeEEEEEECCHHHHHHHHHHHcC
Confidence            1111   23334444444666666       22221124433 35567788999999999999964

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.31  E-value=0.1  Score=59.58  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=26.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|.||||+||||+|+.+++.++
T Consensus        34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         34 QQRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456678899999999999999999999875

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.30  E-value=0.089  Score=59.70  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i~   57 (611)
                      ..+.+|+|+|++|+||||++.+|+..+     +.....++.|.++
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR  392 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR  392 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence            346789999999999999999987643     2235567777765

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.028  Score=62.97  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=32.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      .+-|+=|+|+||||.|||-+|++++.+.+.+|++.+.-.
T Consensus       334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE  372 (752)
T KOG0734|consen  334 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE  372 (752)
T ss_pred             CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence            455888999999999999999999999998886665433

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.29  E-value=0.015  Score=59.50  Aligned_cols=28  Identities=18%  Similarity=0.490  Sum_probs=24.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..+.+++|+|++||||||+++.+...+.
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3456899999999999999999998865

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06526 transposase; Provisional

Probab=95.28  E-value=0.036  Score=57.29  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcH-HHHHHHHHHHHHCCCcEEEecCCCC---HH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCNLE---RE   91 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L~~Gk~VIID~tnl~---~~   91 (611)
                      .+.-++|+||||+|||++|..+....   +.....++...+.+...... ..-.......+..-..+|||...+.   ..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~  176 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPE  176 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHH
Confidence            34568999999999999999987653   22221122221110000000 0000111223334456899996543   44


Q ss_pred             HHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           92 QRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        92 ~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ....+..+  ..+.-..+++.-..|...+.+....+         -....++.|+..
T Consensus       177 ~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~---------~~a~ai~dRl~~  224 (254)
T PRK06526        177 AANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDD---------VVAAAMIDRLVH  224 (254)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCCh---------HHHHHHHHHHhc
Confidence            44444444  22222235666677877766544221         134556666654

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.26  E-value=0.094  Score=53.87  Aligned_cols=29  Identities=21%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      +.|.-++++|++||||||++..++..+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence            45667899999999999999999887654

This is thought to be an ATPase involved in viral DNA packaging [].

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=95.25  E-value=0.013  Score=58.76  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=26.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~   53 (611)
                      -+++.++++.|+||||||+|+.+++...    +.....++.
T Consensus        16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~   56 (226)
T PF06745_consen   16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF   56 (226)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence            3567899999999999999999876432    555555554

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.24  E-value=0.015  Score=54.06  Aligned_cols=29  Identities=38%  Similarity=0.692  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~I   51 (611)
                      |+|.|+||.||||+++.+++..+..+.+|
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence            78999999999999999999999777766

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.23  E-value=0.022  Score=52.55  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      -+...+|+|.|.-|||||||++.+++.++
T Consensus        12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   12 LKPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             HSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35568999999999999999999999887

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.20  E-value=0.14  Score=58.99  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------Eee--------cchhc-cCC-CCcHHHHHHHHHHHH-
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------RIC--------QDTIN-KGK-SGTKVQCLTSASSAL-   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------~Is--------~D~i~-~~~-~~~~~~~~~~~~~~L-   75 (611)
                      ....+..++|.||+|+||||+|+.+++.+.....         ..+        .|.+. ++. ....+++ ..+.+.+ 
T Consensus        34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~i-r~l~~~~~  112 (576)
T PRK14965         34 TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDI-RELRENVK  112 (576)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHH-HHHHHHHH
Confidence            4566889999999999999999999998652100         000        11111 111 0011111 2222222 


Q ss_pred             -----HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 -----KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 -----~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                           ...+.+|||... ++......+++. .+....+.+|+.....+.+..-+..|-.
T Consensus       113 ~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~  171 (576)
T PRK14965        113 YLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ  171 (576)
T ss_pred             hccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhh
Confidence                 123568899744 444555667666 6665566677666666666666666654

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.025  Score=66.15  Aligned_cols=39  Identities=21%  Similarity=0.400  Sum_probs=33.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D   54 (611)
                      ...-|.=++|+||||+|||-+|++++.+.+.||..++.-
T Consensus       340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGS  378 (774)
T KOG0731|consen  340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGS  378 (774)
T ss_pred             CCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechH
Confidence            345578899999999999999999999999888777653

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.18  E-value=0.022  Score=58.57  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      -++..++++.|+||||||+|+.+.+..   .+.+...|+.+.-...-.....++--........|...|+|...
T Consensus        20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~   93 (260)
T COG0467          20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL   93 (260)
T ss_pred             CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence            467789999999999999999997643   24445556543321110001111111223566778888888833

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.17  E-value=0.11  Score=57.51  Aligned_cols=72  Identities=15%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhccCCC-----------------CcHHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSAL   75 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~~~~~-----------------~~~~~~~~~~~~~L   75 (611)
                      ..+.+|.|+|++|+||||+..+|+..+    + .....+..|.++-+..                 ...... ..+...+
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl-~~al~~l  267 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL-QLMLHEL  267 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH-HHHHHHh
Confidence            456799999999999999999988653    2 2234456666542211                 011111 2333445


Q ss_pred             HCCCcEEEecCCCCH
Q 007244           76 KKGKSVFLDRCNLER   90 (611)
Q Consensus        76 ~~Gk~VIID~tnl~~   90 (611)
                      .....++||......
T Consensus       268 ~~~d~VLIDTaGrsq  282 (420)
T PRK14721        268 RGKHMVLIDTVGMSQ  282 (420)
T ss_pred             cCCCEEEecCCCCCc
Confidence            556678888754444

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.16  E-value=0.12  Score=59.82  Aligned_cols=111  Identities=12%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE----------Eee--------cchhc-cC-CCCcHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA----------RIC--------QDTIN-KG-KSGTKVQCLTSASSAL   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~----------~Is--------~D~i~-~~-~~~~~~~~~~~~~~~L   75 (611)
                      ....+..++|.|+||+||||+|+.+++.+.....          ..+        .|.+. +. .....+++. .+.+.+
T Consensus        34 ~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~  112 (585)
T PRK14950         34 EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAR-EIIERV  112 (585)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHH-HHHHHH
Confidence            3456788999999999999999999988652110          000        01110 00 111122221 222222


Q ss_pred             ------HCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 ------KKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ------~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                            ...+.+|||... ++......+++. ........+|+.....+.+...+..|..
T Consensus       113 ~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~  172 (585)
T PRK14950        113 QFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQ  172 (585)
T ss_pred             hhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccc
Confidence                  223568888743 444555566666 5544445566666666666676766654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.14  E-value=0.085  Score=59.37  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~-~~~~~Is~D~i~   57 (611)
                      .++.+|+|+||+|+||||.+.+|+..+    + ..+..++.|.++
T Consensus       254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR  298 (484)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence            346899999999999999999988654    2 234567777653

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=95.11  E-value=0.021  Score=63.03  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      .-|+|.||||+|||++|+.+++.++.+|..++.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da  149 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA  149 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence            469999999999999999999988877755543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.10  E-value=0.022  Score=57.32  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++..+..|+||+|||||||.+.+-+-.
T Consensus        30 i~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          30 IPKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             ccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            4567899999999999999999886543

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=95.10  E-value=0.13  Score=54.56  Aligned_cols=112  Identities=18%  Similarity=0.157  Sum_probs=64.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eeecchh--c--cCCCCcHHHHHHHHHH----HH-HCCCcEEEec
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTI--N--KGKSGTKVQCLTSASS----AL-KKGKSVFLDR   85 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is~D~i--~--~~~~~~~~~~~~~~~~----~L-~~Gk~VIID~   85 (611)
                      ....|..+++.||+|+||+|+|+.+++.+..... ....|.+  .  ++.....+++.+.+..    .. ...+.+|||.
T Consensus        22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~  101 (313)
T PRK05564         22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN  101 (313)
T ss_pred             cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence            5677889999999999999999999987531100 0001110  0  2222222333332221    11 1224577877


Q ss_pred             -CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           86 -CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        86 -tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       -.++......+++. .+.+....+|++....+.+..-++.|..
T Consensus       102 ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~  145 (313)
T PRK05564        102 SEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ  145 (313)
T ss_pred             hhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence             34555566677777 7666556666665556666666666654

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.10  E-value=0.039  Score=64.35  Aligned_cols=37  Identities=27%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      |.-|+|+|+||+||||+++.++.+.+.++..++...+
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~  221 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF  221 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh
Confidence            3449999999999999999999999988877765444

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=95.08  E-value=0.17  Score=58.54  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++|.|++|+|||+|+..+....
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a  338 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYA  338 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999988754

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=95.08  E-value=0.17  Score=58.24  Aligned_cols=112  Identities=14%  Similarity=0.121  Sum_probs=62.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe-E--Eee--------------cchhc-cCCC-CcHHHHHHHHHHH--
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-A--RIC--------------QDTIN-KGKS-GTKVQCLTSASSA--   74 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~--~Is--------------~D~i~-~~~~-~~~~~~~~~~~~~--   74 (611)
                      .+..+..++|.|++|+||||+|+.+++.+.... .  .-+              .|.+. ++.. ...+++.......  
T Consensus        34 ~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~  113 (563)
T PRK06647         34 SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMF  113 (563)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHh
Confidence            455678899999999999999999999875210 0  000              11111 1111 1112222222111  


Q ss_pred             ---HHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           75 ---LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        75 ---L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         ....+.+|||... ++......+++. .+.+..+.+|+.......+...+..|..
T Consensus       114 ~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~  171 (563)
T PRK06647        114 PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ  171 (563)
T ss_pred             chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhce
Confidence               1233568888744 444555666666 6655556666665555666666777754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.06  E-value=0.017  Score=55.97  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      |+|+|+||+||||+.+++.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7899999999999999998876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.06  E-value=0.38  Score=51.60  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEee-cchh--c--cCCC-----CcHHHHHHHHHHHHHCCCcEEEecC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARIC-QDTI--N--KGKS-----GTKVQCLTSASSALKKGKSVFLDRC   86 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is-~D~i--~--~~~~-----~~~~~~~~~~~~~L~~Gk~VIID~t   86 (611)
                      +..|+++|++||||||+.+.|.....   .....+. .|..  .  ....     .......+.++.+|+.+-+.|+=+-
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE  223 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE  223 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence            34689999999999999999988652   1112222 1111  1  0000     0011234677788888877666554


Q ss_pred             CCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           87 NLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        87 nl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      -...+. ..+++.  ..+...+..+.-+ +......|+..-.
T Consensus       224 iRg~ea-~~~l~a~~tGh~G~itTiHA~-s~~~a~~Rl~~l~  263 (323)
T PRK13833        224 VRDGAA-LTLLKAWNTGHPGGVTTIHSN-TAMSALRRLEQLT  263 (323)
T ss_pred             cCCHHH-HHHHHHHcCCCCceEEEECCC-CHHHHHHHHHHHh
Confidence            444443 334444  2232234555544 3444677876543

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.04  E-value=0.37  Score=51.11  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=63.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEee-cchhc--c-CCC---------C-cHHHHHHHHHHHHHCCCcEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC-QDTIN--K-GKS---------G-TKVQCLTSASSALKKGKSVF   82 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is-~D~i~--~-~~~---------~-~~~~~~~~~~~~L~~Gk~VI   82 (611)
                      ....|+++|++||||||+.+.+...++..  .+.|. ...+.  . ...         . ......+.+..+|+..-.+|
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i  222 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI  222 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence            35689999999999999999998776532  22221 11111  0 000         0 00113356666777766544


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      +=+-....+.. .+++. ...+. .+..+. ..+......|+........ .....+.+.+.+...
T Consensus       223 i~gE~r~~e~~-~~l~a~~~g~~~~i~T~H-a~~~~~~~~Rl~~l~~~~~-~~~g~~~~~~~~~i~  285 (308)
T TIGR02788       223 ILGELRGDEAF-DFIRAVNTGHPGSITTLH-AGSPEEAFEQLALMVKSSQ-AGLGLDFAYIVKLVR  285 (308)
T ss_pred             EEeccCCHHHH-HHHHHHhcCCCeEEEEEe-CCCHHHHHHHHHHHhhccc-cccCCCHHHHHHHHH
Confidence            44434444433 34443 32222 233333 3456666888876533100 011355666544443

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.03  E-value=0.12  Score=55.91  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=25.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..|..++|.||||+||||+|+.+++...
T Consensus        35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~   64 (367)
T PRK14970         35 NNHLAQALLFCGPRGVGKTTCARILARKIN   64 (367)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345677899999999999999999988764

>CHL00206 ycf2 Ycf2; Provisional

Probab=95.02  E-value=0.044  Score=69.37  Aligned_cols=42  Identities=14%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~   58 (611)
                      ...|.=|+|+||||+|||.+|++++.+.+.++..|+...+..
T Consensus      1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            355778999999999999999999999999998888766653

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.03  Score=57.56  Aligned_cols=37  Identities=22%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      -.+|.-++|-||||+|||-++++++......|.++..
T Consensus       186 idpprgvllygppg~gktml~kava~~t~a~firvvg  222 (408)
T KOG0727|consen  186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG  222 (408)
T ss_pred             CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc
Confidence            4567789999999999999999999887766665543

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.01  E-value=0.089  Score=56.35  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=27.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~   53 (611)
                      -+...++.+.|+|||||||||-+++..   .+.....|+.
T Consensus        52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~   91 (325)
T cd00983          52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA   91 (325)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence            345689999999999999999997743   3444555654

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.01  E-value=0.032  Score=59.89  Aligned_cols=38  Identities=29%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      .+.+.+|.++|+||||||||+..+...+   +....+++.|
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D   93 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD   93 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence            5678999999999999999999976554   3344555544

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=95.01  E-value=0.042  Score=55.87  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...++++.|+||+||||++.+++..
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~   47 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYG   47 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999998776543

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=95.01  E-value=0.077  Score=56.33  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ++.+|+|+||.+||||-+|-.|+++++..  +||.|..
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~e--IIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGE--IISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCc--EEecchh
Confidence            46799999999999999999999999954  4666544

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.00  E-value=0.17  Score=58.75  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...-+.-++|.||+|+||||+|+.+++.+.
T Consensus        34 ~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~   63 (620)
T PRK14954         34 MDRVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (620)
T ss_pred             cCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            345677899999999999999999999876

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=95.00  E-value=0.037  Score=53.18  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~   53 (611)
                      ++++.|+||+|||+|+.+++..   .+.....++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~   35 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL   35 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            3789999999999999987653   2344445554

A related protein is found in archaea.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.99  E-value=0.19  Score=58.38  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|+|++|+||||+|+.+++.++
T Consensus        34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456688999999999999999999998875

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.99  E-value=0.18  Score=48.16  Aligned_cols=82  Identities=15%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhcc--------CCC-----CcH--HHHHHHHHHHHHCCCc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINK--------GKS-----GTK--VQCLTSASSALKKGKS   80 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~~--------~~~-----~~~--~~~~~~~~~~L~~Gk~   80 (611)
                      .+..++.|+|++|||||||.+.++.....  .-+.++...+..        ...     ...  .+....++..+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i  103 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL  103 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence            45678999999999999999999865431  122333211111        000     011  1223444444555566


Q ss_pred             EEEec--CCCCHHHHHHHHHh
Q 007244           81 VFLDR--CNLEREQRTDFVKL   99 (611)
Q Consensus        81 VIID~--tnl~~~~R~~~~~l   99 (611)
                      +++|.  ..+....+..+.++
T Consensus       104 lllDEP~~~LD~~~~~~l~~~  124 (163)
T cd03216         104 LILDEPTAALTPAEVERLFKV  124 (163)
T ss_pred             EEEECCCcCCCHHHHHHHHHH
Confidence            77777  33555666666555

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.99  E-value=0.021  Score=50.66  Aligned_cols=22  Identities=18%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      |+++|.+|||||||.+.+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=94.99  E-value=0.12  Score=53.91  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=25.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...|.-++|.||||+||||.|..+++.+.
T Consensus        21 ~~~~halL~~Gp~G~Gktt~a~~lA~~l~   49 (325)
T COG0470          21 GRLPHALLFYGPPGVGKTTAALALAKELL   49 (325)
T ss_pred             CCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence            45677899999999999999999998865

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=94.96  E-value=0.17  Score=59.53  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=61.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE--------------eecchhc-cCCC-CcHHHHHHHHHHHHH---
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------ICQDTIN-KGKS-GTKVQCLTSASSALK---   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~--------------Is~D~i~-~~~~-~~~~~~~~~~~~~L~---   76 (611)
                      ....+..++|.||+|+||||+|+.+++.+......              .+.|.+. ++.. ....++ +.+.+.+.   
T Consensus        36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~I-ReLie~~~~~P  114 (725)
T PRK07133         36 SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEI-RELIENVKNLP  114 (725)
T ss_pred             cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHH-HHHHHHHHhch
Confidence            45668899999999999999999999886532100              0011111 1100 011222 22222222   


Q ss_pred             ---CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 ---KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 ---~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         ..+.+|||... ++......+++. .+.+..+.+|++....+.+...+..|-.
T Consensus       115 ~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq  170 (725)
T PRK07133        115 TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ  170 (725)
T ss_pred             hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence               22468898844 344445556665 5555555666666556666556666653

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.95  E-value=0.23  Score=53.56  Aligned_cols=107  Identities=20%  Similarity=0.171  Sum_probs=58.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchhc-----------cCCCCc-HHHHHHHHHHHHHCCCcEEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTIN-----------KGKSGT-KVQCLTSASSALKKGKSVFL   83 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~i~-----------~~~~~~-~~~~~~~~~~~L~~Gk~VII   83 (611)
                      ...+|+++||+||||||+.+.+.......   .+..-.|.+.           ..+.+. ...+...++.+|+.+-++|+
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~  200 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL  200 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence            35789999999999999999988765421   1111122211           101111 11234667778887766555


Q ss_pred             ecCCCCHHHHHHHHHhCCCCCeEEEEEEe-CCHHHHHHHHHhcc
Q 007244           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRI  126 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~Rl~~R~  126 (611)
                      =+-....+.....++....|..+ +..+. .+......|+..-.
T Consensus       201 vgEird~~~~~~~l~aa~tGh~v-~~T~Ha~~~~~~~~Rl~~~~  243 (343)
T TIGR01420       201 IGEMRDLETVELALTAAETGHLV-FGTLHTNSAAQTIERIIDVF  243 (343)
T ss_pred             EeCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCHHHHHHHHHHhc
Confidence            44345555444444442223322 22233 35556778887554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.95  E-value=0.018  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      |+|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999887644

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.94  E-value=0.27  Score=54.82  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++|.|+||+|||++++.+...+
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l  154 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHH
Confidence            38999999999999999888753

>PRK00089 era GTPase Era; Reviewed

Probab=94.93  E-value=0.15  Score=53.28  Aligned_cols=25  Identities=36%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...|.++|.||||||||.+.+...
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~   28 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQ   28 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999998743

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=94.88  E-value=0.26  Score=52.93  Aligned_cols=122  Identities=14%  Similarity=0.169  Sum_probs=70.1

Q ss_pred             ccccccccccccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE---ee--------------cchh--ccC---CCC
Q 007244            5 IDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---IC--------------QDTI--NKG---KSG   62 (611)
Q Consensus         5 ~~~~c~~~~~~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~---Is--------------~D~i--~~~---~~~   62 (611)
                      |...-|......+..|.-+++.||+|+||+|+|+.+++.+......   -+              .|.+  ..+   ...
T Consensus         7 Wl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i   86 (328)
T PRK05707          7 WQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTI   86 (328)
T ss_pred             CcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCC
Confidence            4444444444557778999999999999999999999876421000   00              0111  111   111


Q ss_pred             cHHHHHHHHHHHHH------CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           63 TKVQCLTSASSALK------KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        63 ~~~~~~~~~~~~L~------~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..+++.+ +.+.+.      ..+.+|||... ++......+++. .+.+....+|.+--..+.+..-++.|-.
T Consensus        87 ~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~  158 (328)
T PRK05707         87 KVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ  158 (328)
T ss_pred             CHHHHHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence            2233322 222222      12457787643 566777788888 7766666677666666555555555543

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.24  Score=55.69  Aligned_cols=31  Identities=35%  Similarity=0.704  Sum_probs=27.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I   51 (611)
                      .=++|.||||||||++|.+++...+.||+-|
T Consensus       539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi  569 (744)
T KOG0741|consen  539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKI  569 (744)
T ss_pred             eEEEEecCCCCChHHHHHHHHhhcCCCeEEE
Confidence            4578999999999999999999988888644

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=94.87  E-value=0.13  Score=60.00  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|+|++|+||||+|+.+++.++
T Consensus        34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         34 EGRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             cCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            456688999999999999999999999865

>COG4240 Predicted kinase [General function prediction only]

Probab=94.83  E-value=0.058  Score=54.78  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=43.9

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHc---C-CCeEEeecchhc-------------------cCCCCcHH-HHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS---A-RPWARICQDTIN-------------------KGKSGTKV-QCLTS   70 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~-~~~~~Is~D~i~-------------------~~~~~~~~-~~~~~   70 (611)
                      +..+.|.++.++||-||||||++..+...+   + .....++.|+++                   +|-.++.+ .+...
T Consensus        45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln  124 (300)
T COG4240          45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN  124 (300)
T ss_pred             hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence            355679999999999999999988754432   2 344566777773                   12233333 34566


Q ss_pred             HHHHHHCCCc
Q 007244           71 ASSALKKGKS   80 (611)
Q Consensus        71 ~~~~L~~Gk~   80 (611)
                      +.+++.+|..
T Consensus       125 VLnai~~g~~  134 (300)
T COG4240         125 VLNAIARGGP  134 (300)
T ss_pred             HHHHHhcCCC
Confidence            7777777764

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=94.83  E-value=0.034  Score=55.14  Aligned_cols=41  Identities=29%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             CCCc-EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhc
Q 007244           17 KWKQ-ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTIN   57 (611)
Q Consensus        17 ~~~p-~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~   57 (611)
                      ...| ..|-+.||||||||++..++.+.+..  ...+|..|.+.
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t   52 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT   52 (202)
T ss_pred             hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence            3455 78999999999999999998777642  34566666653

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=94.82  E-value=0.22  Score=51.14  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~   53 (611)
                      -....++++.|+||+|||||+.+++...    +.....++.
T Consensus        27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            3455799999999999999999876542    434445554

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00101 ureG urease accessory protein UreG

Probab=94.81  E-value=0.027  Score=55.99  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=23.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      |..|.|+|++||||||+.+++...+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            56899999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK13768 GTPase; Provisional

Probab=94.80  E-value=0.034  Score=57.34  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=27.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      |+.++++.|++||||||++..++..+   +.....|+.|
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D   39 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD   39 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence            46789999999999999998877543   3455566654

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=94.80  E-value=0.16  Score=57.94  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe-E-----Ee-----------ecchhccCCC--CcHHHHHHHHHHH--
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-A-----RI-----------CQDTINKGKS--GTKVQCLTSASSA--   74 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~-----~I-----------s~D~i~~~~~--~~~~~~~~~~~~~--   74 (611)
                      ....+.+++|.|++|+||||+|+.+++.+...- .     ..           ..|.+.-+..  ...+.+...+...  
T Consensus        32 ~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~  111 (535)
T PRK08451         32 NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKY  111 (535)
T ss_pred             cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhh
Confidence            456788999999999999999999998763100 0     00           0111110000  1122333333221  


Q ss_pred             ---HHCCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           75 ---LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        75 ---L~~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         ....+.+|||... ++......+++. .+.+..+.+|++......+..-+..|..
T Consensus       112 ~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~  169 (535)
T PRK08451        112 KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQ  169 (535)
T ss_pred             CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhce
Confidence               1223568999844 455555666666 6655556666666555444444555543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.80  E-value=0.029  Score=63.74  Aligned_cols=29  Identities=17%  Similarity=0.339  Sum_probs=25.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      ..+.+++|.|||||||||..+.|+++++.
T Consensus        43 ~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   43 SPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34569999999999999999999999884

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.77  E-value=0.027  Score=55.90  Aligned_cols=29  Identities=28%  Similarity=0.530  Sum_probs=25.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...+.+|.|+|++|||||||.+++++.++
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45688999999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.76  E-value=0.018  Score=52.63  Aligned_cols=28  Identities=32%  Similarity=0.357  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+|++|||||||.+.+.....
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc
Confidence            3456899999999999999999876543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.14  Score=57.49  Aligned_cols=126  Identities=18%  Similarity=0.263  Sum_probs=74.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL   99 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l   99 (611)
                      +=|+|-||||+|||-+|+++-+-++.. =.+++...|-+...+..++..   ++..+       |       .-++|+.+
T Consensus       257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~Nv---R~LFa-------D-------AEeE~r~~  319 (744)
T KOG0741|consen  257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENV---RKLFA-------D-------AEEEQRRL  319 (744)
T ss_pred             eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHH---HHHHH-------h-------HHHHHHhh
Confidence            458999999999999999999887732 124565555444444443322   11111       2       24455555


Q ss_pred             -CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC---ChhhHHHHHH
Q 007244          100 -GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ---NENDVQAALD  174 (611)
Q Consensus       100 -~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~---~~~evd~av~  174 (611)
                       ...+  +++|.+|-=..+|++|=..++.      ..+.+.++++++....--   |....|+++-   ..+-+|+++-
T Consensus       320 g~~Sg--LHIIIFDEiDAICKqRGS~~g~------TGVhD~VVNQLLsKmDGV---eqLNNILVIGMTNR~DlIDEALL  387 (744)
T KOG0741|consen  320 GANSG--LHIIIFDEIDAICKQRGSMAGS------TGVHDTVVNQLLSKMDGV---EQLNNILVIGMTNRKDLIDEALL  387 (744)
T ss_pred             CccCC--ceEEEehhhHHHHHhcCCCCCC------CCccHHHHHHHHHhcccH---HhhhcEEEEeccCchhhHHHHhc
Confidence             3333  4677777666777766544432      268889999888765221   2233455543   3456666653

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=94.72  E-value=0.14  Score=52.67  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchh--------------------ccCCCCcHH-HHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI--------------------NKGKSGTKV-QCLTSAS   72 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i--------------------~~~~~~~~~-~~~~~~~   72 (611)
                      .+..|++|.|.||+|||+|+..++...    +.+...++.++=                    +.+.....+ +....+.
T Consensus        17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~   96 (259)
T PF03796_consen   17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA   96 (259)
T ss_dssp             -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH
T ss_pred             CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH
Confidence            345799999999999999999987642    334555664221                    122111111 1123344


Q ss_pred             HHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC
Q 007244           73 SALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL  113 (611)
Q Consensus        73 ~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~  113 (611)
                      ..|.....+|.|...++.......++. +.....+.+|++|-
T Consensus        97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy  138 (259)
T PF03796_consen   97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY  138 (259)
T ss_dssp             HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred             HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence            556665666667666677665555543 22213445666663

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.72  E-value=0.025  Score=50.37  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+++|.||+|||||.+.|...
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999863

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.72  E-value=0.27  Score=56.97  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=25.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..-+..++|.|+||+||||+|+.+++.+.
T Consensus        35 ~ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         35 NRVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            34467899999999999999999999876

>PRK08939 primosomal protein DnaI; Reviewed

Probab=94.69  E-value=0.11  Score=55.21  Aligned_cols=126  Identities=13%  Similarity=0.060  Sum_probs=71.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcH-HHHHHHHHHHHHCCCcEEEecCC---CCHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCN---LERE   91 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~-~~~~~~~~~~L~~Gk~VIID~tn---l~~~   91 (611)
                      ...-++|.|++|+|||+++..++..+   +.....+....+........ ..-+....+.+..-...|||...   .+.+
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~  234 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSW  234 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHH
Confidence            34569999999999999999998775   33333344332211000000 00112334556677779999954   5566


Q ss_pred             HHHHHHH-h--CC-CCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           92 QRTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        92 ~R~~~~~-l--~~-~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      .|..++. +  .. .....++|--..+.+.+.+++..-..  +..+......++.|+..
T Consensus       235 ~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~~~~~--g~~e~~~a~ri~dRI~~  291 (306)
T PRK08939        235 VRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQR--GEDETWKAARIMERIRY  291 (306)
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHhhhcc--CcchhhHHHHHHHHHHH
Confidence            6755543 2  22 23445677778899999888742211  00011244566666654

>PRK04328 hypothetical protein; Provisional

Probab=94.68  E-value=0.07  Score=54.83  Aligned_cols=68  Identities=18%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCCcHHHHH-HHHHHHHHCCCcEEEecC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCL-TSASSALKKGKSVFLDRC   86 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~~~~~~~-~~~~~~L~~Gk~VIID~t   86 (611)
                      ++..++++.|+||||||+|+.+++..   .+.....++.+.-... .......+ -.+...+..|...++|..
T Consensus        21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~-i~~~~~~~g~d~~~~~~~~~l~iid~~   92 (249)
T PRK04328         21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQ-VRRNMRQFGWDVRKYEEEGKFAIVDAF   92 (249)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHH-HHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence            46789999999999999999987643   2334444554321100 00000000 113445566777888873

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.64  E-value=0.063  Score=63.55  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .-++|+|+||+|||++++.+++..
T Consensus       204 ~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       204 NNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999875

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=94.63  E-value=0.19  Score=56.19  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..+..++|.|+||+||||+|+.+++.+.
T Consensus        35 ~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~   64 (451)
T PRK06305         35 FNRAAHAYLFSGIRGTGKTTLARIFAKALN   64 (451)
T ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            345578899999999999999999998764

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=94.63  E-value=0.036  Score=60.98  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~-~~Is~D~i   56 (611)
                      ......|+|+|++||||||++++|++.++..+ ..+.++.+
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~  256 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV  256 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence            34457899999999999999999999988554 23344444

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.62  E-value=0.13  Score=55.00  Aligned_cols=74  Identities=22%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC-------------------CCC--cHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-------------------KSG--TKVQCLTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~-------------------~~~--~~~~~~~~~   71 (611)
                      ..++|.+|+++|..|+||||-+-+|+..+.   ......-.|.+|-+                   ..+  +..-+++.+
T Consensus       135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi  214 (340)
T COG0552         135 KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAI  214 (340)
T ss_pred             cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence            456799999999999999998888776543   33333456777521                   112  223456788


Q ss_pred             HHHHHCCCcEEEecCCCC
Q 007244           72 SSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~   89 (611)
                      ..+-.+|.++|+=.|..+
T Consensus       215 ~~Akar~~DvvliDTAGR  232 (340)
T COG0552         215 QAAKARGIDVVLIDTAGR  232 (340)
T ss_pred             HHHHHcCCCEEEEeCccc
Confidence            888888877554444433

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=94.61  E-value=0.29  Score=52.46  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=65.2

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe------EEee-----------cchhc---cCCCCcHHHHHHHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPW------ARIC-----------QDTIN---KGKSGTKVQCLTSASSA   74 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~------~~Is-----------~D~i~---~~~~~~~~~~~~~~~~~   74 (611)
                      ..+..|..++|.||+|+||+|+|+.+++.+....      .-.+           .|...   ++.....+++.+.+...
T Consensus        23 ~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~  102 (329)
T PRK08058         23 AKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEF  102 (329)
T ss_pred             HcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHH
Confidence            3567789999999999999999999988753110      0000           01110   11111223333333221


Q ss_pred             H-----HCCCcEEEec-CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           75 L-----KKGKSVFLDR-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        75 L-----~~Gk~VIID~-tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      -     ...+.+|||. -.++......+++. .+.+....+|++-...+.+..-++.|-.
T Consensus       103 ~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~  162 (329)
T PRK08058        103 SKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ  162 (329)
T ss_pred             hhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence            1     1235688887 33555566677777 7766666666666666666666666654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=0.029  Score=56.99  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~   58 (611)
                      +...+.+++||.||||||++..++-.-.  |.+...+.+.+
T Consensus        28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~~   66 (251)
T COG0396          28 KEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFD   66 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEEC
Confidence            5567899999999999999999986543  44444444443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.58  E-value=0.046  Score=57.70  Aligned_cols=39  Identities=31%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      ....+.+|.|+|+|||||||++..+...+   +....+|+.|
T Consensus        30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            34567888999999999999999987654   3334455555

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.57  E-value=0.027  Score=57.26  Aligned_cols=25  Identities=36%  Similarity=0.395  Sum_probs=21.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ++..++.++||+||||||+.+.+.-
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999997754

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.56  E-value=0.32  Score=52.62  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=55.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEee-cchhc-cCC-----------CC-cHHHHHHHHHHHHHCCCcEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC-QDTIN-KGK-----------SG-TKVQCLTSASSALKKGKSVF   82 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is-~D~i~-~~~-----------~~-~~~~~~~~~~~~L~~Gk~VI   82 (611)
                      ....|+++|++||||||+++.+....+..  .+.|. ...+. ...           .+ ......+.+..+|+..-++|
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I  240 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI  240 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence            34679999999999999999999876532  22221 11111 000           00 00112356667777776665


Q ss_pred             EecCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           83 LDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      +=+--...+.. .+++.  ..+...+..+.-. +......|+..-
T Consensus       241 ivGEiR~~ea~-~~l~a~~tGh~G~ltTiHa~-s~~~a~~Rl~~l  283 (344)
T PRK13851        241 LLGEMRDDAAW-AYLSEVVSGHPGSISTIHGA-NPVQGFKKLFSL  283 (344)
T ss_pred             EEEeeCcHHHH-HHHHHHHhCCCcEEECCCCC-CHHHHHHHHHHH
Confidence            55534444433 33333  3332223344333 444567776544

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.54  E-value=0.24  Score=51.47  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeec-c--hhc-cCCC----Cc--HHHHHHHHHHHHHCCCcEEEecCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ-D--TIN-KGKS----GT--KVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~-D--~i~-~~~~----~~--~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ..-+|+++|++||||||+.+.+....... ...+.- |  ++. .+..    ..  .....+.++.+|+.+-++|+=+--
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi  158 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI  158 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence            34589999999999999999988766422 112221 1  111 1100    00  012346777888888777776655


Q ss_pred             CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      ...+....+++. ..-+.-+..+.- -+......|+..
T Consensus       159 R~~e~a~~~~~aa~tGh~v~tTlHa-~~~~~ai~Rl~~  195 (264)
T cd01129         159 RDAETAEIAVQAALTGHLVLSTLHT-NDAPGAITRLLD  195 (264)
T ss_pred             CCHHHHHHHHHHHHcCCcEEEEecc-CCHHHHHHHHHH
Confidence            555555555555 322222222222 244556666653

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=94.54  E-value=0.12  Score=54.93  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=28.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +.+|+++||+|||||.+|-+|++..+   .+||.|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGKA---EIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC---cEEeccHH
Confidence            34899999999999999999999843   46776655

>TIGR02012 tigrfam_recA protein RecA

Probab=94.54  E-value=0.12  Score=55.35  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      -+...++.+.|+|||||||||.+++...   +.....|+.
T Consensus        52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~   91 (321)
T TIGR02012        52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA   91 (321)
T ss_pred             CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence            3456899999999999999999876543   334445543

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.53  E-value=0.23  Score=46.77  Aligned_cols=82  Identities=24%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhcc-------CCC-----Cc--HHHHHHHHHHHHHCCCcE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQDTINK-------GKS-----GT--KVQCLTSASSALKKGKSV   81 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is~D~i~~-------~~~-----~~--~~~~~~~~~~~L~~Gk~V   81 (611)
                      .+..++.|+|++|||||||.+.+...+...  .+.++...+..       ...     ..  ..+....++..+.....+
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~  102 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL  102 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence            344789999999999999999998754421  12222211110       000     11  112234455555566778


Q ss_pred             EEec--CCCCHHHHHHHHHh
Q 007244           82 FLDR--CNLEREQRTDFVKL   99 (611)
Q Consensus        82 IID~--tnl~~~~R~~~~~l   99 (611)
                      |+|.  .++....+..+.++
T Consensus       103 ilDEp~~~lD~~~~~~l~~~  122 (157)
T cd00267         103 LLDEPTSGLDPASRERLLEL  122 (157)
T ss_pred             EEeCCCcCCCHHHHHHHHHH
Confidence            8887  33555556655554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=94.53  E-value=0.58  Score=45.33  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARP   47 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~   47 (611)
                      -+.|.++|+-.|||||++++|+..++.+
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHhCCC
Confidence            3678999999999999999999998743

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=94.52  E-value=0.025  Score=57.57  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-----chhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLERE   91 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-----D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~   91 (611)
                      .+.|+||+|-|..||||+.+++.|.+.++..++.+-.     +.-....+. |    .--...=..|..+|+|+..+...
T Consensus        28 ~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~~p~l-w----Rfw~~lP~~G~I~if~rSWY~~~  102 (228)
T PF03976_consen   28 AGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELRRPFL-W----RFWRALPARGQIGIFDRSWYEDV  102 (228)
T ss_dssp             HHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHTS-TT-H----HHHTTS--TT-EEEEES-GGGGG
T ss_pred             cCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcCCCcH-H----HHHHhCCCCCEEEEEecchhhHH
Confidence            3467999999999999999999999887755443321     110000110 0    11111124567777777544431


Q ss_pred             H-------------------HHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           92 Q-------------------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        92 ~-------------------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                      -                   ...|-+. ...|+.++-+||.++.++..+|+.+|...+.
T Consensus       103 l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~  161 (228)
T PF03976_consen  103 LVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPL  161 (228)
T ss_dssp             THHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcc
Confidence            1                   1112233 5678889999999999999999999987643

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=94.52  E-value=0.23  Score=57.45  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=26.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+.-++|.||+|+||||+|+.+++.+.
T Consensus        42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         42 TGRIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            455677899999999999999999999876

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=94.50  E-value=0.038  Score=54.57  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=28.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      -++..++.+.|+||||||+|+.+++...   +.....|+.+
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            4567899999999999999999987542   3334455554

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK09169 hypothetical protein; Validated

Probab=94.49  E-value=0.12  Score=66.19  Aligned_cols=95  Identities=11%  Similarity=-0.005  Sum_probs=63.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--------------cCCCCcHHHHHHHHHHHHHCCCcEEEecC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KGKSGTKVQCLTSASSALKKGKSVFLDRC   86 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--------------~~~~~~~~~~~~~~~~~L~~Gk~VIID~t   86 (611)
                      .-|+|+|++|+||||+++.+...++..+  ++.|...              .|  ..++.....+.+.++  ..+||..-
T Consensus      2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~F--iDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr--~~vVLSTG 2184 (2316)
T PRK09169       2111 QARRIEREVGPLLQALLQKLAGGLRVDK--PHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR--WEVVLPAE 2184 (2316)
T ss_pred             cccceeeCCCCCHhHHHHHHHHHhCCCc--cccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc--CCeEEeCC
Confidence            3589999999999999999999999666  5444331              12  223333355556554  56666653


Q ss_pred             CCCH---HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           87 NLER---EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        87 nl~~---~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+..   ..|..+   +..|+   +||+..+.+++.+|+.....
T Consensus      2185 GGav~~~enr~~L---~~~Gl---vV~L~an~~tl~~Rty~g~N 2222 (2316)
T PRK09169       2185 GFGAAVEQARQAL---GAKGL---RVMRINNGFAAPDTTYAGLN 2222 (2316)
T ss_pred             CCcccCHHHHHHH---HHCCE---EEEEECCHHHHHHHhccCCC
Confidence            3332   333333   55676   89999999999999865543

>cd01394 radB RadB

Probab=94.48  E-value=0.037  Score=55.06  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      -++..++.+.|+||||||||+.+++...   +.....++.
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~   55 (218)
T cd01394          16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT   55 (218)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence            3567899999999999999999988653   233444554

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.48  E-value=0.22  Score=57.91  Aligned_cols=28  Identities=18%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..+.-++|.|++|+||||+|+.+++.+.
T Consensus        36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~   63 (620)
T PRK14948         36 RIAPAYLFTGPRGTGKTSSARILAKSLN   63 (620)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhc
Confidence            3445689999999999999999999876

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=94.45  E-value=0.027  Score=62.00  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=22.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..=|++.|+||+||||||+++++-+.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHH
Confidence            44589999999999999999988554

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.44  E-value=0.039  Score=44.91  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+.+|+|++||||||+..++.--
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999987643

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.43  E-value=0.036  Score=52.10  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +|.++|+.+|||||+++.|...+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999987654

>PF13479 AAA_24: AAA domain

Probab=94.42  E-value=0.11  Score=52.15  Aligned_cols=22  Identities=41%  Similarity=0.809  Sum_probs=20.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHV   40 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L   40 (611)
                      .+.-++|.|+||+||||+|..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            4677999999999999999988

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.42  E-value=0.03  Score=60.16  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .....++|+||+||||||+.+.++-
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4456899999999999999999875

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=94.33  E-value=0.045  Score=58.61  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPW   48 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~   48 (611)
                      ...|+|+|+|||||||+++.|+..++..+
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            45799999999999999999999888655

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.29  E-value=0.12  Score=56.05  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+..+++.|+||+||||+++.+++.+
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345567899999999999999998765

>TIGR00763 lon ATP-dependent protease La

Probab=94.28  E-value=0.049  Score=64.90  Aligned_cols=35  Identities=26%  Similarity=0.563  Sum_probs=30.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      ++..++|+||||+||||+|+.+++.++..+.+++.
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~  380 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL  380 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence            33479999999999999999999999888877763

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=0.039  Score=63.70  Aligned_cols=37  Identities=24%  Similarity=0.499  Sum_probs=33.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      .-+..++-|+||||.|||++++.+++.+++.|++++.
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv  471 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV  471 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec
Confidence            4567899999999999999999999999999999984

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=94.27  E-value=0.55  Score=51.69  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=24.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+.-++|.||||+||||+|+.+++.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~   61 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQ   61 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            678899999999999999999998754

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=94.27  E-value=0.044  Score=52.25  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=26.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..-|+|+|+||+||||+|..+.++ +  +..++.|..
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g--~~lvaDD~v   47 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-G--HRLVADDRV   47 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-C--CeEEECCEE
Confidence            356899999999999999998876 3  444655544

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=94.25  E-value=0.24  Score=56.91  Aligned_cols=30  Identities=13%  Similarity=0.223  Sum_probs=26.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|+||+|+||||+|+.+++.+.
T Consensus        34 ~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~   63 (559)
T PRK05563         34 QGKISHAYLFSGPRGTGKTSAAKIFAKAVN   63 (559)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345678899999999999999999998865

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.24  E-value=0.44  Score=53.92  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+..++|.|++|+||||+|+.+++.++
T Consensus        34 ~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         34 LQRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345677899999999999999999999865

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=94.23  E-value=0.4  Score=52.36  Aligned_cols=104  Identities=18%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc---cC----------CCCcH-HHHHHHHHHHHHCCCc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN---KG----------KSGTK-VQCLTSASSALKKGKS   80 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~---~~----------~~~~~-~~~~~~~~~~L~~Gk~   80 (611)
                      .-+|+++|++||||||+.+.+.....     ...+.| .|-+.   .+          +.+.. ..+...++.+|+..-+
T Consensus       149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti-Edp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD  227 (372)
T TIGR02525       149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY-EDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPK  227 (372)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE-ecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCC
Confidence            34789999999999999999977652     112222 12111   00          11110 1233677888888888


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      +|+=+--...+....+++. ..-+.-+..+. --+......|+..-
T Consensus       228 ~I~vGEiRd~et~~~al~aa~TGH~v~tTlH-a~s~~~ai~Rl~~~  272 (372)
T TIGR02525       228 IIGVGEIRDLETFQAAVLAGQSGHFCLGTLH-VKSPGEAISRCLQM  272 (372)
T ss_pred             EEeeCCCCCHHHHHHHHHHHhcCCcEEEeeC-CCCHHHHHHHHHHh
Confidence            8777755555555544544 22222222333 23556678887653

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=94.22  E-value=0.39  Score=52.19  Aligned_cols=106  Identities=18%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC---C-C-eEEeecchhc---cCC-----------CCc-HHHHHHHHHHHHHCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---R-P-WARICQDTIN---KGK-----------SGT-KVQCLTSASSALKKG   78 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~-~-~~~Is~D~i~---~~~-----------~~~-~~~~~~~~~~~L~~G   78 (611)
                      +..+|+++||+||||||+.+.+.....   . . .+..-.|-+.   .+.           ... ...+...++.+|+..
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~  212 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK  212 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence            457999999999999999999987652   1 1 1111122221   010           000 012346677888888


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      -++|+=+--...+....+++. ..-+.-+..+. -.+......|+..-
T Consensus       213 Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlH-a~~~~~~i~Rl~~~  259 (358)
T TIGR02524       213 PHAILVGEARDAETISAALEAALTGHPVYTTLH-SSGVAETIRRLVGS  259 (358)
T ss_pred             CCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeec-cCCHHHHHHHHHHh
Confidence            887776644444444445444 22232222222 23556678887654

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.17  E-value=0.036  Score=53.00  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +|.++|++||||||++.++...+.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999988643

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=94.16  E-value=0.54  Score=49.81  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEee-cch--hc--c-CCC----CcHH-HHHHHHHHHHHCCCcEEEec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-QDT--IN--K-GKS----GTKV-QCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is-~D~--i~--~-~~~----~~~~-~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ...|+++|++||||||+++.+......   ....+. .|.  +.  . ...    .... ...+.+..+|+.+-+.|+=+
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG  211 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG  211 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence            357889999999999999999876531   111222 111  11  0 000    0001 23467778888887766655


Q ss_pred             CCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           86 CNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        86 tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      --...+. ..+++.  ..+...+..+.-+ +......|+..-
T Consensus       212 EiR~~ea-~~~l~a~~tGh~G~~tTiHa~-~~~~ai~Rl~~l  251 (299)
T TIGR02782       212 EVRGGEA-LDLLKAWNTGHPGGIATIHAN-NAKAALDRLEQL  251 (299)
T ss_pred             ccCCHHH-HHHHHHHHcCCCCeEEeeccC-CHHHHHHHHHHH
Confidence            4444443 334443  2222234444443 444566777544

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR00436 era GTP-binding protein Era

Probab=94.14  E-value=0.23  Score=51.41  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .|+|+|.||+|||||.+++...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~   23 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ   23 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=94.14  E-value=0.032  Score=55.65  Aligned_cols=22  Identities=36%  Similarity=0.813  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      |++.|+|||||||++++++...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5889999999999999999873

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=94.13  E-value=0.049  Score=59.19  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=26.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP   47 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~   47 (611)
                      ..|.+|.++|++||||||+++++...+...
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~   32 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER   32 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence            457899999999999999999999887633

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=94.12  E-value=0.082  Score=55.37  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=44.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~   95 (611)
                      .=-++|.||||-||||+|.-++.+.+..+...+...+      .+.-=+..+...|..|....||-.+.-.....+
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l------eK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE  121 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEE  121 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc------cChhhHHHHHhcCCcCCeEEEehhhhcChhHHH
Confidence            3468999999999999999999999855443333332      111112344455677777777775533333333

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.052  Score=57.55  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .-|+|+||+|||||-+|+-|++.++.||..-+.-.+
T Consensus        98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL  133 (408)
T COG1219          98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL  133 (408)
T ss_pred             ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence            469999999999999999999999988865554444

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.08  E-value=0.042  Score=53.68  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=22.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...++.|+||+||||||+.+.++..
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~~   44 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLYA   44 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            45678999999999999999988643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.07  E-value=0.3  Score=51.09  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=28.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i   56 (611)
                      ++..++|+|++|+||||+++.++..+.   .....++.|..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~  114 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  114 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            457999999999999999999876642   23445666654

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.07  E-value=0.055  Score=55.79  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEee-cch--hc-cCCC-------CcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC-QDT--IN-KGKS-------GTKVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is-~D~--i~-~~~~-------~~~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ..+|+++|++||||||+.+.++...+.. ...+. .|.  +. .+..       .......+.+..+|+.+-++|+=+--
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi  206 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI  206 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence            6789999999999999999999877644 32222 121  11 1100       01112346677788887776555533


Q ss_pred             CCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           88 LEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        88 l~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      ...+.-.- ++.  ..+...+..+.-+ +......|+..=.
T Consensus       207 R~~e~~~~-~~a~~tGh~~~~tT~Ha~-s~~~~i~Rl~~l~  245 (270)
T PF00437_consen  207 RDPEAAEA-IQAANTGHLGSLTTLHAN-SAEDAIERLADLG  245 (270)
T ss_dssp             -SCHHHHH-HHHHHTT-EEEEEEEE-S-SHHHHHHHHHHHC
T ss_pred             CCHhHHHH-HHhhccCCceeeeeeecC-CHHHHHHHHHHHh
Confidence            33332222 333  2222223444433 5566777876543

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.05  E-value=0.042  Score=54.39  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++..+
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.05  E-value=0.042  Score=54.58  Aligned_cols=27  Identities=37%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++...
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            356789999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK05973 replicative DNA helicase; Provisional

Probab=94.04  E-value=0.068  Score=54.78  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=26.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      ++..++++.|.||+|||+|+.+++...   +.....++.
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl  100 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL  100 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            456799999999999999999876532   444444553

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.04  E-value=0.045  Score=54.13  Aligned_cols=27  Identities=37%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+|++||||||+++.++...
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=94.03  E-value=0.043  Score=52.97  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +..++|+|++|+|||||.+.|....
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3789999999999999999998753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=94.03  E-value=0.042  Score=53.91  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +.++.||||+||||++..+....
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            78999999999999888877664

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.03  E-value=0.044  Score=53.42  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++...
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            355689999999999999999987643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=94.02  E-value=0.074  Score=56.05  Aligned_cols=38  Identities=34%  Similarity=0.492  Sum_probs=28.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D   54 (611)
                      .....+|.|+|+||||||||.+++...+..  ...+|..|
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD  140 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD  140 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence            345678999999999999999999887542  34445433

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.02  E-value=0.042  Score=54.57  Aligned_cols=27  Identities=37%  Similarity=0.567  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+|++||||||+.+.++...
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.01  E-value=0.039  Score=62.99  Aligned_cols=29  Identities=24%  Similarity=0.429  Sum_probs=24.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..+..+++|+||||+|||||++.|++.+.
T Consensus       100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        100 EEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            44567999999999999999999987654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.98  E-value=0.046  Score=54.39  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++|||||||.+.++...
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            456799999999999999999887543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.089  Score=61.30  Aligned_cols=115  Identities=15%  Similarity=0.178  Sum_probs=68.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF   96 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~   96 (611)
                      -.+..=|+|-||||+|||-+|++++-++...|..|-..++-+...+..++....+.+..++...                
T Consensus       702 lrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~P----------------  765 (953)
T KOG0736|consen  702 LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAP----------------  765 (953)
T ss_pred             ccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCC----------------
Confidence            3446789999999999999999999998866655655555555555555444444433333332                


Q ss_pred             HHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244           97 VKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus        97 ~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                                .+||||==...    .-+|++.  +.++.+.+.++.++++.+.-..-. .-++|+++-
T Consensus       766 ----------CVIFFDELDSl----AP~RG~s--GDSGGVMDRVVSQLLAELDgls~~-~s~~VFViG  816 (953)
T KOG0736|consen  766 ----------CVIFFDELDSL----APNRGRS--GDSGGVMDRVVSQLLAELDGLSDS-SSQDVFVIG  816 (953)
T ss_pred             ----------eEEEecccccc----CccCCCC--CCccccHHHHHHHHHHHhhcccCC-CCCceEEEe
Confidence                      25555521111    1234331  134578888888888876444422 224566664

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.96  E-value=0.044  Score=54.27  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+++.++...
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455789999999999999999987643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.94  E-value=0.044  Score=49.38  Aligned_cols=22  Identities=32%  Similarity=0.671  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      =|+|+|.+|||||||.+++...
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999998764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=93.92  E-value=0.086  Score=52.78  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      -+...++.+.|+||+|||+||.+++...   +.....++.+
T Consensus        20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            3557899999999999999999987632   3344555554

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=93.92  E-value=0.059  Score=60.73  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHH----HHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEe
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHV----MRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L----~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID   84 (611)
                      ++..++++.|+|||||||||.++    +++.+.....|+.+.-.++.......+--.+......|...++|
T Consensus        19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~   89 (484)
T TIGR02655        19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILD   89 (484)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEe

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd00154 Rab Rab family

Probab=93.91  E-value=0.045  Score=49.78  Aligned_cols=21  Identities=19%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+++|+|||||||+.+++...
T Consensus         3 i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.90  E-value=0.048  Score=53.94  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+|++||||||+.+.++...
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.89  E-value=0.048  Score=53.95  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++|||||||.+.++...
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998643

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.89  E-value=0.046  Score=53.91  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++...
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456799999999999999999997643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	611
3zvn_A	416	The Structural Basis For Substrate Recognition By M		3e-06
3zvl_A	416	The Structural Basis For Substrate Recognition By M		3e-06
3u7e_B	381	Crystal Structure Of Mpnkp Catalytic Fragment (D170		5e-06
3zvm_A	416	The Structural Basis For Substrate Recognition By M		6e-06
1yj5_A	383	Molecular Architecture Of Mammalian Polynucleotide		8e-06
3u7g_A	379	Crystal Structure Of Mpnkp Catalytic Fragment (D170		9e-06
4gp6_A	171	Polynucleotide Kinase Length = 171		5e-04
1spv_A	184	Crystal Structure Of The Putative Phosphatase Of Es		9e-04

>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Length = 381

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 225 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 277
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 278 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREXTDPSHAPVSDXV 336
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 337 XFSYRKQFEPPTLAEGFLEI 356

>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase, A Dna Repair Enzyme Length = 383

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 227 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 279
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 280 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 338
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 339 XFSYRKQFEPPTLAEGFLEI 358

>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Bound To Single- Stranded Dna (Tcctap) Length = 379

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 223 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 275
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 276 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 334
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 335 XFSYRKQFEPPTLAEGFLEI 354

>pdb|4GP6|A Chain A, Polynucleotide Kinase Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTS-ASSAL 75
           LV+++G+ GSGKSTF +   + +    +  C+     D  ++  +G     L    S  L
Sbjct: 11  LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRL 70
Query: 76  KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH----AVVLDLPAKLCISRSVKRIEHE 129
           + GK   +D  N++   R   +++     D H    AVV +LP K+C  R+  R + +
Sbjct: 71  QLGKLTVVDATNVQESARKPLIEIAK---DYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125

>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERAKSLYPG 407
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A     + +   P 
Sbjct: 10  GDITKL------AVDVIVNAANPSLX-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62
Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGP 435
              ++ L    P         V+H +GP
Sbjct: 63  GHAVITLAGDLP------AKAVVHTVGP 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	611
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	1e-22
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	8e-21
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	9e-19
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	7e-17
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	4e-16
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	5e-16
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	7e-16
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	1e-15
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	1e-15
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	3e-15
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	1e-13
1spv_A	184	Putative polyprotein/phosphatase; structural genom	1e-13
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	2e-13
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	3e-13
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	3e-13
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	3e-13
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	1e-12
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	2e-12
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	4e-12
2x47_A	235	Macro domain-containing protein 1; signaling prote	7e-12
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	8e-10
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-07
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	1e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	2e-05
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	8e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	1e-04

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score = 99.6 bits (247), Expect = 1e-22
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78
              +V+ VG PG+GKSTF +  + S    +  + +DT+     G+  +C++S  +AL++G
Sbjct: 257 NPEVVVAVGFPGAGKSTFIQEHLVS--AGYVHVNRDTL-----GSWQRCVSSCQAALRQG 309

Query: 79  KSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA 137
           K V +D  N +   R  +++      V           +     +  R E         +
Sbjct: 310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR-EMTDPSHAPVS 368

Query: 138 AAVVNRMLQKKELPKLSEGFSRITLC 163
             V+    ++ E P L+EGF  I   
Sbjct: 369 DMVMFSYRKQFEPPTLAEGFLEILEI 394

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 89.5 bits (222), Expect = 8e-21
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 27/156 (17%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------- 65
           +++ +G PGSGKST+    +  +   +  I +D   +     +                 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62

Query: 66  ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLCISR 121
                  S        K V +   NL  E+R  +          V   V D+P    + R
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 122 SVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF 157
           + KR              V+  M +          +
Sbjct: 123 NSKRGTKAVP------IDVLRSMYKSMREYLGLPVY 152

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176

 Score = 83.1 bits (206), Expect = 9e-19
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 21/140 (15%)

Query: 335 AAQKHINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPA 392
           A  +     ++ T VGD+T +            I NAAN  +   G GV  AI    G  
Sbjct: 6   ATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLD 64

Query: 393 LEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKG 452
                 +  K   P   ++     T      +G+  V +V+GP       +         
Sbjct: 65  FVEYCEDYVKKHGPQQRLV-----TPS--FVKGIQCVNNVVGPRHGDNNLH--------- 108

Query: 453 CEILRKAYT-SLFEGFLSIV 471
            E L  AY   L +G ++ V
Sbjct: 109 -EKLVAAYKNVLVDGVVNYV 127

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 80.5 bits (198), Expect = 7e-17
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTK----------------- 64
           +++ +G PGSGKST+    +  +   +  I +D   +     +                 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62

Query: 65  --VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLCISR 121
                  S        K V +   NL  E+R  +          V   V D+P    + R
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 122 SVKRIEH 128
           + KR   
Sbjct: 123 NSKRGTK 129

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 29/194 (14%)

Query: 22  LVIMVGAPGSGKSTFC---EHVMRSSARPWARICQDTINKGKSGTK-------VQCLTSA 71
           L+I+ G PG GKSTF      ++  +      +  D I +     K        +     
Sbjct: 6   LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130
             +  K   V +D  N     R D + +      +   + L     + I R+++R E   
Sbjct: 66  IDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP 125

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITL------CQNENDVQAALDTYSGLGPLDT 184
           N        V+ +M +K + P     +    L        + N++   L     +     
Sbjct: 126 N-------EVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKL-----IEKSKE 173

Query: 185 LPHGSFGQKNPDAK 198
           +P     ++N +  
Sbjct: 174 IPKFYVLEENKNKN 187

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193

 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 27/153 (17%)

Query: 322 TQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGV 381
           T  +       A+     +       + GD+  +  G  +  + I NAAN  L   GGG+
Sbjct: 17  TTENLYFQGAMAEKLNAFLVHDNVAFYQGDVDTVVNG--VDFDFIVNAANENLA-HGGGL 73

Query: 382 NAAIFSAAGPALEVATAERAK---SLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMN 438
             A+       L+  + E       +  G  V+V                + +V+GP   
Sbjct: 74  AKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVEC----------DSLRIFNVVGPRKG 123

Query: 439 PRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIV 471
                          ++L KAY ++     + +
Sbjct: 124 KHER-----------DLLIKAYNTINNEQGTPL 145

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168

 Score = 74.6 bits (184), Expect = 7e-16
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 30/123 (24%)

Query: 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE 399
           +    +    GDI            VI NAAN + +  GGGV  A++     + ++   E
Sbjct: 1   MKAPSYHVVRGDIATA------TEGVIINAANSKGQ-PGGGVCGALYKKFPESFDLQPIE 53

Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
                  G + +V   +           H+IH +GPN N           V+G + L +A
Sbjct: 54  ------VGKARLVKGAA----------KHIIHAVGPNFN-------KVSEVEGDKQLAEA 90

Query: 460 YTS 462
           Y S
Sbjct: 91  YES 93

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 27/132 (20%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           K    ++GDI+ L        + + NAAN  L   GGGV  AI       L+  + +   
Sbjct: 17  KNVKFYLGDISHLVNCVS--FDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYIS 73

Query: 403 S---LYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
           S   L  G  V++               +V +V+GP                   +L +A
Sbjct: 74  SNGPLKVGAGVMLE----------CEKFNVFNVVGPRTGKHEH-----------SLLVEA 112

Query: 460 YTSLFEGFLSIV 471
           Y S+       +
Sbjct: 113 YNSILFENGIPL 124

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 29/128 (22%)

Query: 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL--EVAT 397
               +       +    T      +V+ N+    L    G ++ ++   AGP L  E+ T
Sbjct: 36  PGGLQMLLVKEGVQNAKT------DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDT 89

Query: 398 AERAKSLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCE 454
             +  ++  G  +      L             +V+HV+ P       +          +
Sbjct: 90  VGQGVAVSMGTVLKTSSWNLDC----------RYVLHVVAPEWRNGSTSS--------LK 131

Query: 455 ILRKAYTS 462
           I+      
Sbjct: 132 IMEDIIRE 139

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 33/139 (23%)

Query: 336 AQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEV 395
            +  +         GDIT+           I NAAN RL+  GGGV  AI  A      +
Sbjct: 14  FEAKVGDITLKLAQGDITQY------PAKAIVNAANKRLE-HGGGVAYAIAKACAGDAGL 66

Query: 396 ATAERAKSLY---------PGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPN 443
            T    K++           G  V+ P   L          G+ +V H +GP  +     
Sbjct: 67  YTEISKKAMREQFGRDYIDHGEVVVTPAMNLEE-------RGIKYVFHTVGPICS----- 114

Query: 444 CLDGDYVKGCEILRKAYTS 462
                  +  E L KA+  
Sbjct: 115 --GMWSEELKEKLYKAFLG 131

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
            K   + GD+  L     L  +V+ NAAN  L+   GGV  AI    G  L   + E  K
Sbjct: 10  GKVSFYQGDLDVLINF--LEPDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLK 66

Query: 403 SLYP---GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
           S      GN+V+                 V++ +GP     R              L   
Sbjct: 67  SSKAIAPGNAVLFE--------NVLEHLSVMNAVGPRNGDSRVE----------GKLCNV 108

Query: 460 YTSLFEGFLSIV 471
           Y ++ +    I+
Sbjct: 109 YKAIAKCDGKIL 120

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 31/119 (26%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY---P 406
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A  +  +       
Sbjct: 10  GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           G++VI     LP+            V+H +GP       N          ++L+ AY +
Sbjct: 63  GHAVITLAGDLPA----------KAVVHTVGPVWRGGEQNE--------DQLLQDAYLN 103

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 28/118 (23%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP--- 406
            DI +          VI NAAN  LK  GGGV  A+  A   A++  + +  K   P   
Sbjct: 27  VDIVKEAQSAN--PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 83

Query: 407 GNSVIVPLPSTSP--LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           G S +      S   L         +HV+GPN+N               ++L+ AY +
Sbjct: 84  GGSCL-----LSGHNLA-----KKCLHVVGPNLN--AGED--------IQLLKAAYEN 121

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 36/116 (31%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
            DI +           + NAAN R    G GV  A++     + + +          G +
Sbjct: 17  MDIAKN------DEECVVNAANPRGL-PGDGVCKAVYKKWPESFKNSATP------VGTA 63

Query: 410 VIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
             V     P             VIH +GPN +       +    +G   L  AY  
Sbjct: 64  KTVMCGTYP-------------VIHAVGPNFS-------NYSESEGDRELAAAYRE 99

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 30/119 (25%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE---RAKSLYP 406
           GD+ RL        +V+ NA+N  LK   GG+ AA+  AAGP L+    +   R   L P
Sbjct: 44  GDLARL------PVDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLP 96

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           GN+ I     LP            HVIH +GP  +         +  +   +LR+A   
Sbjct: 97  GNATISKAGKLPY----------HHVIHAVGPRWS-------GYEAPRCVYLLRRAVQL 138

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 32/123 (26%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
            +     GDIT          + I NAAN  LK  G GV  AI    GP+++       K
Sbjct: 2   ARIRVVQGDITEF------QGDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRIGK 54

Query: 403 SLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
            +  G + +     LP            +VIH       P              E +RKA
Sbjct: 55  -IRVGEAAVTGAGNLPV----------RYVIHAAVLGDEPASL-----------ETVRKA 92

Query: 460 YTS 462
             S
Sbjct: 93  TKS 95

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 30/119 (25%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP--- 406
            DI+ + +   +    I +     +      +  A+  A G        E  KS  P   
Sbjct: 26  SDISHIGS---MRVEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEV 81

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
             + +     L +            VIH   P     +            E L +   +
Sbjct: 82  AEAAVSQSSGLAA----------KFVIHCHIPQWGSDKCE----------EQLEETIKN 120

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 33/126 (26%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           +K      DI  +        + + +  N      GG V + +    G     A  E  K
Sbjct: 19  QKLQVVQADIASI------DSDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRK 71

Query: 403 SLYP---GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEIL 456
              P     + +     LP+            VIH   P     +            E+L
Sbjct: 72  KNGPLEVAGAAVSAGHGLPA----------KFVIHCNSPVWGSDKC----------EELL 111

Query: 457 RKAYTS 462
            K   +
Sbjct: 112 EKTVKN 117

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGG 379
           ++ +G  +          K +N +K      DIT+L        + I NAAN  L  GGG
Sbjct: 40  EMAKGVAVKVEEPRYKKDKQLN-EKISLLRSDITKL------EVDAIVNAANSSLL-GGG 91

Query: 380 GVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPN 436
           GV+  I  AAGP L             G + I     LP+           +VIH +GP 
Sbjct: 92  GVDGCIHRAAGPLLTDECRTLQS-CKTGKAKITGGYRLPA----------KYVIHTVGPI 140

Query: 437 MNPRRPNCLDGDYVKGC-EILRKAYTS 462
                     G+        LR  Y S
Sbjct: 141 AY--------GEPSASQAAELRSCYLS 159

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 57.6 bits (139), Expect = 8e-10
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 25/179 (13%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------------- 62
              L+I+ G P +GK+T  + +          + +D   +                    
Sbjct: 4   TPALIIVTGHPATGKTTLSQALAT--GLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT 61

Query: 63  TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR 121
             +    +A++ L+ G+S+ ++              L          +       + + R
Sbjct: 62  AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVER 121

Query: 122 SVKRIEHEGNLQGGKAA---AVVNRMLQKKELPKLSEGFSRITLCQ---NENDVQAALD 174
            + RI       G       A +  +  + ++P L  G   +T+      + D+ A + 
Sbjct: 122 ILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQ 180

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 13/177 (7%)

Query: 309 NKLGNARLVLVDLTQG------SKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLC 362
           N +   R++L D  +         I            I+     + +  + +        
Sbjct: 12  NGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGH 71

Query: 363 CNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAERAKSLYPGNSVIVP---LPS 416
              I +  N      GGG + A+++  G              +    G++ +V       
Sbjct: 72  SYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLE 130

Query: 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS 473
              +  R+G+ ++IHV                   G E +  A  +        +  
Sbjct: 131 EKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDG 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 97/655 (14%), Positives = 172/655 (26%), Gaps = 196/655 (29%)

Query: 2   DTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57
             +ID    +KD      ++   ++         F E V+R +      P     +    
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 58  KGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL 117
             +              L     VF    N+ R Q                  L L   L
Sbjct: 108 MTRM------YIEQRDRLYNDNQVFAKY-NVSRLQP----------------YLKLRQAL 144

Query: 118 CISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYS 177
              R  K +             +++ +L          G  +  +         ALD   
Sbjct: 145 LELRPAKNV-------------LIDGVL----------GSGKTWV---------ALDVCL 172

Query: 178 GLGPLDTLPHG----SFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITE 233
                  +       +    N    +   + K L ++D    + S  SS        I  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 234 EKNSCLEGQE-ITSL--LSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQ 290
           E    L+ +     L  L +     V+   N +  +            L    L+T   Q
Sbjct: 233 ELRRLLKSKPYENCLLVLLN-----VQ---NAKAWNAFNLSC----KIL----LTTRFKQ 276

Query: 291 FNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQG---SKILSLVRAKAAQKHINPKKFFT 347
                        V +F++      + L   +      ++ SL+  K       P+    
Sbjct: 277 -------------VTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYL--DCRPQ---- 316

Query: 348 FVGDITRLYTGGG-LCCNVIA-----NAA---NWRLKPGGGGVNAAIFSAAGPALEVATA 398
              D+ R          ++IA       A   NW+       +   I S    +L V   
Sbjct: 317 ---DLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIES----SLNVLEP 368

Query: 399 ERAKSLYPGNSVI---VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEI 455
              + ++   SV      +P           T ++ ++  ++            V     
Sbjct: 369 AEYRKMFDRLSVFPPSAHIP-----------TILLSLIWFDVIKSDV----MVVVNKLH- 412

Query: 456 LRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYI---------ST 506
            +    SL E      +  ++ +      I LE  V  ++   +H + +          +
Sbjct: 413 -KY---SLVE------KQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 507 GDKIK--RDG------GH---EYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSK 555
            D I    D       GH     E  ++      V  D              KI    S 
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--------KI-RHDST 512

Query: 556 AW---GSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKMYEMNICKFYKRC 607
           AW   GS    L +   Y + +      I D     ND   +     I  F  + 
Sbjct: 513 AWNASGSILNTLQQLKFY-KPY------ICD-----NDPKYERLVNAILDFLPKI 555

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 20/124 (16%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----INKGKSGTKVQ----------- 66
           ++++ G PGSGKST  E +      P      D     I  G+    +            
Sbjct: 11  ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 70

Query: 67  -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125
                A    K+G  V LD   +  +    F  L  P   +H +VL   A   I R + R
Sbjct: 71  IAADVAGRYAKEGYFVILDG-VVRPDWLPAFTALARP---LHYIVLRTTAAEAIERCLDR 126

Query: 126 IEHE 129
               
Sbjct: 127 GGDS 130

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 559 SWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPK 594
           S+   L      PE +K+ ++   DDVV++ D++PK
Sbjct: 5   SFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPK 39

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTI--NKGKSGTKV--- 65
           K++ +I  G  G GKST C+ +                  +        +      +   
Sbjct: 2   KKLYIIT-GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWK 60

Query: 66  QCLTSASSALKKGKSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123
                  + L     V LD      E       V+    +V++  ++L    +  + R  
Sbjct: 61  NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 124 KRIEHEG 130
            R + E 
Sbjct: 121 LRKKDEQ 127

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 28/179 (15%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKVQCLT 69
           + I +++ G  G+GK+T      +        I  D+             + G      T
Sbjct: 31  QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYT 90

Query: 70  SASS----------ALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLC 118
              +              G ++ ++      +      +L   +  +V   ++    +L 
Sbjct: 91  KDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS 150

Query: 119 ISRSVKRIEHEGNLQGGKAA--------AVVNRMLQKKELPKLSEGFSRITLCQNENDV 169
              ++ R E    +   +A          +VN ++      +    F RI + Q +   
Sbjct: 151 YLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQRDRSC 209

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 25/129 (19%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----------NKGKSGTKVQCL-- 68
           ++I+ G   +GKS     +      PW     D++             G        +  
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 69  ------------TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAK 116
                           +  + G  + +D   L      +  +    ++DV  V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 117 LCISRSVKR 125
           +   R   R
Sbjct: 125 VAEGRETAR 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	611
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	99.94
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.94
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.93
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.93
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	99.93
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.93
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.92
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.92
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	99.91
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	99.9
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.9
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	99.89
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	99.89
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	99.89
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	99.89
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	99.89
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	99.89
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	99.86
4gua_A	670	Non-structural polyprotein; viral precursor polypr	99.84
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.71
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	99.68
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	99.68
2fg1_A	158	Conserved hypothetical protein BT1257; structural	99.64
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.64
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.52
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.51
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.46
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.44
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.42
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.4
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.39
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.36
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.35
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.35
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.31
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.31
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.3
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.29
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.29
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.27
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.27
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.27
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.25
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.25
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.24
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.23
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.22
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.21
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.21
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.2
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.18
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.16
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.16
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.13
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.07
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.06
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.05
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.02
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.02
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.02
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.01
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.99
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.99
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.99
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	98.98
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.96
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.94
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.94
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	98.94
2x47_A	235	Macro domain-containing protein 1; signaling prote	98.92
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.89
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.88
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	98.87
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.86
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.86
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.86
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.85
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.8
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.79
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.79
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.79
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.79
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.78
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.78
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.78
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.75
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.72
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.72
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.7
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.7
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	98.7
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	98.69
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.68
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.68
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	98.67
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.66
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.66
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.64
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	98.63
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.62
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.61
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.61
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.6
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	98.6
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	98.58
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.58
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	98.58
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.57
1via_A	175	Shikimate kinase; structural genomics, transferase	98.57
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	98.56
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.56
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.55
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.55
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.53
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.53
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.48
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.47
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.47
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.47
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.46
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.46
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.45
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.42
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.38
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.37
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.36
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.36
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.35
4gua_A	670	Non-structural polyprotein; viral precursor polypr	98.34
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.3
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.3
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.3
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.3
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.25
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.25
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	98.24
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.22
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.2
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.17
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.14
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.11
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.08
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.08
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.08
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.04
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.02
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.02
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.94
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.93
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.9
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.86
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.84
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	97.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.75
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.73
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.72
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.66
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	97.66
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.65
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	97.64
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.59
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.56
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.55
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.55
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.53
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.5
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.5
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.5
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.49
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.48
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.48
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.41
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.21
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.2
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.17
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.17
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.15
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.14
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.96
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.95
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.95
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.9
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.89
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.88
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.85
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.84
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.83
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.78
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.78
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.73
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.69
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.63
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.62
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.59
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.58
2fg1_A	158	Conserved hypothetical protein BT1257; structural	96.56
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.56
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.52
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.51
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	96.49
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.48
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.46
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.43
3bos_A	242	Putative DNA replication factor; P-loop containing	96.42
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.36
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.33
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.33
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.32
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	96.3
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.28
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.23
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.23
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.17
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.17
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.13
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.13
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.13
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.08
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.05
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.04
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.99
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.98
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	95.93
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.93
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.92
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.91
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.88
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.84
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.84
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.83
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.83
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.82
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.82
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.78
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.76
3pvs_A	447	Replication-associated recombination protein A; ma	95.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.68
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.64
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.6
3co5_A	143	Putative two-component system transcriptional RES	95.6
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.58
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.54
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.52
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.49
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.47
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.46
2xxa_A	433	Signal recognition particle protein; protein trans	95.45
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.45
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.38
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	95.32
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.25
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.24
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.17
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.15
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.14
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.12
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.1
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.09
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.05
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.01
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.0
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.0
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.98
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.93
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	94.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.9
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.81
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.8
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.8
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	94.78
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.73
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.68
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.66
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	94.63
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.54
2og2_A	359	Putative signal recognition particle receptor; nuc	94.5
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.49
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.44
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.42
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.39
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.35
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.31
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.3
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.3
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.28
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.22
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.18
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.18
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.17
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.17
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.17
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.14
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.08
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.07
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.06
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.98
2fna_A	357	Conserved hypothetical protein; structural genomic	93.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.93
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.92
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.91
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.9
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.9
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.86
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.75
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.74
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.73
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.72
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.71
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.71
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.7
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.7
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.69
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.69
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.65
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.63
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	93.59
1g6h_A	257	High-affinity branched-chain amino acid transport	93.57
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.56
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.54
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.47
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.43
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.41
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.41
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	93.4
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.39
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	93.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.38
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.38
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.37
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.35
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.31
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.28
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.26
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.19
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.17
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.15
2z43_A	324	DNA repair and recombination protein RADA; archaea	93.15
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.14
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.11
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.1
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.1
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.09
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.06
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.04
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.0
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.98
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	92.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.93
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.93
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.93
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.89
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.88
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.82
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	92.77
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.76
2qgz_A	308	Helicase loader, putative primosome component; str	92.75
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.74
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	92.74
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.73
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.73
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.67
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	92.64
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.63
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.58
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.58
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	92.58
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.57
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.57
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.56
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.54
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	92.54
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.51
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	92.5
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.47
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.43
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.41
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	92.39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.39
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	92.38
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.38
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.34
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	92.33
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.33
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.3
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.23
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	92.23
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.22
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	92.21
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	92.19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.18
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	92.17
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.17
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.14
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	92.14
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.91
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	91.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	91.9
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.9
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.89
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.88
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.87
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.87
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	91.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.84
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	91.81
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.78
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.76
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.76
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.75
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	91.7
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.68
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.67
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.59
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.56
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.55
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.54
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.51
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.5
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.48
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.48
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.46
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.42
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.42
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	91.39
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.39
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.32
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.32
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.3
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.29
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.28
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.28
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.26
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.21
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.19
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.18
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.13
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.11
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	91.1
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.02
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.99
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	90.93
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.93
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	90.92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.86
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.84
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.81
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.74
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.73
2fh5_B	214	SR-beta, signal recognition particle receptor beta	90.71
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.67
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	90.66
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	90.61
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.58
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	90.57
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	90.57
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.53
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.48
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.4
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.24
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.18
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	90.15
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.13

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=99.94  E-value=1.6e-27  Score=228.01  Aligned_cols=110  Identities=26%  Similarity=0.282  Sum_probs=99.4

Q ss_pred             eEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 007244          343 KKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (611)
Q Consensus       343 ~~v~i~~GDIt~----~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~  415 (611)
                      .+|.+++||||+    +.      +||||||||+.|. +||||++||+++|||+|++||+++.   +++++|++++|+  
T Consensus        10 ~~i~l~~GDIt~~~~~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--   80 (168)
T 3eti_A           10 GKVSFYQGDLDVLINFLE------PDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFE--   80 (168)
T ss_dssp             TTEEEEESCHHHHHHHHC------CSEEEEEECTTCC-CCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEE--
T ss_pred             CeEEEEeCcccccCCCCC------CCEEEeCCCcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEec--
Confidence            468999999999    66      9999999999999 8999999999999999999999873   789999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCC
Q 007244          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL  477 (611)
Q Consensus       416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~  477 (611)
                          +|  ++++||||+|||.|+..          ...++|++||+++|+.+.|||||+||-
T Consensus        81 ----g~--l~~~~VIHtVgP~~~~~----------~~~~~L~~~y~~~L~~~~SIAfP~Ist  126 (168)
T 3eti_A           81 ----NV--LEHLSVMNAVGPRNGDS----------RVEGKLCNVYKAIAKCDGKILTPLISV  126 (168)
T ss_dssp             ----EE--ETTEEEEEEECCCTTST----------THHHHHHHHHHHHHTSCSCEEECCTTB
T ss_pred             ----CC--CCccEEEEecCCCCCcc----------hHHHHHHHHHHHHHHhcCceeeccccc
Confidence                34  67799999999999642          347899999999999989999999993

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=230.90  Aligned_cols=120  Identities=14%  Similarity=0.149  Sum_probs=106.3

Q ss_pred             hhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCCEEEecCC
Q 007244          338 KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLP  415 (611)
Q Consensus       338 ~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~--~~~~~G~~v~T~l~  415 (611)
                      .+.++.+|.|++||||++.      +||||||||..|.+++|||++||+++||++|++||+++.  +.+++|++++|+  
T Consensus        34 ~t~~g~~I~i~~GDIt~~~------vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~--  105 (221)
T 3q71_A           34 VSPGGLQMLLVKEGVQNAK------TDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTS--  105 (221)
T ss_dssp             ECTTCCEEEEEESCGGGCC------SSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEE--
T ss_pred             eecCCcEEEEEeCcccCCc------CCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEc--
Confidence            5778999999999999997      999999999999657899999999999999999999974  479999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS  478 (611)
Q Consensus       416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~  478 (611)
                          +| +|+|+||||+|||.|+...        ....++|++||++||++|.     |||||+||-+
T Consensus       106 ----g~-~Lp~k~VIHtVgP~~~~~~--------~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG  160 (221)
T 3q71_A          106 ----SW-NLDCRYVLHVVAPEWRNGS--------TSSLKIMEDIIRECMEITESLSLKSIAFPAIGTG  160 (221)
T ss_dssp             ----CT-TSSSSEEEEECCCCCTTTC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSS
T ss_pred             ----CC-CCCCCEEEEeCCCCCcCCC--------chHHHHHHHHHHHHHHHHHHhCCceEeeccccCC
Confidence                33 4789999999999998652        2356899999999999874     9999999933

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.93  E-value=2.7e-26  Score=227.63  Aligned_cols=119  Identities=29%  Similarity=0.334  Sum_probs=105.2

Q ss_pred             hcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 007244          339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (611)
Q Consensus       339 ~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~  415 (611)
                      ..++.+|.|++||||++.      +||||||||+.|. ++|||++||+++|||+|++||+++.   +.+++|++++|+  
T Consensus        33 ~~~g~~I~v~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--  103 (214)
T 3q6z_A           33 LAPGVVLIVQQGDLARLP------VDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISK--  103 (214)
T ss_dssp             EETTEEEEEEECCTTSCS------SSEEEEEECTTCC-CCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEE--
T ss_pred             cCCCcEEEEEecccccCc------CCEEEeCCCCCCC-CCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEc--
Confidence            457899999999999997      9999999999999 8999999999999999999999874   789999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                          ++ +|+|+||||+|||.|+....       ....++|++||++||++|     .|||||+||-+
T Consensus       104 ----~~-~L~~k~VIH~VgP~~~~~~~-------~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG  159 (214)
T 3q6z_A          104 ----AG-KLPYHHVIHAVGPRWSGYEA-------PRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSG  159 (214)
T ss_dssp             ----CT-TSSSSEEEEEECCCCCGGGH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred             ----CC-CCCCCEEEEecCCcccCCCc-------chHHHHHHHHHHHHHHHHHHcCCcEEEECcccCC
Confidence                33 48899999999999976421       234689999999999987     49999999933

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.93  E-value=1.2e-25  Score=218.50  Aligned_cols=115  Identities=33%  Similarity=0.419  Sum_probs=101.8

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTS  418 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~~~  418 (611)
                      +.+|.|++||||++.      +|||||+||..|. +||||++||+++|||+|+++|+++.   +.+++|++++|+     
T Consensus         2 ~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~-----   69 (184)
T 1spv_A            2 KTRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL-----   69 (184)
T ss_dssp             -CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC-----
T ss_pred             CCeEEEEeCcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEee-----
Confidence            357999999999997      9999999999999 8999999999999999999999873   789999999998     


Q ss_pred             CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244          419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS  478 (611)
Q Consensus       419 ~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~  478 (611)
                       + .+|+|++|||+|||.|+....        ...++|++||++||++|.     |||||+||-+
T Consensus        70 -~-~~L~~k~VIH~vgP~~~~~~~--------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG  124 (184)
T 1spv_A           70 -A-GDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAISTG  124 (184)
T ss_dssp             -C-TTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred             -C-CCCCCCEEEEEcCCcccCCCc--------chHHHHHHHHHHHHHHHHHhCCceEEeccccCC
Confidence             2 347889999999999976532        347899999999999874     9999999933

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=99.93  E-value=1.4e-25  Score=219.44  Aligned_cols=115  Identities=18%  Similarity=0.134  Sum_probs=102.4

Q ss_pred             cCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCC
Q 007244          340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPS  416 (611)
Q Consensus       340 ~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~l~~  416 (611)
                      ..+.+|.|++||||++.      +||||||||+.|. +||||++||+++|||+|+++|+++.   +++++|++++|+   
T Consensus        16 ~~~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~---   85 (193)
T 1yd9_A           16 FLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA---   85 (193)
T ss_dssp             TTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE---
T ss_pred             CCCCEEEEEeCccCcCc------CCEEEECCCccCC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec---
Confidence            34689999999999997      9999999999999 8999999999999999999999863   789999999998   


Q ss_pred             CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       417 ~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                         + .+|+|+||||+|||.|+..          ...++|++||++||++|     .|||||+||-+
T Consensus        86 ---~-~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG  138 (193)
T 1yd9_A           86 ---G-HGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIGSG  138 (193)
T ss_dssp             ---C-TTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBS
T ss_pred             ---C-CCCCCCEEEEeCCCCcCCc----------chHHHHHHHHHHHHHHHHHhCCceEeecccccC
Confidence               3 3478899999999999642          34789999999999987     49999999933

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=219.42  Aligned_cols=115  Identities=15%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             cCCeEEEEEEccccee---cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 007244          340 INPKKFFTFVGDITRL---YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP  413 (611)
Q Consensus       340 ~~~~~v~i~~GDIt~~---~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~  413 (611)
                      ..+.+|.|++||||++   .      +||||||||..|. +||||++||+++||++|+++|+++.   +++++|++++|+
T Consensus        16 ~~~~~i~i~~GDIt~~~~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~   88 (193)
T 2xd7_A           16 VLGQKLSLTQSDISHIGSMR------VEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ   88 (193)
T ss_dssp             TTSCEEEEEECCGGGGGGCC------CSEEEEEECTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred             CCCCEEEEEeCcccccCCCC------CCEEEECCCccCC-CccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence            3568999999999999   7      9999999999999 8999999999999999999999863   789999999998


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       414 l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                            + .+|+|+||||+|||.|+..          ...++|++||++||++|     .|||||+||-+
T Consensus        89 ------~-~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG  141 (193)
T 2xd7_A           89 ------S-SGLAAKFVIHCHIPQWGSD----------KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSG  141 (193)
T ss_dssp             ------C-TTSSSSEEEEEECCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCS
T ss_pred             ------C-CCCCCCEEEEECCCcCCCc----------chHHHHHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence                  2 3478899999999999642          34789999999999987     49999999933

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.92  E-value=2.2e-25  Score=216.16  Aligned_cols=111  Identities=23%  Similarity=0.255  Sum_probs=101.4

Q ss_pred             HhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEec
Q 007244          334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP  413 (611)
Q Consensus       334 ~~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~  413 (611)
                      ..+++++++.+|+|++||||++.      +||||||||+.|. +||||++||+++||++|++||+++ +++++|++++|+
T Consensus        13 ~~~~~~ig~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGV~~aI~~aaG~~l~~ec~~~-~~~~~G~a~iT~   84 (183)
T 4abl_A           13 GVYEMKIGSIIFQVASGDITKEE------ADVIVNSTSNSFN-LKAGVSKAILECAGQNVERECSQQ-AQQRKNDYIITG   84 (183)
T ss_dssp             TCEEEEETTEEEEEEESCGGGCB------CSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HHHSCCSEEEEE
T ss_pred             CceEEEECCEEEEEEeCcccCcc------cCEEEECCCCCCC-CCccHHHHHHHHhhHHHHHHHHHh-cCCCCCceEEec
Confidence            45778899999999999999997      9999999999999 899999999999999999999987 579999999998


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCC
Q 007244          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKL  477 (611)
Q Consensus       414 l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~  477 (611)
                            ++ +|+|+||||+|||.|                  |++||++||++|     .|||||+||-
T Consensus        85 ------~~-~L~~k~VIH~vgP~~------------------L~~~y~~~L~~a~~~~~~SIAfP~Ist  128 (183)
T 4abl_A           85 ------GG-FLRCKNIIHVIGGND------------------VKSSVSSVLQECEKKNYSSICLPAIGT  128 (183)
T ss_dssp             ------CT-TSBSSEEEEEETTSC------------------HHHHHHHHHHHHHHTTCCEEEECCTTS
T ss_pred             ------CC-CCCCCEEEEeCcHHH------------------HHHHHHHHHHHHHHcCCCeEeeccccC
Confidence                  33 478999999999963                  999999999987     4999999993

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.92  E-value=3e-25  Score=223.11  Aligned_cols=115  Identities=31%  Similarity=0.334  Sum_probs=101.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~  421 (611)
                      +.+|.|++||||++.      +||||||||..|. +||||++||+++||++|+++|+++ +++++|++++|+      + 
T Consensus        61 ~~~i~i~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-g~~~~G~a~iT~------~-  125 (235)
T 2x47_A           61 NEKISLLRSDITKLE------VDAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTL-QSCKTGKAKITG------G-  125 (235)
T ss_dssp             HTTEEEEESCGGGEE------SSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHTS-CCCCBTCEEEEE------C-
T ss_pred             CCEEEEEeCccCccc------CCEEEEecCcccC-CccHHHHHHHHHhCHHHHHHHHHh-CCCCCCceEEec------C-
Confidence            367999999999998      9999999999999 999999999999999999999876 789999999998      3 


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                      .+|+|+||||+|||.|+...       .....++|++||++||++|     .|||||+||-+
T Consensus       126 ~~L~~k~VIH~vgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG  180 (235)
T 2x47_A          126 YRLPAKYVIHTVGPIAYGEP-------SASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTG  180 (235)
T ss_dssp             TTSSSSEEEEEBCCCCTTCC-------CHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCS
T ss_pred             CCCCCCEEEEecCccccCCC-------CcchHHHHHHHHHHHHHHHHHhCCceEEeccccCC
Confidence            34789999999999997532       1245789999999999987     49999999933

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=99.91  E-value=5.1e-25  Score=214.45  Aligned_cols=108  Identities=23%  Similarity=0.288  Sum_probs=96.7

Q ss_pred             CeEEEEEEcccce----ecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecC
Q 007244          342 PKKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL  414 (611)
Q Consensus       342 ~~~v~i~~GDIt~----~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l  414 (611)
                      +.+|.+++||||+    +.      +||||||||+.|. +||||++||+++||++|++||+++   .+++++|++++|+ 
T Consensus        37 ~~~i~l~~GDIt~~~~~~~------vDAIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~-  108 (193)
T 3ejg_A           37 HDNVAFYQGDVDTVVNGVD------FDFIVNAANENLA-HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE-  108 (193)
T ss_dssp             ETTEEEEECCHHHHHHHCC------CSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-
T ss_pred             CCeEEEEeCcccccCcCCC------cCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec-
Confidence            4679999999999    65      9999999999999 899999999999999999999986   3789999999998 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCC
Q 007244          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL  477 (611)
Q Consensus       415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~  477 (611)
                           +++ |   +|||+|||.|+.           ...++|++||++||+.+.|||||+||-
T Consensus       109 -----~~~-L---~VIHtVGP~~~~-----------~~~~~L~~~y~~~L~~~~SIAfPaIst  151 (193)
T 3ejg_A          109 -----CDS-L---RIFNVVGPRKGK-----------HERDLLIKAYNTINNEQGTPLTPILSC  151 (193)
T ss_dssp             -----ETT-E---EEEEEECCCSST-----------THHHHHHHHHHHHHHSSSCEEECCTTC
T ss_pred             -----CCC-e---eEEEecCCCCCc-----------hHHHHHHHHHHHHHHhcCceeeccccc
Confidence                 344 3   999999999953           246899999999999888999999993

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=99.90  E-value=5.5e-24  Score=201.93  Aligned_cols=110  Identities=27%  Similarity=0.292  Sum_probs=99.0

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 007244          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (611)
Q Consensus       343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~  422 (611)
                      ++|.+++|||+++.      +|||||+||..|. +||||++||++++|++|+++|++. +++++|++++|+      + .
T Consensus         2 ~~i~i~~GDI~~~~------~daIVnaaN~~l~-~ggGv~~aI~~~~G~~l~~~c~~~-g~~~~G~a~it~------~-~   66 (159)
T 2dx6_A            2 ARIRVVQGDITEFQ------GDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRI-GKIRVGEAAVTG------A-G   66 (159)
T ss_dssp             CEEEEEESCGGGCC------SSEEEEEEETTCC-CCSTTHHHHHHHHCTHHHHHHHHH-CCCCTTCEEEEE------C-T
T ss_pred             eEEEEEECcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHhc-CCCCCCcEEEec------C-C
Confidence            47899999999997      9999999999999 899999999999999999999986 789999999998      2 3


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       423 ~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                      +|++++|||+|||.|+ . .         ..+.|++||+++|+.+     .|||||+||-+
T Consensus        67 ~L~~~~Vih~vgp~~~-~-~---------~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG  116 (159)
T 2dx6_A           67 NLPVRYVIHAAVLGDE-P-A---------SLETVRKATKSALEKAVELGLKTVAFPLLGTG  116 (159)
T ss_dssp             TSSSSEEEEEEEESSS-C-C---------CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred             CCCCCEEEEEeCCCCC-C-c---------hHHHHHHHHHHHHHHHHHcCCcEEEECCccCC
Confidence            4788999999999997 2 1         2689999999999987     49999999943

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=99.89  E-value=3.8e-24  Score=204.56  Aligned_cols=107  Identities=28%  Similarity=0.387  Sum_probs=93.7

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~  421 (611)
                      ..+|.|++||||++.      +||||||||+.|. +||||++||+++||++++      .+.+++|++++|+.       
T Consensus         3 ~~~i~v~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~-------   62 (168)
T 3gqe_A            3 APSYHVVRGDIATAT------EGVIINAANSKGQ-PGGGVCGALYKKFPESFD------LQPIEVGKARLVKG-------   62 (168)
T ss_dssp             CCEEEEEESCGGGCC------SSEEEEEECTTSC-CTTGGGSHHHHHCGGGCC------CCCCCTTCEEEECC-------
T ss_pred             CCeEEEEeCcccCcc------cCEEEeCCCcccC-CCccHHHHHHHHhhHHhc------CCCcCCCcEEEEcC-------
Confidence            468999999999997      9999999999999 899999999999999875      37899999999983       


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                         +++||||+|||.|+...       ..++.++|++||+++|++|     .|||||+||-+
T Consensus        63 ---~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG  114 (168)
T 3gqe_A           63 ---AAKHIIHAVGPNFNKVS-------EVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTG  114 (168)
T ss_dssp             ---TTCCEEEEECCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSS
T ss_pred             ---CCCEEEEcCCCccCCCC-------chhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence               35999999999998652       1234689999999999987     49999999933

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=99.89  E-value=2.4e-24  Score=208.60  Aligned_cols=110  Identities=26%  Similarity=0.343  Sum_probs=97.0

Q ss_pred             CeEEEEEEccccee----cccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecC
Q 007244          342 PKKFFTFVGDITRL----YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL  414 (611)
Q Consensus       342 ~~~v~i~~GDIt~~----~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l  414 (611)
                      +.+|.|++||||++    .      +||||||||+.|. +||||++||+++||++|++||+++   .+++++|++++|+ 
T Consensus        19 ~~~i~i~~GDIt~~~~~~~------vDAIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-   90 (182)
T 2acf_A           19 TDNVAIKCVDIVKEAQSAN------PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS-   90 (182)
T ss_dssp             SSSEEEEESCHHHHHHHHC------CSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE-
T ss_pred             CCeEEEEeCcccccccCCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEee-
Confidence            35799999999999    7      9999999999999 899999999999999999999986   3789999999998 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCC
Q 007244          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKL  477 (611)
Q Consensus       415 ~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~  477 (611)
                           +++ |+ ++|||+|||.|+.+.          ..++|++||+++ ..+.|||||+||-
T Consensus        91 -----~~~-L~-~~VIH~vgP~~~~~~----------~~~~L~~~y~~~-~~~~SIAfP~Ist  135 (182)
T 2acf_A           91 -----GHN-LA-KKCLHVVGPNLNAGE----------DIQLLKAAYENF-NSQDILLAPLLSA  135 (182)
T ss_dssp             -----CTT-TC-SEEEEECCCCGGGTC----------CTTHHHHHHHGG-GGSSEEEECCTTC
T ss_pred             -----CCC-CC-ceEEEECCCCCCCCc----------hHHHHHHHHHHh-cCCCEEEECCccc
Confidence                 344 54 799999999997532          257999999998 5688999999993

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=99.89  E-value=3.1e-24  Score=205.06  Aligned_cols=106  Identities=24%  Similarity=0.232  Sum_probs=91.5

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 007244          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (611)
Q Consensus       343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~  422 (611)
                      ....|++||||++.      +||||||||+.|. +||||++||+++||++++      .+.+++|++++|+.        
T Consensus        10 ~~~~~~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~--------   68 (168)
T 3gpg_A           10 PSYRVKRMDIAKND------EECVVNAANPRGL-PGDGVCKAVYKKWPESFK------NSATPVGTAKTVMC--------   68 (168)
T ss_dssp             CCC-CEESCGGGCC------SSCEEEECCTTCC-CCSHHHHHHHHHCGGGGT------TCCCCTTCEEEEEE--------
T ss_pred             CceEEEeCcCCccc------CCEEEeCCCcccC-CCchHHHHHHHHhhHHhh------cCCCCCCCEEEecC--------
Confidence            45679999999998      9999999999999 899999999999999874      37899999999993        


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCCC
Q 007244          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKLS  478 (611)
Q Consensus       423 ~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~~  478 (611)
                        +|++|||+|||.|+....       .++.++|++||++||++|     .|||||+||-+
T Consensus        69 --~~k~VIHtVGP~~~~~~~-------~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstG  120 (168)
T 3gpg_A           69 --GTYPVIHAVGPNFSNYSE-------SEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTG  120 (168)
T ss_dssp             --TTEEEEEECCCCTTTSCH-------HHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSS
T ss_pred             --CCCEEEEeCCCCcCCCCc-------chHHHHHHHHHHHHHHHHHHhCCcEEEECccccC
Confidence              369999999999987531       234689999999999987     49999999933

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=99.89  E-value=6.4e-24  Score=204.43  Aligned_cols=113  Identities=25%  Similarity=0.277  Sum_probs=96.9

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS  418 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~  418 (611)
                      +.+|.+++||||++..  ...+||||||||..|. +||||++||+++|||+|+++|+++   .+++++|++++|+     
T Consensus        16 ~~~i~i~~GDIt~~~~--~~~~DaIVNaaN~~l~-~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-----   87 (174)
T 2vri_A           16 YKNVKFYLGDISHLVN--CVSFDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLE-----   87 (174)
T ss_dssp             ETTEEEEESCHHHHTT--TSCCSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-----
T ss_pred             CCeEEEEecccccccc--CCCccEEEECCCccCC-CCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEE-----
Confidence            3569999999999810  0129999999999999 999999999999999999999986   3789999999998     


Q ss_pred             CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCCC
Q 007244          419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLS  478 (611)
Q Consensus       419 ~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~~  478 (611)
                       +++    .+|||+|||+|+..           ..++|++||+++|+...|||||+||-+
T Consensus        88 -~~~----l~VIH~vgP~~~~~-----------~~~~L~~~y~~~L~~~~SIAfP~IstG  131 (174)
T 2vri_A           88 -CEK----FNVFNVVGPRTGKH-----------EHSLLVEAYNSILFENGIPLMPLLSCG  131 (174)
T ss_dssp             -CSS----CEEEEEECCCSSTT-----------HHHHHHHHHHHHHHSSSCEEEECSSCG
T ss_pred             -CCC----CEEEEEcCCCCCcc-----------hHHHHHHHHHHHHhhCCcEEeCccccC
Confidence             333    39999999999421           378999999999998889999999933

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=99.89  E-value=1.4e-23  Score=208.00  Aligned_cols=120  Identities=28%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             HhhhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhc----HHHHHHHHHh---cCC--C
Q 007244          334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG----PALEVATAER---AKS--L  404 (611)
Q Consensus       334 ~~~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG----~~l~~e~~~~---~~~--~  404 (611)
                      ..++.++++++|.|++||||++.      +||||||||..|. +||||++||+++||    |+|+++|+++   .++  +
T Consensus        12 ~~~~~~~~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~   84 (211)
T 1vhu_A           12 VLFEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYI   84 (211)
T ss_dssp             EEEEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCC
T ss_pred             hhhheeECCEEEEEEecccCcCC------CCEEEECCCcccc-CccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcc
Confidence            34567899999999999999997      9999999999999 89999999999999    9999999984   266  9


Q ss_pred             CCCCEEEecCCCCCCCCCCCCc---cEEEEecCC----CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhc
Q 007244          405 YPGNSVIVPLPSTSPLCGREGV---THVIHVLGP----NMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVR  472 (611)
Q Consensus       405 ~~G~~v~T~l~~~~~~~~~l~~---k~ViH~vgP----~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siaf  472 (611)
                      ++|++++|+      + ..|++   +||||+|||    .|+.           ...++|++||++||++|     .||||
T Consensus        85 ~~G~a~iT~------~-~~L~~~g~k~VIH~vgP~~~~~~~~-----------~~~~~L~~~y~~~L~~A~~~~i~SIAf  146 (211)
T 1vhu_A           85 DHGEVVVTP------A-MNLEERGIKYVFHTVGPICSGMWSE-----------ELKEKLYKAFLGPLEKAEEMGVESIAF  146 (211)
T ss_dssp             CTTCCEEEE------C-GGGGGGTCCEEEEEECCCCTTCCCH-----------HHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCcEEEEE------C-CCCCccCcCEEEEecCCccccccCc-----------chHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence            999999998      2 23556   999999999    8842           24689999999999987     49999


Q ss_pred             cccCCC
Q 007244          473 SQEKLS  478 (611)
Q Consensus       473 p~~~~~  478 (611)
                      |+||-+
T Consensus       147 P~IstG  152 (211)
T 1vhu_A          147 PAVSAG  152 (211)
T ss_dssp             CCTTSS
T ss_pred             ccccCC
Confidence            999943

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=99.89  E-value=6.4e-24  Score=204.16  Aligned_cols=119  Identities=24%  Similarity=0.258  Sum_probs=97.6

Q ss_pred             hcCCeEEEEEEcccceecccC--cccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 007244          339 HINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP  413 (611)
Q Consensus       339 ~~~~~~v~i~~GDIt~~~~~~--~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~---~~~~~G~~v~T~  413 (611)
                      .-++.+|+|++||||++..+.  +.++||||||||+.|. +||||++||+++|||+|++||+++.   ++++   +++|+
T Consensus        10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~   85 (176)
T 3ejf_A           10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTP   85 (176)
T ss_dssp             CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCC-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEEC
T ss_pred             CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecc
Confidence            346789999999999996211  2235679999999999 8999999999999999999999873   6666   77887


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHhhccccCCC
Q 007244          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG-FLSIVRSQEKLS  478 (611)
Q Consensus       414 l~~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~-a~siafp~~~~~  478 (611)
                            |+ .+.+++|||+|||.|+..          ...++|++||+++|+. +.|||||+||-+
T Consensus        86 ------G~-~l~t~~VIHtVGP~~~~~----------~~~~~L~~~y~~~L~~~~~SIAfPaIstG  134 (176)
T 3ejf_A           86 ------SF-VKGIQCVNNVVGPRHGDN----------NLHEKLVAAYKNVLVDGVVNYVVPVLSLG  134 (176)
T ss_dssp             ------CC-STTEEEEEEECCCCTTCS----------CHHHHHHHHHHTTCCTTCCEEEEECCCTT
T ss_pred             ------cc-cccCCEEEEeCCCCCCCc----------cHHHHHHHHHHHHHHcCCcEEEECccccC
Confidence                  22 367799999999999542          2468999999999983 679999999943

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=99.86  E-value=6.8e-22  Score=203.24  Aligned_cols=135  Identities=18%  Similarity=0.165  Sum_probs=101.1

Q ss_pred             CeEEEEEEcccceec---ccCcc----cccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh--cCCCCCCCEEE
Q 007244          342 PKKFFTFVGDITRLY---TGGGL----CCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER--AKSLYPGNSVI  411 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~---~~~~~----~~daIVN~aN~~L~~~ggGVa~aI~~aAG-~~l~~e~~~~--~~~~~~G~~v~  411 (611)
                      +.+|.|++||||++.   .+|++    .+||||||||+.|. +||||++||+++|| +.|+++|++.  .+.+++|++++
T Consensus        44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~-~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~i  122 (284)
T 1njr_A           44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATV  122 (284)
T ss_dssp             -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEE
T ss_pred             CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCC-CCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEE
Confidence            568999999999991   12222    39999999999999 99999999999975 7889999986  36799999999


Q ss_pred             ecCC---CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccCCC
Q 007244          412 VPLP---STSPLCGREGVTHVIHVLGPNMNPRR-PNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS  478 (611)
Q Consensus       412 T~l~---~~~~~~~~l~~k~ViH~vgP~~~~~~-~~~~~~~~~~~~~~L~~ay~~~L~~a----~siafp~~~~~  478 (611)
                      |+..   ..+-...+|+|+||||+|||.|.... .+. .+.+....+.|++||+++|..|    .|||||+||-+
T Consensus       123 T~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~-~~p~~~~~~~L~~~~~~~L~~ae~~i~SIAfPaIsTG  196 (284)
T 1njr_A          123 VDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP-QNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTG  196 (284)
T ss_dssp             EEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT-TCHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCS
T ss_pred             EECCcccccccchhcCCCCEEEEeCCCccCCCCCccc-ccccccHHHHHHHHHHHHHHHHHhCCCEEEECccccc
Confidence            9821   00000127999999999999996541 000 0000124689999999999964    69999999944

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=99.84  E-value=3.9e-21  Score=207.95  Aligned_cols=161  Identities=19%  Similarity=0.251  Sum_probs=115.6

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHh---cC-------CeEEEEeecCcch------hhhhhhHHHhhhhhc---C-CeEEEE
Q 007244          288 DFQFNNEKASDVIIEKVEEFVNK---LG-------NARLVLVDLTQGS------KILSLVRAKAAQKHI---N-PKKFFT  347 (611)
Q Consensus       288 i~gfP~~~aa~Iiv~tv~~f~~~---~~-------~i~iV~vd~s~~s------~~Ls~V~s~~~~~~~---~-~~~v~i  347 (611)
                      -|||--.....|+....+.|...   .|       ++-++|..+....      ..|+..-+..|.-..   | -..+.|
T Consensus       269 ~YGyADr~sE~vv~alaRkF~~~rv~~p~~~~snTEv~~~f~~~Dn~r~r~~~~~~l~~~l~~iy~g~~~~aG~APsfrI  348 (670)
T 4gua_A          269 SYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNSRTRQFTPHHLNCVISSVYEGTRDGVGAAPSYRT  348 (670)
T ss_dssp             ESCCCSHHHHHHHHHHHHTEEEEEEECCTTCSBTTCEEEEEEEECCCSSCCCCSHHHHHHHHHHHTTSCCCCCCCCCEEE
T ss_pred             EeeccccchHHHHHHHHhheeeeeeeCCCccccCceEEEEEEecCCCcccccCHHHhhhHHHHhhhccccccCcCcceeE
Confidence            37887666666666555555332   12       2445553233211      122222122233222   2 147999


Q ss_pred             EEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCCCcc
Q 007244          348 FVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVT  427 (611)
Q Consensus       348 ~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~~~~l~~k  427 (611)
                      ++||||+..      +|||||+||..|. +||||++||+++||+++..      +.+++|++++|+      ++.    +
T Consensus       349 IRgDITk~~------vDAIVNAANtsL~-gGgGVdGAIhraaG~~ll~------~~~~tG~AkIT~------g~a----K  405 (670)
T 4gua_A          349 KRENIADCQ------EEAVVNAANPLGR-PGEGVCRAIYKRWPTSFTD------SATETGTARMTV------CLG----K  405 (670)
T ss_dssp             ECSCGGGCC------SSEEEEECCTTCC-CCSSHHHHHHHHCGGGGTT------CCCCTTCEEEEE------ETT----E
T ss_pred             Eeccccccc------cCEEEeCCCCCCC-CcCCHhHHHHHHhhHHHhc------CCCCcceEEEec------CCC----c
Confidence            999999998      9999999999999 8999999999999998875      468999999998      333    9


Q ss_pred             EEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244          428 HVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS  478 (611)
Q Consensus       428 ~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~  478 (611)
                      ||||+|||+|+....       .+..++|++||+++|++|.     |||||+|+-+
T Consensus       406 yIIHtVGPvw~~g~~-------~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTG  454 (670)
T 4gua_A          406 KVIHAVGPDFRKHPE-------AEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTG  454 (670)
T ss_dssp             EEEEECCCCTTSSCH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSS
T ss_pred             eEEEcCCCCccCCCC-------chHHHHHHHHHHHHHHHHHHcCCcEEEEcccccc
Confidence            999999999987632       2345799999999999974     9999999943

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.71  E-value=3.7e-17  Score=177.08  Aligned_cols=142  Identities=23%  Similarity=0.328  Sum_probs=125.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~   95 (611)
                      ...+|.+|+|+|+|||||||+|++|++.++  +.+|+.|.+.     .+..+...+.+.+..|..||+|++++...+|..
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~  326 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLG-----SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR  326 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGSC-----SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--cEEEccchHH-----HHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence            356689999999999999999999999887  7789999873     456677888999999999999999999999999


Q ss_pred             HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCC
Q 007244           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus        96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~  165 (611)
                      ++.+ +..+..+.+|+|++|.++|++|+.+|..+.. ....++++++.++.+.+++|...|+|+.|+.++-
T Consensus       327 ~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~  396 (416)
T 3zvl_A          327 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDP-SHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPF  396 (416)
T ss_dssp             HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCT-TCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECC
T ss_pred             HHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEec
Confidence            9999 8888889999999999999999999987433 2236789999999999999999999999998873

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=99.68  E-value=3.8e-17  Score=153.37  Aligned_cols=108  Identities=11%  Similarity=0.134  Sum_probs=90.3

Q ss_pred             CCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 007244          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (611)
Q Consensus       341 ~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~~~~~~~G~~v~T~l~~~~~~  420 (611)
                      ++++|++++||||+..     .+|+|||++|..|. +||||++||++++| ++ .+|.+  +.+++|++++|+.      
T Consensus         7 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~G~Gva~ai~~~~p-~~-~~~~~--~~~~~G~a~it~~------   70 (149)
T 2eee_A            7 GGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFG-GV-QELLN--QQKKSGEVAVLKR------   70 (149)
T ss_dssp             SSCCCEEECSCSSSSC-----SSCEEEEEEETTCC-CCSTTHHHHHHHTC-CH-HHHHT--TCCCTTCEEEEES------
T ss_pred             CCeeEEEEecccccCC-----CCcEEEEEeCCCCC-cCCcHHHHHHHHCc-HH-HHHhc--ccCCCccEEEEEc------
Confidence            4678999999999975     26999999999999 99999999999995 45 46765  6799999999983      


Q ss_pred             CCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----HhhccccCCC
Q 007244          421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEKLS  478 (611)
Q Consensus       421 ~~~l~~k~ViH~vgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~-----siafp~~~~~  478 (611)
                          +.++|||++||. |.. .++         .+.|++||+++|+.+.     |||||+||-+
T Consensus        71 ----~~~~Vih~v~~~~~~~-~~~---------~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG  120 (149)
T 2eee_A           71 ----DGRYIYYLITKKRASH-KPT---------YENLQKSLEAMKSHCLKNGVTDLSMPRIGCG  120 (149)
T ss_dssp             ----SSSEEEEEEEESSTTS-CCC---------HHHHHHHHHHHHHHHHHHTCCEEECCCCCCT
T ss_pred             ----CCCEEEEEEecCCCCC-CCC---------HHHHHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence                238999999998 644 332         6899999999999864     9999999943

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=99.64  E-value=2.3e-16  Score=149.36  Aligned_cols=119  Identities=15%  Similarity=0.056  Sum_probs=92.1

Q ss_pred             CeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 007244          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS  418 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~  418 (611)
                      .+.|++++||||+..   ...+|+|||++|..+. +||||++||++++ |++++++++.   .+.+++|++++|+.    
T Consensus         3 ~M~i~~v~GDit~~~---~~~~daIvn~~N~~~~-~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~----   73 (158)
T 2fg1_A            3 AMEILYIKGDATAPI---GSGVKVITHICNDIGG-WGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNV----   73 (158)
T ss_dssp             CCCCEEEESCTTSCC---SSSCEEEEEEEETTCC-CCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEE----
T ss_pred             ceEEEEEecccCCCC---CCCCeEEEEEecCCCC-cCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEec----
Confidence            467899999999931   0127999999999999 9999999999999 6777776553   25789999999982    


Q ss_pred             CCCCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH----HhhccccCCC
Q 007244          419 PLCGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL----SIVRSQEKLS  478 (611)
Q Consensus       419 ~~~~~l~~k~ViH~vgP~-~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~----siafp~~~~~  478 (611)
                        +   +.++|||++||. |......    ......+.|++||+++++.+.    |||||.||.+
T Consensus        74 --~---~~~~Vi~~v~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig~G  129 (158)
T 2fg1_A           74 --E---NKLYVANMIGQHGIYKDSKG----LPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCG  129 (158)
T ss_dssp             --E---TTEEEEEEEEESSSSCCTTC----CCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCS
T ss_pred             --C---CCeEEEEEEEEcccCCCCCC----CccccHHHHHHHHHHHHHHHHHhCCeEEecCcCCC
Confidence              1   128999999998 7533210    011136899999999999875    9999999943

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.64  E-value=5.4e-16  Score=145.94  Aligned_cols=129  Identities=23%  Similarity=0.298  Sum_probs=102.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHH-HcCCCeEEeecchhcc---C-------CCCcH-H-----HHHHHHHHHH---HCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMR-SSARPWARICQDTINK---G-------KSGTK-V-----QCLTSASSAL---KKG   78 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~-~~~~~~~~Is~D~i~~---~-------~~~~~-~-----~~~~~~~~~L---~~G   78 (611)
                      ||.+|+|+|+|||||||+|+.|++ .++  +.+++.|.++.   +       .+... .     .+...+...+   ..|
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            578999999999999999999998 455  77898888742   1       11111 1     1235567778   789


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccC
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE  155 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~E  155 (611)
                      ..||+|+++....+|..+.++ +..++.+.+|+|++|.+++.+|+.+|..+      ..+++.+.++++.++.|...+
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~  150 (181)
T 1ly1_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLP  150 (181)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHHHHTCC
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC------CCCHHHHHHHHHHhhccCCCC
Confidence            999999999999999888887 66677778999999999999999999864      467888999999888775444

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.52  E-value=1.5e-13  Score=139.27  Aligned_cols=128  Identities=23%  Similarity=0.312  Sum_probs=99.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhccCCCC--c-HHH-----HHHHHHHHHHCCCcEEEecCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSG--T-KVQ-----CLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~D~i~~~~~~--~-~~~-----~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ++.+|+|+|+|||||||+|+.|++.   .+..+.+++.|.++.....  . ...     ....+...+.. ..||+|+++
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~   81 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTN   81 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCc
Confidence            3569999999999999999999987   6655555688888643211  1 111     22455666766 889999999


Q ss_pred             CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCcc
Q 007244           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLS  154 (611)
Q Consensus        88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~  154 (611)
                      +....|..+..+ +..+....+|+|++|.++|.+|+.+|..       ..+.+.++++...++.|...
T Consensus        82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-------~~~~~~l~~~~~~~e~~~~~  142 (260)
T 3a4m_A           82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-------KIPNEVIKKMYEKFDEPGKK  142 (260)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------SSCHHHHHHHHHHCCCTTSS
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHhcCcccc
Confidence            999999988888 7677778899999999999999999863       34678899999989888753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.51  E-value=4.6e-14  Score=144.74  Aligned_cols=127  Identities=23%  Similarity=0.298  Sum_probs=101.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhcc-------CC---CCc-HH-----HHHHHHHHHH---HCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK-------GK---SGT-KV-----QCLTSASSAL---KKG   78 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~-------~~---~~~-~~-----~~~~~~~~~L---~~G   78 (611)
                      ||.+|+|+|+|||||||+++.|++.+ +  +.+++.|.++.       ++   +.. .+     .+...+...+   ..|
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            57899999999999999999999874 5  77899887742       11   111 11     1235566777   788


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCc
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL  153 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~  153 (611)
                      ..||+|++++...+|..+..+ +..++.+.+|+|++|.+++.+|+.+|..|      .++++.++++++.++.+..
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~e~i~~~~~~~~~~~~  148 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLG  148 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG------CCCHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHHhcccC
Confidence            999999999999999999888 66778888999999999999999999865      4678888998888866543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.46  E-value=1.1e-12  Score=126.95  Aligned_cols=144  Identities=17%  Similarity=0.200  Sum_probs=103.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCCCcH---HHHHHHHHHHHHCCCcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK---VQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~~~~---~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      .++.+|+|+|+|||||||+++.|++.++  +.+++.|.+..         +.....   ...+..+...+..|..+|+|+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~   93 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSC   93 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEEC
Confidence            4567999999999999999999999988  45588887742         221111   223456667778889999999


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCC
Q 007244           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus        86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~  165 (611)
                      +++....+..+..+  .+....+|+|++|.+++.+|+.+|..+      ..+.+.+.++...++.+...+.  .+++..+
T Consensus        94 ~~~~~~~~~~l~~~--~~~~~~vi~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~Id~~  163 (202)
T 3t61_A           94 SALKRSYRDKLRES--APGGLAFVFLHGSESVLAERMHHRTGH------FMPSSLLQTQLETLEDPRGEVR--TVAVDVA  163 (202)
T ss_dssp             CCCSHHHHHHHHHT--STTCCEEEEEECCHHHHHHHHHHHHSS------CCCHHHHHHHHHHCCCCTTSTT--EEEEESS
T ss_pred             CCCCHHHHHHHHHh--cCCCeEEEEEeCCHHHHHHHHHHhhcc------CCCHHHHHHHHHhcCCCCCCCC--eEEEeCC
Confidence            99888888777665  233456899999999999999999764      2347888888888877653333  3433333


Q ss_pred             hhhHHHHHH
Q 007244          166 ENDVQAALD  174 (611)
Q Consensus       166 ~~evd~av~  174 (611)
                       ..+++++.
T Consensus       164 -~~~~e~~~  171 (202)
T 3t61_A          164 -QPLAEIVR  171 (202)
T ss_dssp             -SCHHHHHH
T ss_pred             -CCHHHHHH
Confidence             44444443

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.44  E-value=5.7e-13  Score=137.35  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=107.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC---------CcH--------H-H-HHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS---------GTK--------V-Q-CLTSASSALK   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~---------~~~--------~-~-~~~~~~~~L~   76 (611)
                      ...+|.+|+|+|+|||||||+++.|++.++..+.+|+.|.++....         +.+        . . ....+...+.
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~  108 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  108 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            3456899999999999999999999998854578899998863221         111        0 1 1245567788


Q ss_pred             CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHH----HHHHHhcccccCCCCCCCHH----HHHHHHHhh
Q 007244           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLC----ISRSVKRIEHEGNLQGGKAA----AVVNRMLQK  147 (611)
Q Consensus        77 ~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~----~~Rl~~R~~~~g~~~~~vpe----evi~rm~~~  147 (611)
                      .|.+||+|+++....++..+++. +..++.+.+++|.+|.+++    .+|+..|..+.+.....++.    .+..++...
T Consensus       109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a  188 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTN  188 (287)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999888888888887 7788888889999999999    88887775432211113443    344455555


Q ss_pred             ccCCCccCCccEEEEcCCh
Q 007244          148 KELPKLSEGFSRITLCQNE  166 (611)
Q Consensus       148 ~e~P~~~EgFd~V~vv~~~  166 (611)
                      +.+......||++++++..
T Consensus       189 ~~el~~~~~~d~v~v~d~~  207 (287)
T 1gvn_B          189 LETLHKTGLFSDIRLYNRE  207 (287)
T ss_dssp             HHHHHHHTCCSCEEEECTT
T ss_pred             HHHHHcCCCCCeEEEEeCC
Confidence            5444445568888888753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.42  E-value=7.9e-12  Score=117.76  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=95.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCCCcH------HH-HHHHHHHHHHCCCc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTK------VQ-CLTSASSALKKGKS   80 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~~~~------~~-~~~~~~~~L~~Gk~   80 (611)
                      ..++.+|+|+|+|||||||+++.|+..++  +.+++.|.+..         +.....      .. ....+...+..|..
T Consensus         5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (175)
T 1knq_A            5 NHDHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKV   82 (175)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCc
Confidence            34567999999999999999999998887  66688887632         211111      11 12334445567889


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V  160 (611)
                      +|+|.+.+....+..+   +..+..+.+|+|++|.+++.+|+.+|..+.      ....++.++...++.|.+.+ ...+
T Consensus        83 ~vi~~~~~~~~~~~~l---~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~  152 (175)
T 1knq_A           83 SLIVCSALKKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETLQEPGADE-TDVL  152 (175)
T ss_dssp             EEEECCCCSHHHHHHH---HTTCTTEEEEEEECCHHHHHHHHHTSTTCC------CCHHHHHHHHHHCCCCCTTC-TTEE
T ss_pred             EEEEeCchHHHHHHHH---HhcCCCEEEEEEECCHHHHHHHHHhccCCC------CchHHHHHHHHhhhCcccCC-CCeE
Confidence            9999888777666555   333345678999999999999999997541      23566676666666552222 2344


Q ss_pred             EEcCChhhHHHHHH
Q 007244          161 TLCQNENDVQAALD  174 (611)
Q Consensus       161 ~vv~~~~evd~av~  174 (611)
                      ++..+ ..++++..
T Consensus       153 ~Id~~-~~~~~~~~  165 (175)
T 1knq_A          153 VVDID-QPLEGVVA  165 (175)
T ss_dssp             EEECS-SCHHHHHH
T ss_pred             EEeCC-CCHHHHHH
Confidence            44433 45555444

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.40  E-value=1.3e-12  Score=128.55  Aligned_cols=105  Identities=18%  Similarity=0.365  Sum_probs=83.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhc------------------cCCCCcHHHHHHHHHHHHHCCCcEE
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTIN------------------KGKSGTKVQCLTSASSALKKGKSVF   82 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~------------------~~~~~~~~~~~~~~~~~L~~Gk~VI   82 (611)
                      +|+|.|||||||+|+|+.|++.++  +.+|+. |.++                  .|...+.+-+...+.++|.....+|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~i   79 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVI   79 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceE
Confidence            688999999999999999999999  667885 4443                  2344444555678888888888899


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcccc
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      +|+.+.+..+...+..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus        80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~  127 (206)
T 3sr0_A           80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRIN  127 (206)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccc
Confidence            99999999998888766 4444433 6889999999999999999643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.39  E-value=5.9e-12  Score=118.60  Aligned_cols=108  Identities=18%  Similarity=0.260  Sum_probs=78.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---CCC-----------------C-cHHHH----HHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS-----------------G-TKVQC----LTSASS   73 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---~~~-----------------~-~~~~~----~~~~~~   73 (611)
                      ++.+|+|+|+|||||||+++.|++.++.++.+++.|.+..   +..                 . .+..+    ...+..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            4578999999999999999999999987787777775521   100                 0 01122    234566


Q ss_pred             HHHCCCcEEEecCCCC-HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           74 ALKKGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl~-~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .+..|.+||+|.+.+. ...+..++++ +..  .+.+|++++|.+++.+|+..|..+
T Consensus        82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~l~~R~~~r~~~  136 (178)
T 1qhx_A           82 MARAGARIIIDDVFLGGAAAQERWRSFVGDL--DVLWVGVRCDGAVAEGRETARGDR  136 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTC--CEEEEEEECCHHHHHHHHHHTSSS
T ss_pred             HHhcCCeEEEEeccccChHHHHHHHHHhcCC--cEEEEEEECCHHHHHHHHHhhCCc
Confidence            6788899999997763 4556666665 543  356888999999999999999764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.37  E-value=9e-12  Score=118.03  Aligned_cols=127  Identities=21%  Similarity=0.378  Sum_probs=86.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHHHHHHHHHH-
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK-   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~~~~~~~L~-   76 (611)
                      ..++.+|+|+|+|||||||+++.|++.++  +.+++.|.+..                   +...........+...+. 
T Consensus         3 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~   80 (194)
T 1qf9_A            3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHHhC--CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence            35778999999999999999999999988  56687765521                   111112222334444443 


Q ss_pred             -CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        77 -~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                       .+..+|+|+++....++..+... ......-.+|+|++|.+++.+|+..|....+ +.....+.+..|+..
T Consensus        81 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-r~~~~~~~~~~ri~~  151 (194)
T 1qf9_A           81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG-RSDDNIESIKKRFNT  151 (194)
T ss_dssp             STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC-CTTCSHHHHHHHHHH
T ss_pred             cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCC-CCCCCHHHHHHHHHH
Confidence             56789999988888888877766 4322233589999999999999999864211 222334555555544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.36  E-value=1.2e-11  Score=119.63  Aligned_cols=146  Identities=21%  Similarity=0.197  Sum_probs=98.3

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCCCcHH------H-HHHHHHHHHHCCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKV------Q-CLTSASSALKKGK   79 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~~~~~------~-~~~~~~~~L~~Gk   79 (611)
                      ...++.+|+|+|+|||||||+++.|+..++  +..++.|.+..         +......      . ....+...+..|.
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  102 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGV  102 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCC
Confidence            345678999999999999999999999887  56688877632         2111111      1 2244555667889


Q ss_pred             cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccE
Q 007244           80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~  159 (611)
                      .+|+|...+....|..+..+   ...+.+|+|++|.+++.+|+.+|..+.      .+.+.+.+++..++++...+.  .
T Consensus       103 ~viid~~~~~~~~~~~l~~~---~~~~~vv~l~~~~e~l~~Rl~~R~~~~------~~~~~l~~~~~~~~~~~~~~~--~  171 (200)
T 4eun_A          103 STIITCSALKRTYRDVLREG---PPSVDFLHLDGPAEVIKGRMSKREGHF------MPASLLQSQLATLEALEPDES--G  171 (200)
T ss_dssp             CEEEEECCCCHHHHHHHTTS---SSCCEEEEEECCHHHHHHHHTTCSCCS------SCGGGHHHHHHHCCCCCTTSC--E
T ss_pred             CEEEEchhhhHHHHHHHHHh---CCceEEEEEeCCHHHHHHHHHhcccCC------CCHHHHHHHHHHhCCCCCCCC--e
Confidence            99999988887777766443   224568999999999999999997642      235677777777765543332  3


Q ss_pred             EEEcCChhhHHHHHHH
Q 007244          160 ITLCQNENDVQAALDT  175 (611)
Q Consensus       160 V~vv~~~~evd~av~~  175 (611)
                      +++.. ...+++++..
T Consensus       172 ~~Id~-~~~~~e~~~~  186 (200)
T 4eun_A          172 IVLDL-RQPPEQLIER  186 (200)
T ss_dssp             EEEET-TSCHHHHHHH
T ss_pred             EEEEC-CCCHHHHHHH
Confidence            33333 2355555543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.35  E-value=4.6e-12  Score=125.84  Aligned_cols=124  Identities=23%  Similarity=0.326  Sum_probs=85.5

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhc------------------cCCCCcHHHHHHHHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTIN------------------KGKSGTKVQCLTSASSAL   75 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~------------------~~~~~~~~~~~~~~~~~L   75 (611)
                      +.-.+|.+|+|.|||||||+|+|+.|++.++  +.+|+. |.++                  .|...+.+.+...+.++|
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l  101 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM  101 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            4567789999999999999999999999998  677885 3343                  133333343445555555


Q ss_pred             H----CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           76 K----KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        76 ~----~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      .    ....+|+|+.+.+..+...+... ....   .+|+|++|.+++.+|+..|....+ +.++.++.+.+|+
T Consensus       102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~~e~~~~Rl~~R~~~~~-R~DD~~e~i~~Rl  171 (217)
T 3umf_A          102 IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVSEEVMRKRLLKRAETSN-RVDDNEETIVKRF  171 (217)
T ss_dssp             HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHSCC-------CHHHHHHHHHHH
T ss_pred             hhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCCHHHHHHHHhcccccCC-CCCCCHHHHHHHH
Confidence            3    34569999999998888877665 4333   488999999999999999965321 2333444444443

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.35  E-value=9.6e-12  Score=118.03  Aligned_cols=107  Identities=19%  Similarity=0.366  Sum_probs=75.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------------------CCCCcHHHH----HHHHHH-
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKSGTKVQC----LTSASS-   73 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------------------~~~~~~~~~----~~~~~~-   73 (611)
                      +|.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..                    +........    ...+.. 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   79 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT   79 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence            467999999999999999999999988  55688765521                    111111111    112222 


Q ss_pred             --HHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           74 --ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        74 --~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                        .+..+..||+|+++....+++.|... ......-.+|+|++|.+++.+|+.+|..
T Consensus        80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence              22357889999999998888888766 4332333688999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.31  E-value=9.2e-12  Score=124.89  Aligned_cols=109  Identities=24%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK-   77 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~-   77 (611)
                      .+|.+|+|+|+|||||||+|+.|++.++  +.+++.|.+ +                  .+...+...+...+...+.. 
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~  104 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTP  104 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcc
Confidence            5688999999999999999999999988  556776543 1                  23333444444566666655 


Q ss_pred             --CCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 007244           78 --GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 --Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                        +..+|+|+.+....+...+..+ ...+. .-.+|+|++|.+++.+|+.+|..+
T Consensus       105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~  159 (243)
T 3tlx_A          105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIH  159 (243)
T ss_dssp             GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE
T ss_pred             cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCC
Confidence              6789999988888887777665 33333 236889999999999999999753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.31  E-value=8.8e-12  Score=125.54  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC---------CCc---------HHH-HHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT---------KVQ-CLTSASSALK   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~---------~~~---------~~~-~~~~~~~~L~   76 (611)
                      ...+|.+|+|+|+|||||||+++.|++.++..+.+++.|.++...         .+.         ... +...+...+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  107 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS  107 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence            456689999999999999999999999987667788999885421         111         111 1234455667


Q ss_pred             CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 ~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .|.++|||+++....++..+..+ +..++.+.++++++|.++|.+|+.+|..
T Consensus       108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~  159 (253)
T 2p5t_B          108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE  159 (253)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence            78899999998888888888888 7788888899999999999999988864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.30  E-value=3.2e-12  Score=124.02  Aligned_cols=140  Identities=15%  Similarity=0.204  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCe-EEee--------------------cchh----ccCCCCcHHHH--------H
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPW-ARIC--------------------QDTI----NKGKSGTKVQC--------L   68 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~-~~Is--------------------~D~i----~~~~~~~~~~~--------~   68 (611)
                      +|||+|||||||||++++|.+.++..+ ..++                    .+.+    .++.+.++.++        .
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            489999999999999999998865322 1121                    1111    12333332211        1


Q ss_pred             HHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        69 ~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ..+...+..|+.+|+|.      +++.+..+ +..+. .+.+++++++.+++.+|+..|++       +..+++-.|+.+
T Consensus        83 ~~v~~~l~~g~~vil~i------d~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-------e~~e~i~~Rl~~  149 (186)
T 1ex7_A           83 ASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA  149 (186)
T ss_dssp             HHHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-------SCHHHHHHHHHH
T ss_pred             ceeeehhhCCCEEEecC------CHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHHHH
Confidence            66788999999999999      78888877 55553 44556667789999999999987       466777788877


Q ss_pred             hccCCCcc--CCccEEEEcCChhhHHHHHHHhc
Q 007244          147 KKELPKLS--EGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       147 ~~e~P~~~--EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      ...+....  ..||+|++++   +++.+...+.
T Consensus       150 a~~e~~~~~~~~fD~vIvNd---dle~a~~~l~  179 (186)
T 1ex7_A          150 AQAELAYAETGAHDKVIVND---DLDKAYKELK  179 (186)
T ss_dssp             HHHHHHHHTTTCSSEEEECS---SHHHHHHHHH
T ss_pred             HHHHHhhccccCCcEEEECc---CHHHHHHHHH
Confidence            65433322  3589998875   4555555443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.29  E-value=1.8e-11  Score=115.53  Aligned_cols=126  Identities=10%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc----hhc----cCC--CC---cH-HHHHHHHHHHHHC-CCcEEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----TIN----KGK--SG---TK-VQCLTSASSALKK-GKSVFL   83 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D----~i~----~~~--~~---~~-~~~~~~~~~~L~~-Gk~VII   83 (611)
                      ++.+|+|+|+|||||||+|+.|++.++.+++ ++.|    .++    .+.  +.   .+ ..+...+...+.. |..||+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~   82 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV-FEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIV   82 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE-CCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-EchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            5679999999999999999999999886553 2321    121    111  11   11 1234555666665 788999


Q ss_pred             ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC
Q 007244           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P  151 (611)
                      |.+......+..++.. +..+..+..|+|++|.+++.+|+..|..++      ...+.+.++...++.+
T Consensus        83 d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~  145 (183)
T 2vli_A           83 PVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ------VNVGTVEDRLNELRGE  145 (183)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------CCHHHHHHHHHHHTSG
T ss_pred             eeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc------hhHHHHHHHHHhhccc
Confidence            9988887777776666 555555567999999999999999987532      2346677777776655

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.29  E-value=5.8e-12  Score=119.82  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=77.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC------CCC-cHH---------HHHHHHHHHHHCCCcE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKV---------QCLTSASSALKKGKSV   81 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~------~~~-~~~---------~~~~~~~~~L~~Gk~V   81 (611)
                      .+|.+|+|+|+|||||||+++.|++.++.  .+++.|.++..      ... .+.         .+...+...+..|..|
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~--~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   80 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRL--PLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL   80 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTC--CEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCC--eEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence            45789999999999999999999999884  45777777421      111 111         1113445667889999


Q ss_pred             EEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        82 IID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      |+|+++.....+..+..+ ...+....+|+|++|.+++.+|+.+|..
T Consensus        81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            999987322233455555 4455677899999999999999998874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.27  E-value=3.5e-11  Score=114.72  Aligned_cols=104  Identities=25%  Similarity=0.419  Sum_probs=75.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHH----HHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSAL   75 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~----~~~~~~L   75 (611)
                      ++.+|+|+|+|||||||+++.|++.++  +.+++.|.+.                   ++.........    ..+...+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~   85 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV   85 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence            467899999999999999999999988  5567765542                   12222222222    3344455


Q ss_pred             HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..|..||+|+++....++..+... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        86 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~vi~l~~~~e~~~~R~~~R~~  135 (196)
T 2c95_A           86 NTSKGFLIDGYPREVQQGEEFERRIGQPT---LLLYVDAGPETMTQRLLKRGE  135 (196)
T ss_dssp             TTCSCEEEESCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHT
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHccCC
Confidence            578899999988887777666544 3333   589999999999999998864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.27  E-value=3.2e-11  Score=112.29  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC--------------
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN--------------   87 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn--------------   87 (611)
                      +|+|+|+|||||||+++.|++.++  +..++.|.+...... ....+ .....+..|..+|.|...              
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~-~~~~~-~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~   78 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKSG-NEKLF-EHFNKLADEDNVIIDRFVYSNLVYAKKFKDYS   78 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC--CCEEECCCHHHHTTC-HHHHH-HHHHHHTTCCSEEEESCHHHHHHHTTTBTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeeecCcccccchhH-HHHHH-HHHHHHHhCCCeEEeeeecchHHHHHHHHHhh
Confidence            799999999999999999999988  445888776543321 12222 234567889999999522              


Q ss_pred             -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (611)
Q Consensus        88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~  166 (611)
                       +....+..+...  ...+..+|+|++|.+++.+|+.+|.++      ....+.+.++.+.++.+.....+..+++..+.
T Consensus        79 ~~~~~~~~~l~~~--~~~~~~~i~l~~~~e~~~~R~~~r~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~  150 (173)
T 3kb2_A           79 ILTERQLRFIEDK--IKAKAKVVYLHADPSVIKKRLRVRGDE------YIEGKDIDSILELYREVMSNAGLHTYSWDTGQ  150 (173)
T ss_dssp             CCCHHHHHHHHHH--HTTTEEEEEEECCHHHHHHHHHHHSCS------CCCHHHHHHHHHHHHHHHHTCSSCEEEEETTT
T ss_pred             HhhHHHHHHHhcc--CCCCCEEEEEeCCHHHHHHHHHhcCCc------chhhhHHHHHHHHHHHHHhhcCCCEEEEECCC
Confidence             122222222222  112345899999999999999998542      22345666666666554443334455554432


Q ss_pred             hhHHHHHH
Q 007244          167 NDVQAALD  174 (611)
Q Consensus       167 ~evd~av~  174 (611)
                      ..++++..
T Consensus       151 ~~~~ev~~  158 (173)
T 3kb2_A          151 WSSDEIAK  158 (173)
T ss_dssp             SCHHHHHH
T ss_pred             CCHHHHHH
Confidence            34555444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.27  E-value=3.1e-11  Score=111.76  Aligned_cols=116  Identities=20%  Similarity=0.330  Sum_probs=80.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc-----C----CCCc----------HHHHHHHHHHHH--HCC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-----G----KSGT----------KVQCLTSASSAL--KKG   78 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~-----~----~~~~----------~~~~~~~~~~~L--~~G   78 (611)
                      .+|+|+|+|||||||+|+.| +.++  +.+++.|.+ +.     +    ....          ...+...+...+  ..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence            47999999999999999999 8888  445665443 21     1    0000          001224455666  677


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ..||+|+. ....++..+... .   ....+|+|++|.+++.+|+..|.+..   .....+++..++..
T Consensus        79 ~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~---~~~~~~~~~~r~~~  140 (179)
T 3lw7_A           79 DLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD---DSKEISELIRRDRE  140 (179)
T ss_dssp             SCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHHHH
T ss_pred             CeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Confidence            88999997 888888877766 4   34579999999999999999997531   12456777777644

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.25  E-value=2.6e-11  Score=115.86  Aligned_cols=105  Identities=21%  Similarity=0.392  Sum_probs=75.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHH----HHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSA   74 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~----~~~~~~   74 (611)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.                   ++.........    ..+...
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~   87 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG--FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS   87 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            3567999999999999999999999988  5567765542                   12222222222    233344


Q ss_pred             HHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        75 L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +..|..||+|+++....++..|... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        88 ~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~---~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           88 LGDTRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             TTSCSCEEEETCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHTCC
T ss_pred             cccCccEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHcCCC
Confidence            4568899999988888877766543 2222   488999999999999999865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.25  E-value=1.8e-11  Score=119.25  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.                   .+...........+...+..   +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG--IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER   79 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS--CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccC
Confidence            488999999999999999999998  4457764441                   22333444444556666654   78


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .+|+|+++....++..+..+ ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus        80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  128 (216)
T 3dl0_A           80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRR  128 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEE
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            89999988888888777766 4344333 58899999999999999994

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.25  E-value=3.1e-11  Score=116.52  Aligned_cols=111  Identities=15%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL   75 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L   75 (611)
                      ....+|.+|+|+|+|||||||+|+.|++.++.+  +++.|.+ +.                  +...........+.+.+
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~--~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~   92 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP--QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRL   92 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCC--EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCc--EEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            356678899999999999999999999998844  4776544 21                  12222222223333333


Q ss_pred             ---HCCCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 ---KKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ---~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         ..+..||+|+++.+..++..+..+ ...+. ...+|+|++|.+++.+|+.+|.+
T Consensus        93 ~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r  149 (201)
T 2cdn_A           93 NNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR  149 (201)
T ss_dssp             TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred             hcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence               346789999988888777766655 43332 23689999999999999999853

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.24  E-value=2.2e-11  Score=118.50  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.                   .+...........+.+.+..   +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK   79 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCC
Confidence            488999999999999999999998  4457765442                   12233333344556666654   77


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhcc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .+|+|+++....++..+..+ ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus        80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  128 (216)
T 3fb4_A           80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRW  128 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEE
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            89999988888888777665 4344333 58999999999999999994

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.23  E-value=5.6e-11  Score=116.45  Aligned_cols=107  Identities=17%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHH---
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALK---   76 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~---   76 (611)
                      ++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+ +                  .+...........+...+.   
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~   80 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP   80 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc
Confidence            456899999999999999999999998  556776544 2                  1222223333445555554   


Q ss_pred             -CCCcEEEecCCCCHHHHHHHHHh-CCCCCeE-EEEEEeCCHHHHHHHHHhccc
Q 007244           77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 -~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       .|..+|+|+.+....++..+..+ ...+..+ .+|+|++|.+++.+|+..|..
T Consensus        81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~  134 (220)
T 1aky_A           81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLI  134 (220)
T ss_dssp             GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCc
Confidence             46789999977777666655444 3333223 589999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.22  E-value=7e-11  Score=115.92  Aligned_cols=107  Identities=21%  Similarity=0.266  Sum_probs=74.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHHHHHHHHHHC---
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK---   77 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~~~~~~~L~~---   77 (611)
                      +..|+|+|+|||||||+|+.|++.++  +.+++.|.+..                   +.....+.....+..+|..   
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   82 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYG--LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC   82 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            45799999999999999999999998  56677755421                   1112222233455555554   


Q ss_pred             CCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 007244           78 GKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      |..||+|+.+....+...+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~  135 (217)
T 3be4_A           83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH  135 (217)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence            7889999987776666555433 22222 236899999999999999998753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.21  E-value=2.1e-10  Score=110.55  Aligned_cols=106  Identities=17%  Similarity=0.331  Sum_probs=74.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc------c--------------CCCCcHH----HHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------K--------------GKSGTKV----QCLTSAS   72 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~------~--------------~~~~~~~----~~~~~~~   72 (611)
                      ...+.+|+|+|+|||||||+++.|++.++  +.+++.|.+.      .              +......    .+...+.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   89 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   89 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            45578999999999999999999999988  5667766541      1              1111111    1224445


Q ss_pred             HHHHCC-CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           73 SALKKG-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        73 ~~L~~G-k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..+..| ..+|+|+.+.....+..+... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~---~~i~l~~~~e~~~~Rl~~R~~  143 (203)
T 1ukz_A           90 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGK  143 (203)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred             hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHhccc
Confidence            566777 579999987776666544433 3322   488999999999999998864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.21  E-value=5.2e-11  Score=112.87  Aligned_cols=104  Identities=19%  Similarity=0.293  Sum_probs=74.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHCCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKKGK   79 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~Gk   79 (611)
                      ++.+|+|+|+|||||||+++.|++.++  +.+++.|.+.                   ++...........+...+..+ 
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER-   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC-
Confidence            467899999999999999999999888  5668776432                   112222223334455555544 


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                       +|+|+++....++..+..+ ...+. .-.+|+|++|.+++.+|+..|.
T Consensus        80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence             9999988887776665554 44443 3368999999999999999885

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.20  E-value=3.1e-11  Score=117.15  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEeecchhc----cCCCCcHH-------
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTIN----KGKSGTKV-------   65 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~---------------------~~~~Is~D~i~----~~~~~~~~-------   65 (611)
                      .++.+|+|+|+|||||||+++.|++.++.                     .+..++.|.+.    .+.+..+.       
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            45678999999999999999999988742                     22233333332    12221110       


Q ss_pred             -HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCC-CeEEEEEEe-CCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244           66 -QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (611)
Q Consensus        66 -~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~-~~v~vV~Ld-~p~e~~~~Rl~~R~~~~g~~~~~vpeevi  141 (611)
                       .....+...+..|+.||+|..      ...+..+ ...+ ..+.+||++ +|.+++.+|+.+|..       ..++.+.
T Consensus        90 ~~~~~~i~~~l~~g~~vi~d~~------~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~-------~~~~~i~  156 (204)
T 2qor_A           90 GTLKSEYDLAVGEGKICLFEMN------INGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT-------EKPEEIN  156 (204)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECC------HHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT-------SCHHHHH
T ss_pred             cCCHHHHHHHHHcCCeEEEEEC------HHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC-------CCHHHHH
Confidence             001356678889999999972      2233333 2222 134678887 899999999998865       3445555


Q ss_pred             HHHHhhccCCC--ccCCccEEEEcCChhhHHHHHHH
Q 007244          142 NRMLQKKELPK--LSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       142 ~rm~~~~e~P~--~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      .++.....+..  ..+.|+.++++.   ++++++..
T Consensus       157 ~rl~~~~~~~~~~~~~~~d~vi~n~---~~e~~~~~  189 (204)
T 2qor_A          157 KRMQELTREMDEADKVGFNYFIVND---DLARTYAE  189 (204)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEECS---SHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCcEEEECc---CHHHHHHH
Confidence            56665432221  345677776553   44444443

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.18  E-value=1.5e-10  Score=128.84  Aligned_cols=130  Identities=16%  Similarity=0.240  Sum_probs=88.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC---C------CC---cH-----HHH----HHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---K------SG---TK-----VQC----LTSAS   72 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~---~------~~---~~-----~~~----~~~~~   72 (611)
                      ..+|.+|+|+|+|||||||+|++|++.++   ....+++.|.++..   .      +.   ..     ..+    +..+.
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~  111 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK  111 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999998874   34556787776421   0      11   11     111    22333


Q ss_pred             HHH--HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           73 SAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        73 ~~L--~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ..|  ..|..||+|+||.....|..++.+ +..++.+.++++.++ .+++.+|+..|......+.+..++++++.+.+
T Consensus       112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~  189 (520)
T 2axn_A          112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMK  189 (520)
T ss_dssp             HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHH
T ss_pred             HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHH
Confidence            444  568899999999999999999988 777877888888887 56666777666542111222356666655543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.16  E-value=2.2e-10  Score=112.98  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK--GKS   80 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~--Gk~   80 (611)
                      +|+|+|+|||||||+++.|++.++  +.+++.|.+ +.                  +.......+...+..+|..  |..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCe
Confidence            689999999999999999999988  556776554 21                  1222233344667777777  999


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ||+|+.+....++..+..+ ...+. .-.+|+|++|.+++.+|+..|..
T Consensus        80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~  128 (223)
T 2xb4_A           80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRI  128 (223)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCE
T ss_pred             EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccC
Confidence            9999977776666655443 22222 23589999999999999999964

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=122.50  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=85.2

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      ......++.|++.++++........|++     .  .|.++++.|.++-|.+.|.|..+.....+.+...-.+|+.+|.+
T Consensus        74 AI~~aaG~~L~~ec~~~~~~~~~~~G~a-----~--iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e  146 (221)
T 3q71_A           74 SLLEKAGPELQEELDTVGQGVAVSMGTV-----L--KTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITES  146 (221)
T ss_dssp             HHHHHHCTHHHHHHHHHHHTSCCCTTCE-----E--EEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHhccCCCCCCeE-----E--EEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence            3445567788888877653222222332     1  46788899999999999999763322223444455668899999


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~  312 (611)
                      ++++|||||+||||+||||.++||+|++++|.+|+++++
T Consensus       147 ~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~  185 (221)
T 3q71_A          147 LSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQ  185 (221)
T ss_dssp             TTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999873

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.13  E-value=1.9e-11  Score=119.42  Aligned_cols=144  Identities=16%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEeecchhc----cCCCCcHHH------
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTIN----KGKSGTKVQ------   66 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---------------------~~Is~D~i~----~~~~~~~~~------   66 (611)
                      +++.+|+|+||+||||||+++.|+..++..+                     ..++.+.+.    .+.+..+..      
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence            4578999999999999999999998775311                     111211111    011111100      


Q ss_pred             --HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        67 --~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                        ....+.+.+..|+.+|+|.      ++.....+ ......+.+++++++.+++.+|+.+|..       +.++++..|
T Consensus        86 g~~~~~i~~~l~~g~~vild~------~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~-------~~~e~i~~R  152 (208)
T 3tau_A           86 GTPLEYVEEKLAAGVDIFLEI------EVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT-------ESMEVVEER  152 (208)
T ss_dssp             EEEHHHHHHHHHTTCCEEEEC------CHHHHHHHHHHCTTSEEEEEECTTTTTSSCC--------------CCHHHHHH
T ss_pred             CCcHHHHHHHHHcCCeEEEEe------eHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence              0145678899999999998      55555555 4444444454555668999999999976       345667777


Q ss_pred             HHhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244          144 MLQKKELPKLSEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       144 m~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      +.....+-.....||.++++++   ++++...+.
T Consensus       153 l~~~~~e~~~~~~~d~vivN~~---~~~~~~~l~  183 (208)
T 3tau_A          153 METAKKEIEMMASYDYAVVNDV---VANAVQKIK  183 (208)
T ss_dssp             HHHHHHHHHHGGGSSEEEECSS---HHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCEEEECcC---HHHHHHHHH
Confidence            7665533333456888887753   555555444

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.07  E-value=6.4e-10  Score=109.03  Aligned_cols=106  Identities=25%  Similarity=0.304  Sum_probs=70.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHH--
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK--   76 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~--   76 (611)
                      .++.+|+|+|+|||||||+++.|++.++  +.+++.|.+.                   ++.......+...+...+.  
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~   80 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP   80 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhc
Confidence            3456899999999999999999999998  5567765431                   1223333333333333332  


Q ss_pred             --CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 --KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 --~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                        .+..+|+|++.....++..+...  ....-.+|+|++|.+++.+|+..|..
T Consensus        81 ~~~~~~~vidg~~~~~~~~~~l~~~--~~~~~~vi~L~~~~~~~~~R~~~r~~  131 (222)
T 1zak_A           81 DAQENGWLLDGYPRSYSQAMALETL--EIRPDTFILLDVPDELLVERVVGRRL  131 (222)
T ss_dssp             HHHHTCEEEESCCCSHHHHHHHHTT--TCCCSEEEEEECCHHHHHHHHTTEEE
T ss_pred             cccCCcEEEECCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcCCc
Confidence              24568889977666555444222  11122589999999999999998864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.06  E-value=1.3e-09  Score=109.08  Aligned_cols=102  Identities=21%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      -+.|.|+|||||||+|+.|++.++  +.+|+.+++ +                  .+...+.+.+...+.++|..   +.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~   87 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFG--IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN   87 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhC--CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence            478999999999999999999998  455876433 2                  23333444455777777765   35


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .+|+|+.+.+..+...+... ...   -.+|+|++|.+++.+|+..|..+
T Consensus        88 g~ILDGfPRt~~Qa~~L~~~~~~~---d~VI~Ldvp~e~l~~Rl~~R~~~  134 (230)
T 3gmt_A           88 GYLFDGFPRTIAQADAMKEAGVAI---DYVLEIDVPFSEIIERMSGRRTH  134 (230)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCC---SEEEEECCCHHHHHHHHHTEEEE
T ss_pred             CeEecCCCCcHHHHHHHHHhCCCc---cEEEEEeCCHHHHHHHHHcCCcc
Confidence            79999988888777766443 222   24899999999999999999764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.05  E-value=1.4e-09  Score=106.03  Aligned_cols=102  Identities=22%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHHCC---C
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKKG---K   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~~G---k   79 (611)
                      .|+|+|+|||||||+++.|++.++.  .+++.|.+ +.                  +.......+...+...+..+   .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~--~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   79 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI--PQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN   79 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC--CEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC--eEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence            4899999999999999999999884  45776443 21                  11222333445566666553   5


Q ss_pred             cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+|+|+++....+...+... .. ..-.+|+|++|.+++.+|+..|..
T Consensus        80 ~~i~dg~~~~~~~~~~l~~~-~~-~~d~vi~l~~~~e~~~~R~~~R~~  125 (214)
T 1e4v_A           80 GFLLDGFPRTIPQADAMKEA-GI-NVDYVLEFDVPDELIVDRIVGRRV  125 (214)
T ss_dssp             CEEEESCCCSHHHHHHHHHT-TC-CCSEEEEEECCHHHHHHHHHTEEE
T ss_pred             CEEEeCCCCCHHHHHHHHhc-CC-CCCEEEEEECCHHHHHHHHHCCcc
Confidence            79999977666555544332 11 122589999999999999998864

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.03  E-value=6.5e-11  Score=117.26  Aligned_cols=111  Identities=8%  Similarity=-0.048  Sum_probs=81.5

Q ss_pred             CCchhhhhhHHHHHHhhcC-CCCCCCCCCCCCCCCCCcccccccccccccceeecccccccc-cccCCCCcchhhhcccC
Q 007244          194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVASVNQNG  271 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~  271 (611)
                      ......++.|++.++++-. ......|++     .  .|.++++.|.++-|.+-|.|..+.. ...+.+...-.+|+..|
T Consensus        71 AI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A  143 (214)
T 3q6z_A           71 ALSKAAGPELQADCDQIVKREGRLLPGNA-----T--ISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLA  143 (214)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCCCTTCE-----E--EEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHcCCCCCCeE-----E--EEcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence            4445557777777666521 011111322     1  3667889999999999999976321 11233444556788999


Q ss_pred             CCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007244          272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (611)
Q Consensus       272 ~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~  311 (611)
                      .+++++|||||+||||+||||.++||+|++++|++|++++
T Consensus       144 ~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~  183 (214)
T 3q6z_A          144 EKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK  183 (214)
T ss_dssp             HHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred             HHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=6.4e-10  Score=107.42  Aligned_cols=103  Identities=13%  Similarity=0.104  Sum_probs=66.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----c---------HHHHHHHHHHHHHCCCcEEEec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----T---------KVQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----~---------~~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      +..+|+|+|+|||||||+++.|++.++..+  ++.|.+.....+    .         .......+...+..+..+||+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~--i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~  101 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPF--IDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVIST  101 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCE--EEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCE--EcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEEC
Confidence            346899999999999999999999998544  777766321111    0         0111233444555677888884


Q ss_pred             C---CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH-hccccc
Q 007244           86 C---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHE  129 (611)
Q Consensus        86 t---nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~-~R~~~~  129 (611)
                      .   ......+..+.   ..   ..+|||++|.+++.+|+. .|..++
T Consensus       102 ggg~~~~~~~~~~l~---~~---~~vi~L~~~~e~l~~Rl~~~~~~Rp  143 (199)
T 3vaa_A          102 GGGAPCFYDNMEFMN---RT---GKTVFLNVHPDVLFRRLRIAKQQRP  143 (199)
T ss_dssp             CTTGGGSTTHHHHHH---HH---SEEEEEECCHHHHHHHHHHTGGGCG
T ss_pred             CCcEEccHHHHHHHH---cC---CEEEEEECCHHHHHHHHhcCCCCCC
Confidence            3   33333333331   11   248999999999999998 554443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.02  E-value=5e-10  Score=106.08  Aligned_cols=145  Identities=23%  Similarity=0.336  Sum_probs=107.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc------CCCCc----HHHHHHHHHHHHHCCCcEEEecCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSGT----KVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~------~~~~~----~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      +++.++.|+|++|||||||++.+...    ...++.|.++.      +....    +..+...+...+..|..+++|.++
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   82 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFKP----TEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATN   82 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSCG----GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHccC----CeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            45789999999999999999986532    23366665531      11111    122334556677889999999999


Q ss_pred             CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCC--C-ccCCccEEEEc
Q 007244           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP--K-LSEGFSRITLC  163 (611)
Q Consensus        88 l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P--~-~~EgFd~V~vv  163 (611)
                      .....++.++.+ +.......+++||-|...|-.|+..|..+      .++++++.++...+...  . ..+|+..|++.
T Consensus        83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~------~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vt  156 (171)
T 4gp7_A           83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR------QVEEYVIRKHTQQMKKSIKGLQREGFRYVYIL  156 (171)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC------CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEe
Confidence            998888888888 77778888999999999999999999864      57889998887764322  2 25689888888


Q ss_pred             CChhhHHHH
Q 007244          164 QNENDVQAA  172 (611)
Q Consensus       164 ~~~~evd~a  172 (611)
                      ++.++++.+
T Consensus       157 H~~~~~~~~  165 (171)
T 4gp7_A          157 NSPEEVEEV  165 (171)
T ss_dssp             CSHHHHHHE
T ss_pred             CCHHHhhhh
Confidence            887776643

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.02  E-value=8.2e-11  Score=113.96  Aligned_cols=112  Identities=11%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             CchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          195 PDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      .....++.+.+-++++-.. .....|++     .  .|.+.++.|.++-|.+.|.|..+.....+.+...-.+|+..+.+
T Consensus        38 I~~aaG~~l~~e~~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~  110 (184)
T 1spv_A           38 IHRAAGPALLDACLKVRQQQGDCPTGHA-----V--ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAA  110 (184)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHCSCCTTCE-----E--EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHhcCCCCCCCE-----E--EeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHH
Confidence            3344456676666655210 11111222     1  35667888999999999988653222223334455678899999


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (611)
                      ++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus       111 ~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~  150 (184)
T 1spv_A          111 NSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL  150 (184)
T ss_dssp             TTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             hCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999998654

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.01  E-value=1.5e-10  Score=113.04  Aligned_cols=110  Identities=6%  Similarity=0.071  Sum_probs=81.1

Q ss_pred             CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  272 (611)
                      ......++.+.+-++++... .....|++     .  .|.+.++.|.++-|.+.|.|..  ....+.+...-.+|+..+.
T Consensus        56 aI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~~y~~~L~~a~  126 (193)
T 2xd7_A           56 ALEKAGGKEFLETVKELRKSQGPLEVAEA-----A--VSQSSGLAAKFVIHCHIPQWGS--DKCEEQLEETIKNCLSAAE  126 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSCCTTCE-----E--EEECTTSSSSEEEEEECCCTTS--TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCCCCe-----E--EeeCCCCCCCEEEEECCCcCCC--cchHHHHHHHHHHHHHHHH
Confidence            34455567777777665221 11111222     1  3667788899999999999864  3223334445567889999


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~  312 (611)
                      +++++|||||+||||+||||.++||+++++++++|+++++
T Consensus       127 ~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~  166 (193)
T 2xd7_A          127 DKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSS  166 (193)
T ss_dssp             HTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.00  E-value=2e-09  Score=106.65  Aligned_cols=110  Identities=19%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK   77 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~   77 (611)
                      ...+..|+|+|+|||||||+|+.|++.++  +.+++.|.+.                   .+.....+.....+..++..
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~   90 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLET   90 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence            44557899999999999999999999998  5567765431                   11222222233445555543


Q ss_pred             ---CCcEEEecCCCCHHHHHHHHHh-CCCC-CeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           78 ---GKSVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 ---Gk~VIID~tnl~~~~R~~~~~l-~~~~-~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                         +..+|+|+.+.+..++..+..+ ...+ ..-.+|+|++|.+++.+|+..|..+
T Consensus        91 ~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~  146 (233)
T 1ak2_A           91 PPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH  146 (233)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred             ccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence               4579999977777666655443 2211 2235899999999999999999654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.99  E-value=3e-09  Score=101.24  Aligned_cols=107  Identities=19%  Similarity=0.157  Sum_probs=76.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCCC-----CcHH--HHH----HHHHHHHHCCCcEEE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-----GTKV--QCL----TSASSALKKGKSVFL   83 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~~-----~~~~--~~~----~~~~~~L~~Gk~VII   83 (611)
                      .++.+|+|+|+|||||||+++.|++.++   ..+..++.|.++....     ...+  ..+    ..+...+..|..||+
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~   90 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVIC   90 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4578999999999999999999988764   3355678787754321     1111  111    122333567778889


Q ss_pred             ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      |+++.....|..+..+ ...+.+..+|||++|.+++.+|+..
T Consensus        91 d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           91 SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            9988887778777776 5555667899999999999999753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.99  E-value=3e-09  Score=104.70  Aligned_cols=105  Identities=20%  Similarity=0.205  Sum_probs=71.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK-   77 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~-   77 (611)
                      .++.+|+|+|+|||||||+++.|++.++  +.+++.|.+.                   .+...........+...+.. 
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~   82 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFE--LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL   82 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSS--SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcC--CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            3457899999999999999999999988  5567765431                   12222333333445555653 


Q ss_pred             -CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        78 -Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                       +..+|+|+.+....+...+..+...+   .+|+|++|.+++.+|+..|..
T Consensus        83 ~~~~~vid~~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~~~R~~~R~~  130 (227)
T 1zd8_A           83 TQYSWLLDGFPRTLPQAEALDRAYQID---TVINLNVPFEVIKQRLTARWI  130 (227)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHTTSCCC---EEEEEECCHHHHHHHHTCEEE
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHcCcC
Confidence             67899999777655544333222222   489999999999999998853

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.99  E-value=3.4e-09  Score=101.69  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=78.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--------cC--CC-CcHH---HH-----------------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------KG--KS-GTKV---QC-----------------   67 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--------~~--~~-~~~~---~~-----------------   67 (611)
                      ++.+|.|+||+||||||+++.|...++  .+.++...+.        .+  .. ....   ..                 
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY   83 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence            457899999999999999999988764  2223221110        00  00 0000   00                 


Q ss_pred             ---HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           68 ---LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        68 ---~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                         ...+.+.+..|..+|+|.      .+..+..+ ........++++++|.+++.+|+.+|...       ..+.+..|
T Consensus        84 ~~~~~~i~~~l~~g~~vi~d~------~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~-------~~~~i~~r  150 (205)
T 3tr0_A           84 GTEKDWVLRQLKAGRDVLLEI------DWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQD-------DTAIIEQR  150 (205)
T ss_dssp             EEEHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTS-------CSSTHHHH
T ss_pred             cchHHHHHHHHHcCCeEEEEE------CHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCC-------CHHHHHHH
Confidence               135677889999999997      34444444 33333334445566799999999999762       23344455


Q ss_pred             HHhhccCCCccCCccEEEEcCC
Q 007244          144 MLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus       144 m~~~~e~P~~~EgFd~V~vv~~  165 (611)
                      +..+.........||.|+++++
T Consensus       151 l~~~~~~~~~~~~~d~vi~n~~  172 (205)
T 3tr0_A          151 LALAREEMAHYKEFDYLVVNDN  172 (205)
T ss_dssp             HHHHHHHHTTGGGCSEEEECSS
T ss_pred             HHHHHHHHhcccCCCEEEECCC
Confidence            5554333333456788877653

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=98.98  E-value=1.6e-10  Score=112.83  Aligned_cols=120  Identities=9%  Similarity=0.092  Sum_probs=85.0

Q ss_pred             CCchhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  272 (611)
                      ......++.+.+-++++... .....|++     .  .|.+.++.|.++-|.+.|.|..  ....+.+...-.+|+..+.
T Consensus        53 aI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~--~~~~~~L~~~y~~~L~~a~  123 (193)
T 1yd9_A           53 TLEKKGGKEFVEAVLELRKKNGPLEVAGA-----A--VSAGHGLPAKFVIHCNSPVWGS--DKCEELLEKTVKNCLALAD  123 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCCTTCE-----E--EEECTTSSSSEEEEECCCCTTS--TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCCCCE-----E--EecCCCCCCCEEEEeCCCCcCC--cchHHHHHHHHHHHHHHHH
Confidence            34455567777777654221 11111222     1  3667788999999999999864  3223334445667889999


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC--Ce-EEEEeecC
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--NA-RLVLVDLT  322 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~--~i-~iV~vd~s  322 (611)
                      +++++|||||+||||+||||.++||+++++++++|+++++  .+ +++++.++
T Consensus       124 ~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l~~V~fv~~~  176 (193)
T 1yd9_A          124 DRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFD  176 (193)
T ss_dssp             HTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCCCEEEEECCS
T ss_pred             HhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcCEEEEEECC
Confidence            9999999999999999999999999999999999998743  23 45554333

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.96  E-value=1.3e-09  Score=103.24  Aligned_cols=146  Identities=10%  Similarity=0.108  Sum_probs=81.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----cH---------HHHHHHHHHHHHCCCcEEEec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----TK---------VQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----~~---------~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ++.+|+|+|+|||||||+++.|++.++..  +++.|.+.....+    ..         ......+...+.....+||+.
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~--~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~   81 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI--LYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILAT   81 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCC--EEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCC--EEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEec
Confidence            35689999999999999999999999844  5887777432111    00         011123333444444555554


Q ss_pred             ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH--HhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEE
Q 007244           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS--VKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (611)
Q Consensus        86 ---tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl--~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V  160 (611)
                         ..+....+..+..   .+   .+|||++|.+++.+|+  ..|..++. .....+.+.+..++...++ .+.+..+ +
T Consensus        82 gg~~~~~~~~~~~l~~---~~---~vi~L~~~~e~l~~Rl~~~~~~~rp~-~~~~~~~~~l~~~~~~r~~-~y~~~ad-~  152 (185)
T 3trf_A           82 GGGVVLDEKNRQQISE---TG---VVIYLTASIDTQLKRIGQKGEMRRPL-FIKNNSKEKLQQLNEIRKP-LYQAMAD-L  152 (185)
T ss_dssp             CTTGGGSHHHHHHHHH---HE---EEEEEECCHHHHHHHHHCCTTCSSCC-CCCHHHHHHHHHHHHHHHH-HHHHHCS-E
T ss_pred             CCceecCHHHHHHHHh---CC---cEEEEECCHHHHHHHHhhcCCCCCCC-CCCCCHHHHHHHHHHHHHH-HHhhcCC-E
Confidence               3455555544422   12   5899999999999999  55443321 1111124556665555432 2222133 4


Q ss_pred             EEcCChhhHHHHHHH
Q 007244          161 TLCQNENDVQAALDT  175 (611)
Q Consensus       161 ~vv~~~~evd~av~~  175 (611)
                      ++..+...+++++..
T Consensus       153 ~Idt~~~~~~e~~~~  167 (185)
T 3trf_A          153 VYPTDDLNPRQLATQ  167 (185)
T ss_dssp             EEECTTCCHHHHHHH
T ss_pred             EEECCCCCHHHHHHH
Confidence            444333345555443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.94  E-value=2e-09  Score=101.96  Aligned_cols=119  Identities=19%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-------------HHHHH-HHHHHHHHCCCcEEEec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCL-TSASSALKKGKSVFLDR   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-------------~~~~~-~~~~~~L~~Gk~VIID~   85 (611)
                      +.+|+|+|+|||||||+|+.|++.++.+  +++.|.+.....+.             ..... ..+...+.....||.++
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~--~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g   79 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVG--LLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLG   79 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCC--EEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC--EEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecC
Confidence            3469999999999999999999999844  58888764211110             00111 22333334333444433


Q ss_pred             C--CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           86 C--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        86 t--nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      .  .+....|..+   + .+   .+|+|++|.+++.+|+.+|..++. .......+.+..++..+
T Consensus        80 ~~~v~~~~~~~~l---~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~-~~~~~~~~~i~~~~~~r  136 (184)
T 2iyv_A           80 GGAVTSPGVRAAL---A-GH---TVVYLEISAAEGVRRTGGNTVRPL-LAGPDRAEKYRALMAKR  136 (184)
T ss_dssp             TTGGGSHHHHHHH---T-TS---CEEEEECCHHHHHHHTTCCCCCSS-TTSCCHHHHHHHHHHHH
T ss_pred             CcEEcCHHHHHHH---c-CC---eEEEEeCCHHHHHHHHhCCCCCCC-ccCCCHHHHHHHHHHHH
Confidence            2  2333444333   3 33   388999999999999998865321 11233556666665543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.94  E-value=7.9e-09  Score=97.83  Aligned_cols=120  Identities=17%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh-------------ccCCCCcHH-----------HHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI-------------NKGKSGTKV-----------QCLTSASSA   74 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i-------------~~~~~~~~~-----------~~~~~~~~~   74 (611)
                      +|+|+|+|||||||+++.|++.+   +..+  ++.|..             .++......           .+...+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~--i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV--SLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCE--EEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999987   6444  444321             122221110           011234456


Q ss_pred             HHCCCcEEEecC------------CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244           75 LKKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (611)
Q Consensus        75 L~~Gk~VIID~t------------nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi  141 (611)
                      +..|..||+|..            .........+..+ ......-.+|+|++|.+++.+|+.+|...      + ..+..
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~------~-~~~~~  152 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF------E-NKEFL  152 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCC------C-CHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCcc------c-hHHHH
Confidence            788999999952            2222222222222 21112235899999999999999865431      2 45566


Q ss_pred             HHHHhhccC
Q 007244          142 NRMLQKKEL  150 (611)
Q Consensus       142 ~rm~~~~e~  150 (611)
                      .++...++.
T Consensus       153 ~~~~~~~~~  161 (195)
T 2pbr_A          153 EKVRKGFLE  161 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555443

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=98.94  E-value=3.5e-10  Score=109.48  Aligned_cols=99  Identities=14%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      ......++.|.+-++++..- .  .+++     .  .|.+.++.|.++-|.+.|.+          +...-.+|+..+.+
T Consensus        56 aI~~aaG~~l~~ec~~~~~~-~--~G~a-----~--iT~~~~L~~k~VIH~vgP~~----------L~~~y~~~L~~a~~  115 (183)
T 4abl_A           56 AILECAGQNVERECSQQAQQ-R--KNDY-----I--ITGGGFLRCKNIIHVIGGND----------VKSSVSSVLQECEK  115 (183)
T ss_dssp             HHHHHHCHHHHHHHHHHHHH-S--CCSE-----E--EEECTTSBSSEEEEEETTSC----------HHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHhcCC-C--CCce-----E--EecCCCCCCCEEEEeCcHHH----------HHHHHHHHHHHHHH
Confidence            45566678888888776421 1  1222     1  36778899999999887643          33455568899999


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~  312 (611)
                      ++++|||||+||||+||||.++||+++++++++|+++++
T Consensus       116 ~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~  154 (183)
T 4abl_A          116 KNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGS  154 (183)
T ss_dssp             TTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999864

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=98.92  E-value=3.9e-10  Score=113.24  Aligned_cols=110  Identities=9%  Similarity=0.060  Sum_probs=81.6

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeeccccc-ccccccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDA-AGEEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~  272 (611)
                      .....+++.+.+-+++++. .  ..|++     .  .|.+.++.|.++-|.+.|.|.. ........+...-.+|+.+|.
T Consensus        96 AI~~aaG~~l~~ec~~~g~-~--~~G~a-----~--iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~  165 (235)
T 2x47_A           96 CIHRAAGPLLTDECRTLQS-C--KTGKA-----K--ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLL  165 (235)
T ss_dssp             HHHHHHCHHHHHHHHTSCC-C--CBTCE-----E--EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHhCC-C--CCCce-----E--EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHH
Confidence            3445556777777766522 1  11222     1  3667788999999999998853 112223344445667889999


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (611)
                      +++++|||||+||||+||||.++||+|+++++++|+++++.
T Consensus       166 e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~  206 (235)
T 2x47_A          166 EHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKD  206 (235)
T ss_dssp             HTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999987643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.89  E-value=9.5e-09  Score=100.08  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccCCC----Cc-H--HH----HHHHHHHHHHCCCc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS----GT-K--VQ----CLTSASSALKKGKS   80 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~~~----~~-~--~~----~~~~~~~~L~~Gk~   80 (611)
                      ...++.+|+|+|+|||||||+++.|.+.++    ..+.+++.|.++....    .. .  ..    +...+...+..|..
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~  100 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSI  100 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCE
Confidence            346678999999999999999999988654    3477788887764211    11 1  11    22334567788999


Q ss_pred             EEEecCCCCHHHHHHHHHh-C------CCCCeEEEEEEeCCHHHHHHHH
Q 007244           81 VFLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~------~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ||+|........|..+..+ .      ..+.+..+|+|++|.+++.+|+
T Consensus       101 VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A          101 AITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             EEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            9999655445666666665 4      3345678999999999999995

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.89  E-value=3.8e-09  Score=106.54  Aligned_cols=127  Identities=12%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc--cCC----------------------------CCcHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------------SGTKVQCLTS   70 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~--~~~----------------------------~~~~~~~~~~   70 (611)
                      .+|+|+|+|||||||+|+.|++.++..  +++.|.+.  .+.                            ......+...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~--~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~   79 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWP--VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR   79 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCC--EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCe--EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence            479999999999999999999998844  46666541  110                            0111222222


Q ss_pred             HH---HHHHCCCcEEEecCCCCHHHHHHHHHhCC----CCCeEEEEEEeCCH-HHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           71 AS---SALKKGKSVFLDRCNLEREQRTDFVKLGG----PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        71 ~~---~~L~~Gk~VIID~tnl~~~~R~~~~~l~~----~~~~v~vV~Ld~p~-e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                      +.   +.+..|..+|+++...  .....++  ..    .++.+.++|+++|. +++.+|+.+|....- .....++.+++
T Consensus        80 ~~~~i~~~~~g~~vIl~gg~~--~~~~~~~--~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml-~~~~~~~~~l~  154 (253)
T 2ze6_A           80 LIFEVDWRKSEEGLILEGGSI--SLLNCMA--KSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMF-AIREDRPSLLE  154 (253)
T ss_dssp             HHHHHHTTTTSSEEEEEECCH--HHHHHHH--HCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCSSSCCHHH
T ss_pred             HHHHHHHHhCCCCeEEeccHH--HHHHHHH--hcccccccCceEEEEecchhHHHHHHHHHHHHHHHH-hcCcccchHHH
Confidence            33   4446788888887432  1222221  33    55677899999997 999999999976310 01134456777


Q ss_pred             HHHhhccCCCcc
Q 007244          143 RMLQKKELPKLS  154 (611)
Q Consensus       143 rm~~~~e~P~~~  154 (611)
                      .+...++.|...
T Consensus       155 e~~~~~~~p~~~  166 (253)
T 2ze6_A          155 ELAELWNYPAAR  166 (253)
T ss_dssp             HHHHHHTSTTHH
T ss_pred             HHHHhcCCcchH
Confidence            888888777654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.88  E-value=2e-08  Score=96.90  Aligned_cols=104  Identities=21%  Similarity=0.238  Sum_probs=76.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC-----CCc--HHH----HHHHHHHHHHCCCcEE
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SGT--KVQ----CLTSASSALKKGKSVF   82 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~-----~~~--~~~----~~~~~~~~L~~Gk~VI   82 (611)
                      ..++.+|+|+|+|||||||+++.|+..+   +...+.++.|.++...     +..  ...    ....+......|..+|
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  101 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICI  101 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceEE
Confidence            4678899999999999999999999877   4333368888775321     111  111    1133444556788899


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ++..+..+..|..+..+ .  +..+..|||++|.+++.+|+
T Consensus       102 ~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A          102 ASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             EECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred             EecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence            98888888888888777 4  33567899999999999997

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.86  E-value=1.6e-08  Score=100.67  Aligned_cols=158  Identities=15%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec-----------chhccCC-CCcHHH-HH----------HH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-----------DTINKGK-SGTKVQ-CL----------TS   70 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~-----------D~i~~~~-~~~~~~-~~----------~~   70 (611)
                      ...++.+|+|.|+|||||||+++.|.+.++.  .+.....           +.+.++. ...... ++          ..
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~  101 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLK  101 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4457789999999999999999999998762  2221110           1112222 121111 11          11


Q ss_pred             HHHHHHCCCcEEEe----------cC--CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCH
Q 007244           71 ASSALKKGKSVFLD----------RC--NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA  137 (611)
Q Consensus        71 ~~~~L~~Gk~VIID----------~t--nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vp  137 (611)
                      +..+|..|..||+|          +.  ++.......+..+ .....+-.+|+|++|.+++.+|+.+|..... +.....
T Consensus       102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d-r~e~~~  180 (229)
T 4eaq_A          102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN-RLDQED  180 (229)
T ss_dssp             CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC------CCCHHH
T ss_pred             HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc-chhhhh
Confidence            24567889999999          43  3444444444334 3222334688999999999999999864211 111124


Q ss_pred             HHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          138 AAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       138 eevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      .+..+++...+......+. ..+++++....++++...
T Consensus       181 ~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eev~~~  217 (229)
T 4eaq_A          181 LKFHEKVIEGYQEIIHNES-QRFKSVNADQPLENVVED  217 (229)
T ss_dssp             HHHHHHHHHHHHHHTTTCT-TTEEEEETTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHH
Confidence            4556666655543332222 134444444555555543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.86  E-value=4.2e-08  Score=93.32  Aligned_cols=108  Identities=21%  Similarity=0.218  Sum_probs=73.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc----CCCCcH----------HHHHHHHHHHHHCCCcEEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----GKSGTK----------VQCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~----~~~~~~----------~~~~~~~~~~L~~Gk~VIID   84 (611)
                      |+.+++|+|+|||||||+++.|+...+ ..+.++.|.+..    +....+          ..+...+...+..+..+|+|
T Consensus         1 mg~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild   79 (189)
T 2bdt_A            1 MKKLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLD   79 (189)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence            356899999999999999999988654 235688777642    111111          11223344455677889999


Q ss_pred             cCCCCHHHHHHHHHh-C--CCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           85 RCNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l-~--~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .. .....+..+..+ +  ..+..+.+++|++|.+++.+|...|...
T Consensus        80 ~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d  125 (189)
T 2bdt_A           80 YI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (189)
T ss_dssp             SC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             ec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence            85 455555555444 3  3344667888999999999999988653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.85  E-value=1.8e-08  Score=100.99  Aligned_cols=121  Identities=17%  Similarity=0.223  Sum_probs=72.9

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC--------eEEeecchhccCCCC-----------------c--HHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTINKGKSG-----------------T--KVQC   67 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~--------~~~Is~D~i~~~~~~-----------------~--~~~~   67 (611)
                      ....++.+|.|+|+|||||||+|+.|++.++.+        ..+++.|.+......                 .  ...+
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l   96 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELI   96 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHH
Confidence            455678899999999999999999999988743        236888888542110                 0  0111


Q ss_pred             HHHHHHHHH------------------------CCCcEEEecCCCC-HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHH
Q 007244           68 LTSASSALK------------------------KGKSVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        68 ~~~~~~~L~------------------------~Gk~VIID~tnl~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ...+.....                        ....||+|+..+. ......+     .+   .+|||++|.+++++|+
T Consensus        97 ~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~-----~d---~vi~l~~~~e~~~~R~  168 (252)
T 1uj2_A           97 LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL-----FQ---MKLFVDTDADTRLSRR  168 (252)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH-----CS---EEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHh-----cC---eeEEEeCCHHHHHHHH
Confidence            233333221                        2346899996653 2222222     22   3889999999999999


Q ss_pred             HhcccccCCCCCCCHHHHHHHHHh
Q 007244          123 VKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus       123 ~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ..|.....   +...+++..++..
T Consensus       169 ~~R~~~~r---g~~~e~i~~~~~~  189 (252)
T 1uj2_A          169 VLRDISER---GRDLEQILSQYIT  189 (252)
T ss_dssp             HHHHHHHS---CCCHHHHHHHHHH
T ss_pred             HHHHHhhh---CCCHHHHHHHHHH
Confidence            98852111   1345555555443

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.84  E-value=1.8e-08  Score=114.03  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=81.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCC----c---HHH----HHHHHHHHHHCCCcEEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----T---KVQ----CLTSASSALKKGKSVFLD   84 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~----~---~~~----~~~~~~~~L~~Gk~VIID   84 (611)
                      ++.+|+|+|+|||||||+|+.|++.+   +..++.++.|.++.+...    .   ..+    +...+...+..|..||.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d  130 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS  130 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            68899999999999999999999988   777878888887653211    1   111    123334556788888888


Q ss_pred             cCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                      ........|..+..+ +..+.+..+|||++|.++|.+|+.+
T Consensus       131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            666666678888887 7667778899999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.80  E-value=1.2e-08  Score=98.33  Aligned_cols=148  Identities=15%  Similarity=0.081  Sum_probs=80.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---Eeecc------------hhccCCCCcH---HHHH--------HHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---RICQD------------TINKGKSGTK---VQCL--------TSA   71 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---~Is~D------------~i~~~~~~~~---~~~~--------~~~   71 (611)
                      .++.+|+|+|+|||||||+++.|++.++..+.   .+...            .+..+.....   ..++        ..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEI   87 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999987653221   11110            1111111111   0111        235


Q ss_pred             HHHHHCCCcEEEecCCCCH----HHH----HHHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244           72 SSALKKGKSVFLDRCNLER----EQR----TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~----~~R----~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi  141 (611)
                      ...+..|..||+|.+....    ..+    ..|+. + ......-.+|+|++|.+++.+|+..|..+   .  + .++..
T Consensus        88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r---~--~-~~~~~  161 (212)
T 2wwf_A           88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI---Y--E-KVETQ  161 (212)
T ss_dssp             HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSST---T--C-SHHHH
T ss_pred             HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCccc---c--c-HHHHH
Confidence            5667788999999865321    111    12332 2 22122335899999999999998765321   1  1 24556


Q ss_pred             HHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244          142 NRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       142 ~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~  174 (611)
                      .++...++.+..  ....+++.. ...++++..
T Consensus       162 ~~~~~~~~~~~~--~~~~~~Id~-~~~~~~~~~  191 (212)
T 2wwf_A          162 KKIYETYKHFAH--EDYWINIDA-TRKIEDIHN  191 (212)
T ss_dssp             HHHHHHGGGGTT--CTTEEEEEC-SSCHHHHHH
T ss_pred             HHHHHHHHHHhc--cCCEEEEEC-CCCHHHHHH
Confidence            666555544432  233344433 244444443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.79  E-value=3.2e-08  Score=98.01  Aligned_cols=144  Identities=15%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC-Ce-EEee--cchhc----c------------------CCCCcHHH-----
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PW-ARIC--QDTIN----K------------------GKSGTKVQ-----   66 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~-~~Is--~D~i~----~------------------~~~~~~~~-----   66 (611)
                      ++..+++|+||+||||||+.+.|...... .+ ..++  ....+    +                  +.+.++..     
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~   93 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY   93 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence            45679999999999999999999887642 11 1111  10000    0                  00000000     


Q ss_pred             ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                         -...+.+.|..|+.+|+|   +....+..+.++ .   ....+|+...+.+++.+|+..|+.       +.++++..
T Consensus        94 yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG~-------~~~e~i~~  160 (219)
T 1s96_A           94 YGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAK  160 (219)
T ss_dssp             EEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHH
Confidence               014577889999999999   677777777777 5   234566667788999999988874       56788888


Q ss_pred             HHHhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244          143 RMLQKKELPKLSEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       143 rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      |+.+...+......|+++++++   +++.+...+.
T Consensus       161 rl~~a~~e~~~~~~~d~~i~Nd---~l~~a~~~l~  192 (219)
T 1s96_A          161 RMAQAVAEMSHYAEYDYLIVND---DFDTALTDLK  192 (219)
T ss_dssp             HHHHHHHHHTTGGGSSEEEECS---SHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCEEEECc---CHHHHHHHHH
Confidence            8877644334456799987774   4555555544

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.79  E-value=2.4e-08  Score=95.81  Aligned_cols=107  Identities=18%  Similarity=0.086  Sum_probs=65.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEee---cchh----ccC----CCCcHH-HHH----------HHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC---QDTI----NKG----KSGTKV-QCL----------TSASSAL   75 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~--~~~Is---~D~i----~~~----~~~~~~-~~~----------~~~~~~L   75 (611)
                      +.+|+|.|+|||||||+++.|++.++..  +....   .+.+    ..+    ....+. ..+          ..+...+
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l   83 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML   83 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999988743  32221   1111    111    122111 111          1234566


Q ss_pred             HCCCcEEEecCCCCHHHH--------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH-hcc
Q 007244           76 KKGKSVFLDRCNLEREQR--------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV-KRI  126 (611)
Q Consensus        76 ~~Gk~VIID~tnl~~~~R--------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~-~R~  126 (611)
                      ..|..||+|+.++.....        ..+..+ ......-.+|+|++|.+++.+|+. .|.
T Consensus        84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            788999999865432111        112223 222223358999999999999998 786

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.79  E-value=2.5e-08  Score=96.17  Aligned_cols=108  Identities=14%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeec--------chh----ccC-CCCcHH-H-H--------HHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQ--------DTI----NKG-KSGTKV-Q-C--------LTSA   71 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~--------D~i----~~~-~~~~~~-~-~--------~~~~   71 (611)
                      .++.+|+|+|+|||||||+++.|++.++..   ...+..        +.+    ..+ .+..+. . +        ...+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   86 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   86 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            346799999999999999999999876522   211211        001    111 111111 0 0        0235


Q ss_pred             HHHHHCCCcEEEecCCCCHH---------HHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~~---------~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      ...+..|..||+|...+...         .+..+..+ ......-.+|+|++|.+++.+|+..|
T Consensus        87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~  150 (215)
T 1nn5_A           87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG  150 (215)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred             HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence            56678899999995321110         12222223 22222335899999999999999644

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.79  E-value=3.2e-09  Score=100.40  Aligned_cols=97  Identities=15%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------CCC----CcHHHHHHHHHHHHHCCCcEEEec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKS----GTKVQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------~~~----~~~~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ++.+|+|+|+|||||||+++.|++.++  +.+++.|.+..         ...    .....+...+...+..|. +|+|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~vv~~   86 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGG-VIVDY   86 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCC-EEEEC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCC-EEEEe
Confidence            456789999999999999999999988  45577666521         111    112335566666777764 45565


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+..     .   +.. ...-.+|||++|.+++.+|+.+|..
T Consensus        87 ~~~~-----~---~~~-~~~~~vi~L~~~~e~l~~R~~~r~~  119 (180)
T 3iij_A           87 HGCD-----F---FPE-RWFHIVFVLRTDTNVLYERLETRGY  119 (180)
T ss_dssp             SCCT-----T---SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             chhh-----h---cch-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence            3311     0   011 0122588999999999999999964

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.78  E-value=5.1e-08  Score=92.04  Aligned_cols=108  Identities=19%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC---CC-c---HHHHHHHH---HHHH-HCCCcEEE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---SG-T---KVQCLTSA---SSAL-KKGKSVFL   83 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~---~~-~---~~~~~~~~---~~~L-~~Gk~VII   83 (611)
                      .++.+|+|+|++||||||+++.|+..+   +.+++.++.|.++...   .. .   ....+..+   ...+ ..|..++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT   82 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            356789999999999999999999876   6667667777775421   11 1   11122211   1223 45544444


Q ss_pred             ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      +..+.....+..+..+ +..+....+|+|++|.+++.+|+.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            4443333445555555 44556667899999999999998655

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.78  E-value=2.6e-08  Score=109.09  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccC---C---------CCc-----HHH----HHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---K---------SGT-----KVQ----CLTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~---~---------~~~-----~~~----~~~~~   71 (611)
                      ...++.+|+|+|+|||||||++++|++.++   .....++.|.++..   .         .+.     +..    ++..+
T Consensus        35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999998754   23445554444311   0         011     111    11223


Q ss_pred             HHHH--HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        72 ~~~L--~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      ...+  ..|..+|+|.+|.....|..|++. +..+..+.++.+.++ .+++.+|...|...........+++++..+
T Consensus       115 ~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~  191 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF  191 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHH
Confidence            4555  457789999999999999999888 666665554444445 566666665444321112223355554444

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.78  E-value=1.1e-08  Score=95.10  Aligned_cols=98  Identities=18%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-----------Cc--HHHHHHHHHHHHHCCCcEEEe-c--
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-----------GT--KVQCLTSASSALKKGKSVFLD-R--   85 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-----------~~--~~~~~~~~~~~L~~Gk~VIID-~--   85 (611)
                      .|+|+|+|||||||+++.|++.++.  .+++.|.+.....           +.  .......+...|.....+||+ +  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~--~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~   79 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNI--PFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG   79 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTC--CEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC--CEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence            5899999999999999999999884  4577777632111           10  001223344455545566665 2  


Q ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        86 tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ..+....+..+   +..+   .+|+|++|.+++.+|+.+|..
T Consensus        80 ~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~r~~  115 (168)
T 2pt5_A           80 LGANEEALNFM---KSRG---TTVFIDIPFEVFLERCKDSKE  115 (168)
T ss_dssp             HHTCHHHHHHH---HTTS---EEEEEECCHHHHHHHCBCTTC
T ss_pred             EeCCHHHHHHH---HcCC---EEEEEECCHHHHHHHHhCCCC
Confidence            23444444433   2223   488999999999999988753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.75  E-value=9.1e-09  Score=96.15  Aligned_cols=121  Identities=16%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-cHHHH------------HHHHHHHHHCCCcEEEec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TKVQC------------LTSASSALKKGKSVFLDR   85 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-~~~~~------------~~~~~~~L~~Gk~VIID~   85 (611)
                      ++.+|+|+|+|||||||+++.|+..++  +.+++.|.+.....+ ....+            ...+...+....++|+..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~--~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~   80 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLAT   80 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEEC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence            456899999999999999999999888  456787765321111 00000            012233444556777752


Q ss_pred             ---CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCH-HHHHHHHHhhc
Q 007244           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA-AAVVNRMLQKK  148 (611)
Q Consensus        86 ---tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vp-eevi~rm~~~~  148 (611)
                         ..+....+..+   +..+.   ++++++|.+++.+|+.+|..++.. ....+ .+.+..++...
T Consensus        81 ~~~~~~~~~~~~~l---~~~~~---~i~l~~~~~~l~~R~~~r~~r~~~-~~~~~~~~~~~~~~~~r  140 (173)
T 1kag_A           81 GGGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPLL-HVETPPREVLEALANER  140 (173)
T ss_dssp             CTTGGGSHHHHHHH---HHHSE---EEECCCCHHHHHSCC------CCS-SSSCCCHHHHHHHHHHH
T ss_pred             CCeEEecHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHHHHH
Confidence               22333333322   22232   789999999999999988654432 11222 45556555543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.72  E-value=2e-08  Score=93.65  Aligned_cols=96  Identities=22%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-cH--------H----HHHHHHHHHHHCCCcEEEecC-
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK--------V----QCLTSASSALKKGKSVFLDRC-   86 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-~~--------~----~~~~~~~~~L~~Gk~VIID~t-   86 (611)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+ ..        .    .....+...|. +..+||+.. 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~   79 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG   79 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--CcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence            4799999999999999999999988  556888776421111 00        0    11122333454 556777642 


Q ss_pred             --CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH--hc
Q 007244           87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV--KR  125 (611)
Q Consensus        87 --nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~--~R  125 (611)
                        .+....+..+   +..+   .+|+|++|.+++.+|+.  .|
T Consensus        80 ~~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           80 GMVLLEQNRQFM---RAHG---TVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             TGGGSHHHHHHH---HHHS---EEEEEECCHHHHHHHHHHHHC
T ss_pred             cEEeCHHHHHHH---HcCC---eEEEEECCHHHHHHHHhhccC
Confidence              2344444433   1112   48899999999999998  77

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.72  E-value=5.5e-08  Score=99.58  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=70.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----cC-------------------CCCcHHH------
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KG-------------------KSGTKVQ------   66 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----~~-------------------~~~~~~~------   66 (611)
                      ++.+.+|+|+|+|||||||+|+.|+ .++  +.+|+.|.+.     .+                   ....+..      
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf  148 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVF  148 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHh
Confidence            4567899999999999999999998 567  5668877661     00                   0000000      


Q ss_pred             ----------------H----HHHHHHHHHCC-CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           67 ----------------C----LTSASSALKKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        67 ----------------~----~~~~~~~L~~G-k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                                      +    ...+......+ ..||+|+..+...   .|..  ..+   .+||+++|.+++.+|+.+|
T Consensus       149 ~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~--~~d---~vI~l~a~~ev~~~Rl~~R  220 (281)
T 2f6r_A          149 GNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQS--MVH---EVWTVVIPETEAVRRIVER  220 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGG--GCS---EEEEEECCHHHHHHHHHHH
T ss_pred             CCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHH--hCC---EEEEEcCCHHHHHHHHHHc
Confidence                            0    01112222333 5799999654322   1211  122   4889999999999999998


Q ss_pred             ccccCCCCCCCHHHHHHHHHhh
Q 007244          126 IEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus       126 ~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      ..       ...+++..++..+
T Consensus       221 ~g-------~s~e~~~~ri~~q  235 (281)
T 2f6r_A          221 DG-------LSEAAAQSRLQSQ  235 (281)
T ss_dssp             HC-------CCHHHHHHHHHTS
T ss_pred             CC-------CCHHHHHHHHHHc
Confidence            53       2456666666665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.70  E-value=8.7e-08  Score=91.78  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eeecchhcc-------C--CC-CcHH---H-----------------
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTINK-------G--KS-GTKV---Q-----------------   66 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is~D~i~~-------~--~~-~~~~---~-----------------   66 (611)
                      .++.+|+|+|+|||||||+++.|...+..... .+.. ..+.       +  .. ....   .                 
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISM-TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNY   82 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCE-ECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEeccc-ccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCee
Confidence            34679999999999999999999887621111 1110 0000       0  00 0000   0                 


Q ss_pred             ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                         ....+...+..|..||+|.......   .+...  .+..+.+++.+++.+++.+|+.+|..       ..++++..+
T Consensus        83 ~g~~~~~i~~~l~~g~~vv~d~~~~~~~---~~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~-------~~~~~~~~r  150 (207)
T 2j41_A           83 YGTPVQYVKDTMDEGHDVFLEIEVEGAK---QVRKK--FPDALFIFLAPPSLEHLRERLVGRGT-------ESDEKIQSR  150 (207)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCGGGHH---HHHHH--CTTSEEEEEECCC-----------------------------
T ss_pred             cCCCHHHHHHHHHcCCeEEEEECHHHHH---HHHHh--cCCeEEEEEECCCHHHHHHHHHhcCC-------CCHHHHHHH
Confidence               0145666788899999998543322   22222  22223444455778999999998864       223344444


Q ss_pred             HHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          144 MLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       144 m~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      +...+......+.++.++...   .++++...
T Consensus       151 l~~~~~~~~~~~~~d~vI~n~---~~e~~~~~  179 (207)
T 2j41_A          151 INEARKEVEMMNLYDYVVVND---EVELAKNR  179 (207)
T ss_dssp             -----CGGGGGGGCSEEEECS---SHHHHHHH
T ss_pred             HHHHHHHHhccccCCEEEECC---CHHHHHHH
Confidence            544432222334566665443   35544443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.70  E-value=9.2e-08  Score=91.17  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH-cCCCeEEeecchhccC-------------CCC---cHHHHHHHHHHHHHCCC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS-SARPWARICQDTINKG-------------KSG---TKVQCLTSASSALKKGK   79 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~-~~~~~~~Is~D~i~~~-------------~~~---~~~~~~~~~~~~L~~Gk   79 (611)
                      ..++.+|+|+|+|||||||+++.|++. ++  +.+++.|.+...             .+.   ........+...+..+.
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g   84 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRG   84 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccC
Confidence            345678999999999999999999998 67  667887765210             111   11223445555563455


Q ss_pred             cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+|+|..+..        .+.... .-.+|+|++|.+++.+|+.+|..
T Consensus        85 ~~vi~~~~~~--------~~~~~~-~~~vi~l~~~~e~~~~Rl~~R~~  123 (184)
T 1y63_A           85 NHVVDYHSSE--------LFPERW-FHMVVVLHTSTEVLFERLTKRQY  123 (184)
T ss_dssp             EEEEECSCCT--------TSCGGG-CSEEEEEECCHHHHHHHHHHTTC
T ss_pred             CEEEeCchHh--------hhhhcc-CCEEEEEECCHHHHHHHHHhCCC
Confidence            6788874321        012111 12489999999999999999953

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=98.70  E-value=2.6e-09  Score=100.88  Aligned_cols=101  Identities=14%  Similarity=0.046  Sum_probs=75.3

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      .....+++.+.+..++.+. ..+  |++     .  .|.+.++.+.++-|.+.|.|..  .. .+.+...-.+|+..+.+
T Consensus        36 aI~~~~G~~l~~~c~~~g~-~~~--G~a-----~--it~~~~L~~~~Vih~vgp~~~~--~~-~~~L~~~~~~~L~~a~~  102 (159)
T 2dx6_A           36 AILRKGGPSIQEECDRIGK-IRV--GEA-----A--VTGAGNLPVRYVIHAAVLGDEP--AS-LETVRKATKSALEKAVE  102 (159)
T ss_dssp             HHHHHHCTHHHHHHHHHCC-CCT--TCE-----E--EEECTTSSSSEEEEEEEESSSC--CC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhcCC-CCC--CcE-----E--EecCCCCCCCEEEEEeCCCCCC--ch-HHHHHHHHHHHHHHHHH
Confidence            3445556677777776532 111  222     1  3556778899999999998862  21 23334455678899999


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHH
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF  307 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f  307 (611)
                      ++++|||||+||||+||||.++|++++++++.+|
T Consensus       103 ~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~  136 (159)
T 2dx6_A          103 LGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA  136 (159)
T ss_dssp             TTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS
T ss_pred             cCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=98.69  E-value=6.4e-09  Score=99.86  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=71.7

Q ss_pred             CCchhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      ......++.|++..+++-...    +...     -..|.+++..+..+-|.+-|.|..  ......    -.+|+..+-.
T Consensus        56 AI~~aaG~~l~~ec~~~~~~~----g~~~-----a~iT~G~~l~t~~VIHtVGP~~~~--~~~~~~----L~~~y~~~L~  120 (176)
T 3ejf_A           56 AIADFCGLDFVEYCEDYVKKH----GPQQ-----RLVTPSFVKGIQCVNNVVGPRHGD--NNLHEK----LVAAYKNVLV  120 (176)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH----CCCS-----EEEECCCSTTEEEEEEECCCCTTC--SCHHHH----HHHHHHTTCC
T ss_pred             HHHHHhhHHHHHHHHHHHHhc----CCCC-----eeecccccccCCEEEEeCCCCCCC--ccHHHH----HHHHHHHHHH
Confidence            455566788888877752210    0000     012445566666799999888854  222222    2333333333


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecC
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT  322 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s  322 (611)
                      ++++|||||+||||+||||.++||+++++++++     ..+++++++.+
T Consensus       121 ~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D  164 (176)
T 3ejf_A          121 DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLS  164 (176)
T ss_dssp             TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESC
T ss_pred             cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCC
Confidence            899999999999999999999999999999973     34777776544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.68  E-value=7.1e-09  Score=102.26  Aligned_cols=135  Identities=13%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHH-HHcCC--------------------CeEEeecchhc----cCCCCcH----H---
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVM-RSSAR--------------------PWARICQDTIN----KGKSGTK----V---   65 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~-~~~~~--------------------~~~~Is~D~i~----~~~~~~~----~---   65 (611)
                      .++.+|.|+||+||||||+++.|. ..++.                    .+..++.+.+.    .+.+..+    .   
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY  104 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence            345789999999999999999998 65421                    11111111110    0000000    0   


Q ss_pred             -HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCC-CCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           66 -QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGP-EVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        66 -~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~-~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                       .....+.+.+..|+.+|+|..      ......+ ... .....+++.+++.+++.+|+.+|..       ...+++..
T Consensus       105 ~~~~~~i~~~~~~~~~vild~~------~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~-------~~~~~i~~  171 (231)
T 3lnc_A          105 GVPRKNLEDNVDKGVSTLLVID------WQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA-------DDSEVVEA  171 (231)
T ss_dssp             EEECTTHHHHHHHTCEEEEECC------HHHHHHHHHHSGGGEEEEEEECSCHHHHHHC---------------------
T ss_pred             CCCHHHHHHHHHcCCeEEEEcC------HHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC-------CCHHHHHH
Confidence             001235667788999999862      2222223 223 2223344557789999999998854       23444555


Q ss_pred             HHHhhccCCCccCCccEEEEcCC
Q 007244          143 RMLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus       143 rm~~~~e~P~~~EgFd~V~vv~~  165 (611)
                      ++..+.........||.|+++++
T Consensus       172 rl~~~~~~~~~~~~~d~vI~n~~  194 (231)
T 3lnc_A          172 RLKGAAFEISHCEAYDYVIVNED  194 (231)
T ss_dssp             CHHHHHHHHTTGGGSSEEEECSS
T ss_pred             HHHHHHHHHhhhcCCeEEEECcC
Confidence            55544333333556788877754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.68  E-value=6.3e-08  Score=108.92  Aligned_cols=106  Identities=14%  Similarity=0.133  Sum_probs=79.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccCC-----CCcHHH------HHHHHHHHHHCCCc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGK-----SGTKVQ------CLTSASSALKKGKS   80 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~~-----~~~~~~------~~~~~~~~L~~Gk~   80 (611)
                      ..+++.+|+|+|+|||||||+|+.|.+.++    ..+..++.|.++.+.     +...+.      +...+...+..|..
T Consensus       392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~  471 (573)
T 1m8p_A          392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAA  471 (573)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCE
Confidence            345678999999999999999999998876    557788888876321     111111      11345566678989


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHH
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                      ||+|..+..+..|..+..+ +..+ ...+|||++|.++|.+|.
T Consensus       472 VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          472 VIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred             EEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence            9999888778888888777 5544 467899999999999995

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=98.67  E-value=1.1e-09  Score=104.48  Aligned_cols=81  Identities=10%  Similarity=0.040  Sum_probs=62.5

Q ss_pred             cccccceeeccccccccc-ccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC-CeE
Q 007244          238 CLEGQEITSLLSDAAGEE-VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NAR  315 (611)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~-~i~  315 (611)
                      |.++-|.+-|.|..+... ..+.+...-.+|+.++.+++++|||||+||||+||||.++||+ +++++.+|++... .+.
T Consensus        70 ~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~  148 (168)
T 3gpg_A           70 TYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVV  148 (168)
T ss_dssp             TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEE
T ss_pred             CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEE
Confidence            889999999999763322 1234444556788999999999999999999999999999999 8899999987652 244


Q ss_pred             EEEe
Q 007244          316 LVLV  319 (611)
Q Consensus       316 iV~v  319 (611)
                      ||++
T Consensus       149 fv~f  152 (168)
T 3gpg_A          149 IYCR  152 (168)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            4444

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.66  E-value=4.4e-08  Score=109.61  Aligned_cols=104  Identities=21%  Similarity=0.225  Sum_probs=78.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-----CCcHH------HHHHHHHHHHHCCCcEEE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGTKV------QCLTSASSALKKGKSVFL   83 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-----~~~~~------~~~~~~~~~L~~Gk~VII   83 (611)
                      ..+.+|+|+|+|||||||+|+.|.+.++   ..+.+++.|.++...     +...+      .+...+...+..|..||+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~  449 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC  449 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4568999999999999999999988764   346778888875321     21111      122345567788999999


Q ss_pred             ecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        84 D~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      |.++..+..|..+..+ ...  .+.+|+|++|.++|.+|+.
T Consensus       450 d~~~~~~~~r~~~~~~l~~~--d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          450 ALVSPYRSARNQVRNMMEEG--KFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             ECCCCCHHHHHHHHTTSCTT--CEEEEEEECCGGGHHHHCC
T ss_pred             EcCCCCHHHHHHHHHHhhcC--CEEEEEEeCCHHHHHHHhh
Confidence            9988888888888777 542  3578999999999999985

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.66  E-value=3.4e-08  Score=94.97  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +|.|+|++||||||+++.|++ ++  +.+++.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d~~   34 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVLDADKL   34 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC--CEEEEccHH
Confidence            689999999999999999998 77  556776655

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.64  E-value=1.1e-07  Score=89.66  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchh------ccCCCC---------cH--HHHH----HHHHHHH-
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI------NKGKSG---------TK--VQCL----TSASSAL-   75 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i------~~~~~~---------~~--~~~~----~~~~~~L-   75 (611)
                      .+|+|+|+|||||||+++.|++.++.   .+.+++.|.+      ++....         ..  ..+.    ..+...+ 
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   81 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence            47999999999999999999998762   2566764433      122111         11  1121    2234555 


Q ss_pred             -HCCCcEEEecCCCCHHH--------HHHHHHhCCCCCeEEEEEEeCCHHHHHHH-HHh--ccc
Q 007244           76 -KKGKSVFLDRCNLEREQ--------RTDFVKLGGPEVDVHAVVLDLPAKLCISR-SVK--RIE  127 (611)
Q Consensus        76 -~~Gk~VIID~tnl~~~~--------R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R-l~~--R~~  127 (611)
                       ..|..||+|+......+        +..+..+.    .-.+|+|++|.+++++| +..  |.+
T Consensus        82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~vi~l~~~~~~~~~rr~~~~~R~~  141 (194)
T 1nks_A           82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN----PSVIFLLEADPKIILSRQKRDTTRNR  141 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC----CSEEEEEECCHHHHHHHHHHCTTTCC
T ss_pred             ccCCCEEEECCchhhccccccccCCCHHHHHhcC----CCEEEEEeCCHHHHHHHHHhhcccCC
Confidence             67889999984211000        11111121    12488999999998866 766  643

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=98.63  E-value=5.1e-09  Score=103.46  Aligned_cols=88  Identities=16%  Similarity=0.131  Sum_probs=68.1

Q ss_pred             ccccccccc---ccccceeec----ccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHH
Q 007244          230 QITEEKNSC---LEGQEITSL----LSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIE  302 (611)
Q Consensus       230 ~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~  302 (611)
                      .|.+.++.+   .++-|.+.|    .|+.   ...+.+...-.+|+..|.+++++|||||+||||+||||.++||+++++
T Consensus        91 iT~~~~L~~~g~k~VIH~vgP~~~~~~~~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~  167 (211)
T 1vhu_A           91 VTPAMNLEERGIKYVFHTVGPICSGMWSE---ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLE  167 (211)
T ss_dssp             EEECGGGGGGTCCEEEEEECCCCTTCCCH---HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred             EEECCCCCccCcCEEEEecCCccccccCc---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHH
Confidence            366778888   899999999    7742   222334445667889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEeec
Q 007244          303 KVEEFVNKLGNARLVLVDL  321 (611)
Q Consensus       303 tv~~f~~~~~~i~iV~vd~  321 (611)
                      ++++|+ +++...++++.+
T Consensus       168 ~v~~~l-~~~l~~V~~v~~  185 (211)
T 1vhu_A          168 AVKNFK-GSAVKEVALVIY  185 (211)
T ss_dssp             HHHHCC-CSSCCEEEEEES
T ss_pred             HHHHHH-hCCCCEEEEEEC
Confidence            999999 443224444433

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.62  E-value=1.8e-08  Score=95.84  Aligned_cols=132  Identities=11%  Similarity=0.209  Sum_probs=73.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCC---------------------eEEeecchhc----cCCCCcHHH-------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP---------------------WARICQDTIN----KGKSGTKVQ-------   66 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~---------------------~~~Is~D~i~----~~~~~~~~~-------   66 (611)
                      +..+++|+||+||||||+++.|...+...                     +..++.+.+.    .+.+..+..       
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg   83 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   83 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence            45699999999999999999999875421                     1112211111    111111000       


Q ss_pred             -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCC-HHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                       -...+.+.+..|+.+|+|.      +++.+..++.......+||+.+| .+++.+|                ++.++|+
T Consensus        84 ~~~~~i~~~l~~g~~vil~i------d~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R----------------~~~i~r~  141 (180)
T 1kgd_A           84 TKLETIRKIHEQGLIAILDV------EPQALKVLRTAEFAPFVVFIAAPTITPGLNE----------------DESLQRL  141 (180)
T ss_dssp             EEHHHHHHHHHTTCEEEEEC------CGGGHHHHSSTTTCEEEEEEECCSCCTTSCC----------------SHHHHHH
T ss_pred             ccHHHHHHHHHCCCeEEEEE------CHHHHHHHHHhCCCcEEEEEECCCHHHHHhh----------------HHHHHHH
Confidence             0145678889999999996      33444445222234567777766 4544433                1233566


Q ss_pred             HhhccCC--CccCCccEEEEcCChhhHHHHHHH
Q 007244          145 LQKKELP--KLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       145 ~~~~e~P--~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      .+...+.  .....||.+++++   +++.+...
T Consensus       142 ~~~~~~~~~~~~~~~d~~i~n~---~~~~~~~~  171 (180)
T 1kgd_A          142 QKESDILQRTYAHYFDLTIINN---EIDETIRH  171 (180)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECS---SHHHHHHH
T ss_pred             HHHHHHHHHhhhCCCcEEEECc---CHHHHHHH
Confidence            5543222  2345688887664   35554443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.61  E-value=1.7e-07  Score=88.80  Aligned_cols=125  Identities=22%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc--------CCCCc----HHHHH----HHHHHHHHCCCc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------GKSGT----KVQCL----TSASSALKKGKS   80 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~--------~~~~~----~~~~~----~~~~~~L~~Gk~   80 (611)
                      -.++.+|+|+|+|||||||+++.|+...+...+.++.|.+..        +....    ...+.    ..+......|..
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~   85 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYF   85 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCe
Confidence            456789999999999999999999887655566788776631        11111    11111    122233456677


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC
Q 007244           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~  150 (611)
                      +++|.. +....+..+..+   +..+..+++.++.+++++|+..|..+-     ....+.+..+.+.+..
T Consensus        86 ~~~~~~-~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~-----lld~~~~~~~~~~~~~  146 (191)
T 1zp6_A           86 VILDGV-VRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFAD  146 (191)
T ss_dssp             EEECSC-CCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTC
T ss_pred             EEEecc-CcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCc-----cCCHHHHHHHHHHHhc
Confidence            888884 332233333221   334567899999999999999985421     1223455556655543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.61  E-value=3.5e-08  Score=95.23  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC-------------------CC-----CcHHH---------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------------------KS-----GTKVQ---------   66 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~-------------------~~-----~~~~~---------   66 (611)
                      +.+|.|+|+|||||||+++.|++ ++  +.+++.|.+...                   .+     ..+..         
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg--~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~   78 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LG--VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHD   78 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TT--CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CC--CcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCH
Confidence            46899999999999999999977 77  445777765210                   00     00000         


Q ss_pred             -------------HHHHHHHHHH--CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 007244           67 -------------CLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (611)
Q Consensus        67 -------------~~~~~~~~L~--~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~  131 (611)
                                   ....+.+.+.  .+..+|+|+..+... .  +..  ..+   .+|++++|.+++.+|+.+|..    
T Consensus        79 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~-~--~~~--~~d---~vi~l~~~~e~~~~Rl~~R~~----  146 (206)
T 1jjv_A           79 EDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIEN-K--LTA--LCD---RILVVDVSPQTQLARSAQRDN----  146 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTT-T--CGG--GCS---EEEEEECCHHHHHHHHC--------
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhc-C--cHh--hCC---EEEEEECCHHHHHHHHHHcCC----
Confidence                         0011112232  355788887322221 1  211  122   388999999999999998853    


Q ss_pred             CCCCCHHHHHHHHHhh
Q 007244          132 LQGGKAAAVVNRMLQK  147 (611)
Q Consensus       132 ~~~~vpeevi~rm~~~  147 (611)
                         ...+++..++..+
T Consensus       147 ---~~~e~~~~r~~~q  159 (206)
T 1jjv_A          147 ---NNFEQIQRIMNSQ  159 (206)
T ss_dssp             ----CHHHHHHHHHHS
T ss_pred             ---CCHHHHHHHHHhc
Confidence               2345566666654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.60  E-value=2.3e-07  Score=89.86  Aligned_cols=134  Identities=12%  Similarity=0.141  Sum_probs=76.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEeecchhcc----CCCCcH----HH---
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTINK----GKSGTK----VQ---   66 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~---------------------~~~~Is~D~i~~----~~~~~~----~~---   66 (611)
                      ++.+++|+||+||||||+++.|...+..                     .+..++.+.++.    +.+..+    ..   
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence            3467999999999999999999875431                     122222221110    000000    00   


Q ss_pred             -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                       -...+.++++.+..+++|.      ....+..+ ........+++.+++..++.+|+..|..       +..+.+..++
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~-------~~e~~i~~~l  149 (198)
T 1lvg_A           83 TSKEAVRAVQAMNRICVLDV------DLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAKRL  149 (198)
T ss_dssp             EEHHHHHHHHHTTCEEEEEC------CHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCcEEEEC------CHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence             0145667778888888775      23344444 2222222344445668999999998876       4566666666


Q ss_pred             HhhccCCCcc---CCccEEEEcCC
Q 007244          145 LQKKELPKLS---EGFSRITLCQN  165 (611)
Q Consensus       145 ~~~~e~P~~~---EgFd~V~vv~~  165 (611)
                      ..........   ..||+|+++++
T Consensus       150 ~~~~~~~~~a~~~~~~D~iivnd~  173 (198)
T 1lvg_A          150 AAARTDMESSKEPGLFDLVIINDD  173 (198)
T ss_dssp             HHHHHHTTGGGSTTTCSEEEECSS
T ss_pred             HHHHHHHHHhhccCCceEEEECCC
Confidence            5543222222   67899988864

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=98.60  E-value=1.6e-08  Score=97.76  Aligned_cols=85  Identities=13%  Similarity=0.086  Sum_probs=61.1

Q ss_pred             ccccccccccccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHh
Q 007244          231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK  310 (611)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~  310 (611)
                      |.+.++ +.++-|.+.|.|..  ..    ....-.+|+..+  ++++|||||+||||+||||.++||+++++++.+    
T Consensus        89 T~~~~L-~~~VIH~vgP~~~~--~~----~~~~L~~~y~~~--~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~----  155 (182)
T 2acf_A           89 LSGHNL-AKKCLHVVGPNLNA--GE----DIQLLKAAYENF--NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT----  155 (182)
T ss_dssp             EECTTT-CSEEEEECCCCGGG--TC----CTTHHHHHHHGG--GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS----
T ss_pred             eeCCCC-CceEEEECCCCCCC--Cc----hHHHHHHHHHHh--cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC----
Confidence            445555 45788988888864  21    222334455543  799999999999999999999999999999975    


Q ss_pred             cCCeEEEEeecCcchhhhhh
Q 007244          311 LGNARLVLVDLTQGSKILSL  330 (611)
Q Consensus       311 ~~~i~iV~vd~s~~s~~Ls~  330 (611)
                        .+.+|..|...|...|..
T Consensus       156 --~V~~v~~d~~~y~~~l~~  173 (182)
T 2acf_A          156 --QVYIAVNDKALYEQVVMD  173 (182)
T ss_dssp             --EEEEEESCHHHHHHHHHH
T ss_pred             --cEEEEECCHHHHHHHHHH
Confidence              466666665556665543

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=98.58  E-value=5.3e-09  Score=99.81  Aligned_cols=86  Identities=12%  Similarity=0.036  Sum_probs=59.6

Q ss_pred             cccccceeeccccccccc-ccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEE
Q 007244          238 CLEGQEITSLLSDAAGEE-VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARL  316 (611)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~i  316 (611)
                      +.++-|.+-|.|..+... ..+.+...-.+|+.++.+++++|||||+||||+||||.++|++++.+..+.+-.....+.|
T Consensus        64 ~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~i  143 (168)
T 3gqe_A           64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAI  143 (168)
T ss_dssp             TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEE
Confidence            889999999998763321 1234444566788999999999999999999999999999999654333222111112555


Q ss_pred             EEeecCc
Q 007244          317 VLVDLTQ  323 (611)
Q Consensus       317 V~vd~s~  323 (611)
                      |++|...
T Consensus       144 v~fd~~~  150 (168)
T 3gqe_A          144 YCRDKKW  150 (168)
T ss_dssp             EESCHHH
T ss_pred             EEcCHHH
Confidence            5554443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.58  E-value=3.2e-08  Score=94.55  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..++.+|.|+|++||||||+++.|++. +  +.+++.|.+
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d~~   41 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-G--YPVLDLDAL   41 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-C--CEEEcccHH
Confidence            456789999999999999999999987 6  445777765

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=98.58  E-value=1.3e-08  Score=97.14  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=73.4

Q ss_pred             CCchhhhhhHHHHHHhhcCCC-CCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCC
Q 007244          194 NPDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  272 (611)
                      ......++.|++..+++-... ....++.     .  .|.++ +.+.++-|.+-|.|..  ....+.+...-.+|+..  
T Consensus        48 AI~~aaG~~l~~ec~~~~~~~g~~~~G~a-----~--iT~g~-l~~~~VIHtVgP~~~~--~~~~~~L~~~y~~~L~~--  115 (168)
T 3eti_A           48 AIDVFTGGKLTKRSKEYLKSSKAIAPGNA-----V--LFENV-LEHLSVMNAVGPRNGD--SRVEGKLCNVYKAIAKC--  115 (168)
T ss_dssp             HHHHHTTTHHHHHHHHHHTTSCCCCTTEE-----E--EEEEE-ETTEEEEEEECCCTTS--TTHHHHHHHHHHHHHTS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCE-----E--EecCC-CCccEEEEecCCCCCc--chHHHHHHHHHHHHHHh--
Confidence            455666888888887763311 1111221     1  35666 8889999999999864  32222333333344443  


Q ss_pred             CCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecC
Q 007244          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT  322 (611)
Q Consensus       273 ~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s  322 (611)
                         .+|||||+||||+||||.++||+++++++++     ..+.+++++..
T Consensus       116 ---~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~  157 (168)
T 3eti_A          116 ---DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQ  157 (168)
T ss_dssp             ---CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHH
T ss_pred             ---cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHH
Confidence               3799999999999999999999999999976     45666665433

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.57  E-value=2.4e-07  Score=87.29  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchh-c-----cCCC------C--cH--HH-HHHHH---HHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTI-N-----KGKS------G--TK--VQ-CLTSA---SSALK   76 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~---~~~Is~D~i-~-----~~~~------~--~~--~~-~~~~~---~~~L~   76 (611)
                      +.+|+|+|+|||||||+++.|++.++..   +.+++.|.+ +     .+..      .  ..  .. +...+   ...+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   82 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA   82 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence            4689999999999999999999987621   445665432 1     1110      0  01  11 11112   12234


Q ss_pred             CCCcEEEecCCCCHHHHH-------HHHHhCCCCCeEEEEEEeCCHHHHHH-HHHh--ccc
Q 007244           77 KGKSVFLDRCNLEREQRT-------DFVKLGGPEVDVHAVVLDLPAKLCIS-RSVK--RIE  127 (611)
Q Consensus        77 ~Gk~VIID~tnl~~~~R~-------~~~~l~~~~~~v~vV~Ld~p~e~~~~-Rl~~--R~~  127 (611)
                      .+..||+|+.........       .++.-...  . .+|||++|.+++.+ |+..  |.+
T Consensus        83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~l~~~~~~~~~rRl~~~~R~r  140 (192)
T 1kht_A           83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP--D-LIIVVETTGDEILMRRMSDETRVR  140 (192)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHHCC--S-EEEEEECCHHHHHHHHHTSSSCSS
T ss_pred             cCCeEEEccceeccccccccccCcHHHHhccCC--C-EEEEEeCCHHHHHHHHhhhcccCC
Confidence            567899998442110000       11111011  2 38999999999996 8977  643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.57  E-value=3.4e-08  Score=92.97  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-----------c--HHHHHHHHHHHHHCCCcEEEecCCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-----------T--KVQCLTSASSALKKGKSVFLDRCNL   88 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-----------~--~~~~~~~~~~~L~~Gk~VIID~tnl   88 (611)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+           .  .......+.+.+.....+||+....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~   83 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   83 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence            589999999999999999999998  556888876421111           0  0111123334455556677773211


Q ss_pred             CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      ....+.    ++..+   .+|||++|.+++.+|+.+|.
T Consensus        84 ~~~~~~----l~~~~---~~i~l~~~~e~~~~R~~~r~  114 (175)
T 1via_A           84 FVNVSN----LEKAG---FCIYLKADFEYLKKRLDKDE  114 (175)
T ss_dssp             GGGSTT----GGGGC---EEEEEECCHHHHTTCCCGGG
T ss_pred             EehhhH----HhcCC---EEEEEeCCHHHHHHHHhccc
Confidence            110111    32222   48899999999999998874

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=98.56  E-value=1.7e-08  Score=103.76  Aligned_cols=77  Identities=8%  Similarity=-0.019  Sum_probs=61.8

Q ss_pred             ccccccccceeecccccccc--------cccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 007244          235 KNSCLEGQEITSLLSDAAGE--------EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (611)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~  306 (611)
                      ++.|.++-|.+.|.|+....        ...+.....-.+|+..+ +++++|||||+||||+||||.++||+++++++++
T Consensus       137 ~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~  215 (284)
T 1njr_A          137 RDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRL  215 (284)
T ss_dssp             CTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHH
Confidence            88999999999998875210        01112222345778888 9999999999999999999999999999999999


Q ss_pred             HHHhcC
Q 007244          307 FVNKLG  312 (611)
Q Consensus       307 f~~~~~  312 (611)
                      |+.+++
T Consensus       216 f~~~~~  221 (284)
T 1njr_A          216 YMAGDH  221 (284)
T ss_dssp             HHTGGG
T ss_pred             HHHhCC
Confidence            998765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.56  E-value=9.8e-08  Score=93.31  Aligned_cols=93  Identities=11%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEeecchh----ccCCCCcHHH-----
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTI----NKGKSGTKVQ-----   66 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---------------------~~Is~D~i----~~~~~~~~~~-----   66 (611)
                      .-++.+|+|+||+||||||+++.|.+.++..+                     ..++.+.+    ..+.+..+..     
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~   95 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNM   95 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhcee
Confidence            34567999999999999999999998765211                     11221111    1111111110     


Q ss_pred             ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCH
Q 007244           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA  115 (611)
Q Consensus        67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~  115 (611)
                         -...+.+.+..|+.+|+|.      +++....+ +.....+.+++.+++.
T Consensus        96 YGt~~~~v~~~l~~G~~vildi------d~qg~~~~~~~~~~~~~Ifi~Pps~  142 (197)
T 3ney_A           96 FGTKFETVHQIHKQNKIAILDI------EPQTLKIVRTAELSPFIVFIAPTDQ  142 (197)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEEC------CGGGHHHHCSTTTCEEEEEEEECCB
T ss_pred             cccchhhHHHHHhcCCeEEEEE------CHHHHHHHHhcCCCceEEEEeCCCc
Confidence               0145788999999999999      67777666 4444444444445544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.55  E-value=2.3e-07  Score=89.61  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccC---------CCC--------cHHHHHHHHHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKG---------KSG--------TKVQCLTSASSALK   76 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~---------~~~--------~~~~~~~~~~~~L~   76 (611)
                      +..+++.+|.|+|+|||||||+++.|.+.+ +  +.++++|.+...         .+.        ....+...+...+.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~   93 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWME   93 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence            455667899999999999999999998876 4  667888776311         011        11223333444333


Q ss_pred             ---------------CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 ---------------KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 ---------------~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                                     ....+|+|+..... . ..+.  ...+   .++++++|.+++.+|+..|..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~-~~~~--~~~d---~~i~l~~~~~~~~~R~~~R~~  152 (207)
T 2qt1_A           94 SARHSVVSTDQESAEEIPILIIEGFLLFN-Y-KPLD--TIWN---RSYFLTIPYEECKRRRSTRVY  152 (207)
T ss_dssp             HHTTSSCCC-----CCCCEEEEECTTCTT-C-GGGT--TTCS---EEEEEECCHHHHHHHHHHSCC
T ss_pred             CCCCCCcCCCeeecCCCCEEEEeehHHcC-c-HHHH--HhcC---eeEEEECCHHHHHHHHHHcCC
Confidence                           24578999954331 1 1111  2222   488999999999999988853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.55  E-value=4.7e-07  Score=86.56  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecch------------hccC-CCCcH-HHH---------HHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDT------------INKG-KSGTK-VQC---------LTSASSA   74 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~------------i~~~-~~~~~-~~~---------~~~~~~~   74 (611)
                      ++.+|+|+|+|||||||+++.|++.+ +..+..+....            +..+ .+... ..+         ...+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~   82 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ   82 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999987 33343332111            1111 11111 111         1234556


Q ss_pred             HHCCCcEEEecCCCCHHH--------HHHHHHh-CCCCCeEEEEEEeCCHHHHHH
Q 007244           75 LKKGKSVFLDRCNLEREQ--------RTDFVKL-GGPEVDVHAVVLDLPAKLCIS  120 (611)
Q Consensus        75 L~~Gk~VIID~tnl~~~~--------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~  120 (611)
                      +..|..||+|........        +..+..+ ......-.+|+|++|.+++.+
T Consensus        83 l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~  137 (204)
T 2v54_A           83 LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR  137 (204)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred             HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence            778889999974432110        1112222 221122248899999999887

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.53  E-value=2.7e-07  Score=87.91  Aligned_cols=103  Identities=20%  Similarity=0.167  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc--------hhccCCC-CcH-HHH------HHHHHHHHHCCCcEEEec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD--------TINKGKS-GTK-VQC------LTSASSALKKGKSVFLDR   85 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D--------~i~~~~~-~~~-~~~------~~~~~~~L~~Gk~VIID~   85 (611)
                      +|+|.|+|||||||+++.|++.++..+  +...        .+..+.. ... .+.      ...+...+..|. +|+|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-vi~d~   78 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEI--FKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLEN-IIFDR   78 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEE--ECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------C-EEEES
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcE--EcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCC-EEEEe
Confidence            689999999999999999999988433  3211        1100000 000 000      122233445554 99999


Q ss_pred             CCCCHHH---------------HHH---HHH-h-CCC-------CCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           86 CNLEREQ---------------RTD---FVK-L-GGP-------EVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        86 tnl~~~~---------------R~~---~~~-l-~~~-------~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +......               +..   +.. . ...       ...-.+|+|++|.+++.+|+.+|++
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r  147 (205)
T 2jaq_A           79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR  147 (205)
T ss_dssp             CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC
T ss_pred             ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            7664211               111   111 1 111       2223689999999999999988853

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.53  E-value=4.9e-07  Score=89.12  Aligned_cols=153  Identities=14%  Similarity=0.136  Sum_probs=83.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeec-----------chhccCC---CCcHHH-----------HHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-----------DTINKGK---SGTKVQ-----------CLTS   70 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~-----------D~i~~~~---~~~~~~-----------~~~~   70 (611)
                      ++.+|+|.|++||||||+++.|.+.+..   .......           +.+.++.   ...+..           +...
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~   84 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGV   84 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3679999999999999999999887642   2222210           1112221   111111           1234


Q ss_pred             HHHHHHCCCcEEEecCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCH
Q 007244           71 ASSALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA  137 (611)
Q Consensus        71 ~~~~L~~Gk~VIID~tnl------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vp  137 (611)
                      +..+|..|..||.|....            .......+... .....+-.+|+|++|.+++.+|+.+|....  +.....
T Consensus        85 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~d--r~E~~~  162 (213)
T 4edh_A           85 IRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLD--RFEQED  162 (213)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCC--TTTTSC
T ss_pred             HHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcC--cccccH
Confidence            566888999999998321            12222222222 122234468999999999999999985311  111112


Q ss_pred             HHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244          138 AAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       138 eevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~  174 (611)
                      .+.+++....+......+. .++++++....++++..
T Consensus       163 ~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eeV~~  198 (213)
T 4edh_A          163 RRFFEAVRQTYLQRAAQAP-ERYQVLDAGLPLAEVQA  198 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-TTEEEEETTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHH
Confidence            4455555544432211111 13455554455555544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.48  E-value=8.1e-07  Score=88.36  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=66.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHH--C
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K   77 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~   77 (611)
                      +|.+|+|+|+|||||||+++.|++.++...  ++.+.+ .+                  +.......+.+.+...+.  .
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999988443  444332 11                  111122223334444444  4


Q ss_pred             CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        78 Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +..+|+|+......+...+..+...+   .+++|++|.+++.+|+..|..
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~l~r~~~r~~  150 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKICEVD---LVISLNIPFETLKDRLSRRWI  150 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCCCC---EEEEEECCHHHHHHHHHTEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCCC---EEEEEECCHHHHHHHHHcCCC
Confidence            56788998655543333332222222   478999999999999988753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.47  E-value=1.8e-07  Score=87.29  Aligned_cols=95  Identities=20%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---CCC--------CcH--HHHHHHHHHHHHCCCcE-EEecC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS--------GTK--VQCLTSASSALKKGKSV-FLDRC   86 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---~~~--------~~~--~~~~~~~~~~L~~Gk~V-IID~t   86 (611)
                      .+|+|+|+|||||||+++.|++.++.++  ++.|.+..   +..        +..  ......+...+.....+ |+...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~--id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g   85 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEV--LDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG   85 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCE--EEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCE--EEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence            4789999999999999999999999554  77776632   110        110  01112222223333344 55431


Q ss_pred             -CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        87 -nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                       .+... +.    ++..   -.+|+|++|.+++.+|+.+|
T Consensus        86 ~g~~~~-~~----l~~~---~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           86 GGIVMH-EN----LKGL---GTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             GGGGGC-GG----GTTS---EEEEEEECCHHHHHHHHCC-
T ss_pred             CCEech-hH----HhcC---CEEEEEECCHHHHHHHHhcc
Confidence             11100 11    3222   25889999999999999888

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.47  E-value=4e-07  Score=88.65  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=29.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ++.+|+|+|++||||||+++.|++ ++  +.+++.|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LG--INVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cC--CEEEEccHH
Confidence            467999999999999999999987 77  556777655

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.47  E-value=8.5e-07  Score=87.49  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=73.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-----C--------------C-----CCcHH-----------
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----G--------------K-----SGTKV-----------   65 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-----~--------------~-----~~~~~-----------   65 (611)
                      .-|.|+|.+||||||+++.+.+ +|  +.+|+.|.+..     +              .     ...+.           
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g--~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~   86 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RG--ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED   86 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC--CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence            3589999999999999998876 77  66688877521     0              0     00110           


Q ss_pred             -----------HHHHHHHHHHHC--CCcEEEecCCCCH-HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCC
Q 007244           66 -----------QCLTSASSALKK--GKSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (611)
Q Consensus        66 -----------~~~~~~~~~L~~--Gk~VIID~tnl~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~  131 (611)
                                 .+...+.+.+..  +..+|+|..-+.+ .....+.+.        +|++++|.++..+|+.+|..    
T Consensus        87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~--------vi~V~ap~e~r~~Rl~~Rdg----  154 (210)
T 4i1u_A           87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDR--------VLVVDCPVDTQIARVMQRNG----  154 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSE--------EEEEECCHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCe--------EEEEECCHHHHHHHHHhcCC----
Confidence                       011233333332  3458999966665 444444333        88999999999999999974    


Q ss_pred             CCCCCHHHHHHHHHhhc
Q 007244          132 LQGGKAAAVVNRMLQKK  148 (611)
Q Consensus       132 ~~~~vpeevi~rm~~~~  148 (611)
                         ...+++..++..+.
T Consensus       155 ---~s~eea~~ri~~Q~  168 (210)
T 4i1u_A          155 ---FTREQVEAIIARQA  168 (210)
T ss_dssp             ---CCHHHHHHHHHHSC
T ss_pred             ---CCHHHHHHHHHHcC
Confidence               45677777777764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.46  E-value=3e-07  Score=91.73  Aligned_cols=152  Identities=14%  Similarity=0.142  Sum_probs=80.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc-------CCCeEEeec-----------chhccCCCCcHHH-----------HHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQ-----------DTINKGKSGTKVQ-----------CLT   69 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~-------~~~~~~Is~-----------D~i~~~~~~~~~~-----------~~~   69 (611)
                      ++.+|+|.|++||||||+++.|.+.+       +..+.....           +.+.++.......           +..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~  103 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL  103 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999998876       322222210           1111222221111           113


Q ss_pred             HHHHHHHCCCcEEEecCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 007244           70 SASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK  136 (611)
Q Consensus        70 ~~~~~L~~Gk~VIID~tnl~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~v  136 (611)
                      .+..+|..|+.||.|.....            .+....+... .....+-.+|+|++|.+++.+|+.+|....  +. +.
T Consensus       104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~d--r~-E~  180 (227)
T 3v9p_A          104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPD--KF-ES  180 (227)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC------CC
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCcc--ch-hh
Confidence            46678899999999973222            2222222122 112233468899999999999999885311  11 22


Q ss_pred             -HHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244          137 -AAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       137 -peevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~  174 (611)
                       ..+.+++....++.....+. .++++++....++++..
T Consensus       181 ~~~ef~~rv~~~Y~~la~~~~-~~~~vIDa~~s~eeV~~  218 (227)
T 3v9p_A          181 ESDAFFARTRAEYLRRAQEAP-HRFVIVDSSEPIAQIRK  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT-TTEEEEETTSCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhc-CCEEEEeCCCCHHHHHH
Confidence             34555555554432221111 13455554555555544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.46  E-value=1.3e-06  Score=83.47  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      +|.|+|++||||||+++.|++.++.+  +++.|.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~--~~d~d~~~   37 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVP--YLSSGLLY   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCC--EEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc--eeccchHH
Confidence            89999999999999999999998844  47777663

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.45  E-value=1.2e-06  Score=85.71  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec-------chh----ccCC-CCcHH-----------HHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-------DTI----NKGK-SGTKV-----------QCLTSASS   73 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~-------D~i----~~~~-~~~~~-----------~~~~~~~~   73 (611)
                      |...|++-|+.||||||+++.|.+.+..  .......       +.+    .++. .....           .+...+..
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p   80 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP   80 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999987742  2222210       111    1221 11111           12245667


Q ss_pred             HHHCCCcEEEecCCC------------CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           74 ALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +|..|+.||.|....            .......+... .....+=.+|+|++|.+++.+|+.+|+.
T Consensus        81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~  147 (205)
T 4hlc_A           81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR  147 (205)
T ss_dssp             HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred             HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence            889999999998322            11222222222 1111222588999999999999988865

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.42  E-value=1.9e-06  Score=85.02  Aligned_cols=152  Identities=18%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeec------------chhc--c----CCCCcHH-----------HH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ------------DTIN--K----GKSGTKV-----------QC   67 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~------------D~i~--~----~~~~~~~-----------~~   67 (611)
                      +.+|++.|++||||||+++.|.+.+.   ..-+.+..            +.+.  .    .......           .+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~   82 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   82 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence            57899999999999999999987653   21122221            1112  1    1122111           11


Q ss_pred             HHHHHHHHHCCCcEEEecCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCC
Q 007244           68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG  134 (611)
Q Consensus        68 ~~~~~~~L~~Gk~VIID~tnl~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~  134 (611)
                      ...+..+|..|..||.|....+            ......+-.. .....+-.+|+|++|.+++.+|+.+|.....  ..
T Consensus        83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr--~E  160 (213)
T 4tmk_A           83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDR--IE  160 (213)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCT--TT
T ss_pred             HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccc--hh
Confidence            2456778999999999983222            1222112122 1112233688999999999999999864211  11


Q ss_pred             CCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          135 GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       135 ~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      ....+.+++....+......  +.++++++....++++...
T Consensus       161 ~~~~~f~~rv~~~y~~la~~--~~~~~vIDa~~s~eeV~~~  199 (213)
T 4tmk_A          161 QESFDFFNRTRARYLELAAQ--DKSIHTIDATQPLEAVMDA  199 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHT--CTTEEEEETTSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH--CCcEEEECCCCCHHHHHHH
Confidence            11234444544443221111  1345555555555555443

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.38  E-value=1.2e-06  Score=87.80  Aligned_cols=153  Identities=16%  Similarity=0.177  Sum_probs=78.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeec--------c----hhcc----CCCCcHHH-----------HH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--------D----TINK----GKSGTKVQ-----------CL   68 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~--------D----~i~~----~~~~~~~~-----------~~   68 (611)
                      ++.+|+|.|++||||||+++.|.+.+.   ...+.+..        .    .+..    .......+           +.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~  105 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE  105 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999987764   22122221        1    1111    11221111           11


Q ss_pred             HHHHHHHHCCCcEEEecCC------------CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCC
Q 007244           69 TSASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGG  135 (611)
Q Consensus        69 ~~~~~~L~~Gk~VIID~tn------------l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~  135 (611)
                      ..+..+|..|+.||.|...            +.......+... .....+-.+|+|++|.+++.+|+.+|..... . ..
T Consensus       106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr-~-E~  183 (236)
T 3lv8_A          106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDR-I-EK  183 (236)
T ss_dssp             HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCT-T-TT
T ss_pred             HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcch-h-hh
Confidence            3466788999999999732            222222222222 1112233688999999999999998863111 1 11


Q ss_pred             CHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          136 KAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       136 vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      ...+.+.+..+.+......+. . +++++....++++...
T Consensus       184 ~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~~sieeV~~~  221 (236)
T 3lv8_A          184 MDISFFERARERYLELANSDD-S-VVMIDAAQSIEQVTAD  221 (236)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCT-T-EEEEETTSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHCC-C-EEEEeCCCCHHHHHHH
Confidence            124555555555432221111 1 4455544555555443

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.37  E-value=4.5e-06  Score=83.77  Aligned_cols=37  Identities=24%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      +..+|.|+|++||||||+++.|++.++  +..++.+.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~   62 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY   62 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence            456899999999999999999999988  4456665553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.36  E-value=2e-06  Score=83.72  Aligned_cols=35  Identities=23%  Similarity=0.558  Sum_probs=29.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +.+|.|+|+|||||||+++.|++.++  +.+++.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i   39 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAI   39 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcce
Confidence            45899999999999999999999888  556776665

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.36  E-value=8.1e-07  Score=89.75  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-C-cH--------H----HHH-HHHHHHHHC-CCcEEE
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-G-TK--------V----QCL-TSASSALKK-GKSVFL   83 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-~-~~--------~----~~~-~~~~~~L~~-Gk~VII   83 (611)
                      ...|+|+|+|||||||+++.|++.++  +.+++.|.+..... + ..        .    ... ..+.+.+.. ...||.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via  125 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVS  125 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence            56899999999999999999999998  55688777642211 1 00        0    111 223333333 344554


Q ss_pred             ec--CCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           84 DR--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        84 D~--tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      ++  +.+....+..+   +. +   .+|||++|.+++.+|+.+|
T Consensus       126 ~GgG~v~~~~~~~~l---~~-~---~vV~L~a~~e~l~~Rl~~~  162 (250)
T 3nwj_A          126 TGGGAVIRPINWKYM---HK-G---ISIWLDVPLEALAHRIAAV  162 (250)
T ss_dssp             CCGGGGGSHHHHHHH---TT-S---EEEEEECCHHHHHHHHHC-
T ss_pred             cCCCeecCHHHHHHH---hC-C---cEEEEECCHHHHHHHHhhc
Confidence            43  34444454443   32 3   4899999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.35  E-value=1e-06  Score=98.56  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhccC---C--CCcHH-----HHHHHHHHHH-HCCCcEE
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKG---K--SGTKV-----QCLTSASSAL-KKGKSVF   82 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~~---~--~~~~~-----~~~~~~~~~L-~~Gk~VI   82 (611)
                      .++.+|+|+|++||||||+++.|+..++    ..+..++.|.+...   .  +...+     ..+..+...+ ..+..+|
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi  446 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI  446 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            4568999999999999999999998765    23445788776431   1  11111     1112222223 3454555


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      ..........+..+.++ +..+ .+.+|++++|.++|.+|..
T Consensus       447 ~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          447 CAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             ECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred             EecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence            54433346667777777 6656 5779999999999999974

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=98.34  E-value=5.9e-08  Score=105.92  Aligned_cols=82  Identities=11%  Similarity=0.059  Sum_probs=65.1

Q ss_pred             ccccceeecccccccccc-cCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC-eEE
Q 007244          239 LEGQEITSLLSDAAGEEV-KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARL  316 (611)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~-i~i  316 (611)
                      ..+-|.+-|.|..+.+.. .+.+...=.+++.+|.+++++|||||.||||+||||.+ ++.|+++++.+|+.+++- +.+
T Consensus       405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~I  483 (670)
T 4gua_A          405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTI  483 (670)
T ss_dssp             EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEE
T ss_pred             ceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEE
Confidence            778898889998655433 23455566778899999999999999999999999987 689999999999997652 455


Q ss_pred             EEeec
Q 007244          317 VLVDL  321 (611)
Q Consensus       317 V~vd~  321 (611)
                      |+.|.
T Consensus       484 vcfDK  488 (670)
T 4gua_A          484 YCLDK  488 (670)
T ss_dssp             ECSCH
T ss_pred             EEecC
Confidence            54433

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.30  E-value=6.4e-07  Score=86.59  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=52.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCC-----CC--cH----------HHHHHHHHHHH-
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SG--TK----------VQCLTSASSAL-   75 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~-----~~--~~----------~~~~~~~~~~L-   75 (611)
                      ...+.+|.|+|++||||||+++.+...+   +.....++.|.+....     .+  ..          ..+.+.+...+ 
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~   98 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK   98 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence            4567899999999999999999998754   4445566677664210     11  11          11111111111 


Q ss_pred             ------------------------HCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           76 ------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        76 ------------------------~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                                              ..+..||+|+..+......     ...+   .+|++++|.+++++|+.+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~-----~~~d---~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWR-----PFFD---FVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTG-----GGCS---EEEEECCC------------
T ss_pred             cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHH-----hhcC---EEEEEeCCHHHHHHHHhcCC
Confidence                                    1245689999654422211     1122   48899999999999999986

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.30  E-value=1.4e-06  Score=84.79  Aligned_cols=98  Identities=11%  Similarity=0.072  Sum_probs=63.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-----C----CC---CcH----H------------------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----G----KS---GTK----V------------------   65 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-----~----~~---~~~----~------------------   65 (611)
                      ..+|.|.|++||||||+++.|++.++.+|  ++.+.++.     +    .+   .+.    .                  
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~--~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL--YSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCE--ECHHHHHHTTCC---------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCE--ECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            35899999999999999999999999665  67554421     0    00   000    0                  


Q ss_pred             HHHHHHHHHHH--CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           66 QCLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        66 ~~~~~~~~~L~--~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .....+.+.|.  ...++||++..      -.++ ++.. .....|||.+|.+++.+|+.+|..
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~------g~~v-l~~~-~~~~~V~L~A~~e~r~~R~~~~~~  139 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRC------AEEI-LSDN-PNMISAFILGDKDTKTKRVMEREG  139 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTT------HHHH-TTTC-TTEEEEEEEECHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECC------cchh-cCCC-CCeEEEEEECCHHHHHHHHHHHhC
Confidence            12234444566  66788998831      1121 2222 124688999999999999987743

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.30  E-value=7.4e-06  Score=79.41  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      |.+|+|+|++||||||+++.|++.++  +.+++.|.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC--CceecCChH
Confidence            56899999999999999999999988  555776655

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.30  E-value=4.7e-06  Score=87.72  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-----------------cC-------------CCCcHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KG-------------KSGTKVQC   67 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-----------------~~-------------~~~~~~~~   67 (611)
                      .++.+|+|+||+||||||++..|++.++  ..+|+.|.+.                 .+             .......+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F  115 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADF  115 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHH
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHH
Confidence            3457999999999999999999999988  5567766651                 00             01111222


Q ss_pred             ----HHHHHHHHHCCCcEEEecCCCCHHHHHHHHH------------------h-CCCCCeEEEEEEeCCHHHHHHHHHh
Q 007244           68 ----LTSASSALKKGKSVFLDRCNLEREQRTDFVK------------------L-GGPEVDVHAVVLDLPAKLCISRSVK  124 (611)
Q Consensus        68 ----~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~------------------l-~~~~~~v~vV~Ld~p~e~~~~Rl~~  124 (611)
                          ...+.+...+|+.+|+-+...  -..+.++.                  + ....+...+|+|+++.+++.+|+.+
T Consensus       116 ~~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  193 (339)
T 3a8t_A          116 RSLAGKAVSEITGRRKLPVLVGGSN--SFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAK  193 (339)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHh
Confidence                244555667888888876321  11111111                  1 1234567899999999999999998


Q ss_pred             ccc
Q 007244          125 RIE  127 (611)
Q Consensus       125 R~~  127 (611)
                      |..
T Consensus       194 R~~  196 (339)
T 3a8t_A          194 RVD  196 (339)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            854

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.25  E-value=6.6e-07  Score=86.79  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ....+|.|+|++||||||+++.|++.++  +.+|+.|.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~   46 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRI   46 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHH
Confidence            3457899999999999999999999878  566888777

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.25  E-value=7.5e-06  Score=79.47  Aligned_cols=145  Identities=15%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec-------chh----ccCCCCc----------HHHHHHHHHHHHHC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTI----NKGKSGT----------KVQCLTSASSALKK   77 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~-------D~i----~~~~~~~----------~~~~~~~~~~~L~~   77 (611)
                      +|++-|+.||||||.++.|.+.+   +..+.....       ..+    .......          +.+....+..+|..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~   81 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE   81 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            68899999999999999988765   333322211       111    1121111          11233667788999


Q ss_pred             CCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           78 GKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        78 Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      |..||.|......            .....+... .....+-.+|+|++|.+++.+|...|.+.+       ..+-+.+.
T Consensus        82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e-------~~ef~~rv  154 (197)
T 3hjn_A           82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFE-------KREFLERV  154 (197)
T ss_dssp             TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTC-------CHHHHHHH
T ss_pred             CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccc-------cHHHHHHH
Confidence            9999999843222            111222222 111123358899999999999976665421       12344444


Q ss_pred             HhhccCCCccCCccEEEEcCChhhHHHHHH
Q 007244          145 LQKKELPKLSEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~  174 (611)
                      .+.+......++ +++++++....++++..
T Consensus       155 ~~~y~~la~~~~-~~~~~IDa~~~~eeV~~  183 (197)
T 3hjn_A          155 REGYLVLAREHP-ERIVVLDGKRSIEEIHR  183 (197)
T ss_dssp             HHHHHHHHHHCT-TTEEEEETTSCHHHHHH
T ss_pred             HHHHHHHHHhCC-CCEEEEcCCCCHHHHHH
Confidence            443322111111 23555555455555544

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=98.24  E-value=2.4e-07  Score=90.13  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=66.2

Q ss_pred             CCchhhhhhHHHHHHhhc---CCCCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhccc
Q 007244          194 NPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQN  270 (611)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  270 (611)
                      ......++.|++..+++-   .+..+  |+.     .  .|.+.++   ++-|.+-|.|..  .. ...+...-.+|+..
T Consensus        76 AI~~aaG~~l~~ec~~l~~~~g~~~~--G~a-----~--iT~~~~L---~VIHtVGP~~~~--~~-~~~L~~~y~~~L~~  140 (193)
T 3ejg_A           76 ALDVYTKGKLQRLSKEHIGLAGKVKV--GTG-----V--MVECDSL---RIFNVVGPRKGK--HE-RDLLIKAYNTINNE  140 (193)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHCSCCT--TCE-----E--EEEETTE---EEEEEECCCSST--TH-HHHHHHHHHHHHHS
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCC--CCE-----E--EecCCCe---eEEEecCCCCCc--hH-HHHHHHHHHHHHHh
Confidence            344555777777776551   12222  222     1  2445555   788988888853  22 22222233334442


Q ss_pred             CCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecC
Q 007244          271 GSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLT  322 (611)
Q Consensus       271 ~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s  322 (611)
                           .+|||||+||||+||||.++||++++++++++     .+.||+++..
T Consensus       141 -----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~~-----~V~fv~f~~~  182 (193)
T 3ejg_A          141 -----QGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----EVKVFVYTDT  182 (193)
T ss_dssp             -----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCSS-----CEEEEECSHH
T ss_pred             -----cCceeecccccCCCCCCHHHHHHHHHHHHhcC-----eEEEEEcCHH
Confidence                 27999999999999999999999999999772     5666665433

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.22  E-value=2.1e-05  Score=77.71  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ...+.+|.|+|++||||||+++.|++.++  +..++.|.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~   50 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM   50 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCe
Confidence            45567899999999999999999999888  455776655

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.20  E-value=6e-08  Score=93.57  Aligned_cols=155  Identities=18%  Similarity=0.172  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCC-e--EEee---------cchhcc---CCC-----CcH-HHHH---------HHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARP-W--ARIC---------QDTINK---GKS-----GTK-VQCL---------TSA   71 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~-~--~~Is---------~D~i~~---~~~-----~~~-~~~~---------~~~   71 (611)
                      +|+|+|++||||||+++.|.+.++.. +  ..+.         .+.++.   +.+     ... ...+         ..+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   81 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI   81 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHH
Confidence            79999999999999999999877521 1  1111         222221   110     011 1111         123


Q ss_pred             HHHHHCCCcEEEecCCCCHHHHH-------------HH-HHhC----CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244           72 SSALKKGKSVFLDRCNLEREQRT-------------DF-VKLG----GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~~~R~-------------~~-~~l~----~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~  133 (611)
                      ...+..|..||+|+........+             .+ ..+.    .....-.+|+|++|.+++.+|+.+|..+.+.+.
T Consensus        82 ~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~  161 (214)
T 1gtv_A           82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA  161 (214)
T ss_dssp             HHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEEE
T ss_pred             HHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccccc
Confidence            44455678899999654321111             11 1211    112344688999999999999999865211000


Q ss_pred             C---CCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          134 G---GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       134 ~---~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      .   +...+...++...+........-..+++++....++++...+
T Consensus       162 ~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i  207 (214)
T 1gtv_A          162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHh
Confidence            0   112455555554443222111002345555555666665544

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.17  E-value=2.5e-06  Score=84.78  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeec--------c----hhcc-CCCCcHHHH-----------
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQ--------D----TINK-GKSGTKVQC-----------   67 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~--------D----~i~~-~~~~~~~~~-----------   67 (611)
                      ...++.+|++.|++||||||+++.|.+.+..    ....+..        +    .+.+ .......+.           
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999886542    2322121        1    1121 112222111           


Q ss_pred             HHHHHHHHHCCCcEEEecCCCCH------------HHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           68 LTSASSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        68 ~~~~~~~L~~Gk~VIID~tnl~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+.+..+|..|..||.|......            +....+... .. ..+=.+|+|++|.+++.+|+ +|.+
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr  167 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG  167 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc
Confidence            12356688999999999933211            111222222 22 22336889999999999998 5544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.14  E-value=1.3e-05  Score=80.14  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .+|.+|.|.|||||||||+++.|++.++  +.+++.|.+
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~g~~   43 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALG--ARYLDTGAM   43 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCCcH
Confidence            3567999999999999999999999988  555776655

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.11  E-value=1.5e-06  Score=87.29  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=25.0

Q ss_pred             cccccccccccc-ccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244            3 TDIDDTCKAKDE-EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus         3 ~~~~~~c~~~~~-~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+.-..|..... ....++.+|+|.|++||||||+++.|++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B            6 TPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -----------------CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cchhccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            345566765544 3345678999999999999999999999874

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.08  E-value=3.7e-06  Score=86.93  Aligned_cols=139  Identities=13%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Eee---------------------cchh----ccCCCCcHHH----
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RIC---------------------QDTI----NKGKSGTKVQ----   66 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~Is---------------------~D~i----~~~~~~~~~~----   66 (611)
                      ...+..|||+||   ||+|+.++|++.++..|. .|+                     .+.+    .++.+.++.+    
T Consensus        97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn  173 (292)
T 3tvt_A           97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN  173 (292)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence            455677899998   499999999998764331 121                     1111    1222222211    


Q ss_pred             ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHH
Q 007244           67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (611)
Q Consensus        67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi  141 (611)
                          -...+++.+..|+.+|+|.      +.+....+ .....++.+++.+++.+++.+|+..|+.       +..+.+.
T Consensus       174 ~YGT~~~~V~~~~~~gk~viLdi------d~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~-------e~~~~~~  240 (292)
T 3tvt_A          174 LYGTSVASVREVAEKGKHCILDV------SGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE-------EQAKKTY  240 (292)
T ss_dssp             EEEEEHHHHHHHHHHTCEEEECC------CTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT-------THHHHHH
T ss_pred             eeEEehHHHHHHHHcCCcEEEec------cchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc-------hhHHHHH
Confidence                1267888999999999999      45666656 3334445555556678888888776654       3455666


Q ss_pred             HHHHhhccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          142 NRMLQKKELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       142 ~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      .|+.+.-.  ...+.||.|+++++   ++.+...+
T Consensus       241 ~r~~k~e~--e~~~~fD~vIvNdd---le~a~~~l  270 (292)
T 3tvt_A          241 ERAIKMEQ--EFGEYFTGVVQGDT---IEEIYSKV  270 (292)
T ss_dssp             HHHHHHHH--HHTTTCSEEECCSS---HHHHHHHH
T ss_pred             HHHHHHHH--hhhhhCCEEEECcC---HHHHHHHH
Confidence            66554321  22456999887754   44444433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.08  E-value=9.8e-06  Score=78.51  Aligned_cols=121  Identities=23%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc--------CC-----CC---cHHHHHHHHHHHHHC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK--------GK-----SG---TKVQCLTSASSALKK   77 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~--------~~-----~~---~~~~~~~~~~~~L~~   77 (611)
                      .+++.+|.|+|++||||||+++.|...+.   .....|..|.+.-        +.     ..   ....+.. ....|..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~   97 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQR-LCHALKH   97 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHH-HHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHH-HHHHHhc
Confidence            46788999999999999999999987664   2244566554320        00     00   1111222 2233332


Q ss_pred             C--------------------------CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           78 G--------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        78 G--------------------------k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                      |                          ..+|+|+..+-. +-..|..+ ...+   .+|++++|.+++++|+.+|....+
T Consensus        98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~-de~~~~~l~~~~d---~~i~vd~~~~~~~~R~~~R~~~~g  173 (208)
T 3c8u_A           98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLF-DAPGWRDLTAIWD---VSIRLEVPMADLEARLVQRWLDHG  173 (208)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTB-CSTTGGGGGGTCS---EEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCceecccCCccccCCCCCceEEcCCCcEEEECCceecc-CCchhHHHHHhcC---EEEEEeCCHHHHHHHHHHHHHhcC
Confidence            2                          456777733211 00122223 2233   388999999999999999964222


Q ss_pred             CCCCCCHHHHHHHHHh
Q 007244          131 NLQGGKAAAVVNRMLQ  146 (611)
Q Consensus       131 ~~~~~vpeevi~rm~~  146 (611)
                          ...+++..++..
T Consensus       174 ----~t~~~~~~~~~~  185 (208)
T 3c8u_A          174 ----LNHDAAVARAQG  185 (208)
T ss_dssp             ----CCHHHHHHHHHT
T ss_pred             ----CCHHHHHHHHHh
Confidence                355666666553

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.08  E-value=1e-05  Score=80.30  Aligned_cols=100  Identities=6%  Similarity=-0.013  Sum_probs=63.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---------------CC-----CC-----------------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GK-----SG-----------------   62 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---------------~~-----~~-----------------   62 (611)
                      +.+|.+.|++||||||+++.|++.++  +..++.|.+..               ++     +.                 
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG--IHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHCC------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC--CcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence            46999999999999999999999999  44577665521               00     00                 


Q ss_pred             -----cHHHH---HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           63 -----TKVQC---LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        63 -----~~~~~---~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                           ..+.+   ...+.+.|....++||+++.-  ..   .+.. +.. .....|||.+|.+++.+|+.+|..
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grgg--g~---vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~  159 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAA--GY---VLDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDC  159 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHSCEEEESTTH--HH---HHHHCTTC-CEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCc--ch---hcccccCC-CCeEEEEEECCHHHHHHHHHHhcC
Confidence                 00011   123344455455788887421  11   1111 222 235689999999999999987754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.04  E-value=2.1e-05  Score=77.14  Aligned_cols=139  Identities=12%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch----------------------hc----cCCCCcH----HH-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----------------------IN----KGKSGTK----VQ-   66 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~----------------------i~----~~~~~~~----~~-   66 (611)
                      +++.++.|+||+||||||+++.|...++ ..+.+..+.                      +.    .+.+...    .. 
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   99 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF   99 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence            3467899999999999999999988663 111221110                      00    0000000    00 


Q ss_pred             ---HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        67 ---~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                         -...+.+.+..+..+++|. .+..-++++  .. . ......+++-+++..++.+|+..|..       ...+.+.+
T Consensus       100 ~g~~~~~i~~~l~~~~~~il~~-~lsggq~qR--~~i~-~~~~~~~ll~~~~~~~Lde~~~~~d~-------~~~~~i~~  168 (218)
T 1z6g_A          100 YGTLKSEYDKAKEQNKICLFEM-NINGVKQLK--KSTH-IKNALYIFIKPPSTDVLLSRLLTRNT-------ENQEQIQK  168 (218)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEEE-CHHHHHHHT--TCSS-CCSCEEEEEECSCHHHHHHHHHHTCC-------CCHHHHHH
T ss_pred             CCCcHHHHHHHHhCCCcEEEEe-cHHHHHHHH--HHhc-CCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHH
Confidence               0134667788888888873 222222221  11 1 01123444446888999999998876       34455555


Q ss_pred             HHHhhccCCCc--cCCccEEEEcCChhh
Q 007244          143 RMLQKKELPKL--SEGFSRITLCQNEND  168 (611)
Q Consensus       143 rm~~~~e~P~~--~EgFd~V~vv~~~~e  168 (611)
                      ++.........  ...|+.|+++++.++
T Consensus       169 ~l~~~~~~~~~~h~~~~d~iiv~~~~~e  196 (218)
T 1z6g_A          169 RMEQLNIELHEANLLNFNLSIINDDLTL  196 (218)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECSSHHH
T ss_pred             HHHHHHHHHHhhcccCCCEEEECCCHHH
Confidence            55433211111  267888988865443

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.02  E-value=5.5e-06  Score=81.92  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc----h----h----ccCC--CCcHH----------HHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----T----I----NKGK--SGTKV----------QCLTSASSA   74 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D----~----i----~~~~--~~~~~----------~~~~~~~~~   74 (611)
                      ++.+|++.|++||||||+++.|.+.++.....+...    .    +    .+..  ...+.          +....+..+
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~pa   83 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD   83 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999987532222110    0    1    1111  11111          112456778


Q ss_pred             HHCCCcEEEecCCCCHHHHH----------HHHH-h-CCCCCeEEEEEE-eCCHHHHHHHHHhc
Q 007244           75 LKKGKSVFLDRCNLEREQRT----------DFVK-L-GGPEVDVHAVVL-DLPAKLCISRSVKR  125 (611)
Q Consensus        75 L~~Gk~VIID~tnl~~~~R~----------~~~~-l-~~~~~~v~vV~L-d~p~e~~~~Rl~~R  125 (611)
                      |..|..||.|......-..+          .|+. + .....+=.+|+| ++|.+++.+|...|
T Consensus        84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~  147 (216)
T 3tmk_A           84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG  147 (216)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred             HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence            89999999999443322111          1222 2 221123368899 99999999887544

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.02  E-value=1.4e-05  Score=83.01  Aligned_cols=127  Identities=10%  Similarity=0.053  Sum_probs=81.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE---eecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR---ICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~---Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R   93 (611)
                      ...+.-|||+||   ||+|+.++|++.++..|..   ++.| +.++.+..    ...+++.+..|+.+|+|.      +.
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~~r~-i~~~~fis----~~~V~~vl~~Gk~~ILDI------d~  207 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETVSRT-DSPSKIIK----LDTVRVIAEKDKHALLDV------TP  207 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------CCC----HHHHHHHHHTTCEEEECC------CH
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccccccc-ccCCCeec----HHHHHHHHHCCCcEEEEE------CH
Confidence            445566899999   7999999999998865532   2233 44455543    367788899999999999      77


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CCCccCCccEEE-EcCC
Q 007244           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRIT-LCQN  165 (611)
Q Consensus        94 ~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P~~~EgFd~V~-vv~~  165 (611)
                      +....+ .....++.+++.+++.+++.+| ..|...      +. ++.+++++++..  +-.....||+|+ ++++
T Consensus       208 QGa~~lk~~~~~pi~IFI~PPS~eeL~~r-r~R~~~------es-ee~~~r~~~aa~eiE~~~~~~FD~vI~VNDd  275 (308)
T 3kfv_A          208 SAIERLNYVQYYPIVVFFIPESRPALKAL-RQWLAP------AS-RRSTRRLYAQAQKLRKHSSHLFTATIPLNGT  275 (308)
T ss_dssp             HHHHHHHHTTCCCEEEEEEESCHHHHHHH-HHHHST------TC-CCCHHHHHHHHHHHHHHHGGGCSEEEEECSS
T ss_pred             HHHHHHHhcCCCCEEEEEeCCCHHHHHHH-HhcCCC------CC-HHHHHHHHHHHHHHHHhhhccCcEEEEcCCC
Confidence            777777 4444556777778889999887 555431      11 123455544321  122346699999 6754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.94  E-value=3.4e-05  Score=80.75  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +|+.+|+|+||+||||||+++.|++.++  ..+|+.|.+
T Consensus         3 ~m~~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~   39 (323)
T 3crm_A            3 SLPPAIFLMGPTAAGKTDLAMALADALP--CELISVDSA   39 (323)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence            4678999999999999999999999988  566777654

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.93  E-value=9.4e-06  Score=83.92  Aligned_cols=137  Identities=14%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE----Ee------------------ecchh----ccCCCCcHHH----
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWA----RI------------------CQDTI----NKGKSGTKVQ----   66 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~----~I------------------s~D~i----~~~~~~~~~~----   66 (611)
                      ...+.+|+|+||   ||+|+.++|.+.++..+.    +.                  +.+.+    .++.+.++.+    
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~  178 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH  178 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence            345678999998   799999999987642221    11                  21111    1222222111    


Q ss_pred             ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244           67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAV  140 (611)
Q Consensus        67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeev  140 (611)
                          -...+.+.+..|+.+|+|.      +++.+..+ ...-++ ++||+.+ +.+++.+ +..|.+         .+++
T Consensus       179 ~YGt~~~~V~~~~~~G~~vildi------d~~g~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t---------~~~i  241 (295)
T 1kjw_A          179 LYGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRIT---------EEQA  241 (295)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEECC------CTTHHHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSC---------HHHH
T ss_pred             EeeeeHHHHHHHHhcCCeEEEEe------CHHHHHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCC---------HHHH
Confidence                1155788899999999998      34444333 222233 4556654 4677666 766654         2334


Q ss_pred             HHHHHhhc-cCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          141 VNRMLQKK-ELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       141 i~rm~~~~-e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      -+|+.+.. .+....+.||.+++++   +++.+...+
T Consensus       242 ~~rl~~a~~~e~~~~~~fd~vivNd---~le~a~~~l  275 (295)
T 1kjw_A          242 RKAFDRATKLEQEFTECFSAIVEGD---SFEEIYHKV  275 (295)
T ss_dssp             HHHHHHHHHHHHHHGGGCSEEECCS---SHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCeEEEECc---CHHHHHHHH
Confidence            34444432 1222345689886654   455555443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.90  E-value=2.6e-05  Score=81.59  Aligned_cols=108  Identities=19%  Similarity=0.167  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhcc--------CC---CC---cH-HHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINK--------GK---SG---TK-VQCLTSASSALK   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~--------~~---~~---~~-~~~~~~~~~~L~   76 (611)
                      ...|.+|.|+|++||||||+++.|...+.     .....++.|.+..        +.   ++   .. ...+......+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~  168 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIK  168 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhh
Confidence            56788999999999999999999987654     2356678777631        11   11   10 122233344555


Q ss_pred             CCC-c--------------------------EEEecCCCCHHHH-----HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           77 KGK-S--------------------------VFLDRCNLEREQR-----TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        77 ~Gk-~--------------------------VIID~tnl~~~~R-----~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      .|+ .                          +|+|+.++-...+     ..|..+ ...+   ..||+++|.+++++|..
T Consensus       169 ~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D---~~I~Vda~~d~~~~R~i  245 (321)
T 3tqc_A          169 SGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD---FSLFVDAQAQVIQKWYI  245 (321)
T ss_dssp             TTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS---EEEEEECCHHHHHHHHH
T ss_pred             ccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC---eEEEEECCHHHHHHHHH
Confidence            554 2                          4666644322110     001111 1122   38899999999999999


Q ss_pred             hccc
Q 007244          124 KRIE  127 (611)
Q Consensus       124 ~R~~  127 (611)
                      +|..
T Consensus       246 ~Rd~  249 (321)
T 3tqc_A          246 DRVL  249 (321)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9974

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.86  E-value=2.7e-05  Score=83.59  Aligned_cols=133  Identities=9%  Similarity=0.017  Sum_probs=82.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC-CcHH--HHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-GTKV--QCLTSASSALKKGKSVFLDRCNLEREQR   93 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~-~~~~--~~~~~~~~~L~~Gk~VIID~tnl~~~~R   93 (611)
                      +..+.+|||+||+|   +|+.++|++.++..|.. ..-.-+.++. +...  --...+++.+..|+.+|+|.      +.
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~-~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdI------d~  298 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQI-AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP  298 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE-CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCEEEECC------CH
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCcccccc-ccCCCCCcccCCccCCcCcHHHHHHHHHcCCEEEEEe------CH
Confidence            45778999999998   89999999988755533 2111111110 0000  02377889999999999999      67


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CCCccCCccEEEEcCChh
Q 007244           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRITLCQNEN  167 (611)
Q Consensus        94 ~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P~~~EgFd~V~vv~~~~  167 (611)
                      +....+ .....++.+++.+++.+++.+| ..|...      +. ++.+++++++..  +-.....||+|+++++.+
T Consensus       299 qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~~~------~s-~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~  367 (391)
T 3tsz_A          299 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRLCP------ES-RKSARKLYERSHKLRKNNHHLFTTTINLNSMN  367 (391)
T ss_dssp             HHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHHCS------SC-CCCHHHHHHHHHHHHHHHGGGCSEEEECCTTC
T ss_pred             HHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcCCC------CC-HHHHHHHHHHHHHHHHhccccCcEEEECCCcH
Confidence            776666 4444556666677788888886 555431      11 123344443321  222346799999987643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.84  E-value=9.7e-06  Score=83.42  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhcc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK   58 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~   58 (611)
                      ++.+|.|.|++||||||+++.|.+.++   ..+.+|+.|.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            467899999999999999999988765   3356788888763

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=97.83  E-value=1.9e-06  Score=82.58  Aligned_cols=69  Identities=9%  Similarity=-0.017  Sum_probs=48.8

Q ss_pred             cccceeecccccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 007244          240 EGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLV  319 (611)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~v  319 (611)
                      .+-|.+.|.|+.  . ....+...-.+|+..   .  .|||||+||||+||||.++|++++++++.+     ..+.++.+
T Consensus        92 ~VIH~vgP~~~~--~-~~~~L~~~y~~~L~~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f  158 (174)
T 2vri_A           92 NVFNVVGPRTGK--H-EHSLLVEAYNSILFE---N--GIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVY  158 (174)
T ss_dssp             EEEEEECCCSST--T-HHHHHHHHHHHHHHS---S--SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEEC
T ss_pred             EEEEEcCCCCCc--c-hHHHHHHHHHHHHhh---C--CcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEc
Confidence            788888888853  2 212222222334443   2  399999999999999999999999999965     45667665


Q ss_pred             ec
Q 007244          320 DL  321 (611)
Q Consensus       320 d~  321 (611)
                      +.
T Consensus       159 ~~  160 (174)
T 2vri_A          159 SS  160 (174)
T ss_dssp             SH
T ss_pred             CH
Confidence            43

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.81  E-value=0.00018  Score=69.16  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      ..++.+|.|+|++||||||+++.+...++..+..+++|.+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            35678999999999999999999998765224457777653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.75  E-value=0.00011  Score=75.86  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i   56 (611)
                      ...+.+|.|+|++||||||+++.|...++     .....++.|.+
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            36678999999999999999999988654     22445665554

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.73  E-value=3.9e-05  Score=84.08  Aligned_cols=132  Identities=8%  Similarity=0.002  Sum_probs=79.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHH---HHHHHHHHHHHCCCcEEEecCCCCHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---QCLTSASSALKKGKSVFLDRCNLEREQR   93 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~---~~~~~~~~~L~~Gk~VIID~tnl~~~~R   93 (611)
                      +..+.+|||+||+|+|   +.++|++.++..|...... -+.++.--..   .-...+++.+..|+.+|+|.      +.
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdI------d~  290 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAKSE-PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TP  290 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCCB-C----------CBCCHHHHHHHHTTTCEEEECC------CH
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeecCC-CCCcccccccCCcccHHHHHHHHHCCCeEEEEe------CH
Confidence            4577899999999999   9999999887555332211 1221100000   12377889999999999999      66


Q ss_pred             HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CCCccCCccEEEEcCCh
Q 007244           94 TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRITLCQNE  166 (611)
Q Consensus        94 ~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P~~~EgFd~V~vv~~~  166 (611)
                      +....+ .....++.+++.+++.+++.+| .+|...      +. ++.+++++++..  +-.....||+|+++++.
T Consensus       291 qg~~~l~~~~~~p~~IFI~PPS~e~L~~~-~~rl~~------~s-ee~~~r~~~~a~~~e~~~~~~fD~vIvNddl  358 (468)
T 3shw_A          291 NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRLCP------ES-RKSARKLYERSHKLRKNNHHLFTTTINLNSM  358 (468)
T ss_dssp             HHHHHHHHTTCCCEEEEEECSCHHHHHHH-HHHHCT------TC-CCCHHHHHHHHHHHHHHHGGGCSEEEECBTT
T ss_pred             HHHHHHHhcCCCCEEEEEeCcCHHHHHHH-HhccCC------CC-HHHHHHHHHHHHHHHHhhhccCCEEEECCCc
Confidence            776666 3334455666667777888764 333321      11 123444444321  22335679999998654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.72  E-value=0.00051  Score=71.51  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=32.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ...+|.+|+|+||+||||||++..|++.++  ..+|+.|..
T Consensus         6 ~~~~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~   44 (316)
T 3foz_A            6 KASLPKAIFLMGPTASGKTALAIELRKILP--VELISVDSA   44 (316)
T ss_dssp             -CCCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTT
T ss_pred             cCCCCcEEEEECCCccCHHHHHHHHHHhCC--CcEEecccc
Confidence            456788999999999999999999999987  556776653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.66  E-value=0.00058  Score=71.20  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ++.+|+|+||+||||||++..|++.++  ..+|+.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence            356899999999999999999999987  556777755

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=97.66  E-value=1.9e-05  Score=73.57  Aligned_cols=66  Identities=12%  Similarity=0.061  Sum_probs=47.3

Q ss_pred             cccccceeecc-cccccccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHH
Q 007244          238 CLEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (611)
Q Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~  305 (611)
                      ...+-|.+.+. |..  ....+.....-..++..+.+++++|||||+||||+||||.++++++|.+++.
T Consensus        72 ~~~Vih~v~~~~~~~--~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~  138 (149)
T 2eee_A           72 GRYIYYLITKKRASH--KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE  138 (149)
T ss_dssp             SSEEEEEEEESSTTS--CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred             CCEEEEEEecCCCCC--CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence            45677777776 432  1111222233444567788889999999999999999999999999987664

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.65  E-value=0.00016  Score=69.85  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .-.+..++.|+||+||||||+++.+...+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345667999999999999999999988764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.59  E-value=0.00051  Score=68.11  Aligned_cols=28  Identities=36%  Similarity=0.596  Sum_probs=25.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++.+|.|+|++||||||+++.++..++
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4568999999999999999999988766

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.56  E-value=7.3e-05  Score=73.89  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +|.+|++.|++||||||+++.|++.+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367999999999999999999999884

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.55  E-value=0.00014  Score=74.58  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV   65 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~   65 (611)
                      ...|..++|.||||+|||++|+.+++.++.+++.++...+...+.+...
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~   81 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPA   81 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhH
Confidence            4557789999999999999999999999988888887777666655443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.55  E-value=0.00028  Score=74.33  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      |+.+|+|+||+||||||+|+.|++.++  ..+|+.|.+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence            457999999999999999999999988  667888776

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.53  E-value=0.00011  Score=72.28  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=24.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..++.+|.|.|++||||||+++.|...
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            456789999999999999999998876

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.50  E-value=0.00028  Score=73.91  Aligned_cols=129  Identities=14%  Similarity=0.056  Sum_probs=78.8

Q ss_pred             EEEEcCCCCcHHH-------HHHHHHHHcCCC--eEEeecchhccC-----------------CCCcHHHHHHHHHH---
Q 007244           23 VIMVGAPGSGKST-------FCEHVMRSSARP--WARICQDTINKG-----------------KSGTKVQCLTSASS---   73 (611)
Q Consensus        23 IvLvG~PGSGKST-------~A~~L~~~~~~~--~~~Is~D~i~~~-----------------~~~~~~~~~~~~~~---   73 (611)
                      |+|+||.+.|=-+       +...+.++++..  +.++..|.-..+                 ......++...+.+   
T Consensus       145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~  224 (337)
T 4dey_A          145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE  224 (337)
T ss_dssp             EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred             eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence            8999999999764       555566788755  444444332111                 11122334344444   


Q ss_pred             HHHCCCcEEEecCCCCHHHHH-HHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH-Hhhc-c
Q 007244           74 ALKKGKSVFLDRCNLEREQRT-DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM-LQKK-E  149 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl~~~~R~-~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm-~~~~-e  149 (611)
                      ..+.|+.||+|.      +.+ +...+ +.....+.+++.+++.+++.+|+..|++.       . ++.+.+. .+.- +
T Consensus       225 v~~~Gk~vILDI------DvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~-------~-~~rl~~al~~ae~E  290 (337)
T 4dey_A          225 LARTLQLVVLDA------DTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKS-------Q-AKHLNVQMVAADKL  290 (337)
T ss_dssp             HTTTCCEEEEEE------TTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHH-------H-HTTHHHHHHHHHHH
T ss_pred             HHhCCCEEEEEe------CcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCch-------H-HHHHHHHHHHHHHH
Confidence            445889999999      565 66666 55555666777788899999999999762       1 2222222 2211 1


Q ss_pred             CCCccCCccEEEEcCC
Q 007244          150 LPKLSEGFSRITLCQN  165 (611)
Q Consensus       150 ~P~~~EgFd~V~vv~~  165 (611)
                      .-.....||+|+++++
T Consensus       291 ~~~~~~~FDyvIVNDd  306 (337)
T 4dey_A          291 AQCPPELFDVILDENQ  306 (337)
T ss_dssp             HHSCGGGCSEEECCSS
T ss_pred             HhhCcccCCEEEECCC
Confidence            2223567999988854

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.50  E-value=0.00038  Score=80.26  Aligned_cols=137  Identities=14%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEe-ecchh----ccCCCCcHHH----
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARI-CQDTI----NKGKSGTKVQ----   66 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~---------------------~~I-s~D~i----~~~~~~~~~~----   66 (611)
                      ..++.+|||+||   ||+|+.++|++.+...+                     ..+ +.+.+    .++.+.++.+    
T Consensus       528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~  604 (721)
T 2xkx_A          528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH  604 (721)
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence            345688999999   39999999998764211                     112 22222    1233332211    


Q ss_pred             ----HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeC-CHHHHHHHHHhcccccCCCCCCCHHHH
Q 007244           67 ----CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAV  140 (611)
Q Consensus        67 ----~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~Rl~~R~~~~g~~~~~vpeev  140 (611)
                          -...+++.++.|+.+|+|.      +++.+..+ ...-++ ++||+.+ +.+++.+ +..|.+         .+++
T Consensus       605 ~YGt~~~~v~~~~~~g~~~ildi------~~~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t---------~~~~  667 (721)
T 2xkx_A          605 LYGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRIT---------EEQA  667 (721)
T ss_pred             cceeeHHHHHHHHHCCCcEEEeC------CHHHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCC---------HHHH
Confidence                1256888999999999998      45555444 222233 4556655 4566655 777754         2344


Q ss_pred             HHHHHhhc-cCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          141 VNRMLQKK-ELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       141 i~rm~~~~-e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      -+|+.+.. .+....+.||++++++   +++.+...+
T Consensus       668 ~~rl~~a~~~e~~~~~~fd~vi~Nd---~l~~a~~~l  701 (721)
T 2xkx_A          668 RKAFDRATKLEQEFTECFSAIVEGD---SFEEIYHKV  701 (721)
T ss_pred             HHHHHHHHHHHHhccccCcEEEECc---CHHHHHHHH
Confidence            45555442 2333456799987764   455554443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00017  Score=78.52  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL   75 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L   75 (611)
                      -..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+.....+..+....
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A  270 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA  270 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHH
Confidence            45677899999999999999999999999888889888888888887665544444333

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.00015  Score=78.01  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~   76 (611)
                      -..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+..+..+..+....+
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar  238 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR  238 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH
Confidence            445677999999999999999999999998888899888888888877665544444443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.00018  Score=77.98  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=45.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~   72 (611)
                      -..|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....+..+.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF  258 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVF  258 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHH
Confidence            45577899999999999999999999999888888888887778777655444333

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.00015  Score=78.73  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=46.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~   72 (611)
                      -+.|.-|+|.||||+|||++|++++.+++.++..++...+...+.+.....+..+.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF  267 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAF  267 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHH
Confidence            45578899999999999999999999999888889988888888887665444433

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00025  Score=76.82  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK   77 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~   77 (611)
                      -+.|.=|+|.||||+|||++|++++.+++.++..++...+...+.+..+..+..+....+.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~  273 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE  273 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence            3556789999999999999999999999988888998888888888776655444444433

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00022  Score=77.84  Aligned_cols=59  Identities=14%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL   75 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L   75 (611)
                      -..|.-|+|.||||+|||++|++++.+++.++..++...+...+.+..+..+..+....
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A  298 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA  298 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999888889988888888887766554444333

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.39  E-value=0.00035  Score=70.19  Aligned_cols=69  Identities=17%  Similarity=0.300  Sum_probs=48.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEecC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC   86 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~t   86 (611)
                      ..+.-++|.|+||+||||+|+.+++.++.++..++...+.....+........+...+..+  ..++||..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  119 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI  119 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECH
Confidence            3455689999999999999999999999888778777776665555444433333333333  34677763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.21  E-value=0.00077  Score=66.46  Aligned_cols=69  Identities=17%  Similarity=0.261  Sum_probs=44.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH-HHHHHC-CCcEEEecC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA-SSALKK-GKSVFLDRC   86 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~-~~~L~~-Gk~VIID~t   86 (611)
                      ..+.-++|.|+||+||||+|+.+++.++.++..++...+.....+........+ ..+... +..++||..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDei  107 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEI  107 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            345568999999999999999999999988877776555443333322222222 222222 234667764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.20  E-value=0.00068  Score=68.55  Aligned_cols=68  Identities=15%  Similarity=0.324  Sum_probs=47.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC   86 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~t   86 (611)
                      .+.-++|.||||+||||+|+.++..++.++..++...+.....+........+.....  .+..++||..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  122 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV  122 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence            4567899999999999999999999987777777666655555544443333333332  2345778873

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.17  E-value=0.00057  Score=70.61  Aligned_cols=68  Identities=15%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEecC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC   86 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~t   86 (611)
                      .+.-|+|.||||+|||++|+.+++..+.+++.++...+...+.+........+.......  ..++||..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi  119 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV  119 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechh
Confidence            356799999999999999999999999888888877776666666555444444333333  35777873

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.17  E-value=0.00085  Score=66.54  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=33.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS   61 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~   61 (611)
                      |.-++|.|+||+||||+|+.++..++.+++.++...+.....
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~   86 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV   86 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhh
Confidence            445899999999999999999999887787777655544333

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.15  E-value=0.00061  Score=70.69  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC--CcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G--k~VIID~   85 (611)
                      ..+.-|+|.||||+|||++|+.++..+ +..+..++...+...+.+........+.......  ..++||.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDE  113 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE  113 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEET
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeec
Confidence            345779999999999999999999998 6667777766665555555444444333333322  3577886

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.14  E-value=0.0024  Score=64.60  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC---
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN---   87 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-------~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn---   87 (611)
                      ..+.-++|.|+||+|||++|+.+++.++       .++..++...+.....+........+... ..+..++||...   
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-~~~~vl~iDEid~l~  143 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR-AMGGVLFIDEAYYLY  143 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHH-HTTSEEEEETGGGSC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHh-cCCCEEEEEChhhhc
Confidence            4445689999999999999999888763       25677777776655555443322222222 246678899853   


Q ss_pred             -------CCHHHHHHHHHh-CCCCCeEEEEEEe
Q 007244           88 -------LEREQRTDFVKL-GGPEVDVHAVVLD  112 (611)
Q Consensus        88 -------l~~~~R~~~~~l-~~~~~~v~vV~Ld  112 (611)
                             ........++.+ ......+.+|...
T Consensus       144 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~  176 (309)
T 3syl_A          144 RPDNERDYGQEAIEILLQVMENNRDDLVVILAG  176 (309)
T ss_dssp             CCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred             cCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                   244444555555 3333333444443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.09  E-value=0.00096  Score=69.26  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i   56 (611)
                      ..++.+|.|+|++||||||+++.|...+.     .....+.+|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            56789999999999999999999887543     12455666654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.96  E-value=0.00083  Score=70.67  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=45.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC   86 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~t   86 (611)
                      +.-|+|.||||+|||++|+.++..++.+++.++...+...+.+........+.....  ....++||..
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi  152 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV  152 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEech
Confidence            456889999999999999999999998887787766655555544444433333333  2345778863

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.95  E-value=0.0015  Score=68.55  Aligned_cols=68  Identities=15%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHC--CCcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK--GKSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~--Gk~VIID~   85 (611)
                      ..+.-|+|.|+||+||||+|+.+++.++.+++.++...+...+.+........+......  +..++||.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE  184 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE  184 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            446679999999999999999999999888878887666655555444433333333332  34577886

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.95  E-value=0.00034  Score=65.63  Aligned_cols=81  Identities=15%  Similarity=0.064  Sum_probs=46.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhccCCCCcHHH-HHHHHHHHHHCCCcEEEecCC---CCH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRCN---LER   90 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~~~~~~~~~~-~~~~~~~~L~~Gk~VIID~tn---l~~   90 (611)
                      .+..++|+||||+||||+++.++..+    +.....++...+.......... ....+...+.....+|+|...   +..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~  116 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSD  116 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCH
Confidence            35789999999999999999988764    3233334433321100000000 001234456677789999853   456


Q ss_pred             HHHHHHHHh
Q 007244           91 EQRTDFVKL   99 (611)
Q Consensus        91 ~~R~~~~~l   99 (611)
                      ..+..+..+
T Consensus       117 ~~~~~l~~l  125 (180)
T 3ec2_A          117 WQRELISYI  125 (180)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.90  E-value=0.0019  Score=67.85  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=24.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      ++..|++-|+-||||||+++.|++.+..
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3579999999999999999999988753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.89  E-value=0.0014  Score=60.16  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=23.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+..++|+|+||+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345568999999999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.88  E-value=0.006  Score=60.96  Aligned_cols=36  Identities=28%  Similarity=0.609  Sum_probs=31.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      ...+.-++|.|+||+|||++|+.+++..+.+++.++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~   96 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   96 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            456778999999999999999999999887776664

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.85  E-value=0.0017  Score=65.94  Aligned_cols=40  Identities=23%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~   62 (611)
                      ++|.|||||||||+++.++...+..++.++...+...+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~   86 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG   86 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence            9999999999999999999988866666765555443333

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.84  E-value=0.021  Score=55.78  Aligned_cols=133  Identities=10%  Similarity=0.034  Sum_probs=72.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEee-cchhcc------C----------CCCc--HHH---HHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARIC-QDTINK------G----------KSGT--KVQ---CLTSASS   73 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~~Is-~D~i~~------~----------~~~~--~~~---~~~~~~~   73 (611)
                      ..++.+|+++|.|||||+|+|+.+.+.++. .+..++ .|.++.      +          .+.+  +..   +...++.
T Consensus         8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~   87 (202)
T 3ch4_B            8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ   87 (202)
T ss_dssp             CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence            346679999999999999999999886652 243444 233321      0          0010  001   1111111


Q ss_pred             ---------HHH--CCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           74 ---------ALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        74 ---------~L~--~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                               ++.  ....||||+ -........+...  .+..+.+|.+..+.++..+|...+...    . +..+    
T Consensus        88 ~d~~~~~~~~~~~~~~~~vII~d-vR~~~Ev~~fr~~--~g~~~~iirI~as~~~R~~Rg~~~~~~----~-Dd~e----  155 (202)
T 3ch4_B           88 ADPGFFCRKIVEGISQPIWLVSD-TRRVSDIQWFREA--YGAVTQTVRVVALEQSRQQRGWVFTPG----V-DDAE----  155 (202)
T ss_dssp             HCTTTTHHHHSBTCCCSEEEECC-CCSHHHHHHHHHH--HGGGEEEEEEEECHHHHHHTTCCCCTT----T-TTSH----
T ss_pred             cCchHHHHHHHHhcCCCcEEEeC-CCCHHHHHHHHHh--CCCcEEEEEEECCHHHHHHHhhhcccc----c-cccc----
Confidence                     111  113589988 3444444444333  233477899999999998884322220    0 1111    


Q ss_pred             HHHhhccCCCccCCccEEEEcCC
Q 007244          143 RMLQKKELPKLSEGFSRITLCQN  165 (611)
Q Consensus       143 rm~~~~e~P~~~EgFd~V~vv~~  165 (611)
                         ..+..... ..+|.++.++.
T Consensus       156 ---sE~gL~~~-~~~D~vI~Ndg  174 (202)
T 3ch4_B          156 ---SECGLDNF-GDFDWVIENHG  174 (202)
T ss_dssp             ---HHHTTTTC-CCCSEEEEECS
T ss_pred             ---cccCCCCC-CcCCEEEEeCC
Confidence               12334443 45788888874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.83  E-value=0.0026  Score=68.43  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=29.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      +.+|+|+||+||||||++..|++.++  ..+|+.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence            45899999999999999999999988  45677665

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.78  E-value=0.0015  Score=76.14  Aligned_cols=68  Identities=21%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC-C-cEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG-K-SVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G-k-~VIID~   85 (611)
                      ..|.=|+|.||||+|||++|+.++.+++.++..|+...+...+.+..+..+..+.+..+.. . .++||.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE  305 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  305 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence            4678899999999999999999999999888888877777777776665554444444333 2 345555

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.78  E-value=0.00071  Score=69.27  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D   54 (611)
                      ..+.-|+|.||||+||||+|+.++..++.+++.++..
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~   83 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP   83 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence            4566799999999999999999999988777666543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.73  E-value=0.0021  Score=71.19  Aligned_cols=63  Identities=3%  Similarity=0.060  Sum_probs=44.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~-----~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl   88 (611)
                      .++.+|+|+|+|||||||+|+.|++.++.     .+..++.|. .       ..+...+...++.|..||+...+.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-~-------~ei~~va~~~~~~G~~Vv~~~~sp  460 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-K-------TELLSLIQDFIGSGSGLIIPDQWE  460 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-C-------HHHHTTHHHHHHTTCEEEESSCCC
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-c-------HHHHHHHHHHHhcCCeEEEecCCH
Confidence            34578999999999999999999999874     235677766 1       112233445567787777765443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.69  E-value=0.0014  Score=60.32  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+..++|+|+||+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            335567999999999999999999876

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.63  E-value=0.0038  Score=68.53  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=34.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~   62 (611)
                      |.-|+|+||||+||||+|+.++...+.++..++...+.....+
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g   91 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG   91 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence            4458899999999999999999999988888876655544443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.62  E-value=0.0016  Score=60.14  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ....++|+|++|+||||+++.+....   +.....++...+...             ..+.....+|+|...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~lLilDE~~   93 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DAAFEAEYLAVDQVE   93 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GGGGGCSEEEEESTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HHHhCCCEEEEeCcc
Confidence            45678899999999999999998765   333444554433322             123445667888844

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.59  E-value=0.0037  Score=61.73  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=29.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      ++|.||||+||||+++.++...+..++.++...+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~   86 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   86 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence            89999999999999999999887677667654443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.58  E-value=0.0015  Score=66.88  Aligned_cols=91  Identities=10%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH------CCCcEEEecCCCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLE   89 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~------~Gk~VIID~tnl~   89 (611)
                      ....|.++++.|+||+||||+++.+++.++..+..++....     . ...+...+.....      ..+.+|||....-
T Consensus        44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l  117 (324)
T 3u61_B           44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS  117 (324)
T ss_dssp             TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C-HHHHHHHHHHHHhhcccCCCCeEEEEECCccc
Confidence            34567789999999999999999999998855655554221     1 2222233333333      2345888986543


Q ss_pred             --HHHHHHHHHh-CCCCCeEEEEEEe
Q 007244           90 --REQRTDFVKL-GGPEVDVHAVVLD  112 (611)
Q Consensus        90 --~~~R~~~~~l-~~~~~~v~vV~Ld  112 (611)
                        ......++.+ ......+.+|+..
T Consensus       118 ~~~~~~~~L~~~le~~~~~~~iI~~~  143 (324)
T 3u61_B          118 GLAESQRHLRSFMEAYSSNCSIIITA  143 (324)
T ss_dssp             GGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred             CcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence              4444455554 3322233344443

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=96.56  E-value=0.00039  Score=65.17  Aligned_cols=36  Identities=11%  Similarity=0.062  Sum_probs=30.5

Q ss_pred             cccCCCCCCCccccccCccCCCCCChHHHHHHHHHHH
Q 007244          268 NQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV  304 (611)
Q Consensus       268 ~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv  304 (611)
                      +..+.+++. |||||.||||+||||.+++++||.++.
T Consensus       111 ~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l  146 (158)
T 2fg1_A          111 ALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEEL  146 (158)
T ss_dssp             HHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHT
T ss_pred             HHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHh
Confidence            345666676 999999999999999999999887655

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.56  E-value=0.0027  Score=67.21  Aligned_cols=68  Identities=16%  Similarity=0.309  Sum_probs=43.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHH-HCC-CcEEEecC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KKG-KSVFLDRC   86 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L-~~G-k~VIID~t   86 (611)
                      .+.-|+|.|+||+|||++|+.++..++.+++.++...+...+.+........+.... ..+ ..++||..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEi  216 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQV  216 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECc
Confidence            356789999999999999999999999888778776665544443333333333322 223 35788874

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.52  E-value=0.0039  Score=68.67  Aligned_cols=68  Identities=21%  Similarity=0.279  Sum_probs=47.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCC--cEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk--~VIID~   85 (611)
                      ..+.-|+|.|+||+|||++|+.++...+.+++.++...+.....+........+......+.  .++||.
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDE  305 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  305 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecc
Confidence            44566899999999999999999999988888888766665555554433333333333332  466666

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.51  E-value=0.012  Score=63.95  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      .+|.+|+|+|++||||||++.+|+..+   +.....++.|.++
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            468999999999999999999987644   3445667777653

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.004  Score=64.44  Aligned_cols=104  Identities=11%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeec-----chhccCCCCcHHHHHHHHHHHH-HCCCcEEEecCCCCH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARICQ-----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER   90 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is~-----D~i~~~~~~~~~~~~~~~~~~L-~~Gk~VIID~tnl~~   90 (611)
                      +.+.+|+|=|.-||||||.+++|.+.++.. +.++..     ..++ .++      +......| ..|..||.|...+..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~-~~y------l~R~~~~LP~~G~IvIfDRswYs~  156 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG-QWY------FQRYVATFPTAGEFVLFDRSWYNR  156 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT-SCT------THHHHTTCCCTTCEEEEEECGGGG
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh-chH------HHHHHHhcccCCeEEEEECCcchH
Confidence            568999999999999999999999988754 322221     1111 111      12334456 789999999965544


Q ss_pred             H--HH-----------HHHHHh-------CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           91 E--QR-----------TDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        91 ~--~R-----------~~~~~l-------~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      -  +|           ..+..+       ...|..+..|||++|.++.++|+..|...
T Consensus       157 v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d  214 (304)
T 3czq_A          157 AGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD  214 (304)
T ss_dssp             TTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence            2  11           112121       22567888999999999999999888653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.48  E-value=0.0026  Score=59.89  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCCcHHHHHHHHHHHHH-------CCCcEEEecCC-CC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALK-------KGKSVFLDRCN-LE   89 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-------~Gk~VIID~tn-l~   89 (611)
                      ++|.|+||+||||+++.+++.+.     ..+..++...     ..........+...+.       .+..+|||... +.
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~  115 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT  115 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-----TTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-----ccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence            89999999999999999988642     2233333211     1122222233333332       22347888854 34


Q ss_pred             HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      ......+..+ ......+.+|+.--..+.+..++..|
T Consensus       116 ~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r  152 (226)
T 2chg_A          116 ADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR  152 (226)
T ss_dssp             HHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence            4445555555 33333334444433333333444444

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.46  E-value=0.0028  Score=68.87  Aligned_cols=48  Identities=15%  Similarity=0.324  Sum_probs=38.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQ   66 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~   66 (611)
                      .+.-++|.||||+|||++|+.+++.++  .++..++.-.+...+.+....
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~  111 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV  111 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence            345689999999999999999999998  678788877777666665544

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.46  E-value=0.0019  Score=70.12  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhccC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKG   59 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~-~~~~~~Is~D~i~~~   59 (611)
                      ..+.-|+|.||||+|||++|+.++..+ +.++..++...+...
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            345678999999999999999999998 666767776555433

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.43  E-value=0.0021  Score=65.99  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEe-ecchh
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARI-CQDTI   56 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~-----~~~~I-s~D~i   56 (611)
                      ....|.+|.|+|++||||||+++.|...++.     ....+ ++|.+
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            3567899999999999999999998876642     23344 88776

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.42  E-value=0.0025  Score=61.28  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=28.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i   56 (611)
                      .+..++|.|+||+||||+++.+++.+.   ..+..++...+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            456789999999999999999987654   34455554443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.36  E-value=0.0066  Score=61.01  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=29.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      ++|+|+||+||||+++.++...+..++.++...+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~  110 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV  110 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence            89999999999999999999887667667654443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.33  E-value=0.0044  Score=63.75  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC-CCHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV   97 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-l~~~~R~~~~   97 (611)
                      .+.-|+|.|+||+|||++|+.+++..+.++..++...+.     .. .....+...+..+..++||... +.......++
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll  127 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-----KS-GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLY  127 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----SH-HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----ch-hHHHHHHHhccCCCEEEEechhhcCHHHHHHHH
Confidence            344589999999999999999999998887777654432     11 1112222234456678888855 3344444444


Q ss_pred             Hh
Q 007244           98 KL   99 (611)
Q Consensus        98 ~l   99 (611)
                      ..
T Consensus       128 ~~  129 (338)
T 3pfi_A          128 PA  129 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.33  E-value=0.0037  Score=65.36  Aligned_cols=68  Identities=15%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn   87 (611)
                      ..+++|.|+||+||||||.+++...+.  .|+.+..+...+......+.....+.+.+.....+|||...
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~  192 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence            457899999999999999999875332  35443111110111122344455555666555588999843

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.32  E-value=0.0032  Score=73.32  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=47.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG   78 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~G   78 (611)
                      ..|.-|+|.||||+|||.+|+.++.+.+.+++.++...+...+.+..+..+..+.+..+..
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~  569 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA  569 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence            3456689999999999999999999999888888887887788877666555555444443

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=96.30  E-value=0.034  Score=59.16  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ......|+|-|+-||||||+++.|.+.+.
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34567899999999999999999988764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.28  E-value=0.003  Score=64.84  Aligned_cols=68  Identities=12%  Similarity=0.111  Sum_probs=41.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHH-HHHHHHHHHHHCCCcEEEecC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRC   86 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~-~~~~~~~~~L~~Gk~VIID~t   86 (611)
                      .+.-++|.|+||+||||+++.++..+   +..+..++...+......... .........+.....++||..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi  107 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV  107 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence            34568999999999999999999876   556666765444211000000 001222334455677888884

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.23  E-value=0.023  Score=51.39  Aligned_cols=89  Identities=20%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC-CCHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV   97 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-l~~~~R~~~~   97 (611)
                      -|+|.|+||+|||++|+.+....   +.+++ ++-..+...  .....   .+.  ...+..++||... +.......++
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~---~~~--~a~~g~l~ldei~~l~~~~q~~Ll   97 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLND---FIA--LAQGGTLVLSHPEHLTREQQYHLV   97 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHH---HHH--HHTTSCEEEECGGGSCHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhc---HHH--HcCCcEEEEcChHHCCHHHHHHHH
Confidence            47899999999999999998865   34566 654433322  11111   111  1356678888854 4444445555


Q ss_pred             Hh-CCCCCeE-EEEEEeCCHHHH
Q 007244           98 KL-GGPEVDV-HAVVLDLPAKLC  118 (611)
Q Consensus        98 ~l-~~~~~~v-~vV~Ld~p~e~~  118 (611)
                      .+ ......+ .+.-...+.+.+
T Consensus        98 ~~l~~~~~~~~~I~~t~~~~~~~  120 (145)
T 3n70_A           98 QLQSQEHRPFRLIGIGDTSLVEL  120 (145)
T ss_dssp             HHHHSSSCSSCEEEEESSCHHHH
T ss_pred             HHHhhcCCCEEEEEECCcCHHHH
Confidence            55 3333222 233345555543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.23  E-value=0.014  Score=63.43  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      .+|.+|+|+|++||||||++.+|+..+   +.....++.|.+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            468999999999999999999987543   444556676655

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.17  E-value=0.0069  Score=63.57  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +.-++|.|+||+||||+|+.+++.++.++..++...+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~  108 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL  108 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence            4568999999999999999999999888877765444

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.17  E-value=0.0096  Score=61.85  Aligned_cols=28  Identities=14%  Similarity=0.293  Sum_probs=24.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...+..++|.|+||+||||+++.+++.+
T Consensus        42 ~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999998875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.13  E-value=0.0058  Score=63.02  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...|. ++|+||||+||||+++.++..+
T Consensus        34 ~~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           34 RDLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             TCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            34456 8999999999999999998853

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.13  E-value=0.0044  Score=63.08  Aligned_cols=76  Identities=16%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC-CHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-EREQRTDFV   97 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl-~~~~R~~~~   97 (611)
                      .+..++|.|+||+||||+|+.+.+.++.++..++...+.     ....+...+...+..+..++||.... .......++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~  111 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLY  111 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----SHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----ChHHHHHHHHHhccCCCEEEEECCcccccchHHHHH
Confidence            345688999999999999999999888777666543331     12222222222244566788998553 333333444


Q ss_pred             Hh
Q 007244           98 KL   99 (611)
Q Consensus        98 ~l   99 (611)
                      .+
T Consensus       112 ~~  113 (324)
T 1hqc_A          112 PA  113 (324)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.13  E-value=0.0059  Score=57.93  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..+..++|.|+||+||||+++.+++.+.
T Consensus        43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           43 RIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456899999999999999999988764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.08  E-value=0.0046  Score=62.19  Aligned_cols=40  Identities=15%  Similarity=0.435  Sum_probs=33.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~   58 (611)
                      .+.-++|.|+||+|||++|+.+++.++.++..++...+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~   88 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   88 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence            4556889999999999999999999988887787655543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.05  E-value=0.0033  Score=59.72  Aligned_cols=121  Identities=13%  Similarity=0.060  Sum_probs=60.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc----CC-CCcHHHHHHHHHHHHHCCCcEEEecCCCCH--
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK----GK-SGTKVQCLTSASSALKKGKSVFLDRCNLER--   90 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~----~~-~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~--   90 (611)
                      ..++|.|+||+||||+++.+....   +..+..++...+..    .. ....    ..+...+.....+|||......  
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lilDei~~~~~~  130 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTM----NEKLDYIKKVPVLMLDDLGAEAMS  130 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCC----HHHHHHHHHSSEEEEEEECCC---
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchH----HHHHHHhcCCCEEEEcCCCCCcCC
Confidence            678999999999999999998765   33444455333211    00 0001    1223344455678999853322  


Q ss_pred             -HHHHH----HHHhC-CCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           91 -EQRTD----FVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        91 -~~R~~----~~~l~-~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                       .....    ++..+ ..+. ..++.-..+.+.+...+......  ..+....+.++.|+....
T Consensus       131 ~~~~~~ll~~~l~~~~~~~~-~~i~tsn~~~~~l~~~~~~~~~~--~~~~~~~~~~~~Rl~~~~  191 (202)
T 2w58_A          131 SWVRDDVFGPILQYRMFENL-PTFFTSNFDMQQLAHHLTYSQRG--EEEKVKAARIMERIRYLA  191 (202)
T ss_dssp             CCGGGTTHHHHHHHHHHTTC-CEEEEESSCHHHHHHHSCCCC-------CCHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CEEEEcCCCHHHHHHHHhhhccC--cchhHHHHHHHHHHHHhc
Confidence             11111    11111 1122 24555677788777664211000  000123466677776643

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.04  E-value=0.0079  Score=65.48  Aligned_cols=44  Identities=18%  Similarity=0.472  Sum_probs=34.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-CCCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG   62 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-~~~~   62 (611)
                      .+.-|+|.||||+||||+|+.+++.++.++..++...+.. ++.+
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG   93 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence            3456999999999999999999999998888887655544 4544

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.99  E-value=0.0048  Score=64.56  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .+.-|+|.||||+|||++|+.+++.++.+++.++.-.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l   87 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL   87 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence            45568999999999999999999999988877765443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.98  E-value=0.01  Score=61.25  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...+..++|.||||+||||+++.+++.+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3556789999999999999999998876

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=95.93  E-value=0.059  Score=56.39  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....|++-|+-||||||+++.|.+.+.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            356899999999999999999987654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.93  E-value=0.046  Score=56.51  Aligned_cols=33  Identities=24%  Similarity=0.536  Sum_probs=27.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEee
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC   52 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is   52 (611)
                      +..++|.||||+|||++|+.+++.++.  ++..++
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            468999999999999999999998873  454444

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.92  E-value=0.00091  Score=66.55  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=28.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .-++|.|+||+||||+|+.++...+.+++.++...+
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~   80 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF   80 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence            348899999999999999999998876655654443

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.91  E-value=0.0054  Score=58.83  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      +++++|++||||||||++++.. +.+..++....
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            4789999999999999999977 65655666533

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.84  E-value=0.017  Score=59.42  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=28.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEee
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARIC   52 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~------~~~~~~Is   52 (611)
                      ...+..++|.|+||+||||+++.+++..      +..++.++
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            3556789999999999999999998876      54455555

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.84  E-value=0.0063  Score=62.99  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=54.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-----eEEeecchhccCCCCcHHHHHHHHHHHHHC-------CCcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-----WARICQDTINKGKSGTKVQCLTSASSALKK-------GKSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-----~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~-------Gk~VIID~   85 (611)
                      ..|. ++|.||||+||||+++.+++.+...     +..++...    .. ....+...+......       .+.+|||.
T Consensus        45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~-~~~~ir~~i~~~~~~~~~~~~~~~viiiDe  118 (340)
T 1sxj_C           45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DR-GIDVVRNQIKDFASTRQIFSKGFKLIILDE  118 (340)
T ss_dssp             CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CC-SHHHHHTHHHHHHHBCCSSSCSCEEEEETT
T ss_pred             CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cc-cHHHHHHHHHHHHhhcccCCCCceEEEEeC
Confidence            3344 8999999999999999999875321     11222111    11 122232333333321       23467886


Q ss_pred             C-CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           86 C-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        86 t-nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      . .++......++++ ........++++.-....+...+..|-
T Consensus       119 ~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~  161 (340)
T 1sxj_C          119 ADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC  161 (340)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence            4 3455555556665 444333445555444444445555554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.83  E-value=0.013  Score=58.87  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=54.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCCcHHHHHHHHHHHH-------HCCCcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSAL-------KKGKSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L-------~~Gk~VIID~   85 (611)
                      ..+. ++|.|+||+||||+++.+++.+.     ..+..++........ ...    ..+....       ...+.+|||.
T Consensus        37 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~vliiDe  110 (319)
T 2chq_A           37 NIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID-VVR----HKIKEFARTAPIGGAPFKIIFLDE  110 (319)
T ss_dssp             CCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT-TSS----HHHHHHHHSCCSSSCCCEEEEEET
T ss_pred             CCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH-HHH----HHHHHHHhcCCCCCCCceEEEEeC
Confidence            3344 89999999999999999988751     123344432221111 011    1112221       1234588888


Q ss_pred             CC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           86 CN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        86 tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .. +.......++++ ......+.+|+.....+.+...+..|-
T Consensus       111 ~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~  153 (319)
T 2chq_A          111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC  153 (319)
T ss_dssp             GGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence            54 444555556666 554444555555444444444455553

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.83  E-value=0.029  Score=57.62  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchh
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI   56 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i   56 (611)
                      .++.+|+|+|++||||||++..|+..+    |.....++.|..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            457899999999999999999987543    334556777764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.82  E-value=0.027  Score=58.31  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++|+|+||+||||+++.++....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999998773

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.82  E-value=0.039  Score=60.99  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=29.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      .++.+|+|+|+||+||||++.+|+..+   +.....++.|.++
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            567899999999999999999998654   4445667776543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.78  E-value=0.0052  Score=66.55  Aligned_cols=67  Identities=12%  Similarity=0.102  Sum_probs=40.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhccCCCCcHH-HHHHHHHHHHH-CCCcEEEecC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKV-QCLTSASSALK-KGKSVFLDRC   86 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~-----~~~~~~Is~D~i~~~~~~~~~-~~~~~~~~~L~-~Gk~VIID~t   86 (611)
                      +.-++|.|+||+||||+++.++...     +..+..++...+......... .........+. ....++||..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi  203 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV  203 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence            5568999999999999999998865     445556665443211000000 00122334445 5667899984

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.76  E-value=0.011  Score=65.37  Aligned_cols=39  Identities=23%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK   60 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~   60 (611)
                      -++|+||||+||||+++.++...+.+++.++...+....
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~  104 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  104 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence            389999999999999999999988778778765554433

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.74  E-value=0.0043  Score=67.51  Aligned_cols=76  Identities=22%  Similarity=0.315  Sum_probs=43.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH--CCCcEEEecCCCCH-HHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCNLER-EQRTDFV   97 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~--~Gk~VIID~tnl~~-~~R~~~~   97 (611)
                      .-++|.||||+||||+|+.+++.++..+..++.....   .......+..+.....  .+..++||....-. .....++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL  127 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL  127 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence            4689999999999999999999988777666542211   0011122333333332  34568889865433 3444455


Q ss_pred             Hh
Q 007244           98 KL   99 (611)
Q Consensus        98 ~l   99 (611)
                      ..
T Consensus       128 ~~  129 (447)
T 3pvs_A          128 PH  129 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.68  E-value=0.0077  Score=57.42  Aligned_cols=36  Identities=22%  Similarity=0.156  Sum_probs=27.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      ++..+++|+|+||||||||+..++...+.....++.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            456799999999999999999998743433444544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.64  E-value=0.008  Score=62.37  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=27.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      .+..++|+||||+||||+++.++..++..+...+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s   83 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS   83 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            3467899999999999999999999875544343

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.60  E-value=0.026  Score=62.17  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=24.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++.+|+|+|++||||||+++.|+..+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            4568899999999999999999987643

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.60  E-value=0.0055  Score=55.53  Aligned_cols=69  Identities=14%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCC-CCHHHHHHHHHh
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFVKL   99 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tn-l~~~~R~~~~~l   99 (611)
                      -|+|.|+||+|||++|+.+..... +++.++...+....       .....+ ...+..+++|... +.......++++
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~-~a~~~~l~lDei~~l~~~~q~~Ll~~   98 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ-KAEGGVLYVGDIAQYSRNIQTGITFI   98 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH-HTTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH-hCCCCeEEEeChHHCCHHHHHHHHHH
Confidence            378899999999999999987665 56555533322111       111111 2345678888755 334444444444

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.58  E-value=0.0068  Score=61.18  Aligned_cols=103  Identities=12%  Similarity=0.033  Sum_probs=54.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhccCCCCcHHHHHHHHHHHHH------C--CCcEEEe
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALK------K--GKSVFLD   84 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~------~--Gk~VIID   84 (611)
                      ..|. ++|.|+||+||||+++.+++.+.     ..+..++...     ......+...+.....      .  .+.+|||
T Consensus        41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiD  114 (323)
T 1sxj_B           41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-----DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILD  114 (323)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-----CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred             CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-----ccChHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence            3445 89999999999999999988742     1233333211     1112223333333331      2  2457888


Q ss_pred             cCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           85 RCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        85 ~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      ... +.......++++ ......+.+|+..-+.+.+...+..|.
T Consensus       115 e~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~  158 (323)
T 1sxj_B          115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC  158 (323)
T ss_dssp             SGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             CcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence            854 344444445555 333333445554444444445555553

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.54  E-value=0.013  Score=60.69  Aligned_cols=41  Identities=22%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..++.+|+|+|++||||||++..++..+   +.....++.|.++
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            3568899999999999999999987654   3345566777654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.52  E-value=0.025  Score=58.39  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=25.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...+..++|.|+||+||||+++.+++.+.
T Consensus        35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566899999999999999999998765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.49  E-value=0.018  Score=62.44  Aligned_cols=40  Identities=35%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..|.+|+|+|+||+||||++.+|+..+   +.....++.|..+
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            457899999999999999999988754   2345667777553

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.49  E-value=0.0084  Score=58.57  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ....|+|+|+|||||||+|..|+++..   ..|+.|..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs~   67 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH---RLIADDRV   67 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC---eEEecchh
Confidence            356799999999999999999998754   45665544

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.47  E-value=0.0068  Score=61.28  Aligned_cols=99  Identities=15%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCC-----CeEEeecchhccCCCCcHHHHHHHHHHHHH-------CCCcEEEecCC-CC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALK-------KGKSVFLDRCN-LE   89 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~-----~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~-------~Gk~VIID~tn-l~   89 (611)
                      ++|.|+||+||||+++.+++.+..     .+..++.....     ........+.....       ....+|||... +.
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~  123 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPIGGASFKIIFLDEADALT  123 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH-----HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC-----chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence            899999999999999999887521     13333321110     00111122222221       23458888854 44


Q ss_pred             HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      ......++.+ ......+.+|+..-..+.+...+..|.
T Consensus       124 ~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~  161 (327)
T 1iqp_A          124 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC  161 (327)
T ss_dssp             HHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence            4555556665 443333444444433333444444443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.46  E-value=0.0071  Score=58.04  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...++.|+|++||||||+++.++..
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.45  E-value=0.11  Score=56.16  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~   57 (611)
                      .+|.+|+++|++|+||||++.+|+..+    +.....++.|..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            568899999999999999999987543    5556677877654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.38  E-value=0.0085  Score=56.84  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+.|+|++||||||+++.++..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988765

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=95.32  E-value=0.0091  Score=61.21  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-----chhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-----DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQ   92 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-----D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~   92 (611)
                      ..+.||+|-|.-||||++.++++.+.++...+.+-.     +.-...++.-     ......=..|..+|+|...+...-
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~~ylw-----R~~~~lP~~G~I~IFdRSwY~~vl  147 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSHDFLW-----RIEKQVPAAGMVGVFDRSQYEDVL  147 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTSCTTH-----HHHTTCCCTTCEEEEESCGGGGGT
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhcCCHHH-----HHHHhCCCCCeEEEEeCchhhhHh
Confidence            579999999999999999999999998855433321     1111111111     111222256888999996655521


Q ss_pred             H-------------HH------HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           93 R-------------TD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        93 R-------------~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                      .             ..      |-+. ...|+.++-++|++|.++..+|+..|...+
T Consensus       148 verV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP  204 (289)
T 3rhf_A          148 IHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP  204 (289)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence            1             11      1122 467888889999999999999999997754

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.25  E-value=0.061  Score=55.67  Aligned_cols=111  Identities=12%  Similarity=0.129  Sum_probs=61.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe---e--------------cchh--cc---CCCCcHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI---C--------------QDTI--NK---GKSGTKVQCLTSASS   73 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I---s--------------~D~i--~~---~~~~~~~~~~~~~~~   73 (611)
                      ....+..++|.|+||+||||+|+.+++.+......-   +              .|.+  ..   +.....+++ ..+.+
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~i-r~l~~   98 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAV-REVTE   98 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHH-HHHHH
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHH-HHHHH
Confidence            456678899999999999999999998765221000   0              0111  11   111122222 22333


Q ss_pred             HHH------CCCcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           74 ALK------KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        74 ~L~------~Gk~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+.      ..+.+|||... ++......+++. .+.+..+.+|++-...+.+...+..|-.
T Consensus        99 ~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~  160 (334)
T 1a5t_A           99 KLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR  160 (334)
T ss_dssp             HTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             HHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence            332      12457888743 445555667776 6655556666665554555556666643

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.24  E-value=0.057  Score=56.61  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=27.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~   53 (611)
                      -.+..|++|.|.||+|||||+..++..   .+.+...++.
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            345679999999999999999998764   3334445553

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.20  E-value=0.073  Score=56.02  Aligned_cols=127  Identities=14%  Similarity=0.069  Sum_probs=65.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEee-cchhccC-C-----CCc-H-------H--HHHHHHHHHHHCCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINKG-K-----SGT-K-------V--QCLTSASSALKKGK   79 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is-~D~i~~~-~-----~~~-~-------~--~~~~~~~~~L~~Gk   79 (611)
                      ...+++|+|++||||||+++.+...+..  ..+.++ .+.+... .     +.. .       .  .....+..++....
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p  253 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP  253 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence            4568999999999999999999876652  233333 1111110 0     000 0       0  12355666666665


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      .+++.+-.........+..+ ..+...+..+.- .+......|+......... -...+.+.++++...
T Consensus       254 d~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~-~~~~~~~~Rl~~l~~~~~~-~~~~~~~~i~~~l~~  320 (361)
T 2gza_A          254 TRILLAELRGGEAYDFINVAASGHGGSITSCHA-GSCELTFERLALMVLQNRQ-GRQLPYEIIRRLLYL  320 (361)
T ss_dssp             SEEEESCCCSTHHHHHHHHHHTTCCSCEEEEEC-SSHHHHHHHHHHHHTTSTT-GGGSCHHHHHHHHHH
T ss_pred             CEEEEcCchHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHH
Confidence            55554433333333323334 444433444443 4677788888765442100 013555666555543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.17  E-value=0.037  Score=56.67  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++|.||||+||||+++.+++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998774

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.15  E-value=0.011  Score=56.06  Aligned_cols=25  Identities=28%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+++++|++||||||++.+|+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.14  E-value=0.0099  Score=56.84  Aligned_cols=26  Identities=27%  Similarity=0.629  Sum_probs=22.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ++..+++|+|+|||||||+++.++..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            34579999999999999999998753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.12  E-value=0.013  Score=61.18  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      .++|.+|+|+|++||||||+++.|+..+   +........|..
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            3678999999999999999999987643   223334455543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.10  E-value=0.013  Score=60.26  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      -++|.|+||+|||++|+.+++.++.++..++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~   78 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ   78 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence            4889999999999999999999887766554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.09  E-value=0.016  Score=58.45  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=27.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecch
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDT   55 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~   55 (611)
                      ..++|.|+||+||||+|+.+++.+.   .++..++...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~   85 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   85 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence            5799999999999999999998763   3355565433

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.05  E-value=0.013  Score=55.70  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=22.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +..+++++|++||||||++++|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34578999999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.01  E-value=0.016  Score=53.95  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=24.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...++.|+|+.|||||||.+.++..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            566799999999999999999998875

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.00  E-value=0.059  Score=56.92  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=27.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      +...++.|.|+||||||||+.+++...   +.....|+.
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~   97 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA   97 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            346799999999999999999987653   333445554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.00  E-value=0.013  Score=60.43  Aligned_cols=27  Identities=33%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +++.+|.|+|++||||||+++.++..+
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            367899999999999999999988654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.00  E-value=0.047  Score=56.08  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      ++.+|+++|++|+||||++..++..+   +.....++.|..
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            38899999999999999999987654   445556776654

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.98  E-value=0.047  Score=57.37  Aligned_cols=28  Identities=25%  Similarity=0.288  Sum_probs=24.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHH-HHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFC-EHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A-~~L~~~~~   45 (611)
                      .....|+|-|+-||||||++ +.|.+.++
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~   38 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI   38 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            44679999999999999999 99888665

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.93  E-value=0.016  Score=63.84  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      .+..++|.||||+||||+|+.+++.++..+..++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~  110 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA  110 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence            45689999999999999999999999866655553

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=94.92  E-value=0.013  Score=64.61  Aligned_cols=108  Identities=9%  Similarity=0.017  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe-e----cchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-C----QDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLERE   91 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I-s----~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~   91 (611)
                      .+.+.||+|=|.-||||+|.+++|.+.++.....+ .    .+.-...++. +    ......=..|..+|.|...++.-
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl-~----R~~~~lP~~G~IvIfdRSwYs~~  114 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQ-W----RFWRRLPPKGRTGIFFGNWYSQM  114 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTT-H----HHHHHCCCTTCEEEEESCHHHHH
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChh-h----hHHHhCCCCCeEEEEeCchhhHH
Confidence            47789999999999999999999999988543322 2    1111112221 1    12222225788899998543332


Q ss_pred             ------------HHHH---HH----Hh-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           92 ------------QRTD---FV----KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        92 ------------~R~~---~~----~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                                  ....   .+    .. ...|+.+..|||++|.++..+|+..|...+
T Consensus       115 ~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p  172 (500)
T 3czp_A          115 LYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP  172 (500)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence                        1111   11    12 456788899999999999999999997643

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.90  E-value=0.015  Score=59.85  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++.++.|+|++||||||+++.++..+
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999988653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.83  E-value=0.017  Score=58.14  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..+++++||+||||||+.+.+...+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            556799999999999999999987643

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.81  E-value=0.017  Score=64.29  Aligned_cols=36  Identities=28%  Similarity=0.586  Sum_probs=30.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D   54 (611)
                      ++..++|+||||+||||+++.++..++.++..++..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~  142 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG  142 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence            466899999999999999999999988777666543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.80  E-value=0.012  Score=57.76  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +...+++.||||+||||+|..+++.+.
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345689999999999999999998865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.80  E-value=0.012  Score=56.91  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ++..+++|+|+||||||||+..++..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45679999999999999999999874

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A

Probab=94.78  E-value=0.011  Score=60.41  Aligned_cols=42  Identities=10%  Similarity=0.083  Sum_probs=38.9

Q ss_pred             hhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 007244          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (611)
Q Consensus       265 ~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~  306 (611)
                      ..+|.+|..+|.++|++||+|+|+||+|.+++|++..+.+.+
T Consensus       201 r~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~  242 (277)
T 3sig_A          201 AKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLD  242 (277)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhh
Confidence            457799999999999999999999999999999999998874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.73  E-value=0.017  Score=61.58  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=26.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      -+.+.+++|+|||||||||+++.++..++.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            456679999999999999999999987764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.68  E-value=0.016  Score=56.16  Aligned_cols=26  Identities=27%  Similarity=0.647  Sum_probs=22.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ++..+++|.|+||||||||+.+++..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34679999999999999999988653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.66  E-value=0.016  Score=58.53  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -.+..+++|+|+||||||||++.++..
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345679999999999999999998764

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=94.63  E-value=0.09  Score=54.13  Aligned_cols=101  Identities=16%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEeecchhccCCCCcHHHHHHHHHHHHHC------CCcEEEecCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS------ARPWARICQDTINKGKSGTKVQCLTSASSALKK------GKSVFLDRCN   87 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~------~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~------Gk~VIID~tn   87 (611)
                      +..++|.||||+||||+|+.+++..      ...+..++.+    +.....+++.+ +.+.+..      .+.+|||...
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~ir~-li~~~~~~p~~~~~kvviIdead   92 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIRT-IKDFLNYSPELYTRKYVIVHDCE   92 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHHH-HHHHHTSCCSSSSSEEEEETTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHHHH-HHHHHhhccccCCceEEEeccHH
Confidence            5688999999999999999998863      2234444432    11122222322 2233321      2457888744


Q ss_pred             -CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           88 -LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        88 -l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                       ++......+++. .+.+....+|++-...+.+..-+..|
T Consensus        93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR  132 (305)
T 2gno_A           93 RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR  132 (305)
T ss_dssp             GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred             HhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence             455555666666 66555555666544443444444445

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.54  E-value=0.016  Score=57.37  Aligned_cols=27  Identities=30%  Similarity=0.334  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+||+||||||+.+.+..-.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            456789999999999999999887643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.50  E-value=0.022  Score=60.31  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++.+|.|+|++||||||+++.|+..+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            3568999999999999999999988653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.49  E-value=0.019  Score=59.46  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=24.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++..++.|+||+|||||||++.|..-+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3556789999999999999999998765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.44  E-value=0.013  Score=55.52  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++.|+|++||||||+++.|...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4789999999999999999987643

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.43  E-value=0.028  Score=55.70  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=27.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ   53 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~   53 (611)
                      +.-|+|.|+||+|||++|+.+.....   .+++.++.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~   65 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC   65 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence            34578999999999999999988765   35766764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.39  E-value=0.25  Score=53.34  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=27.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEeec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~----~~~~~~~Is~   53 (611)
                      -.+..+++|.|+||+|||||+..++..    .+.+...++.
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            345679999999999999999998753    2334555654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.35  E-value=0.042  Score=57.58  Aligned_cols=38  Identities=29%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      .+++.+|+|+|.||+||||++.+|...+   +.....++.|
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            4567789999999999999999998664   3444555544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.31  E-value=0.049  Score=63.72  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .-++|+|+||+||||+++.++...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999876

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.30  E-value=0.025  Score=54.73  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .++.+++++|+||||||++|..+...
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999987544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.30  E-value=0.025  Score=53.86  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+++++|+|||||||++.+++..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999997776543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.021  Score=59.41  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=24.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...|..++|.||||+|||++++.+++++
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4567788999999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.28  E-value=0.027  Score=52.90  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....|+|+|++||||||+.+.+....
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34678999999999999999998753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.22  E-value=0.15  Score=52.18  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=24.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .++.+-.|.++|.||+|||||.+++...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4567789999999999999999999764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.18  E-value=0.18  Score=54.32  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~   53 (611)
                      .+..+++|.|+||+|||||+..++...    +.+...++.
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            456799999999999999999987532    345555654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.18  E-value=0.028  Score=61.20  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++|+|+||+|||++++.++...
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999885

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.17  E-value=0.063  Score=56.82  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      ...+++|.|+||+||||||..++...   +.....|+.+
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            45689999999999999999987643   3455566654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.17  E-value=0.018  Score=56.51  Aligned_cols=27  Identities=37%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+|++||||||+.+.++.-.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999987543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.17  E-value=0.022  Score=56.51  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..++.|+|++||||||+.+.++.-
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.14  E-value=0.14  Score=53.93  Aligned_cols=104  Identities=19%  Similarity=0.164  Sum_probs=54.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhcc---C--------CCC-cHHHHHHHHHHHHHCCCcE-E
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTINK---G--------KSG-TKVQCLTSASSALKKGKSV-F   82 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~~---~--------~~~-~~~~~~~~~~~~L~~Gk~V-I   82 (611)
                      +..+++++||+||||||+.+.+......   ..+..-.|.+.-   .        ... ....+...+.++|.....+ +
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil  201 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL  201 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence            4459999999999999999998765431   122222222210   0        000 0012335677788777654 5


Q ss_pred             EecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHH
Q 007244           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV  123 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~  123 (611)
                      +|- +...+....++++...|..+.++.=+.+......|+.
T Consensus       202 lDE-p~d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli  241 (356)
T 3jvv_A          202 VGE-MRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV  241 (356)
T ss_dssp             ESC-CCSHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred             cCC-CCCHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence            555 5566555555555222333322222344444556654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.11  E-value=0.027  Score=59.61  Aligned_cols=28  Identities=43%  Similarity=0.686  Sum_probs=23.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      ....|+|+|+|||||||+++.|++.++.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3456889999999999999999988763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.08  E-value=0.022  Score=57.28  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...+++|+|+||||||||+..++..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            35679999999999999999998763

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.07  E-value=0.094  Score=55.26  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      +..+++|.|+|||||||||.+++...   +.....|+.+
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            55799999999999999999987642   3345556653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.06  E-value=0.026  Score=56.06  Aligned_cols=27  Identities=26%  Similarity=0.366  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++.-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999987643

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.98  E-value=0.053  Score=53.27  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc--CCCeEEeecc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS--ARPWARICQD   54 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~--~~~~~~Is~D   54 (611)
                      ...++.+++++|.+|+||||++..++..+  +.....++.|
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            34557899999999999999999998654  3345566655

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.97  E-value=0.12  Score=52.33  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=28.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~   55 (611)
                      .+++|.|++|+||||+++++.+.....+..++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            38999999999999999999988765555565443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.93  E-value=0.029  Score=55.86  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++.|+|++||||||+.+.++.-..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999876543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.92  E-value=0.026  Score=54.08  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++.|+|++||||||+++.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999988754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.91  E-value=0.075  Score=61.20  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhccC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG   59 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~~   59 (611)
                      -++|.||||+|||++|+.+++.+   +.+++.++...+...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~  563 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK  563 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence            68999999999999999999876   456777876665443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.90  E-value=0.044  Score=56.90  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      ..++.+|+|+|++|+||||++..|+..+   +.....++.|..
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            3568899999999999999999987643   344555666653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.90  E-value=0.026  Score=56.87  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=23.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....++.|+|++||||||+.+.++.-..
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567899999999999999999876443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.86  E-value=0.037  Score=52.96  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=26.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..-|+|+|+||+||||+|..|.++ +  +..++.|..
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r-G--~~lvaDD~v   49 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR-G--HQLVCDDVI   49 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-C--CeEecCCEE
Confidence            346899999999999999999885 3  555666554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.75  E-value=0.024  Score=57.27  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++.-.
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            456789999999999999999987643

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.74  E-value=0.033  Score=53.94  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=26.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~----~~~~~~~Is~   53 (611)
                      ++..++++.|+||+|||+||.+++..    .+.....++.
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~   67 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL   67 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence            45679999999999999999987532    2344444554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.73  E-value=0.037  Score=58.56  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..+++++|++||||||+.+.+...+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456799999999999999999988654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.72  E-value=0.024  Score=57.73  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+||+||||||+.+.+..-.
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            345789999999999999999987644

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.71  E-value=0.034  Score=56.10  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....++.|+|++||||||+.+.++.-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.71  E-value=0.061  Score=56.09  Aligned_cols=27  Identities=33%  Similarity=0.381  Sum_probs=23.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -.+..++.|+|+|||||||+.+.+...
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999999999999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.70  E-value=0.029  Score=56.63  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+|++||||||+.+.++.-.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            456789999999999999999987644

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.70  E-value=0.025  Score=56.41  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+|++||||||+.+.++.-..
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3456899999999999999999876543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.69  E-value=0.03  Score=56.75  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+|++||||||+.+.++.-+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567899999999999999999876543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.69  E-value=0.03  Score=55.88  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..++.|+|++||||||+.+.++.-
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35568999999999999999998763

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.65  E-value=0.031  Score=56.25  Aligned_cols=27  Identities=33%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...++.|+|++||||||+.+.+..-+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            456789999999999999999987643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.63  E-value=0.027  Score=55.91  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....++.|+|++||||||+.+.++.-..
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3556899999999999999999876443

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=93.59  E-value=0.054  Score=54.11  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=25.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      .+|.|+|.+||||||+++.+.+.++  +.++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g--~~~~~   31 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC--CeEEe
Confidence            4799999999999999999988777  44444

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.57  E-value=0.027  Score=56.40  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....++.|+|++||||||+.+.++.-..
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3456899999999999999999876443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.56  E-value=0.032  Score=56.07  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....++.|+|++||||||+.+.++.-..
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567899999999999999999876443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.54  E-value=0.028  Score=55.35  Aligned_cols=27  Identities=22%  Similarity=0.452  Sum_probs=23.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +..++.|+|++||||||+.+.++.-..
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            456899999999999999999876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.50  E-value=0.048  Score=49.57  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+++|.+|+|||||.+++...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.47  E-value=0.034  Score=56.05  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=23.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+|++||||||+.+.++.-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            456789999999999999999987643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.43  E-value=0.048  Score=49.71  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ..|+|+|+||+||||+.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5689999999999999999975

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.41  E-value=0.052  Score=48.64  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+++|.+|+|||||.+++...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.41  E-value=0.025  Score=55.33  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=22.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...++.|+|++||||||+.+.++.-..
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456789999999999999999876443

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=93.40  E-value=0.068  Score=55.75  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=23.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...+++|.|+||||||||+..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.39  E-value=0.026  Score=54.92  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...++.|+|++||||||+.+.++..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.39  E-value=0.057  Score=48.98  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=22.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+++|.+|+|||||.+++...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999875

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=93.39  E-value=0.059  Score=59.45  Aligned_cols=107  Identities=10%  Similarity=0.038  Sum_probs=69.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEee----cchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHH-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC----QDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLERE-   91 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is----~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~-   91 (611)
                      +.+.||+|=|.-||||+|.+++|.+.++.. +.++.    .+.-...++. +    ......=..|..+|.|...+..- 
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~~yl-~----R~~~~lP~~G~i~IfDRswY~~~~  372 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQPYL-W----RFWRHIPARRQFTIFDRSWYGRVL  372 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTSCTT-H----HHHTTCCCTTCEEEEESCGGGGGT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcchHH-H----HHHHhCCCCCeEEEEeCcchhhHH
Confidence            578999999999999999999999988743 22222    1111112222 1    11111224788899999665542 


Q ss_pred             -----------HHH-HHHH------h-CCCCCeEEEEEEeCCHHHHHHHHHhccccc
Q 007244           92 -----------QRT-DFVK------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (611)
Q Consensus        92 -----------~R~-~~~~------l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~  129 (611)
                                 +.. .+..      . ...|..+..|||++|.++..+|+..|...+
T Consensus       373 v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p  429 (500)
T 3czp_A          373 VERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP  429 (500)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence                       111 1111      1 345778899999999999999999997644

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.38  E-value=0.052  Score=51.79  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....|+++|.+||||||++.++...+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999987753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.38  E-value=0.045  Score=63.05  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++|+|+||+|||++|+.+++.+
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999885

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.37  E-value=0.17  Score=54.81  Aligned_cols=36  Identities=14%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      .+..++++.|.||+|||||+..++...   +.+...++.
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl  233 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  233 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence            456799999999999999999987543   334555654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.35  E-value=0.04  Score=51.15  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +-+.+|+|++||||||+.+.+.-.++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            34899999999999999999977654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.31  E-value=0.11  Score=59.64  Aligned_cols=26  Identities=23%  Similarity=0.403  Sum_probs=22.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+.-++|+|+||+||||+++.++...
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            34457899999999999999998875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.28  E-value=0.046  Score=48.72  Aligned_cols=21  Identities=33%  Similarity=0.778  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+++|.+|+||||+.+++...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999865

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.26  E-value=0.044  Score=51.54  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+|+|++|+||||+.+.+...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.19  E-value=0.031  Score=52.75  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .....|+|+|++||||||+.+.+..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4557899999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.17  E-value=0.034  Score=55.62  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=22.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++.-.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345689999999999999999987644

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.15  E-value=0.028  Score=57.53  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++|.|+||+|||++|+.+.+.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999999876

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=93.15  E-value=0.057  Score=55.77  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...+++|.|+||||||||+.+++...
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            345799999999999999999998763

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.14  E-value=0.061  Score=47.74  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+++|.+|+||||+.+++...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34899999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.13  E-value=0.045  Score=57.41  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=24.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...++.|+|+||||||||+..++...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456899999999999999999998765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.11  E-value=0.063  Score=51.37  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...|+|+|.+|+||||++.++....
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45678888999999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.10  E-value=0.062  Score=47.86  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+++|.+|+|||||.+++...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.10  E-value=0.055  Score=51.38  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .....-|+|+|++|+||||+.+++....
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445678999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.09  E-value=0.036  Score=56.45  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=23.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+|++||||||+.+.++.-..
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3556899999999999999999876543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.08  E-value=0.048  Score=57.70  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            456789999999999999999987644

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.06  E-value=0.036  Score=55.54  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++.-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999987654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.04  E-value=0.058  Score=56.52  Aligned_cols=26  Identities=38%  Similarity=0.438  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...+|.|+|+|||||||+.+.+...
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.00  E-value=0.068  Score=49.19  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ++.-|+|+|++|+||||+.+++...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999863

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.98  E-value=0.048  Score=55.17  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+.|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=92.96  E-value=0.064  Score=48.74  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .++.-|+|+|.+|+||||+.+++...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45567899999999999999999753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.93  E-value=0.067  Score=49.05  Aligned_cols=26  Identities=19%  Similarity=0.228  Sum_probs=22.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.93  E-value=0.056  Score=48.42  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+++|.+|+|||||.+++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.93  E-value=0.058  Score=56.53  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...+.|+|++||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            56789999999999999999998766

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.93  E-value=0.063  Score=57.89  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhccC-------CCCcH--HHHHHHHHHHHHCCCcEEEec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINKG-------KSGTK--VQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~D~i~~~-------~~~~~--~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      .+..+|+++||+||||||+.+.+......  ..+.+..|.+...       .....  ..+...++.+|+....+|+-+
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vg  243 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVG  243 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEES
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEc
Confidence            45679999999999999999999887652  1233334433210       00010  112356667777777776544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.89  E-value=0.056  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+++|.+|+|||||.+++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999999854

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.88  E-value=0.078  Score=48.81  Aligned_cols=26  Identities=15%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34566999999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.86  E-value=0.07  Score=48.92  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34567899999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.84  E-value=0.058  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..-|+++|.+|+|||||.+++....
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3568999999999999999998753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.82  E-value=0.25  Score=53.40  Aligned_cols=94  Identities=19%  Similarity=0.175  Sum_probs=47.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhc---------------cCCCC----cHHHHHHHHHHHHHCC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTIN---------------KGKSG----TKVQCLTSASSALKKG   78 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~---------------~~~~~----~~~~~~~~~~~~L~~G   78 (611)
                      ..|+|+|.||+||||+.+++......   ...-++.|...               .|...    ...+....+..++...
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a  103 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA  103 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence            46899999999999999998643110   00011111110               01100    1223334555555554


Q ss_pred             C--cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC
Q 007244           79 K--SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP  114 (611)
Q Consensus        79 k--~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p  114 (611)
                      .  .+|+|+..........+.++ +..+.++.++.=.++
T Consensus       104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D  142 (456)
T 4dcu_A          104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD  142 (456)
T ss_dssp             SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred             CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence            4  36778765333334455555 666666655554444

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=92.77  E-value=0.056  Score=57.63  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=23.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....++.|+||+||||||+.+.++.-..
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            4567899999999999999999986443

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.76  E-value=0.059  Score=48.89  Aligned_cols=24  Identities=29%  Similarity=0.513  Sum_probs=21.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+++|.+|+|||||.+++...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.75  E-value=0.06  Score=55.37  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=50.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhcc---CCCCcHHHHHHHHHHHHHCCCcEEEecCCCCH--
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINK---GKSGTKVQCLTSASSALKKGKSVFLDRCNLER--   90 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~----~~~~~Is~D~i~~---~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~--   90 (611)
                      +.-++|.|+||+|||++|..++..+.    ..+..++...+..   ..+... . .......+.....+|||......  
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~-~-~~~~~~~~~~~~lLiiDdig~~~~~  229 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNG-S-VKEEIDAVKNVPVLILDDIGAEQAT  229 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC------CCTTHHHHTSSEEEEETCCC----
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccc-h-HHHHHHHhcCCCEEEEcCCCCCCCC
Confidence            46789999999999999999886543    3444454332211   000000 0 01122344555678899853322  


Q ss_pred             -HHHHHHHH-h--CC-CCCeEEEEEEeCCHHHHHHHH
Q 007244           91 -EQRTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRS  122 (611)
Q Consensus        91 -~~R~~~~~-l--~~-~~~~v~vV~Ld~p~e~~~~Rl  122 (611)
                       ..+..++. +  .. .....+++--..+.+.+...+
T Consensus       230 ~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~  266 (308)
T 2qgz_A          230 SWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW  266 (308)
T ss_dssp             --CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence             22221211 1  11 111124555567777766543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.74  E-value=0.068  Score=49.53  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....-|+|+|++|+||||+.+++....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            445678999999999999999998753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=92.74  E-value=0.057  Score=57.07  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            456789999999999999999987643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.73  E-value=0.1  Score=54.27  Aligned_cols=38  Identities=32%  Similarity=0.288  Sum_probs=27.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      .....+|.++|+||+||||+++.|...+   +.....++.|
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            3566788999999999999999987543   3334444443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.73  E-value=0.075  Score=47.33  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +.-|+++|.+|+|||||.+++...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.67  E-value=0.069  Score=49.21  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +.-|+|+|.||+||||+.+++...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.65  E-value=0.057  Score=48.48  Aligned_cols=20  Identities=40%  Similarity=0.680  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~   41 (611)
                      -|+|+|.||+|||||.+++.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            38999999999999999985

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=92.64  E-value=0.06  Score=56.99  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=23.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            456789999999999999999987644

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.63  E-value=0.061  Score=48.43  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~   42 (611)
                      -|+++|.+|+||||+.+++..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999999863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.60  E-value=0.041  Score=56.90  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++..++.|+|++||||||+.+.+..-+.
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            4567899999999999999999876543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.58  E-value=0.057  Score=50.13  Aligned_cols=21  Identities=38%  Similarity=0.782  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~   42 (611)
                      -|+|+|+||+|||||.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.58  E-value=0.062  Score=57.01  Aligned_cols=27  Identities=30%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.+..-.
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            456789999999999999999887643

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=92.58  E-value=0.076  Score=52.38  Aligned_cols=28  Identities=14%  Similarity=0.039  Sum_probs=22.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+..+++++|+||+||||.+..++.++
T Consensus         9 ~~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A            9 KKIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3456899999999999999998887665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.57  E-value=0.07  Score=48.39  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ....-|+|+|.+|+|||||.+++..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3445689999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.57  E-value=0.091  Score=47.23  Aligned_cols=26  Identities=19%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .++.-|+++|.+|+|||||.+++...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.56  E-value=0.067  Score=47.87  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +.-|+++|.+|+|||||.+++...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999863

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.54  E-value=0.081  Score=48.98  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+++|.+|+|||||.+++...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567899999999999999999754

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=92.54  E-value=0.079  Score=53.80  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=23.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++..-|+|.||||+|||++|..++..++
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4445699999999999999999998653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.52  E-value=0.056  Score=55.39  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+|++||||||+.+.++.-.
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            456789999999999999999987643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.51  E-value=0.079  Score=49.58  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=22.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            44567999999999999999999865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=92.50  E-value=0.064  Score=56.98  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            456789999999999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.48  E-value=0.082  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      +.-|+|+|.||+|||||.+++..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            45689999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.47  E-value=0.085  Score=47.12  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+++|.+|+|||||.+++...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.43  E-value=0.08  Score=48.45  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ++.-|+++|.+|+|||||.+++...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.41  E-value=0.081  Score=47.40  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .-|+++|.+|+||||+.+++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.41  E-value=0.085  Score=48.93  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            344567899999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=92.39  E-value=0.058  Score=56.94  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            345789999999999999999987643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.39  E-value=0.093  Score=47.62  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=21.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +..-|+|+|.+|+|||||.+++...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4556899999999999999998753

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=92.38  E-value=0.069  Score=55.00  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -.+..+++|.|.||+|||||+..++..
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.38  E-value=0.087  Score=47.63  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34567899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.34  E-value=0.085  Score=47.39  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+++|.+|+|||||.+++...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=92.33  E-value=0.054  Score=57.02  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            455789999999999999999987643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.33  E-value=0.073  Score=49.06  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=21.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...+..-|+|+|.+|+|||||.+++...
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3445567999999999999999999754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.30  E-value=0.092  Score=47.74  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence            344567899999999999999999764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.23  E-value=0.082  Score=47.28  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+||||+.+++...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            799999999999999999764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=92.23  E-value=0.072  Score=56.94  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ....++.|+||+||||||+.+.++.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhC
Confidence            4567899999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.22  E-value=0.06  Score=54.32  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++.|+|++||||||+.+.++.-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999987654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=92.21  E-value=0.074  Score=54.46  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=26.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEee
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARIC   52 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is   52 (611)
                      +.-|+|.|+||+|||++|+.+.....   .+++.++
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            44588999999999999999988653   4565665

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=92.19  E-value=0.067  Score=56.17  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      +..+++|.|+||||||||+.+++...   +.....++.+
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            56799999999999999999987542   3344455543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.18  E-value=0.089  Score=48.57  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=21.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +.-|+++|.+|+|||||++++...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            457899999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=92.17  E-value=0.064  Score=56.94  Aligned_cols=27  Identities=22%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            355689999999999999999987643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.17  E-value=0.11  Score=47.64  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..-|+|+|.+|+|||||.+++...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.17  E-value=0.068  Score=55.12  Aligned_cols=24  Identities=25%  Similarity=0.606  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+++|+|++||||||+.+.+....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            478999999999999999998653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.16  E-value=0.091  Score=47.81  Aligned_cols=26  Identities=19%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+.-|+|+|.+|+|||||.+++...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            34466899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.14  E-value=0.079  Score=47.92  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +.-|+++|.+|+|||||.+++...
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999853

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=92.14  E-value=0.12  Score=59.50  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .-++|.||||+|||++|+.+++.++.+++.++...+
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~  524 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence            368999999999999999999998877777775444

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.98  E-value=0.078  Score=48.69  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+++|.+|+|||||.+++...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.91  E-value=0.1  Score=48.25  Aligned_cols=26  Identities=15%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..-|+|+|.+|+|||||.+++...
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            34467999999999999999999764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=91.91  E-value=0.12  Score=49.64  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=23.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..+++++|++||||||.+..++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345799999999999999998887765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=91.90  E-value=0.36  Score=49.31  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...|+|+|.||+|||||.+++...
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999999999854

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.90  E-value=0.068  Score=57.28  Aligned_cols=25  Identities=20%  Similarity=0.322  Sum_probs=21.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ....++.|+|+||||||||+..++-
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Confidence            3457999999999999999998764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.89  E-value=0.081  Score=54.25  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...+++|.|+|||||||||.+++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34689999999999999999999865

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.88  E-value=0.13  Score=52.12  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=26.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      .+++|.|++|+||||+++++.+..+  +..++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence            5899999999999999999998875  555553

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.87  E-value=0.11  Score=48.07  Aligned_cols=26  Identities=15%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34556899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.87  E-value=0.11  Score=47.83  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+|+|.+|+||||+.+++...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999999765

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=91.84  E-value=0.12  Score=55.83  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i   56 (611)
                      ++.+|+++|++||||||++..|+..+   +.....++.|..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            67899999999999999999988654   334555666654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.84  E-value=0.095  Score=48.56  Aligned_cols=28  Identities=29%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .....+.-|+|+|.+|+|||||.+++..
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3455567899999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=91.81  E-value=0.055  Score=57.03  Aligned_cols=27  Identities=22%  Similarity=0.291  Sum_probs=23.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....++.|+||+||||||+.+.++.-.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            456789999999999999999987643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.78  E-value=0.086  Score=54.02  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=22.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..++.|+|++||||||+.+.|. ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            4689999999999999999998 543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.76  E-value=0.083  Score=48.28  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=21.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .++.-|+++|++|+||||+.+++..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999998863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.76  E-value=0.093  Score=47.87  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+++|.+|+|||||.+++...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.75  E-value=0.11  Score=48.10  Aligned_cols=26  Identities=15%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+||||+.+++...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45677999999999999999998754

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=91.70  E-value=0.48  Score=45.81  Aligned_cols=101  Identities=18%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             ccccCCCcEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeec--chhccCCCCcHHHH---------HHHHHHHHHCC
Q 007244           13 DEEKKWKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ--DTINKGKSGTKVQC---------LTSASSALKKG   78 (611)
Q Consensus        13 ~~~~~~~p~LIvLvG~PGSGKST~A~~L~~~---~~~~~~~Is~--D~i~~~~~~~~~~~---------~~~~~~~L~~G   78 (611)
                      ......+..|.++.|++||||||..-+....   -+.....+..  |.-......++...         ...+......-
T Consensus        13 ~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~   92 (195)
T 1w4r_A           13 PRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGV   92 (195)
T ss_dssp             ------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTC
T ss_pred             ccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCC
Confidence            3345677889999999999999644443332   2233434432  21111112222110         01122223344


Q ss_pred             CcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCC
Q 007244           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP  114 (611)
Q Consensus        79 k~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p  114 (611)
                      ..++||..-+-++ ...+++. ...+.++++.-|+.+
T Consensus        93 DvIlIDEaQFfk~-~ve~~~~L~~~gk~VI~~GL~~D  128 (195)
T 1w4r_A           93 AVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGT  128 (195)
T ss_dssp             SEEEESSGGGCTT-HHHHHHHHHHTTCEEEEEEESBC
T ss_pred             CEEEEEchhhhHH-HHHHHHHHHHCCCeEEEEecccc
Confidence            5678887555433 4444444 556777777778776

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.68  E-value=0.13  Score=47.74  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+|||||.+++...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            4456899999999999999999863

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.67  E-value=0.12  Score=47.13  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+|+|.+|+|||||.+++...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            456899999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.59  E-value=0.097  Score=47.82  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +..-|+|+|.+|+|||||.+++...
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3557899999999999999999853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.56  E-value=0.12  Score=47.97  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence            334567899999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.55  E-value=0.13  Score=47.89  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+|+|.+|+|||||.+++...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.54  E-value=0.053  Score=56.44  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeec-chhccCCCC--------cHHHHHHHHHHHHHCCC-cEEEecCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-DTINKGKSG--------TKVQCLTSASSALKKGK-SVFLDRCN   87 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~--~~~~Is~-D~i~~~~~~--------~~~~~~~~~~~~L~~Gk-~VIID~tn   87 (611)
                      ..+++++|++||||||+.+.+......  ..+.++. +.+.-....        .-......+.++|.... .+|+|-. 
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~-  249 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL-  249 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC-
Confidence            458999999999999999999876542  2333331 221100000        00112244555666554 4667663 


Q ss_pred             CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHh
Q 007244           88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus        88 l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ...+...-+..+...+.-+.++.=..+......|+..-..... .....+.+.++++..
T Consensus       250 ~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~-~~~~~~~~~i~~~i~  307 (330)
T 2pt7_A          250 RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS-AARNIKFESLIEGFK  307 (330)
T ss_dssp             CSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG-GGTTSCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc-ccCCCCHHHHHHHHH
Confidence            2333333222233222212222224456666677643222100 001456666666655

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.51  E-value=0.14  Score=47.73  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+..-|+|+|.+|+|||||.+++...
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            344567999999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.50  E-value=0.1  Score=47.98  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=21.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...-|+|+|.+|+|||||.+.+...+.
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            345689999999999999987766543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.48  E-value=0.091  Score=55.54  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+++|+|+||+||||+.+.|...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhcc
Confidence            458999999999999999999854

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.48  E-value=0.12  Score=48.22  Aligned_cols=27  Identities=22%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcC
Confidence            344567999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.46  E-value=0.13  Score=47.56  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+|||||.+++...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.46  E-value=0.12  Score=49.19  Aligned_cols=27  Identities=15%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            345567999999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.42  E-value=0.094  Score=49.40  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~   41 (611)
                      ....-|+|+|.+|+|||||.+++.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999999985

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.42  E-value=0.13  Score=48.03  Aligned_cols=26  Identities=19%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44567999999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=91.39  E-value=0.12  Score=52.82  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecch
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~   55 (611)
                      ++.+|.++|++|+||||++..++..+   +.....++.|.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~  136 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence            67889999999999999999987543   33444556554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.39  E-value=0.11  Score=48.24  Aligned_cols=26  Identities=15%  Similarity=0.347  Sum_probs=22.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...-|+|+|.+|+|||||.+++....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            34568999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.32  E-value=0.11  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+|+|.+|+|||||.+++...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467899999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.32  E-value=0.14  Score=47.48  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=22.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            344456899999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.30  E-value=0.14  Score=47.35  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+|||||.+++...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3467899999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.29  E-value=0.13  Score=47.50  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..-|+|+|.+|+||||+.+++...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45677999999999999999999853

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.28  E-value=0.13  Score=47.14  Aligned_cols=24  Identities=25%  Similarity=0.566  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +.+.+++|+.||||||+..++.-.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.28  E-value=0.097  Score=48.50  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...+..-|+|+|.+|+|||||.+++....
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            34455679999999999999999987543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.26  E-value=0.09  Score=56.86  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             CCcEE--EEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQIL--VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~L--IvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+.+  +.|+|++|||||||.+.|+..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34556  999999999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.21  E-value=0.11  Score=48.73  Aligned_cols=25  Identities=16%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +..-|+|+|.+|+|||||.+++...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3456899999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.19  E-value=0.12  Score=47.13  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +..-|+++|.+|+||||+.+++...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.18  E-value=0.1  Score=53.41  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..++.|+|+|||||||+.+.+....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccc
Confidence            4688999999999999999997644

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.13  E-value=0.083  Score=48.38  Aligned_cols=25  Identities=16%  Similarity=0.317  Sum_probs=10.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+|||||.+++...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999998743

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.12  E-value=0.13  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+||||+.+.+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4467899999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.11  E-value=0.11  Score=48.58  Aligned_cols=24  Identities=17%  Similarity=0.402  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|+|+|.+|+|||||.+++...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999999754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=91.10  E-value=0.086  Score=55.68  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=22.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..=|+|.|.+|||||||++++.--+.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4456789999999999999999854444

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.02  E-value=0.12  Score=48.18  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .++.-|+++|.+|+||||+.+++...
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34457899999999999999999863

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.99  E-value=0.14  Score=47.14  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..-|+++|.+|+||||+.+++...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45667999999999999999998753

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=90.93  E-value=0.1  Score=54.44  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             CcEEEEE--EcCCCCcHHHHHHHHHHHc
Q 007244           19 KQILVIM--VGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        19 ~p~LIvL--vG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++|  .|+||+||||+++.+++..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4667888  9999999999999998765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.93  E-value=0.15  Score=47.82  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+|||||.+++...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=90.92  E-value=0.079  Score=58.41  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      -|+|.|+||+|||++|+.++...+
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            488999999999999999998774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.89  E-value=0.15  Score=47.77  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .....-|+|+|.+|+|||||.+++...
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            344577999999999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.86  E-value=0.098  Score=57.68  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=0.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~   41 (611)
                      ++..++.|+|++|||||||++.++
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.84  E-value=0.16  Score=47.30  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            34567999999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.81  E-value=0.14  Score=47.74  Aligned_cols=24  Identities=29%  Similarity=0.585  Sum_probs=20.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ...-|+|+|.+|+|||||.+++..
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            345689999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.74  E-value=0.15  Score=47.28  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+..-|+|+|.+|+|||||.+++...
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            344567999999999999999999874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.73  E-value=0.089  Score=58.15  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++++|++||||||+.+.+.....
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345699999999999999999987654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=90.71  E-value=0.14  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +..-|+|+|.+|+||||+.+++...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456899999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.67  E-value=0.14  Score=48.16  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....-|+|+|.+|+|||||.+++...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=90.66  E-value=0.11  Score=56.56  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...++.|+|++||||||+++.|+.-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4568999999999999999998763

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=90.61  E-value=0.15  Score=50.19  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=21.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+.-|+|+|.+|+||||+.+++...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999854

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.58  E-value=0.14  Score=48.71  Aligned_cols=25  Identities=16%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...-|+|+|.+|+|||||.+++...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3457899999999999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=90.57  E-value=0.67  Score=49.66  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .|+|+|.||+||||+.+++...
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=90.57  E-value=0.15  Score=46.47  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +..-|+|+|.+|+|||||.+++...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.53  E-value=0.15  Score=48.04  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=20.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .++.-|+|+|++|+||||+.+++..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3445689999999999999999863

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.48  E-value=0.17  Score=47.23  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .+..-|+++|.+|+|||||.+++..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4456799999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.40  E-value=0.15  Score=54.89  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=21.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .+.++.|+|++||||||+.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            445899999999999999999986

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.24  E-value=0.15  Score=48.10  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+.-|+|+|.+|+|||||.+++...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3456899999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.18  E-value=0.18  Score=47.45  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ....-|+|+|.+|+|||||.+++..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            4456789999999999999999874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.16  E-value=0.13  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .-|+|+|++|+|||||.+.|+.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4469999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=90.15  E-value=0.15  Score=56.66  Aligned_cols=29  Identities=17%  Similarity=0.245  Sum_probs=25.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ...+..++.|+|++||||||+.+.++..+
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            55677899999999999999999987643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.13  E-value=0.14  Score=57.53  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=22.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..++|+|+||+||||+++.++..++
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4789999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	611
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	7e-17
d1vhua_	192	c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo	2e-09
d2acfa1	168	c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA	6e-09
d1njra_	264	c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker'	1e-08
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	7e-07
d1yd9a1	188	c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt	1e-06
d1spva_	172	c.50.1.2 (A:) Hypothetical protein YmbD {Escherich	3e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	5e-04
d2fg1a1	154	c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba	0.002

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.4 bits (187), Expect = 7e-17
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  +   +  +  + +DT+         +C++S  +AL++GK V
Sbjct: 16  VVVAVGFPGAGKSTFIQEHLV--SAGYVHVNRDTLGS-----WQRCVSSCQAALRQGKRV 68

Query: 82  FLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140
            +D  N +   R  +++      V           +     +  R E         +  V
Sbjct: 69  VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR-EMTDPSHAPVSDMV 127

Query: 141 VNRMLQKKELPKLSEGFSRITLC 163
           +    ++ E P L+EGF  I   
Sbjct: 128 MFSYRKQFEPPTLAEGFLEILEI 150

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 337 QKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA 396
           +  +         GDIT+           I NAAN RL+  GGGV  AI  A      + 
Sbjct: 6   EAKVGDITLKLAQGDITQY------PAKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLY 58

Query: 397 TAERAKSLY---------PGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG 447
           T    K++           G  V+ P  +        G+ +V H +GP  +      L  
Sbjct: 59  TEISKKAMREQFGRDYIDHGEVVVTPAMNLEER----GIKYVFHTVGPICSGMWSEEL-- 112

Query: 448 DYVKGCEILRKAYTSLFE 465
                 E L KA+    E
Sbjct: 113 -----KEKLYKAFLGPLE 125

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

 Score = 53.1 bits (127), Expect = 6e-09
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
            DI +          VI NAAN  LK  GGGV  A+  A   A++  + +  K   P   
Sbjct: 20  VDIVKEAQSAN--PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 76

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILR 457
               L S   L         +HV+GPN+N      L     +      
Sbjct: 77  GGSCLLSGHNLA-----KKCLHVVGPNLNAGEDIQLLKAAYENFNSQD 119

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%)

Query: 315 RLVLVDLTQG------SKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIAN 368
           R++L D  +         I            I+     + +  + +           I +
Sbjct: 3   RIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVS 62

Query: 369 AANWRLKPGGGGVNAAIFSAAGPAL---EVATAERAKSLYPGNSVIVP---LPSTSPLCG 422
             N      GGG + A+++  G              +    G++ +V          +  
Sbjct: 63  PGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIEC 121

Query: 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSL 463
           R+G+ ++IHV                   G E +  A  + 
Sbjct: 122 RDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNA 162

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 25/147 (17%)

Query: 22  LVIMVGAPGSGKSTFCEHV------------------MRSSARPWARICQDTINKGKSGT 63
           +++ +G PGSGKST+                      + +                 +G 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 64  KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRS 122
           +     S        K V +   NL  E+R  +          V   V D+P    + R+
Sbjct: 64  QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123

Query: 123 VKRIEHEGNLQGGKAAAVVNRMLQKKE 149
            KR              V+  M +   
Sbjct: 124 SKRGTKAVP------IDVLRSMYKSMR 144

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 21/123 (17%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           +K      DI  +        + + +  N      GG V + +    G     A  E  K
Sbjct: 14  QKLQVVQADIASI------DSDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRK 66

Query: 403 SLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
              P       + +   L        VIH   P     +            E+L K   +
Sbjct: 67  KNGPLEVAGAAVSAGHGL----PAKFVIHCNSPVWGSDKC----------EELLEKTVKN 112

Query: 463 LFE 465
              
Sbjct: 113 CLA 115

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A  +  +      +
Sbjct: 8   GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 60

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFE 465
                     L G      V+H +GP       N          ++L+ AY +   
Sbjct: 61  GHA----VITLAGDLPAKAVVHTVGPVWRGGEQNE--------DQLLQDAYLNSLR 104

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62
          ++I+ G   +GKS     +      PW     D++ +    
Sbjct: 5  MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 16/124 (12%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------- 65
           ++++ G PGSGKST  E +      P      D +       ++                
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65

Query: 66  QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125
                A    K+G  V LD                     V         + C+ R    
Sbjct: 66  IAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS 125

Query: 126 IEHE 129
           +   
Sbjct: 126 LSDP 129

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 18/119 (15%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GD T     G     VI +  N      G G   A+        E               
Sbjct: 7   GDATAPIGSG---VKVITHICNDIGG-WGKGFVLALSKKWKMPEEAYRQWYKSQEEFTLG 62

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL 468
            +  +   + L       +V +++G +   +              I   A     +   
Sbjct: 63  AVQFVNVENKL-------YVANMIGQHGIYKDSK-------GLPPIRYDAVRQCLKEVA 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	611
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.9
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	99.89
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.89
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	99.88
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	99.83
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	99.66
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.66
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.59
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.45
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.38
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	99.37
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.3
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.29
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.25
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.18
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.17
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.17
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.15
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.15
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.1
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.09
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.02
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.01
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.99
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.98
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.97
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.95
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.94
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.91
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.91
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.88
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	98.84
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.73
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	98.72
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.7
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.66
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.66
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	98.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.62
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.59
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.52
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.49
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.48
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.38
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.38
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.34
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.3
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	98.26
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.23
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	98.09
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.05
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.98
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.98
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.95
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.94
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.87
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.68
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.47
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.44
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.41
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.4
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.3
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.3
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.23
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.14
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.13
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.12
d1okkd2	207	GTPase domain of the signal recognition particle r	97.06
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.05
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.0
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.93
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.91
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.91
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.9
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.83
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.73
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.54
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.46
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.43
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.41
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.34
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.31
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	96.31
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.27
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.26
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.01
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.99
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.94
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.84
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.84
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.66
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.63
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.54
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	95.5
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.48
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.37
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.19
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.09
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.08
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.88
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.86
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.86
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.61
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.54
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.53
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.49
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.32
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.29
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.29
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.28
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.16
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.16
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.07
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.05
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.04
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.04
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.01
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.0
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.87
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.86
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.85
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.81
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.79
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.76
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.67
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.63
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.61
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.58
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.55
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.53
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.53
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.49
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.48
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.43
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.4
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.36
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.29
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.25
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.21
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.2
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.18
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.11
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.1
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.99
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.87
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.68
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.67
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.6
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.58
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.56
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.55
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.43
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.43
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.39
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.37
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.12
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.11
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.99
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.85
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.83
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.78
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	91.76
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.72
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.63
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.59
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.58
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.52
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.47
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.43
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.41
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.32
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.31
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.27
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.25
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.22
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.07
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.01
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.99
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.88
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.59
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.56
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.53
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.53
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	90.41
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.24
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.11
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.91
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.61
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.54
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.54
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.53
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.33
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.29
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.07
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.94
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.93
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.59
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.04
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.93
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	87.9
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	87.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.72
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	86.99
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	86.29
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	85.0
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	84.6
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.34
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.01
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	82.24
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.19
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	81.45
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	81.41
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	81.07
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	80.93

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.4e-24  Score=203.93  Aligned_cols=115  Identities=18%  Similarity=0.128  Sum_probs=102.9

Q ss_pred             hcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCC
Q 007244          339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLP  415 (611)
Q Consensus       339 ~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~  415 (611)
                      .+.+.+|.|++|||+++.      +||||||||..|. ++||+++||+++||++|++||+++   .+++.+|++++|+  
T Consensus        10 ~~~~~~i~i~~GDIt~~~------~DaIVn~an~~l~-~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~vT~--   80 (188)
T d1yd9a1          10 LFLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA--   80 (188)
T ss_dssp             CTTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE--
T ss_pred             cccCCEEEEEeCCcCcCC------CCEEEECCCccCC-CCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCeeecc--
Confidence            467889999999999998      9999999999999 899999999999999999999875   3678999999998  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCC
Q 007244          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKL  477 (611)
Q Consensus       416 ~~~~~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~  477 (611)
                          + +.|+|++|||+|||.|+..          ...++|++||++||+.|     .|||||+||-
T Consensus        81 ----~-~~L~~k~IiH~v~P~~~~~----------~~~~~L~~~~~~~L~~a~~~~~~SIafP~igt  132 (188)
T d1yd9a1          81 ----G-HGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIGS  132 (188)
T ss_dssp             ----C-TTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCSB
T ss_pred             ----c-CCCCceEEeeeccccCCCc----------chHHHHHHHHHHHHHHHHHcCCCeEEeccccC
Confidence                2 4488999999999999754          24689999999999986     4999999993

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.6e-23  Score=196.93  Aligned_cols=112  Identities=34%  Similarity=0.436  Sum_probs=99.8

Q ss_pred             EEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCCCC
Q 007244          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTSPL  420 (611)
Q Consensus       344 ~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~~~  420 (611)
                      +|.|++|||+++.      +||||||||..|. ++||+++||+++||++++++|+++   .+++++|++++|+       
T Consensus         2 kI~iv~GDI~~~~------~DaIVn~~n~~l~-~~~gv~~ai~~~~G~~~~~~~~~~~~~~g~~~~g~~~~T~-------   67 (172)
T d1spva_           2 RIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL-------   67 (172)
T ss_dssp             CEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC-------
T ss_pred             eEEEEeCccCcCC------CCEEEECCCcccc-CCCcHHHHHHHHcCCchHHHHHHHHHHhCCCCCCCEEEEE-------
Confidence            6899999999997      9999999999999 899999999999999999999886   3789999999998       


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCC
Q 007244          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKL  477 (611)
Q Consensus       421 ~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~  477 (611)
                      .+.|+|++|||+|+|.|+....        ...++|++||++||+.|     .|||||.||-
T Consensus        68 ~~~l~~k~IiH~v~P~~~~~~~--------~~~~~l~~~~~~~L~~a~~~~~~sIa~P~lgt  121 (172)
T d1spva_          68 AGDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAIST  121 (172)
T ss_dssp             CTTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTTS
T ss_pred             cCCCCCcEEEEeccccccCCch--------HHHHHHHHHHHHHHHHHHHcCCCEEEeccccC
Confidence            2458899999999999976432        34689999999999986     4999999993

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.3e-23  Score=194.34  Aligned_cols=141  Identities=23%  Similarity=0.345  Sum_probs=126.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~   95 (611)
                      ..+.|.||+|+|+|||||||||++++...+  +.+|+.|.+.     .+..+...++.+|..|.+||+|+||....+|..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~--~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~   82 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTLG-----SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR   82 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGT--CEEEEHHHHC-----SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--CEEEchHHHH-----HHHHHHHHHHHHHHCCCCceeeCcCCCHHHHHH
Confidence            467899999999999999999999998877  7889999875     566788999999999999999999999999999


Q ss_pred             HHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcC
Q 007244           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (611)
Q Consensus        96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~  164 (611)
                      |+++ +.+++.+.+|+|++|.++|++|+..|..+... ...+++.++.+|.+.|++|...|||+.|+.+.
T Consensus        83 ~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~-~~~v~~~~~~~~~~~fe~P~~~Egf~~i~~i~  151 (172)
T d1yj5a2          83 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPS-HAPVSDMVMFSYRKQFEPPTLAEGFLEILEIP  151 (172)
T ss_dssp             HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTT-CCCCCHHHHHHHHHHCCCCCGGGSCSCEEEEC
T ss_pred             HHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcc-cCccHHHHHHHHHHhCCCCCcccCCcEEEEEC
Confidence            9999 88999999999999999999999999765332 23588999999999999999999999998774

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=1.9e-23  Score=201.63  Aligned_cols=122  Identities=27%  Similarity=0.290  Sum_probs=100.5

Q ss_pred             hhhhcCCeEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHH--HHHHHh-------cCCCCC
Q 007244          336 AQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALE--VATAER-------AKSLYP  406 (611)
Q Consensus       336 ~~~~~~~~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~--~e~~~~-------~~~~~~  406 (611)
                      +++.+|+.+|+|++||||++.      +||||||||++|. ++||+++||++++|++++  .++...       .+++++
T Consensus         5 ~~~~~~~~~i~i~~GdIt~~~------~DaIVN~aN~~l~-~~gGv~~aI~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   77 (192)
T d1vhua_           5 FEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDH   77 (192)
T ss_dssp             EEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCT
T ss_pred             EEEEECCEEEEEEeccCCccc------CCEEEECcCcccC-CCCcHHHHHHHhhCchhHhHHHHHHHHHHHhhcCCCCCC
Confidence            567899999999999999997      9999999999999 899999999999997533  222221       256899


Q ss_pred             CCEEEecCCCCCCCCCC--CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccCC
Q 007244          407 GNSVIVPLPSTSPLCGR--EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEKL  477 (611)
Q Consensus       407 G~~v~T~l~~~~~~~~~--l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a-----~siafp~~~~  477 (611)
                      |++++|+      +++.  .+|+||||+|||.|+....       .+..+.|++||++||+.|     .|||||+||-
T Consensus        78 G~~~~T~------~~~L~~~~~k~ViH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lgt  142 (192)
T d1vhua_          78 GEVVVTP------AMNLEERGIKYVFHTVGPICSGMWS-------EELKEKLYKAFLGPLEKAEEMGVESIAFPAVSA  142 (192)
T ss_dssp             TCCEEEE------CGGGGGGTCCEEEEEECCCCTTCCC-------HHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTS
T ss_pred             CcEEEEe------cccCCcccccEEEEEeeecccCCCc-------chhHHHHHHHHHHHHHHHHHcCCcEEEecCccC
Confidence            9999999      2221  2589999999999987632       356789999999999987     4999999993

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=99.83  E-value=1.4e-21  Score=184.82  Aligned_cols=114  Identities=25%  Similarity=0.309  Sum_probs=94.5

Q ss_pred             eEEEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCCC
Q 007244          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTSP  419 (611)
Q Consensus       343 ~~v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e~~~~---~~~~~~G~~v~T~l~~~~~  419 (611)
                      .+|.|+.||||++..  ...+||||||||++|. ++|||++||+++||++|+++|.++   .+++++|++++|+      
T Consensus        13 ~~v~i~~gDI~k~~~--~~~~D~IVN~aN~~l~-~~gGvs~AI~~~aG~~l~~e~~~~~~~~g~~~~G~~v~t~------   83 (168)
T d2acfa1          13 DNVAIKCVDIVKEAQ--SANPMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS------   83 (168)
T ss_dssp             SSEEEEESCHHHHHH--HHCCSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE------
T ss_pred             CcEEEEEcccceecc--cCCCCEEEECCCcccC-CCChHHHHHHHHhCHHHHHHHHHHHHhcCCCcCCCeEecc------
Confidence            469999999999820  0018999999999999 999999999999999999999886   3679999999998      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccCCC
Q 007244          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLS  478 (611)
Q Consensus       420 ~~~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a~siafp~~~~~  478 (611)
                      +++ + +++|||+|||+|....          ..++|..||++++ .+.|||||+||-+
T Consensus        84 g~~-l-~k~IiH~v~P~~~~~~----------~~~ll~~~~~~~~-~~~sIA~PaigtG  129 (168)
T d2acfa1          84 GHN-L-AKKCLHVVGPNLNAGE----------DIQLLKAAYENFN-SQDILLAPLLSAG  129 (168)
T ss_dssp             CTT-T-CSEEEEECCCCGGGTC----------CTTHHHHHHHGGG-GSSEEEECCTTCG
T ss_pred             CcC-c-chhheeecCCCccccc----------HHHHHHHHHHhhc-cCceEEecccccC
Confidence            233 4 5899999999997653          2468999999865 4679999999943

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=8.8e-17  Score=161.48  Aligned_cols=133  Identities=18%  Similarity=0.188  Sum_probs=97.8

Q ss_pred             CeEEEEEEcccceeccc-------CcccccEEEeCCCCCCcCCCChhhHHHHHhhcH-HHHHHHHHhc--CCCCCCCEEE
Q 007244          342 PKKFFTFVGDITRLYTG-------GGLCCNVIANAANWRLKPGGGGVNAAIFSAAGP-ALEVATAERA--KSLYPGNSVI  411 (611)
Q Consensus       342 ~~~v~i~~GDIt~~~~~-------~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~-~l~~e~~~~~--~~~~~G~~v~  411 (611)
                      ...+.|++|+|.++...       ....+||||||||+.+. +||||++||++++|+ .||+++++..  +.+++|++++
T Consensus        29 ~~~v~i~~g~i~~l~~~~~~~~~~~~~~~~AIVnpANS~g~-mgGGvd~AI~~a~Gg~~le~~~r~~i~~~~~pvG~a~i  107 (264)
T d1njra_          29 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATV  107 (264)
T ss_dssp             -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEE
T ss_pred             CCceEEEeCCHHHhhhhhccccccccCCCCEEEeCCCcCCC-CCccHHHHHHHhhCcHHHHHHHHHHHhhcCCCCCceEE
Confidence            45699999999776310       01237899999999999 999999999999765 5888888763  4588999988


Q ss_pred             ecC----CCCCCCCCCCCccEEEEe---cCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH----HHHhhccccCCCC
Q 007244          412 VPL----PSTSPLCGREGVTHVIHV---LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG----FLSIVRSQEKLSK  479 (611)
Q Consensus       412 T~l----~~~~~~~~~l~~k~ViH~---vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~----a~siafp~~~~~~  479 (611)
                      |+.    ..++.+ .+++|+||||+   |+|.|....++   +.+..+.+.|.+|++++|..    +.|||||+||-+.
T Consensus       108 v~~g~~~~~~~~~-~nl~~kyVIHaPTMv~P~~~~~~~~---~~~~~~~~~l~~a~~~~L~a~e~~i~SIAfPaigTGv  182 (264)
T d1njra_         108 VDLQRCLEEKTIE-CRDGIRYIIHVPTVVAPSAPIFNPQ---NPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGY  182 (264)
T ss_dssp             EEGGGGGCC-----CCTTEEEEEECCCBSCSSSCSCCTT---CHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCST
T ss_pred             eccCCcccccccc-ccCCCCEEEECcccccCCCCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCccccCC
Confidence            872    112222 36899999999   88988654332   22334668999999999964    4799999999443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.66  E-value=1.5e-16  Score=144.13  Aligned_cols=125  Identities=25%  Similarity=0.337  Sum_probs=98.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---------CCCcH-------HHHHHHHHHHHHCC---C
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGTK-------VQCLTSASSALKKG---K   79 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---------~~~~~-------~~~~~~~~~~L~~G---k   79 (611)
                      |+.||+|+|+|||||||+|++|.+... .+.+++.|+++..         .....       ......+...++.+   .
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVK   79 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCC
Confidence            578999999999999999999987654 3778888877421         01011       11234555566654   4


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccC
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~  150 (611)
                      .+|+|.+++....+..+..+ +..++.+.+|++++|.++|.+|+.+|+.+      .++++++++|++.++.
T Consensus        80 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~  145 (152)
T d1ly1a_          80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMRE  145 (152)
T ss_dssp             EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCC------CCCHHHHHHHHHHHHh
Confidence            69999999999999999999 88889999999999999999999999875      5788999999888643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.4e-15  Score=134.85  Aligned_cols=146  Identities=14%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---------CCCcH-------HHHHHHHHHHHHCCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGTK-------VQCLTSASSALKKGK   79 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---------~~~~~-------~~~~~~~~~~L~~Gk   79 (611)
                      ++.++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+...         .....       ......+...+..+.
T Consensus         2 ~~~~~~iivl~G~~GsGKsT~a~~La~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1knqa_           2 TNHDHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNK   79 (171)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccC
Confidence            567899999999999999999999999998  555777766421         11111       112345566677778


Q ss_pred             cEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccE
Q 007244           80 SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~  159 (611)
                      .++++...+....|..+   +..+..+.+|+|++|.+++.+|+.+|..+      ..+.+.+.++.+.++.|...|. +.
T Consensus        80 ~~~~~~~~~~~~~~~~~---~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~e~~~~~e~-~~  149 (171)
T d1knqa_          80 VSLIVCSALKKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET-DV  149 (171)
T ss_dssp             EEEEECCCCSHHHHHHH---HTTCTTEEEEEEECCHHHHHHHHHTSTTC------CCCHHHHHHHHHHCCCCCTTCT-TE
T ss_pred             ceEeeccchHHHHHHHH---HHhCCCceEEeecCCHHHHHHHHHhCcCC------CccHHHHHhhHHHhhCCCcccC-CE
Confidence            88888877777666655   44456678999999999999999999765      3567888889999988886664 43


Q ss_pred             EEEcCChhhHHHHHH
Q 007244          160 ITLCQNENDVQAALD  174 (611)
Q Consensus       160 V~vv~~~~evd~av~  174 (611)
                       ++++....+++++.
T Consensus       150 -~~id~~~~~e~v~~  163 (171)
T d1knqa_         150 -LVVDIDQPLEGVVA  163 (171)
T ss_dssp             -EEEECSSCHHHHHH
T ss_pred             -EEEeCCCCHHHHHH
Confidence             44444456666554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.50  E-value=1.4e-13  Score=129.96  Aligned_cols=156  Identities=19%  Similarity=0.342  Sum_probs=100.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~   76 (611)
                      +..+|.+|+|+|||||||||+|+.|++.++  +.+|+.+.+ +.                  +.+.........+...+.
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g--~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID   79 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhh
Confidence            467899999999999999999999999998  667886444 21                  122222222233333332


Q ss_pred             --CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhcc--CC
Q 007244           77 --KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LP  151 (611)
Q Consensus        77 --~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e--~P  151 (611)
                        ..+.+|+|+.+.+..++..+..+ ........+|+|++|.+++.+|+.+|..... +..+.++.+.+|+.....  .|
T Consensus        80 ~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~-~~~d~~e~~~~Rl~~y~~~~~~  158 (194)
T d1qf9a_          80 ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG-RSDDNIESIKKRFNTFNVQTKL  158 (194)
T ss_dssp             TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC-CTTCSHHHHHHHHHHHHHTHHH
T ss_pred             hhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccc-cccccHHHHHHHHHHHHHHHHH
Confidence              23679999999999998888777 6666667899999999999999998876433 223445544444332211  12


Q ss_pred             C--ccCCccEEEEcCChhhHHHHHH
Q 007244          152 K--LSEGFSRITLCQNENDVQAALD  174 (611)
Q Consensus       152 ~--~~EgFd~V~vv~~~~evd~av~  174 (611)
                      .  .++..+.+++++....++++..
T Consensus       159 ~~~~y~~~~~~~~Id~~~~ieeV~~  183 (194)
T d1qf9a_         159 VIDHYNKFDKVKIIPANRDVNEVYN  183 (194)
T ss_dssp             HHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred             HHHHHHhCCCEEEEECCCCHHHHHH
Confidence            1  1223344555554444554443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.45  E-value=3.9e-13  Score=122.16  Aligned_cols=109  Identities=22%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCC----C----------cHHHHHHHHHHHHHCCCcEEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----G----------TKVQCLTSASSALKKGKSVFLD   84 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~----~----------~~~~~~~~~~~~L~~Gk~VIID   84 (611)
                      |..+|+|+|+|||||||+|++|++.++.. .+++.|.++....    .          ....+...+...+..+..+|+|
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid   79 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLD   79 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCC-EEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            56899999999999999999999998743 3567777753211    0          1112336667788999999999


Q ss_pred             cCCCCHHHHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           85 RCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        85 ~tnl~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .+......+..+..+  ...+..+.++++++|.+++.+|+.+|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~  125 (176)
T d2bdta1          80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (176)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             cccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCc
Confidence            987776666554444  44566778899999999999999999763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.38  E-value=7.2e-13  Score=121.45  Aligned_cols=125  Identities=22%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCC--------CCcH--------HHHHHHHHHHHHCCCcEE
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------SGTK--------VQCLTSASSALKKGKSVF   82 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~--------~~~~--------~~~~~~~~~~L~~Gk~VI   82 (611)
                      .+.+|+|+|+|||||||+|+.|++.++.++++++.|.++...        ....        ......+...+..+..+|
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVI   82 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            367999999999999999999999999888889888775321        1111        112255666778889999


Q ss_pred             EecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCC
Q 007244           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~  152 (611)
                      +|+.. ....+..+   ...+..+.++++.++.+++.+|+.+|....     ....+.+..+...+..+.
T Consensus        83 ~~~~~-~~~~~~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~-----~~~~~~~~~~~~~~~~~~  143 (176)
T d1zp6a1          83 LDGVV-RPDWLPAF---TALARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFADLG  143 (176)
T ss_dssp             ECSCC-CTTTTHHH---HTTCSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTCCG
T ss_pred             ecccc-cHHHHHHH---HhcccccccccCCCCHHHHHHHHHhCCCcc-----ccchhhHHHHHHHHhhcc
Confidence            99854 44444444   334455778999999999999999997642     234666777777765443

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.37  E-value=6e-13  Score=122.29  Aligned_cols=117  Identities=15%  Similarity=0.046  Sum_probs=84.8

Q ss_pred             EEEEEcccceecccCcccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHH---HHHhcCCCCCCCEEEecCCCCCCCC
Q 007244          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYPGNSVIVPLPSTSPLC  421 (611)
Q Consensus       345 v~i~~GDIt~~~~~~~~~~daIVN~aN~~L~~~ggGVa~aI~~aAG~~l~~e---~~~~~~~~~~G~~v~T~l~~~~~~~  421 (611)
                      |..++|||++..   ...+|+|||++|..+. +||||++||.+++|..+++.   |++. +.+++|++++|+..      
T Consensus         2 i~~v~GDi~~~~---~~~~~~Ivh~~N~~~~-mG~GiA~ai~~~~p~~~~~~~~~~~~~-~~~~~G~~~~~~~~------   70 (154)
T d2fg1a1           2 ILYIKGDATAPI---GSGVKVITHICNDIGG-WGKGFVLALSKKWKMPEEAYRQWYKSQ-EEFTLGAVQFVNVE------   70 (154)
T ss_dssp             CEEEESCTTSCC---SSSCEEEEEEEETTCC-CCSTHHHHHHHHCSHHHHHHHHHHHHT-SSCSTTCEEEEEEE------
T ss_pred             eEEEeCccCCcC---CCCCCEEEEccCCCCc-ccchHHHHHHHHcCcHHHHHHHHhhhc-cCCCCCcEEEEECC------
Confidence            678999999863   1247999999999999 99999999999988654433   3332 67899999999821      


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccCCC
Q 007244          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEKLS  478 (611)
Q Consensus       422 ~~l~~k~ViH~vgP~~~~~~~~~~~~~~~~~~~~L~~ay~~~L~~a----~siafp~~~~~  478 (611)
                         ++.+|+|.++|.+.....+   .......+.|++|+++++..+    .|||||+||-+
T Consensus        71 ---~~~~I~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~~~sIa~P~Ig~G  125 (154)
T d2fg1a1          71 ---NKLYVANMIGQHGIYKDSK---GLPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCG  125 (154)
T ss_dssp             ---TTEEEEEEEEESSSSCCTT---CCCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCS
T ss_pred             ---CceEEEEEEeEeCCCCCcC---CccHHHHHHHHHHHHHHHHHHHhcCcEEEeCcccCC
Confidence               2379999999876443221   011123467888887766543    48999999943

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=9.1e-13  Score=127.27  Aligned_cols=142  Identities=15%  Similarity=0.174  Sum_probs=99.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC-CeE-Eee---c-----------------chh----ccCCCCcHHHH------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSAR-PWA-RIC---Q-----------------DTI----NKGKSGTKVQC------   67 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~-~~~-~Is---~-----------------D~i----~~~~~~~~~~~------   67 (611)
                      ..||+|+|||||||||+.+.|.+.++. .+. .++   +                 +.+    ..+.+.++..+      
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            568999999999999999999998752 221 221   1                 111    12222222111      


Q ss_pred             --HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           68 --LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        68 --~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                        ...+...+..|+.+|+|.      .++.+..+ ...+..+.+++++++.+++.+|+.+|+.       +..+.+..|+
T Consensus        82 t~~~~v~~~~~~g~~~ildi------d~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~-------~~~~~i~~Rl  148 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDI------DWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAKRM  148 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHHHH
T ss_pred             cccchHHHHHhcCCceeecC------cHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCC-------chHHHHHHHH
Confidence              166788899999999999      67777777 5555566777889999999999999977       4566677777


Q ss_pred             HhhccCCCccCCccEEEEcCChhhHHHHHHHhc
Q 007244          145 LQKKELPKLSEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      ..+..+......||.|++++   +++.+...+.
T Consensus       149 ~~a~~E~~~~~~fD~vIvNd---dl~~a~~el~  178 (205)
T d1s96a_         149 AQAVAEMSHYAEYDYLIVND---DFDTALTDLK  178 (205)
T ss_dssp             HHHHHHHTTGGGSSEEEECS---SHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEECc---CHHHHHHHHH
Confidence            77655555556699998874   4666666555

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.29  E-value=1.6e-11  Score=111.84  Aligned_cols=144  Identities=12%  Similarity=0.128  Sum_probs=91.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-----------------C-CCCc---HHH----HHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----------------G-KSGT---KVQ----CLTSASSA   74 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-----------------~-~~~~---~~~----~~~~~~~~   74 (611)
                      ..+|+|+|+|||||||+|+.|++.++.++.+++.|.+..                 + ....   ...    ....+...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999998887777665521                 0 0000   011    22445556


Q ss_pred             HHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCcc
Q 007244           75 LKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLS  154 (611)
Q Consensus        75 L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~  154 (611)
                      +..+..+|++.+................+..+..|+|++|.+++.+|+..|..+.       + .....+....+.+.  
T Consensus        83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-------~-~~~~~~~~~~~~~~--  152 (178)
T d1qhxa_          83 ARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRV-------A-GMAAKQAYVVHEGV--  152 (178)
T ss_dssp             HHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSC-------T-THHHHHTTGGGTTC--
T ss_pred             HhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcc-------h-hhhhhhhhhhhcCC--
Confidence            6778889999877666444333323122455678899999999999999997642       2 22334444443333  


Q ss_pred             CCccEEEEcCChhhHHHHHHH
Q 007244          155 EGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       155 EgFd~V~vv~~~~evd~av~~  175 (611)
                       .++ +++..+...++++...
T Consensus       153 -~~d-l~IDts~~s~ee~a~~  171 (178)
T d1qhxa_         153 -EYD-VEVDTTHKESIECAWA  171 (178)
T ss_dssp             -CCS-EEEETTSSCHHHHHHH
T ss_pred             -CCC-EEEECCCCCHHHHHHH
Confidence             233 4455555566665554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.6e-11  Score=113.97  Aligned_cols=121  Identities=17%  Similarity=0.367  Sum_probs=81.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc-------------------CCCCcHHHHHHHHHHHH----
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-------------------GKSGTKVQCLTSASSAL----   75 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~-------------------~~~~~~~~~~~~~~~~L----   75 (611)
                      |.+|+|.|||||||||+|+.|++.++  +.+|+.+++ +.                   +...........+...+    
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g--~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~   78 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTM   78 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccc
Confidence            67899999999999999999999998  667875443 21                   11111111222222222    


Q ss_pred             ---HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           76 ---KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        76 ---~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                         .....+++|+.+.+..+...+..+ ......-.+++++++.+++.+|..+|....+ +..+.++.+.++
T Consensus        79 ~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~-r~~~~~e~i~~r  149 (194)
T d1teva_          79 AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSG-RSDDNRESLEKR  149 (194)
T ss_dssp             HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSS-CCSCCHHHHHHH
T ss_pred             hhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCccc-CCccchHHHHHH
Confidence               124679999999998888777666 5554445688999999999999999976543 333444444333

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=1.2e-11  Score=115.91  Aligned_cols=141  Identities=12%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe---ec-----------------chh----ccCCCCcHH----------
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI---CQ-----------------DTI----NKGKSGTKV----------   65 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I---s~-----------------D~i----~~~~~~~~~----------   65 (611)
                      ..+|+|+|||||||||+++.|.+.++..+..+   ++                 +.+    ..+.+..+.          
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            36899999999999999999998875322211   11                 111    011111110          


Q ss_pred             HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        66 ~~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      .....+...+..|..+++|.      .+..+..+ ......+.+++++++.+++.+|+.+|+.       +.++++-.|+
T Consensus        82 ~~~~~~~~~~~~g~~~i~~~------~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~-------~~~e~I~~Rl  148 (182)
T d1znwa1          82 TLAQPVRAAAATGVPVLIEV------DLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGT-------ETADVIQRRL  148 (182)
T ss_dssp             EEHHHHHHHHHHTCCEEEEC------CHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSC-------SCHHHHHHHH
T ss_pred             cccchhhhhhhcCCcccccc------ccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCc-------chHHHHHHHH
Confidence            01256677888999999998      56666666 4445556677778889999999999976       4567777777


Q ss_pred             HhhccCCCccCCccEEEEcCChhhHHHHHHHh
Q 007244          145 LQKKELPKLSEGFSRITLCQNENDVQAALDTY  176 (611)
Q Consensus       145 ~~~~e~P~~~EgFd~V~vv~~~~evd~av~~~  176 (611)
                      .....+......||.|++++   +++++..++
T Consensus       149 ~~~~~e~~~~~~fD~vI~Nd---dle~a~~~l  177 (182)
T d1znwa1         149 DTARIELAAQGDFDKVVVNR---RLESACAEL  177 (182)
T ss_dssp             HHHHHHHHGGGGSSEEEECS---SHHHHHHHH
T ss_pred             HHHHHHHhhHhcCCEEEECc---CHHHHHHHH
Confidence            65543334456689998764   355555443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.20  E-value=1.6e-11  Score=115.34  Aligned_cols=104  Identities=23%  Similarity=0.291  Sum_probs=71.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------------CCCCcHHHHH----HHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCL----TSASSAL   75 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------------~~~~~~~~~~----~~~~~~L   75 (611)
                      .|..|+|+|||||||||+|+.|++.++  +.+|+.+.+..                   +.........    .......
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~--~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   79 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPD   79 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHC--CcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcc
Confidence            466799999999999999999999998  66788654421                   1121111111    1222222


Q ss_pred             HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        76 ~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .....+|+|+.+.+..+...+... ...   -.+|+|++|.+++.+|+..|..
T Consensus        80 ~~~~~~vid~~~~~~~q~~~l~~~~~~p---~~~i~L~~~~e~l~~R~~~~~~  129 (189)
T d1zaka1          80 AQENGWLLDGYPRSYSQAMALETLEIRP---DTFILLDVPDELLVERVVFDDT  129 (189)
T ss_dssp             HHHTCEEEESCCCSHHHHHHHHTTTCCC---SEEEEEECCHHHHHHHHTTTCC
T ss_pred             cccCcEEeeccchhhHHHhhhhhccccc---chheeechhhhhhhhhccccch
Confidence            334579999998888887777544 222   2489999999999999977755

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=5.3e-11  Score=110.62  Aligned_cols=100  Identities=21%  Similarity=0.303  Sum_probs=70.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---CCc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GKS   80 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---Gk~   80 (611)
                      |+|+|||||||||+|+.|++.++  +.+|+.+.+ +                  .+...+...+...+.+.+..   ...
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~--~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            78899999999999999999998  555775444 1                  12222222233444444432   246


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +|+|+.+.+..+...+.+. ...+   .+|+|++|.+++.+|+.+|..
T Consensus        81 ~i~~g~pr~~~~~~~~~~~~~~~~---~vi~L~~~~~~l~~R~~~~~~  125 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKEAGINVD---YVLEFDVPDELIVDRIVKDDQ  125 (179)
T ss_dssp             EEEESCCCSHHHHHHHHHTTCCCS---EEEEEECCHHHHHHHHHTTCS
T ss_pred             eeecccccchHHhhhhhhccCCce---EEEEeccchhhhhhhhccccc
Confidence            9999999888777766555 3333   488999999999999988854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.9e-10  Score=108.28  Aligned_cols=122  Identities=16%  Similarity=0.321  Sum_probs=79.3

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc-hhcc-------------------CCCCcHHHHHHHH----H
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINK-------------------GKSGTKVQCLTSA----S   72 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D-~i~~-------------------~~~~~~~~~~~~~----~   72 (611)
                      +++..+|+|+|||||||||+|+.|++.++  +.+|+.+ .++.                   +...........+    .
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g--~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   82 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   82 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence            45567888899999999999999999998  6678853 3321                   1111111111222    2


Q ss_pred             HH-HHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           73 SA-LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        73 ~~-L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      .. ......+|+|+.+.+..+...+... ...+   .++++++|.+++.+|...|....+ +.+...+.+.+|+
T Consensus        83 ~~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~---~~i~l~~~~e~~~~R~~~~~~~~~-r~~~~~e~~~~r~  152 (196)
T d1ukza_          83 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGKTSG-RSDDNIESIKKRF  152 (196)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHHHHC-CTTCSHHHHHHHH
T ss_pred             hhhccCCCceeeeccchhHHHHHHHHHhccccc---eeeccCCCHHHHHHHHHhcccccc-ccchHHHHHHHHH
Confidence            22 2234579999999888877776655 4433   488999999999999988765332 2223444444444

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=8.6e-11  Score=109.37  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHH---CCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK---KGK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~---~Gk   79 (611)
                      -|+|.|||||||||+|+.|++.++  +.+|+.+.+.                   .+.....+.....+...+.   ...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g--~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   79 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAAN   79 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccccc
Confidence            378899999999999999999998  5567754441                   1222222333344444443   345


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      .+|+|+.+....+...+... ...+. .-.++++++|.+++.+|+..|.+.
T Consensus        80 ~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~  130 (181)
T d2cdna1          80 GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA  130 (181)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCT
T ss_pred             cEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccc
Confidence            69999999999888887776 33333 336889999999999999998764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=1.7e-10  Score=108.72  Aligned_cols=105  Identities=26%  Similarity=0.409  Sum_probs=77.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC-
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK-   77 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~-   77 (611)
                      .++.+|+|+|||||||||+|+.|++.++  +.+|+.+.+ +                  .+...+.+.+...+..++.. 
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g--~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAK   83 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhC--CeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhc
Confidence            4678899999999999999999999998  677885444 2                  23333334444555555543 


Q ss_pred             ---CCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           78 ---GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        78 ---Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                         ...+|+|+.+.+..+...+... ....   .+++++++.+++.+|...|..
T Consensus        84 ~~~~~g~ildg~pr~~~qa~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~~~  134 (194)
T d3adka_          84 VDTSKGFLIDGYPREVKQGEEFERKIGQPT---LLLYVDAGPETMTKRLLKRGE  134 (194)
T ss_dssp             TTTCSCEEEESCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred             ccccccceeeeccchhHHHHHHHHHhCCcc---chhccccchhhhHhHhhhhcc
Confidence               3459999999998888887665 4333   478899999999999877754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.15  E-value=1.2e-10  Score=109.26  Aligned_cols=118  Identities=20%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec-chhc------------------cCCCCcHHHHHHHHHHHHH---C
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTIN------------------KGKSGTKVQCLTSASSALK---K   77 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~-D~i~------------------~~~~~~~~~~~~~~~~~L~---~   77 (611)
                      +.-|+|+|||||||||+|+.|++.++  +.+|+. |.++                  .+.....+.+...+...+.   .
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g--~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~   80 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   80 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc
Confidence            33456789999999999999999998  667875 4443                  1233333344455555553   3


Q ss_pred             CCcEEEecCCCCHHHHHHHHHh-CC-CCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHH
Q 007244           78 GKSVFLDRCNLEREQRTDFVKL-GG-PEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (611)
Q Consensus        78 Gk~VIID~tnl~~~~R~~~~~l-~~-~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~r  143 (611)
                      ...+|+|+.+....+...+... .. ......++++++|.+++.+|+..|..+.    +..++.+.+|
T Consensus        81 ~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~----d~~~e~i~~R  144 (190)
T d1ak2a1          81 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHS----DDNKKALKIR  144 (190)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECC----CCCHHHHHHH
T ss_pred             cCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCC----chhhHHHHHH
Confidence            3569999999998888877665 32 2234468889999999999999998753    2445544444

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.10  E-value=2.3e-10  Score=110.26  Aligned_cols=113  Identities=18%  Similarity=0.173  Sum_probs=87.4

Q ss_pred             ccCCCcEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhccCCC---C--cH--H----HHHHHHHHHHHCCC
Q 007244           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKS---G--TK--V----QCLTSASSALKKGK   79 (611)
Q Consensus        15 ~~~~~p~LIvLvG~PGSGKST~A~~L~~~~----~~~~~~Is~D~i~~~~~---~--~~--~----~~~~~~~~~L~~Gk   79 (611)
                      ....++.+|+|+|+|||||||+|+.|.+.+    +....+++.|.++....   +  ..  .    .....+......|.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~~~g~   98 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNS   98 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHhccCC
Confidence            467889999999999999999999998654    45677899999975421   1  11  1    23356667778899


Q ss_pred             cEEEecCCCCHHHHHHHHHh-------CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-------~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+|++........|..+.++       +........||+++|.++|.+|..+|..
T Consensus        99 ~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y  153 (208)
T d1m7ga_          99 IAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLY  153 (208)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHH
T ss_pred             ceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccch
Confidence            99999999999999887764       2345567889999999999999876654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1.6e-10  Score=108.68  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhccCC-----------CC-c-----HHH----HHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----------SG-T-----KVQ----CLTSASSAL   75 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i~~~~-----------~~-~-----~~~----~~~~~~~~L   75 (611)
                      |+||+|+|+|||||||+|++|++.++   .....++.|.++...           .. .     ...    ....+...+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            88999999999999999999998764   345678888775210           00 0     001    112222333


Q ss_pred             --HCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        76 --~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                        ..|..+|+|+++....+|..+.++ +..+..+.++.+.++.+.+.+++..+
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQ  134 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHH
Confidence              235678999999999999999999 88888888888899888887776544

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2.6e-09  Score=100.77  Aligned_cols=130  Identities=12%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEE----ee-----------------cchh----ccCCCCcHH--------HHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWAR----IC-----------------QDTI----NKGKSGTKV--------QCLT   69 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~----Is-----------------~D~i----~~~~~~~~~--------~~~~   69 (611)
                      |||+|||||||||++++|++.++..+..    .+                 .+.+    ..+.+..+.        ....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            8899999999999999999987643321    11                 1111    011111100        0125


Q ss_pred             HHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhc
Q 007244           70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (611)
Q Consensus        70 ~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~  148 (611)
                      .+...+..|..++++.      .......+ ......+.+++++++.+++.+|+.+|..       +..+++.+|+.+..
T Consensus        83 ~v~~~~~~g~~~~~~~------~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~-------~~~e~i~~rl~~~~  149 (190)
T d1lvga_          83 AVRAVQAMNRICVLDV------DLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAKRLAAAR  149 (190)
T ss_dssp             HHHHHHHTTCEEEEEC------CHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHHHHHHHH
T ss_pred             hhhhhhcCCCceeecc------hHhhhhhhhhccccceEEEEecchHHHHHHHHhhccc-------cchHHHHHHHHHHH
Confidence            6778889999999988      45555555 4444455666677788999999999976       46677777776653


Q ss_pred             cCC---CccCCccEEEEcCC
Q 007244          149 ELP---KLSEGFSRITLCQN  165 (611)
Q Consensus       149 e~P---~~~EgFd~V~vv~~  165 (611)
                      ...   .....||.++++++
T Consensus       150 ~~~~~~~~~~~fd~iI~N~d  169 (190)
T d1lvga_         150 TDMESSKEPGLFDLVIINDD  169 (190)
T ss_dssp             HHTTGGGSTTTCSEEEECSS
T ss_pred             HHHHhhhhcCCCCEEEECcC
Confidence            322   22334888887754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=4.4e-10  Score=105.71  Aligned_cols=139  Identities=15%  Similarity=0.210  Sum_probs=88.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeE----Ee-----------------ecchh----ccCCCCcHHH--------HHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWA----RI-----------------CQDTI----NKGKSGTKVQ--------CLT   69 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~----~I-----------------s~D~i----~~~~~~~~~~--------~~~   69 (611)
                      |+|+|||||||||++++|++.++..+.    +.                 +.+.+    ..+.+..+..        ...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            899999999999999999998753221    11                 11111    1222221110        125


Q ss_pred             HHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244           70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        70 ~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      .+...+..|..+|+|.      .+..+..+ ...+. .+.+++++++.+++.+|+.+|+.       +.++++-.|+...
T Consensus        84 ~i~~~~~~g~~~i~~~------~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~-------~~~~~I~~Rl~~~  150 (186)
T d1gkya_          84 SVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSAA  150 (186)
T ss_dssp             HHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSC-------SCHHHHHHHHHHH
T ss_pred             hHHHHhcCCCeEEecc------hHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhcc-------chhHHHHHHHHHH
Confidence            6778889999999998      45555555 43443 35567788899999999999976       4667777777664


Q ss_pred             ccCCCc--cCCccEEEEcCChhhHHHHHHHhc
Q 007244          148 KELPKL--SEGFSRITLCQNENDVQAALDTYS  177 (611)
Q Consensus       148 ~e~P~~--~EgFd~V~vv~~~~evd~av~~~~  177 (611)
                      ..+...  ...||.|++++   +++.+..++.
T Consensus       151 ~~e~~~~~~~~fd~vI~N~---dle~a~~~l~  179 (186)
T d1gkya_         151 QAELAYAETGAHDKVIVND---DLDKAYKELK  179 (186)
T ss_dssp             HHHHHHHTTTCSSEEEECS---SHHHHHHHHH
T ss_pred             HHHHHhhhhcCCCEEEECc---CHHHHHHHHH
Confidence            332221  23478887764   3555555443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.01  E-value=6e-10  Score=103.73  Aligned_cols=102  Identities=17%  Similarity=0.233  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-c------------------cCCCCcHHHHHHHHHHHHHC---CC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK   79 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---Gk   79 (611)
                      .|+|+|||||||||+|+.|++.++  +.+++.+++ +                  ++...+.......+...+..   ..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~   79 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG--TPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDN   79 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccccccc
Confidence            378999999999999999999999  445765333 2                  22233333333444444432   34


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      .+|+|+.+.+..+...+.+. ...+. ....+.++++.+.+.+|+..+
T Consensus        80 ~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1s3ga1          80 GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD  127 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             ceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc
Confidence            69999999999888877765 43333 346778999999999997654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.01  E-value=1.5e-10  Score=105.60  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=69.1

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------CCCC---cHHHHHHHHHHHHHCCCc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------GKSG---TKVQCLTSASSALKKGKS   80 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------~~~~---~~~~~~~~~~~~L~~Gk~   80 (611)
                      ++++..|+|+|+|||||||+|+.|++.++. +.+++.+.+..             ....   ....+...+...+..+..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN   80 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTT-EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCC-CcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhccc
Confidence            577888999999999999999999999863 34455554421             0011   112234566677778888


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +++|.....      +  +.. .....+|+|++|.+++.+|+.+|..
T Consensus        81 ~~~~~~~~~------~--~~~-~~~~~vI~L~~~~e~l~~Rl~~R~~  118 (174)
T d1y63a_          81 HVVDYHSSE------L--FPE-RWFHMVVVLHTSTEVLFERLTKRQY  118 (174)
T ss_dssp             EEEECSCCT------T--SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             ccccHHHHH------H--HHH-hcCceEEEEECCHHHHHHHHHhCCC
Confidence            999884432      1  111 1122478999999999999999976

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.6e-09  Score=100.45  Aligned_cols=111  Identities=19%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhccCCCC----cH-------HHHHHHHHHHHHCCCcEE
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSVF   82 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~~~~~~----~~-------~~~~~~~~~~L~~Gk~VI   82 (611)
                      ..++.+|+|+|+|||||||+|++|++.++.   ....+..|.++.....    ..       ......+...+..+..++
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCI   95 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccc
Confidence            446789999999999999999999998752   2344555555432111    11       122355667778888999


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ++..+.....+..+..+ ......+..+.+..+..++.+|..+|..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  141 (195)
T d1x6va3          96 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLY  141 (195)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTTCCEEEEEECC--------------
T ss_pred             cccccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhh
Confidence            99999888888888877 6666666777788888888877766543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.98  E-value=1.8e-10  Score=106.44  Aligned_cols=98  Identities=21%  Similarity=0.199  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC----c------HH---HHHHHHHHHHHCCCcEEEec--C
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----T------KV---QCLTSASSALKKGKSVFLDR--C   86 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~----~------~~---~~~~~~~~~L~~Gk~VIID~--t   86 (611)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+    .      +.   +....+...+.....+++.+  .
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg--~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~   81 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGM   81 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhccccceecccccc
Confidence            377889999999999999999999  555888776321111    0      01   11122222223333444443  2


Q ss_pred             CCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        87 nl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ......|..+   +..+.   +|||++|.+++.+|+..|..
T Consensus        82 ~~~~~~~~~l---~~~~~---~v~L~~~~e~l~~Rl~~~~~  116 (170)
T d1e6ca_          82 VLLEQNRQFM---RAHGT---VVYLFAPAEELALRLQASLQ  116 (170)
T ss_dssp             GGSHHHHHHH---HHHSE---EEEEECCHHHHHHHHHHHHC
T ss_pred             hhhhHHHHhh---hccce---eEEEecCchhHHHHHhhccc
Confidence            2333444433   22333   88999999999999987755

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.97  E-value=1.5e-09  Score=102.45  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh-cc------------------CCCCcHHHHHHHHHHHHH--C
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K   77 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~   77 (611)
                      +..-|+|+|||||||||+|+.|++.++  +.+|+.+++ ++                  +.....+.+...+.+.+.  .
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE--LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            344577889999999999999999999  777886444 21                  222222223333333332  3


Q ss_pred             CCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        78 Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      ...+|+|+.+.+..+...+-...   ....+|+|++|.+++.+|+..|.
T Consensus        83 ~~~~ildGfPr~~~q~~~l~~~~---~~~~vi~L~v~~~~l~~R~~~r~  128 (189)
T d2ak3a1          83 QYNWLLDGFPRTLPQAEALDRAY---QIDTVINLNVPFEVIKQRLTDRP  128 (189)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTC---CCCEEEEEECCHHHHHHHHTGSH
T ss_pred             hcCcccccccchhhHHHHhhhcC---cceEEEEEeccchhhhhhcccch
Confidence            45699999999888776553221   12357899999999999997664

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=1.8e-09  Score=100.48  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHH----CCC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK----KGK   79 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~----~Gk   79 (611)
                      |+|.|||||||||+|+.|++.++  +.+|+.+++.                   .+...........+..++.    .+.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g--~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            67889999999999999999998  6678865442                   1222222223333434443    345


Q ss_pred             cEEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhcc
Q 007244           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        80 ~VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .+|+|+.+.+..+...+..+ ...+. .-.+|+|+++.+++.+|+..|.
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            69999999998888776665 33222 3468899999999999987664

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.94  E-value=1.2e-09  Score=100.76  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc-------------------cCCCCcHHHHHHHHHHHHHC---CCc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GKS   80 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---Gk~   80 (611)
                      |+|+|+|||||||+|+.|++.++  +.+|+.+++.                   .+...+.......+.+.+..   ...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~--~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG--IPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            88999999999999999999998  5557755442                   12222222333344444433   245


Q ss_pred             EEEecCCCCHHHHHHHHHh-CCCCC-eEEEEEEeCCHHHHHHHHHhccc
Q 007244           81 VFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        81 VIID~tnl~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      +|+++.+....+...+... ...+. ...+++++++.+.+.+|+..|..
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~  129 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDN  129 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccc
Confidence            9999988888776666555 33333 34688899999999999987754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.91  E-value=3.8e-09  Score=102.81  Aligned_cols=112  Identities=13%  Similarity=0.174  Sum_probs=89.0

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCc-----------H--------HHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-----------K--------VQCLTSASSALK   76 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~-----------~--------~~~~~~~~~~L~   76 (611)
                      ....|+.|+|.|||||||||+|+.++..++..+..|+.|.++......           .        ..........+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  107 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHHh
Confidence            456789999999999999999999999998888899999886422110           0        011244456777


Q ss_pred             CCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        77 ~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+.+.++|.++........++.. ...++.+.+.++..+.+++..|+..|..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~~  159 (273)
T d1gvnb_         108 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE  159 (273)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCCc
Confidence            88899999998888888878777 8888888899999999999999888753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.91  E-value=3.8e-10  Score=103.70  Aligned_cols=139  Identities=12%  Similarity=0.073  Sum_probs=77.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCC-------------cHHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~-------------~~~~~~~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      |+|+|+|||||||+++.|++.++.  .+++.|.+-....+             ........+...+.....+|+......
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~--~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~~   80 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL--VFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   80 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC--EEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC--CEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccch
Confidence            788899999999999999999994  45777765211110             111223455666666666666553211


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhhH
Q 007244           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (611)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~ev  169 (611)
                       ..+..   +...+   .+|||++|.+++.+|+..|..+.+  +-...+..++.++..+. |.+ +...++++..+...+
T Consensus        81 -~~~~~---l~~~~---~vI~L~~s~~~l~~Rl~~~~~~~R--p~~~~~~~~~~l~~~r~-~~Y-~~~ad~~Idt~~~s~  149 (161)
T d1viaa_          81 -VNVSN---LEKAG---FCIYLKADFEYLKKRLDKDEISKR--PLFYDEIKAKKLYNERL-SKY-EQKANFILNIENKNI  149 (161)
T ss_dssp             -GGSTT---GGGGC---EEEEEECCHHHHTTCCCGGGTTTS--CTTCCHHHHHHHHHHHH-HHH-HHHCSEEEECTTCCH
T ss_pred             -hhHHH---HHhCC---eEEEeccchHHHHHHHcccccccc--ccccCchHHHHHHHHHH-HHH-HhhCCEEEECCCCCH
Confidence             11111   13333   379999999999999877654321  11123444555544332 111 222334444443455


Q ss_pred             HHHHH
Q 007244          170 QAALD  174 (611)
Q Consensus       170 d~av~  174 (611)
                      ++++.
T Consensus       150 eei~~  154 (161)
T d1viaa_         150 DELLS  154 (161)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=2.6e-09  Score=97.90  Aligned_cols=140  Identities=20%  Similarity=0.218  Sum_probs=76.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc---CCCC-----------cHHHHHHHHHHHHHCCCcEEEecCC-
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKSG-----------TKVQCLTSASSALKKGKSVFLDRCN-   87 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~---~~~~-----------~~~~~~~~~~~~L~~Gk~VIID~tn-   87 (611)
                      |+|+|+|||||||+++.|++.++.+|  ++.|.+-.   +...           .+......+...+.....+|+.+.. 
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~f--iD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~~   81 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGL--LDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA   81 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCE--EEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCe--EeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccccccccc
Confidence            55669999999999999999999766  66665421   1100           0111113334445555555544321 


Q ss_pred             -CCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCCh
Q 007244           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (611)
Q Consensus        88 -l~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~  166 (611)
                       +....+..   +. .+.   +|||.++.+++.+|+..|..++. .......+.+++++.... |. ++...++++..+.
T Consensus        82 ~~~~~~~~~---l~-~~~---~I~L~~~~~~~~~R~~~~~~Rpl-l~~~~~~e~~~~l~~eR~-~~-Y~~~ad~~Idt~~  151 (165)
T d2iyva1          82 VTSPGVRAA---LA-GHT---VVYLEISAAEGVRRTGGNTVRPL-LAGPDRAEKYRALMAKRA-PL-YRRVATMRVDTNR  151 (165)
T ss_dssp             GGSHHHHHH---HT-TSC---EEEEECCHHHHHHHTTCCCCCSS-TTSCCHHHHHHHHHHHHH-HH-HHHHCSEEEECSS
T ss_pred             ccccccccc---cc-ccc---eeeeeccchhhhhcccccccchh-ccCccHHHHHHHHHHHHH-HH-HHhhCCEEEECCC
Confidence             22222221   12 233   68999999999999977665432 222344555665554321 11 1222334454444


Q ss_pred             hhHHHHHH
Q 007244          167 NDVQAALD  174 (611)
Q Consensus       167 ~evd~av~  174 (611)
                      ..+++++.
T Consensus       152 ~s~~ei~~  159 (165)
T d2iyva1         152 RNPGAVVR  159 (165)
T ss_dssp             SCHHHHHH
T ss_pred             CCHHHHHH
Confidence            45555554

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=2.9e-10  Score=107.90  Aligned_cols=108  Identities=9%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             chhhhhhHHHHHHhhcCC-CCCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCCC
Q 007244          196 DAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSS  274 (611)
Q Consensus       196 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  274 (611)
                      ....++.|++.++..... .....+++     .  .|.+.++.|.++.|++.|.|..  ....+.+...-.+|+..|.++
T Consensus        50 ~~~~G~~l~~e~~~~~~~~~~~~~g~~-----~--vT~~~~L~~k~IiH~v~P~~~~--~~~~~~L~~~~~~~L~~a~~~  120 (188)
T d1yd9a1          50 EKKGGKEFVEAVLELRKKNGPLEVAGA-----A--VSAGHGLPAKFVIHCNSPVWGS--DKCEELLEKTVKNCLALADDR  120 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCCTTCE-----E--EEECTTSSSSEEEEECCCCTTS--TTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCe-----e--ecccCCCCceEEeeeccccCCC--cchHHHHHHHHHHHHHHHHHc
Confidence            344477777776543321 11111222     1  3667788999999999999986  333334445667788999999


Q ss_pred             CCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007244          275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (611)
Q Consensus       275 ~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~  312 (611)
                      +++|||||+||||+||||.++||+++++++.+|+.+++
T Consensus       121 ~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~  158 (188)
T d1yd9a1         121 KLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTM  158 (188)
T ss_dssp             TCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCT
T ss_pred             CCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.73  E-value=1.6e-08  Score=91.22  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhcc-------------CCCCcHHHHHHHHHHHHHCCCcEEEecCCCC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------GKSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~-------------~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~   89 (611)
                      |+|+|+|||||||+|+.|+++++  +.+++.|.+..             ........+...+....... ..+++.....
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   83 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREG-GVIVDYHGCD   83 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHC-CEEEECSCCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhcC-CcccchhHHH
Confidence            67999999999999999999999  44466544421             11112233334443333333 3444442211


Q ss_pred             HHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                            +  +.. .....+|++++|.+++.+|+.+|..
T Consensus        84 ------~--~~~-~~~~~~i~l~~~~~~~~~Rl~~r~~  112 (173)
T d1rkba_          84 ------F--FPE-RWFHIVFVLRTDTNVLYERLETRGY  112 (173)
T ss_dssp             ------T--SCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             ------H--HHH-hcCCCcceecCCHHHHHHHHHhcCC
Confidence                  1  011 1122478899999999999999976

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=2e-09  Score=100.30  Aligned_cols=111  Identities=11%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             chhhhhhHHHHHHhhcCCC-CCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCCC
Q 007244          196 DAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSS  274 (611)
Q Consensus       196 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  274 (611)
                      ....++.+++.+++..... ....+++     .  .|.+.++.|....|++.|.|..............-.+|+..|..+
T Consensus        37 ~~~~G~~~~~~~~~~~~~~g~~~~g~~-----~--~T~~~~l~~k~IiH~v~P~~~~~~~~~~~~l~~~~~~~L~~a~~~  109 (172)
T d1spva_          37 HRAAGPALLDACLKVRQQQGDCPTGHA-----V--ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAAN  109 (172)
T ss_dssp             HHHHCHHHHHHHHHHHHHHCSCCTTCE-----E--EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCchHHHHHHHHHHhCCCCCCCE-----E--EEEcCCCCCcEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHc
Confidence            3445677777766554321 1111222     1  255667889999999999887522222222334556689999999


Q ss_pred             CCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007244          275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (611)
Q Consensus       275 ~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~  313 (611)
                      +++|||||+||||+||||.++||+++++++.+|+++++.
T Consensus       110 ~~~sIa~P~lgtG~~g~p~~~~a~~~~~ai~~fl~~~~~  148 (172)
T d1spva_         110 SYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHAL  148 (172)
T ss_dssp             TCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999988654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.7e-08  Score=94.47  Aligned_cols=90  Identities=16%  Similarity=0.239  Sum_probs=56.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------------------Eeecchh----ccCCCCcHHH-------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA---------------------RICQDTI----NKGKSGTKVQ-------   66 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~---------------------~Is~D~i----~~~~~~~~~~-------   66 (611)
                      |..+|+|+||+||||||++++|.++++..+.                     .++.+.+    ..+.+.++..       
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YG   81 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeeccccee
Confidence            5678999999999999999999988653221                     1222222    1222222111       


Q ss_pred             -HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Q 007244           67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP  114 (611)
Q Consensus        67 -~~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p  114 (611)
                       -...+.+.+..|+.+|+|.      +.+.+..++.......+|++.+|
T Consensus        82 t~~~~i~~~~~~g~~~ildi------d~~g~~~lk~~~~~~~~IfI~pp  124 (178)
T d1kgda_          82 TKLETIRKIHEQGLIAILDV------EPQALKVLRTAEFAPFVVFIAAP  124 (178)
T ss_dssp             EEHHHHHHHHHTTCEEEEEC------CGGGHHHHSSTTTCEEEEEEECC
T ss_pred             eeeecccchhccCceEEecc------chhhhhhhhccccccceeeEecc
Confidence             0256778899999999998      44555555334444556666654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.66  E-value=1.2e-08  Score=92.91  Aligned_cols=105  Identities=11%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhc------cC-------CC-CcH---H---HHHHHHHHHHHC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTIN------KG-------KS-GTK---V---QCLTSASSALKK   77 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~i~------~~-------~~-~~~---~---~~~~~~~~~L~~   77 (611)
                      ++|+|.|+|||||||++++|++.++.   ....++.+...      ..       .. ...   .   .........+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            58999999999999999999987652   23334432221      00       00 000   0   111222344677


Q ss_pred             CCcEEEecCCCCHHH-------HHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           78 GKSVFLDRCNLEREQ-------RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        78 Gk~VIID~tnl~~~~-------R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                      +..+++|+.......       ...+....   .+..+++|+++.+++.+|..+|..+
T Consensus        82 ~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~~~~~R~~~~~~~  136 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYLPGLPSWVLNEL---NPDLIIVVETTGDEILMRRMSDETR  136 (190)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHHHHHH---CCSEEEEEECCHHHHHHHHHTSSSC
T ss_pred             CCeEEECCcccchHHHHHHHhhhhhhhhhc---cccceeeecCCHHHHHHHHHHhccc
Confidence            888999984322110       01111111   1234789999999999999887654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=6.5e-09  Score=92.31  Aligned_cols=147  Identities=12%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC---CCCc----------HHHHHHHHHHHHHCCCcEEEecCCC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSGT----------KVQCLTSASSALKKGKSVFLDRCNL   88 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~---~~~~----------~~~~~~~~~~~L~~Gk~VIID~tnl   88 (611)
                      .|+|+|||||||||+|+.|++.++.++  ++.|.+...   ....          ..............+...++.....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~--id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEE--EEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCe--EeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            488899999999999999999999554  666555321   1110          0111123333334444444444333


Q ss_pred             CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhhccCCCccCCccEEEEcCChhh
Q 007244           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNEND  168 (611)
Q Consensus        89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~e  168 (611)
                      ..........+...   ...+++..+..++..|...|..+............+.+....+... +.+ +.++.+..+...
T Consensus        82 ~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~-~~d~~Idt~~~s  156 (169)
T d1kaga_          82 SVKSRETRNRLSAR---GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPL-YEE-IADVTIRTDDQS  156 (169)
T ss_dssp             GGGSHHHHHHHHHH---SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHH-HHH-HCSEEC-----C
T ss_pred             hhhhhhhhHHhhhc---ceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhh-hhc-cCCEEEECCCCC
Confidence            22222222222111   2377888899999998877665433332233344444444333211 112 223444433445


Q ss_pred             HHHHHHH
Q 007244          169 VQAALDT  175 (611)
Q Consensus       169 vd~av~~  175 (611)
                      ++++++.
T Consensus       157 ~ee~v~~  163 (169)
T d1kaga_         157 AKVVANQ  163 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.64  E-value=1.9e-09  Score=102.35  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             ccccccc---cccccceeeccccccc-ccccCCCCcchhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHHHHHH
Q 007244          231 ITEEKNS---CLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (611)
Q Consensus       231 ~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~  306 (611)
                      |.+.++.   |.++.|++.|.|.... .+....+...-.+|+..|.+++++|||||+||||+||||.++||+++++++++
T Consensus        83 T~~~~L~~~~~k~ViH~v~P~~~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~ai~~  162 (192)
T d1vhua_          83 TPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKN  162 (192)
T ss_dssp             EECGGGGGGTCCEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred             EecccCCcccccEEEEEeeecccCCCcchhHHHHHHHHHHHHHHHHHcCCcEEEecCccCCCCCCCHHHHHHHHHHHHHH
Confidence            4555553   7889999999887522 11122334445667899999999999999999999999999999999999999


Q ss_pred             HHHhcCC-eEEEEee
Q 007244          307 FVNKLGN-ARLVLVD  320 (611)
Q Consensus       307 f~~~~~~-i~iV~vd  320 (611)
                      |...... +++|..|
T Consensus       163 f~~~~l~~V~~v~~~  177 (192)
T d1vhua_         163 FKGSAVKEVALVIYD  177 (192)
T ss_dssp             CCCSSCCEEEEEESS
T ss_pred             hccCCcCEEEEEECC
Confidence            9654432 4555543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.62  E-value=2.6e-08  Score=90.01  Aligned_cols=109  Identities=13%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhcc---CCC-CcHH------HHHHHHHHHHHCCCcEE
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK---GKS-GTKV------QCLTSASSALKKGKSVF   82 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~----~~~~Is~D~i~~---~~~-~~~~------~~~~~~~~~L~~Gk~VI   82 (611)
                      +.++.+|+|+|+|||||||+|++|++.++.    ....++.|..+.   ... ...+      .........+..+..++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV   82 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhccccee
Confidence            466789999999999999999999988752    233444444432   111 1111      11122233334444444


Q ss_pred             EecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        83 ID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      +.........+...... ......+..++++.+......|...+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
T d1m8pa3          83 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG  126 (183)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC
T ss_pred             ecccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhh
Confidence            44444444444333333 34455566777888888776665443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.59  E-value=1.5e-08  Score=93.57  Aligned_cols=53  Identities=21%  Similarity=0.202  Sum_probs=39.6

Q ss_pred             cccccccccccccCCCcEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchh
Q 007244            4 DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (611)
Q Consensus         4 ~~~~~c~~~~~~~~~~p~LIvLvG~PGSGKST~A~~L~~~~~---~~~~~Is~D~i   56 (611)
                      .++..|......+...|.+|.+.|++||||||+|+.|.+.++   .....++.|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            456677777666677799999999999999999999988655   23344555444

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=5.4e-07  Score=85.15  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec--------chh----ccC-----C-CCcH-----------HHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--------DTI----NKG-----K-SGTK-----------VQC   67 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~--------D~i----~~~-----~-~~~~-----------~~~   67 (611)
                      ..+|++-|++||||||+++.|.+.+   +...+.+..        +.+    ...     . ....           ...
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   81 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence            4689999999999999999998765   222222211        111    111     1 1111           011


Q ss_pred             HHHHHHHHHCCCcEEEecCCCC------------HHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        68 ~~~~~~~L~~Gk~VIID~tnl~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ...+..+|..|..||.|...+.            ......+... .....+=.+|+|++|.+++.+|+.+|+.
T Consensus        82 ~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~  154 (210)
T d4tmka_          82 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE  154 (210)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccc
Confidence            2445778899999999973211            1222222222 1112223588999999999999999975

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.4e-07  Score=85.13  Aligned_cols=116  Identities=18%  Similarity=0.282  Sum_probs=72.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCC--------CeEEeecchhccCC--------------CC-----cHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARICQDTINKGK--------------SG-----TKVQCLTSA   71 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~--------~~~~Is~D~i~~~~--------------~~-----~~~~~~~~~   71 (611)
                      .|.+|.+.|++||||||+|+.|++.++.        ...+++.|.+....              +.     ....+.+.+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL   80 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhh
Confidence            4889999999999999999999998762        24567888763211              10     112222333


Q ss_pred             HHHHHCCC-------------------------cEEEecCCC-CHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           72 SSALKKGK-------------------------SVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        72 ~~~L~~Gk-------------------------~VIID~tnl-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      . .+..|.                         .+|+++..+ .......+.++        .||+++|.+++++|..+|
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~~l~~~~D~--------~i~v~~~~~~~~~R~~~R  151 (213)
T d1uj2a_          81 K-EITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQM--------KLFVDTDADTRLSRRVLR  151 (213)
T ss_dssp             H-HHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSE--------EEEEECCHHHHHHHHHHH
T ss_pred             h-hhhcCCcccccccccccccccCceEEecccceEEecchhhhccHHHHhhhhe--------eeeecCCHHHHHHHHHHH
Confidence            2 333332                         257777443 22333344333        889999999999999988


Q ss_pred             ccccCCCCCCCHHHHHHHHHh
Q 007244          126 IEHEGNLQGGKAAAVVNRMLQ  146 (611)
Q Consensus       126 ~~~~g~~~~~vpeevi~rm~~  146 (611)
                      ....++   ..+++++..+.+
T Consensus       152 d~~~rg---~~~e~~~~~~~~  169 (213)
T d1uj2a_         152 DISERG---RDLEQILSQYIT  169 (213)
T ss_dssp             HHHHSC---CCHHHHHHHHHH
T ss_pred             HHHHcC---CCHHHHHHHHHH
Confidence            653322   456666655544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6.2e-07  Score=85.56  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec--------chh----ccCCCCc-HH----------HHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--------DTI----NKGKSGT-KV----------QCLTSAS   72 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~--------D~i----~~~~~~~-~~----------~~~~~~~   72 (611)
                      ++.+|++.|+.||||||+++.|.+.+   +..+..+..        ..+    ....... ..          +....+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~   81 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK   81 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhHH
Confidence            45799999999999999999998765   333333321        011    1111111 10          1125667


Q ss_pred             HHHHCCCcEEEecCCCCHHHHH--------HHHH-h-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           73 SALKKGKSVFLDRCNLEREQRT--------DFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        73 ~~L~~Gk~VIID~tnl~~~~R~--------~~~~-l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .+|..|..||+|...+..-..+        .++. + .....+=.+|+|++|.+++.+|...|..
T Consensus        82 ~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~  146 (209)
T d1nn5a_          82 EKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE  146 (209)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc
Confidence            8889999999998433221111        1222 2 2222233688999999999999765543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=9.9e-07  Score=82.49  Aligned_cols=154  Identities=19%  Similarity=0.156  Sum_probs=82.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecch--------h----ccCCCC----cHH---H--------HHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT--------I----NKGKSG----TKV---Q--------CLTSA   71 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~--------i----~~~~~~----~~~---~--------~~~~~   71 (611)
                      +|++.|+.||||||+++.|.+.+   +..+..+....        +    ..+...    ...   .        .....
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI   81 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHhH
Confidence            79999999999999999998865   33333332111        0    011110    000   0        11334


Q ss_pred             HHHHHCCCcEEEecCCCCHHHH--------------HHHHHh----CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 007244           72 SSALKKGKSVFLDRCNLEREQR--------------TDFVKL----GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (611)
Q Consensus        72 ~~~L~~Gk~VIID~tnl~~~~R--------------~~~~~l----~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~  133 (611)
                      ...+..+..+|+|...+.....              ..+..+    .....+-.+|+|++|.+++.+|+.+|.+......
T Consensus        82 ~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~  161 (208)
T d1gsia_          82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA  161 (208)
T ss_dssp             HHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhccccccc
Confidence            4556678899999843322111              111111    1122334688999999999999999975321111


Q ss_pred             -C--CCHHHHHHHHHhhccCCCccCCccEEEEcCChhhHHHHHHH
Q 007244          134 -G--GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       134 -~--~vpeevi~rm~~~~e~P~~~EgFd~V~vv~~~~evd~av~~  175 (611)
                       +  +...+.+.++.+.+..-.....-..+++++...+++++...
T Consensus       162 ~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~  206 (208)
T d1gsia_         162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAAT  206 (208)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHh
Confidence             1  11344555544443221111112346777766777766543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1.4e-07  Score=87.83  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .|.+|.++|++||||||+|+.| +++|  +.+++.|.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g--~~~~~~D~~   36 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWG--YPVLDLDAL   36 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTT--CCEEEHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCC--CeEEEccHH
Confidence            4789999999999999999987 5677  445776665

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.34  E-value=1.2e-06  Score=79.67  Aligned_cols=150  Identities=17%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecch-hc-----cCCCC--------cH-HH------HHHHHHHHH-
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDT-IN-----KGKSG--------TK-VQ------CLTSASSAL-   75 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~---~~~~Is~D~-i~-----~~~~~--------~~-~~------~~~~~~~~L-   75 (611)
                      ++|+|.|+|||||||+++.|++.++.   .+..++.+. ++     .....        .. ..      ....+.+.. 
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            47899999999999999999988753   344444322 21     11110        01 11      111222222 


Q ss_pred             HCC-CcEEEecCCCCHH-------HHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHHHhh
Q 007244           76 KKG-KSVFLDRCNLERE-------QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (611)
Q Consensus        76 ~~G-k~VIID~tnl~~~-------~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm~~~  147 (611)
                      ..+ ..+++|+..+...       ....+....   .+..+++|++|.+++.+|+.+|..+...  ....+....+....
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~~~~~R~~~r~~~~r~--~~~~~~~~~~~~~~  156 (194)
T d1nksa_          82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI---NPSVIFLLEADPKIILSRQKRDTTRNRN--DYSDESVILETINF  156 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHH---CCSEEEEEECCHHHHHHHHHHCTTTCCC--CCCSHHHHHHHHHH
T ss_pred             HhCCCcEEEEccCchHHHHHHHHhHHHHHHhhh---ccccceEEecCHHHHHHHHHHhhhcccc--cchHHHHHHHHHHH
Confidence            222 4456665221110       001111110   1235889999999999999988765432  23333333332221


Q ss_pred             c--cCCC--ccCCccEEEEcCChhhHHHHHHH
Q 007244          148 K--ELPK--LSEGFSRITLCQNENDVQAALDT  175 (611)
Q Consensus       148 ~--e~P~--~~EgFd~V~vv~~~~evd~av~~  175 (611)
                      .  ..+.  ...+....++.+++.+++++...
T Consensus       157 ~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~  188 (194)
T d1nksa_         157 ARYAATASAVLAGSTVKVIVNVEGDPSIAANE  188 (194)
T ss_dssp             HHHHHHHHHHHHTCEEEEEECCSSCHHHHHHH
T ss_pred             HHhHHHHHHHHhCCCeEEEECCCCCHHHHHHH
Confidence            1  0111  11233444555556667766653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.30  E-value=5.5e-07  Score=85.26  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC------------------CCC------cH----------
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------------------KSG------TK----------   64 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~------------------~~~------~~----------   64 (611)
                      |..+|.|+|.+||||||+|+.+ +++|  +.+++.|.+...                  ...      .+          
T Consensus         1 M~~iIgITG~igSGKStv~~~l-~~~G--~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~   77 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLF-TDLG--VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH   77 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHH-HTTT--CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred             CcEEEEEECCCCCCHHHHHHHH-HHCC--CeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhh
Confidence            4468889999999999999866 4677  445887766211                  000      00          


Q ss_pred             ------------HHHHHHHHHHHHCC--CcEEEecCCCCHHHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccccC
Q 007244           65 ------------VQCLTSASSALKKG--KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (611)
Q Consensus        65 ------------~~~~~~~~~~L~~G--k~VIID~tnl~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g  130 (611)
                                  ..+...+.+.....  ..+|+|...+.......     ...   .+|++++|.++..+|+.+|..   
T Consensus        78 ~~~~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~ll~e~~~~~-----~~d---~ii~v~~~~~~r~~R~~~R~~---  146 (205)
T d1jjva_          78 DEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTA-----LCD---RILVVDVSPQTQLARSAQRDN---  146 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGG-----GCS---EEEEEECCHHHHHHHHC-------
T ss_pred             hhhhhHhhcccCHHHHHHHHHHHhhccCCeEEEEeccccccchhh-----hhh---heeeecchHHHHHHHHHhcCC---
Confidence                        00112223333332  34777774433222111     122   378899999999999999965   


Q ss_pred             CCCCCCHHHHHHHHHhh
Q 007244          131 NLQGGKAAAVVNRMLQK  147 (611)
Q Consensus       131 ~~~~~vpeevi~rm~~~  147 (611)
                          ...+++..++..+
T Consensus       147 ----~s~e~~~~~~~~Q  159 (205)
T d1jjva_         147 ----NNFEQIQRIMNSQ  159 (205)
T ss_dssp             -----CHHHHHHHHHHS
T ss_pred             ----chHHHHHHHHHhC
Confidence                3445566666554

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.6e-07  Score=93.16  Aligned_cols=81  Identities=11%  Similarity=-0.006  Sum_probs=55.2

Q ss_pred             ccccccccccccce---eecccccccccc--cCCCCcc---hhhhcccCCCCCCCccccccCccCCCCCChHHHHHHHHH
Q 007244          231 ITEEKNSCLEGQEI---TSLLSDAAGEEV--KGTENPE---VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIE  302 (611)
Q Consensus       231 ~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~---~~s~~~~~~~~~~~SiAfPaIStGi~gfP~~~aa~Iiv~  302 (611)
                      +.+.++.|.++-|+   +.|.+.....+.  ....+..   ..+++ .+.+++++|||||+||||+||||.++||++++.
T Consensus       118 ~~~~nl~~kyVIHaPTMv~P~~~~~~~~~~~~~~~~~l~~a~~~~L-~a~e~~i~SIAfPaigTGvgg~p~~~aAr~m~~  196 (264)
T d1njra_         118 TIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNAL-MHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAF  196 (264)
T ss_dssp             ---CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHH-HTSCTTCSEEEECCTTCSTTCCCHHHHHHHHHH
T ss_pred             cccccCCCCEEEECcccccCCCCCCCchHHHHHHHHHHHHHHHHHH-HHhhcCCCEEEeCccccCCCCcCHHHHHHHHHH
Confidence            44568899999998   455443311110  0011111   11222 456779999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 007244          303 KVEEFVNKLG  312 (611)
Q Consensus       303 tv~~f~~~~~  312 (611)
                      ++++|+.+++
T Consensus       197 Ai~~fl~~~~  206 (264)
T d1njra_         197 ALRLYMAGDH  206 (264)
T ss_dssp             HHHHHHTGGG
T ss_pred             HHHHHHHcCC
Confidence            9999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.4e-06  Score=82.73  Aligned_cols=35  Identities=31%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      |+.+|.|+|.+||||||+|+.+ +.+|  +.+++.|.+
T Consensus         2 mk~iIgitG~igSGKStv~~~l-~~~G--~~vidaD~i   36 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAF-ADLG--INVIDADII   36 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHH-HHCC--CcEEEchHH
Confidence            5678999999999999999866 5677  667887766

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=98.09  E-value=6.1e-07  Score=83.07  Aligned_cols=112  Identities=11%  Similarity=0.026  Sum_probs=70.6

Q ss_pred             CchhhhhhHHHHHHhhcCCC-CCCCCCCCCCCCCCCcccccccccccccceeecccccccccccCCCCcchhhhcccCCC
Q 007244          195 PDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (611)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  273 (611)
                      .....++.|.+.+++..... ....+++     .  .|.+.++ ++...|++.|.|..  ..    .......|+  +..
T Consensus        52 I~~~aG~~l~~e~~~~~~~~g~~~~G~~-----v--~t~g~~l-~k~IiH~v~P~~~~--~~----~~~ll~~~~--~~~  115 (168)
T d2acfa1          52 LNKATNGAMQKESDDYIKLNGPLTVGGS-----C--LLSGHNL-AKKCLHVVGPNLNA--GE----DIQLLKAAY--ENF  115 (168)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHCCCCTTCE-----E--EEECTTT-CSEEEEECCCCGGG--TC----CTTHHHHHH--HGG
T ss_pred             HHHHhCHHHHHHHHHHHHhcCCCcCCCe-----E--eccCcCc-chhheeecCCCccc--cc----HHHHHHHHH--Hhh
Confidence            34455777777776554321 1111222     1  2444555 67899999998876  22    122233343  345


Q ss_pred             CCCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEeecCcchhhh
Q 007244          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKIL  328 (611)
Q Consensus       274 ~~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd~s~~s~~L  328 (611)
                      ++++|||||+||||+||||.++||+++++++++      .+.+|+.|...|...+
T Consensus       116 ~~~~sIA~PaigtG~~g~p~~~~a~~~~~~v~~------~V~fv~~d~~~~~~~~  164 (168)
T d2acfa1         116 NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKALYEQVV  164 (168)
T ss_dssp             GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHHHHHHH
T ss_pred             ccCceEEecccccCCCCCChHHHHHHHHHHHHH------hEEEEECCHHHHHHHH
Confidence            789999999999999999999999999999853      3555555444444433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.05  E-value=1.2e-05  Score=74.27  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~   46 (611)
                      ...+|.+|++-|+.||||||+++.|.+.++.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5678999999999999999999999988763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=1.5e-05  Score=75.81  Aligned_cols=110  Identities=13%  Similarity=0.089  Sum_probs=58.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecc--------hh----ccCC--CCcHH----------HHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD--------TI----NKGK--SGTKV----------QCLTSASS   73 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D--------~i----~~~~--~~~~~----------~~~~~~~~   73 (611)
                      +++.+|++-|+-||||||+++.|.+.+......+...        .+    .+..  .....          +....+..
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~   80 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKK   80 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999886444333210        11    1111  11111          11245677


Q ss_pred             HHHCCCcEEEecCCCCHHHH-----------HHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           74 ALKKGKSVFLDRCNLEREQR-----------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        74 ~L~~Gk~VIID~tnl~~~~R-----------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      ++..|..||.|...+..-.+           .....+ .....+=.+|+|++|..+...|...|..
T Consensus        81 ~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~  146 (214)
T d1tmka_          81 DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD  146 (214)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCS
T ss_pred             HHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccch
Confidence            88899999999843332111           112223 2222222688899998888877665554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.98  E-value=1.5e-05  Score=74.87  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=28.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +.+|.+.|||||||||+|+.|+++++  +.+++...+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg--~~~istGdl   37 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM   37 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CcEECHHHH
Confidence            34677889999999999999999999  667885433

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=4.1e-06  Score=84.68  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=34.6

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN   57 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~-----~~~~~Is~D~i~   57 (611)
                      ..+.|.+|.++|++||||||+|+.|...+.     .....|+.|.+.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            456789999999999999999999988763     346678988884

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.5e-05  Score=73.35  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=26.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP   47 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~   47 (611)
                      .|++|++-|+-||||||+++.|.+.++..
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            38899999999999999999999988743

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.87  E-value=9.8e-06  Score=81.04  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ++-||.++|.+||||||+++.+.+.+   +.....|+.|.+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            33489999999999999999876654   4456789999884

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=2.1e-05  Score=77.29  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK   79 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk   79 (611)
                      ...|.-++|.||||+|||++|+.++++++.++..++...+...+.+.....+..+.+......
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~  104 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA  104 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcC
Confidence            345678999999999999999999999998888888877776666655544444444444443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=7.9e-06  Score=73.18  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=27.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW   48 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~   48 (611)
                      -.++.|+|+|+|||||||+|++|++.++.++
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~~~   35 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNTTS   35 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            4567899999999999999999999998544

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8e-06  Score=76.29  Aligned_cols=35  Identities=23%  Similarity=0.558  Sum_probs=29.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      +-+|++.|||||||||+|+.|+++++  +.+|+..++
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g--l~~iStGdL   37 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAI   37 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--CcEECHHHH
Confidence            33889999999999999999999999  667885333

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.68  E-value=3.1e-05  Score=75.48  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=45.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~   76 (611)
                      ...|.-|+|.||||+|||++|+.++++++.++..++...+...+.+.....+..+.+...
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~   98 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK   98 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHH
Confidence            345667999999999999999999999998888888777766666655544444443333

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=8.6e-05  Score=72.44  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=42.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~   71 (611)
                      +.|.-|+|.||||+|||++++.++...+.++..++...+...+.+.....+..+
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~   89 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA   89 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHH
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHH
Confidence            456678999999999999999999999988888887777766666554444333

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=8.6e-05  Score=72.83  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=42.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA   71 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~   71 (611)
                      +.+.-|+|.||||+|||++++.++..++.+++.++...+...+.+........+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~   92 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI   92 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHH
Confidence            345679999999999999999999999988888888777766666554444333

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.41  E-value=0.00019  Score=68.30  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ..+.|.+|+|+||+|+||||.+-+|+..+   +.....|+.|.+|
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            34579999999999999999888876543   3456778888875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00023  Score=67.91  Aligned_cols=42  Identities=21%  Similarity=0.397  Sum_probs=33.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      .+.+|.+|+|+||+|+||||.+-+|+..+   +.....|+.|.+|
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            35789999999999999999888876543   4556778888886

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=8.1e-05  Score=70.04  Aligned_cols=129  Identities=15%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-Ee---------------------ecchh----ccCCCCcHHHH----
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RI---------------------CQDTI----NKGKSGTKVQC----   67 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~-~I---------------------s~D~i----~~~~~~~~~~~----   67 (611)
                      ..+..|||+||   ||+|+.++|.+.++..|. .+                     +.+.+    .++.+.++...    
T Consensus         7 ~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~   83 (199)
T d1kjwa2           7 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL   83 (199)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCc
Confidence            34455777786   699999999998764331 11                     11111    11222111100    


Q ss_pred             ----HHHHHHHHHCCCcEEEecCCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHH
Q 007244           68 ----LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (611)
Q Consensus        68 ----~~~~~~~L~~Gk~VIID~tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~  142 (611)
                          ...+...+..|+.+|+|.      +.+.+..+ .... ...+||+.+|.-+.+.|+.+|..         .+++.+
T Consensus        84 YGt~~~~i~~~~~~gk~~lldi------d~~g~~~lk~~~~-~~i~IfI~pps~e~l~~l~kr~~---------~~~i~~  147 (199)
T d1kjwa2          84 YGTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHL-HPIAIFIRPRSLENVLEINKRIT---------EEQARK  147 (199)
T ss_dssp             EEEEHHHHHHHHHTTCEEEECC------CTTHHHHHHHTTC-CCEEEEECCSSHHHHHHHCTTSC---------HHHHHH
T ss_pred             cceeeeEEEehhcCCCcccccc------cchHHhhhhhhcc-ceeEEeeccccHHHHHhhhcccc---------HHHHHH
Confidence                267788899999999998      45555555 3333 34467776654444445555533         233333


Q ss_pred             HHHhhc-cCCCccCCccEEEEcCC
Q 007244          143 RMLQKK-ELPKLSEGFSRITLCQN  165 (611)
Q Consensus       143 rm~~~~-e~P~~~EgFd~V~vv~~  165 (611)
                      ++.+.. .+....+-||.++++++
T Consensus       148 r~~~~~~~e~~~~~~fd~vI~Ndd  171 (199)
T d1kjwa2         148 AFDRATKLEQEFTECFSAIVEGDS  171 (199)
T ss_dssp             HHHHHHHHHHHHGGGCSEEECCSS
T ss_pred             HHHHHHHHHHHhhccCCEEEECcC
Confidence            332221 11222345888887654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00036  Score=66.34  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=33.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      .+.|.+|+|+||+|+||||.+-+|+..+   +.....|+.|.+|
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            5679999999999999999988887543   4556778888886

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.30  E-value=0.00054  Score=64.85  Aligned_cols=41  Identities=27%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~   57 (611)
                      ...+.+|+|+||+|+||||.+-+|+..+   +.....++.|.+|
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            4557899999999999999888887543   4456678888875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.30  E-value=0.0003  Score=68.13  Aligned_cols=41  Identities=27%  Similarity=0.539  Sum_probs=32.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccC
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG   59 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~   59 (611)
                      ++.=|+|.||||+|||++|+.++++++.+++.++.-.+..+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g   79 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIG   79 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccccccccccccccccc
Confidence            35568999999999999999999999988877765333333

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00018  Score=68.22  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=43.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl   88 (611)
                      +.-++|.||||+||||+|+.+++.++..+..++.-.+     .........+.+.+..+..+++|....
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~iDe~~~   98 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI-----EKPGDLAAILANSLEEGDILFIDEIHR   98 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTC-----CSHHHHHHHHHTTCCTTCEEEEETGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcc-----ccchhhHHHHHhhccCCCeeeeecccc
Confidence            3447799999999999999999999877766654322     122223344445555666677877543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0001  Score=65.35  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +|.++|+||||||||+++|++.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.13  E-value=0.00086  Score=59.81  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      |+|+|||||||||+++.++..+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            89999999999999999998765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00056  Score=64.19  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      -++|++-|+.||||||+++.|++.+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            36899999999999999999998775

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.00061  Score=64.50  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhcc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D~i~~   58 (611)
                      .++|.+|+|+||+||||||.+-+|+..+   +.....|+.|.+|-
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   47 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA   47 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccc
Confidence            4678899999999999999888876543   45567888888864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.05  E-value=0.0028  Score=63.95  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .|.|=|+-||||||+++.|.+.+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            388999999999999999987654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.00022  Score=67.52  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      -++|.||||+||||+|+.++++++..+..++.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~   68 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSG   68 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcccccC
Confidence            47799999999999999999999977665553

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.93  E-value=0.00029  Score=70.47  Aligned_cols=39  Identities=15%  Similarity=0.436  Sum_probs=33.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      +|.-|+|+||||+|||.+|+.+++.++.++..++.-.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            456778999999999999999999999888888876664

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.91  E-value=0.00067  Score=68.38  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEec
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ++++.||||+|||.+|+.++.+.+  .++..++...+...+.+..+.....+.+..+....++||-
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DE  190 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS  190 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeeh
Confidence            455689999999999999999875  4566777777777777776665555544445555666676

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.0003  Score=66.86  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~   53 (611)
                      ..+..++|.||||+||||+|+.+++.++..+..++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~   85 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA   85 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcccc
Confidence            344578999999999999999999999866666654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.90  E-value=0.0051  Score=62.02  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ...|++=|+-||||||+++.|.+.++
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            46789999999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00052  Score=68.17  Aligned_cols=42  Identities=17%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEeecchhc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARICQDTIN   57 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~------~~~~~~Is~D~i~   57 (611)
                      ....|.+|-|.|++||||||++..|...+      ......|+.|++.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            45669999999999999999998876543      1235567777763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.73  E-value=0.00098  Score=67.41  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=23.2

Q ss_pred             CcEE-EEEEcCCCCcHHHHHHHHHHHcC
Q 007244           19 KQIL-VIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        19 ~p~L-IvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      |+.| |++=|+-||||||+++.|.+.+.
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4444 89999999999999999998765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00029  Score=62.45  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .|+|+|+||+||||+++++++.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00053  Score=64.42  Aligned_cols=100  Identities=13%  Similarity=0.073  Sum_probs=53.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCC-----eEEeecchhccCCCCcHHHHHHHHHHHHHC--------CCcEEEecCC-C
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARP-----WARICQDTINKGKSGTKVQCLTSASSALKK--------GKSVFLDRCN-L   88 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~-----~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~--------Gk~VIID~tn-l   88 (611)
                      ++|.||||+||||+|+.++++++..     +..++.-     ..................        .+.+|+|... +
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~  113 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS-----DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM  113 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT-----SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS
T ss_pred             EEEECCCCCCchhhHHHHHHHHhcccccccccccccc-----ccCCceehhhHHHHHHHhhccCCCcceEEEEEeccccc
Confidence            6789999999999999999875521     1112211     111111122222222221        2357888744 3


Q ss_pred             CHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        89 ~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .......++.. ........++....+...+...++.|-.
T Consensus       114 ~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~  153 (224)
T d1sxjb2         114 TAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA  153 (224)
T ss_dssp             CHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             chhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH
Confidence            44444444444 4444445566666666666666666653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.00092  Score=70.23  Aligned_cols=39  Identities=15%  Similarity=0.436  Sum_probs=34.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      .|.-|+|+||||||||.+|+.|++.++.||+.++.-.+-
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fT   86 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceee
Confidence            467899999999999999999999999999888876664

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.43  E-value=0.0012  Score=61.75  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=26.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQD   54 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~--~~~~~Is~D   54 (611)
                      .+|+++|++|||||||.++|.+.+.  .....|+.|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecC
Confidence            3799999999999999999987543  334556543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.41  E-value=0.001  Score=62.84  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee-cchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC-QDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is-~D~i   56 (611)
                      .+|.|+|..||||||+|+.|.+.+|  +.+++ .|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g--~~~i~~aD~i   36 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECCTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC--CeEEcccHHH
Confidence            4799999999999999999999888  77787 4554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.34  E-value=0.02  Score=53.55  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++|.|+||||||++++++..++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0017  Score=60.62  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++|.||||+||||+++.+++++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            66899999999999999998754

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.31  E-value=0.00089  Score=59.65  Aligned_cols=41  Identities=12%  Similarity=0.114  Sum_probs=31.8

Q ss_pred             CCCccccccCccCCCCCChHHHHHHHHHHHHHHHHhcCCeEEEEee
Q 007244          275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVD  320 (611)
Q Consensus       275 ~~~SiAfPaIStGi~gfP~~~aa~Iiv~tv~~f~~~~~~i~iV~vd  320 (611)
                      +..|||||+||||+||||.++++++|.+.+.    +. ++.++.+|
T Consensus       113 ~~~sIa~P~Ig~Gi~G~~w~~v~~ii~~~~~----~~-~i~v~vy~  153 (154)
T d2fg1a1         113 HKASVHMPRIGCGLAGGKWELMEQIIKEELI----TK-EIAVTVYD  153 (154)
T ss_dssp             HTCEEEECCTTCSTTCCCHHHHHHHHHHHTG----GG-TCCEEEEE
T ss_pred             cCcEEEeCcccCCCCCCCHHHHHHHHHHHhc----cC-CCeEEEEE
Confidence            5579999999999999999999999876653    22 35555544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.27  E-value=0.0042  Score=58.31  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .+.+++|.|++|+||||+++++++..+..+..++....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~   65 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF   65 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccc
Confidence            34578899999999999999999988876666654333

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.001  Score=59.41  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +|.++|.+||||||++++|...+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999987643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.01  E-value=0.0017  Score=60.97  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++|.||||+||||+|+.+++++.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999998753

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.99  E-value=0.0016  Score=66.63  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=31.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is   52 (611)
                      ..+++..++|.||||+|||++|+.+++.++..+..++
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            4456678999999999999999999999997665564

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0089  Score=55.65  Aligned_cols=108  Identities=11%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC------------------------eEEeecchhccCCCCcHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP------------------------WARICQDTINKGKSGTKVQCLTSA   71 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~------------------------~~~Is~D~i~~~~~~~~~~~~~~~   71 (611)
                      ....|.-++|.||||+||||+|+.+++.+...                        +..+..+  ........+++ ..+
T Consensus        20 ~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~i~~~~i-r~l   96 (207)
T d1a5ta2          20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE--KGKNTLGVDAV-REV   96 (207)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC--TTCSSBCHHHH-HHH
T ss_pred             cCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhh--hcccccccchh-hHH
Confidence            44557789999999999999999999865210                        0000000  00111122222 223


Q ss_pred             HHHHHC----C--CcEEEecCC-CCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           72 SSALKK----G--KSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        72 ~~~L~~----G--k~VIID~tn-l~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      .+.+..    |  +.+|||... ++......++++ .+....+.+|++......+...++.|-
T Consensus        97 ~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc  159 (207)
T d1a5ta2          97 TEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC  159 (207)
T ss_dssp             HHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             hhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhccee
Confidence            333321    1  247777743 455666677777 777666777777777766777776674

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0033  Score=62.71  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=33.1

Q ss_pred             CCc-EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           18 WKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p-~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      .+| ..++|+||||+|||.+|+.|++.++.++++++.-.+.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~   89 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM   89 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeEecccccc
Confidence            344 3788999999999999999999999888888865553

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.84  E-value=0.0023  Score=60.18  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=24.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..|..++|.||||+||||+++.+++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4566789999999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.66  E-value=0.0019  Score=61.23  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +.++++.||||+||||+++.+++.+
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHHH
Confidence            3456678999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0099  Score=58.05  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=40.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC----------CCeEEeecchhc--cCCCCcHHHHHHHHHHHHHCCCc-E-EEec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTIN--KGKSGTKVQCLTSASSALKKGKS-V-FLDR   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~----------~~~~~Is~D~i~--~~~~~~~~~~~~~~~~~L~~Gk~-V-IID~   85 (611)
                      ..-++|+|+||+|||++++.++....          ..+..++...+-  ....+.+++.+..+...+....+ + +||.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDe  118 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE  118 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETT
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEecc
Confidence            34678999999999999999887521          122333333332  24567787766666666655444 3 3455

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.003  Score=56.54  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=23.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...+++|.|+|||||||||.+++...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999998753

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=95.50  E-value=0.041  Score=46.20  Aligned_cols=103  Identities=20%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhccCCCCcHHHHHHHHHHHHHCCCcEEEecCCCCH----------
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER----------   90 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~Gk~VIID~tnl~~----------   90 (611)
                      ++|+|-||-.+=|||+|.++.+++..+.  |-...+.-...+. +.+ -.-...|....+||||...+..          
T Consensus         1 tliilegpdccfkstvaaklskelkypi--ikgssfelaksgn-ekl-fehfnkladednviidrfvysnlvyakkfkdy   76 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELKYPI--IKGSSFELAKSGN-EKL-FEHFNKLADEDNVIIDRFVYSNLVYAKKFKDY   76 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHTCCE--EECCCHHHHHHCH-HHH-HHHHHHHTTCCSEEEESCHHHHHHHTTTBSSC
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhcCce--ecCchhhhhhccC-HHH-HHHHHhhccccceeeehhhhhhhHHHhhcccc
Confidence            4899999999999999999999988443  4322221000010 111 2233557778899999832211          


Q ss_pred             ----HHHHHHHHhCCCCCeEEEEEEeCCHHHHHHHHHhcccc
Q 007244           91 ----EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (611)
Q Consensus        91 ----~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~  128 (611)
                          +...+++.- +-.....++|+..+..++.+|++-|+..
T Consensus        77 silterqlrfied-kikakakvvylhadpsvikkrlrvrgde  117 (164)
T d2axpa1          77 SILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVRGDE  117 (164)
T ss_dssp             CCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHHTCS
T ss_pred             eehhHHHHHHHHH-HhhhheeEEEEecChHHHHHHhcccccc
Confidence                111223221 1123346899999999999999999763

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0032  Score=58.72  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++|.||||+||||+++.+++++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0042  Score=58.90  Aligned_cols=126  Identities=14%  Similarity=0.156  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec------------------chhc--cCCCCcHHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ------------------DTIN--KGKSGTKVQCLTSASSAL   75 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~------------------D~i~--~~~~~~~~~~~~~~~~~L   75 (611)
                      ....|..++|.||||+||||+|+.+++.+..... .+.                  |.+.  .......    +.+++.+
T Consensus        30 ~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i----~~ir~~~  104 (239)
T d1njfa_          30 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV----EDTRDLL  104 (239)
T ss_dssp             TTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTC-SCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSH----HHHHHHH
T ss_pred             cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccc-cccCccccchHHHHHHcCCCCeEEEecchhcCCH----HHHHHHH
Confidence            3445777899999999999999999887542110 000                  0000  0000111    1222222


Q ss_pred             HC-------C--CcEEEecC-CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhcccccCCCCCCCHHHHHHHH
Q 007244           76 KK-------G--KSVFLDRC-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (611)
Q Consensus        76 ~~-------G--k~VIID~t-nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~~~g~~~~~vpeevi~rm  144 (611)
                      ..       |  +.+|||.. .++......+++. .+......+|.+.-..+.+...+..|-..-. .....++++..++
T Consensus       105 ~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~-~~~~~~~~i~~~l  183 (239)
T d1njfa_         105 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH-LKALDVEQIRHQL  183 (239)
T ss_dssp             HSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE-CCCCCHHHHHHHH
T ss_pred             HHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccc-cccCcHHHhhhHH
Confidence            22       2  24788863 3455555566666 5555556666666666667777777754211 1223345554444


Q ss_pred             Hhh
Q 007244          145 LQK  147 (611)
Q Consensus       145 ~~~  147 (611)
                      ...
T Consensus       184 ~~i  186 (239)
T d1njfa_         184 EHI  186 (239)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0031  Score=59.40  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++|.||||+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            37799999999999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.017  Score=51.60  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .|+|+|.||+|||||.+++...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999854

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.09  E-value=0.0056  Score=57.18  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=23.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...+++|.|+|||||||||-+++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456899999999999999999988654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.08  E-value=0.0057  Score=52.76  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||.+++...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.88  E-value=0.0095  Score=55.60  Aligned_cols=27  Identities=22%  Similarity=0.593  Sum_probs=23.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++..++++.|+||||||+||.+++...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999988763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.86  E-value=0.063  Score=53.39  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEee-cc--hhc--cCCC------CcHHHHHHHHHHHHHCCCcEEEecCCCCHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC-QD--TIN--KGKS------GTKVQCLTSASSALKKGKSVFLDRCNLERE   91 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~~~~~~Is-~D--~i~--~~~~------~~~~~~~~~~~~~L~~Gk~VIID~tnl~~~   91 (611)
                      |+++|++||||||+.+.|....+.....+. .|  .+.  ....      .......+.++.+|+..-+.|+=+--...+
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEiR~~e  248 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSE  248 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCCCSTH
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCccCchh
Confidence            788999999999999999987764322222 11  111  0000      000123366778888887766656455555


Q ss_pred             HHHHHHHh--CCCCCeEEEEEEeCCHHHHHHHHHhcc
Q 007244           92 QRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (611)
Q Consensus        92 ~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~Rl~~R~  126 (611)
                      ... +++.  ..+..-+..+.-+ +......|+..-.
T Consensus       249 a~~-~l~a~~tGh~g~~tT~Ha~-s~~~a~~Rl~~l~  283 (323)
T d1g6oa_         249 AYD-FYNVLCSGHKGTLTTLHAG-SSEEAFIRLANMS  283 (323)
T ss_dssp             HHH-HHHHHHTTCSCEEEEECCS-SHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHhcCCcEEEEECCC-CHHHHHHHHHHhc
Confidence            444 4554  4443334444433 5566788886543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.0047  Score=57.06  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +...+++|.|+|||||||||.+++..
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            45679999999999999999998643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.61  E-value=0.013  Score=52.88  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=25.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++.+|+|.|.-|||||||++.+++.++
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            4567999999999999999999999987

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.028  Score=52.27  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=37.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC----------CCeEEeecchhccC--CCCcHHHHHHHHHHHH-HCCCc--EEEec
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINKG--KSGTKVQCLTSASSAL-KKGKS--VFLDR   85 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~----------~~~~~Is~D~i~~~--~~~~~~~~~~~~~~~L-~~Gk~--VIID~   85 (611)
                      .-++|+|+||+|||++++.++....          ..+..++...+-.+  ..+.+++.+..+...+ ....+  .+||.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDe  123 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE  123 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEET
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcch
Confidence            4579999999999999999887531          22333443343222  3345555444444443 44333  45666

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.011  Score=54.76  Aligned_cols=27  Identities=11%  Similarity=0.108  Sum_probs=23.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -++..++++.|+||||||+||.+++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            456689999999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.49  E-value=0.014  Score=59.30  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i~   57 (611)
                      .++.-++|+||+|+|||-+|+.|++.++.++..++.-.+.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~  105 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLT  105 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhcccceeehhhhhcc
Confidence            4566799999999999999999999888888777765553

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.011  Score=50.67  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|+||+|||||.+++...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.29  E-value=0.009  Score=57.80  Aligned_cols=28  Identities=36%  Similarity=0.367  Sum_probs=23.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++...+.|+|++||||||+++.+..-+.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            4567899999999999999999876543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.033  Score=47.85  Aligned_cols=27  Identities=0%  Similarity=0.048  Sum_probs=23.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ++...|+|.|.+||||||+|+.|...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999997765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.011  Score=56.53  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+||+||||||+.+.+..-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            566799999999999999999886543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.16  E-value=0.011  Score=56.70  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -++...+.++|++||||||+++.+..-+
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3556789999999999999999987644

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.037  Score=53.55  Aligned_cols=36  Identities=25%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      +...++.|.|+|||||||+|-+++...   +...+.|+.
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            355899999999999999999987543   334445554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.16  E-value=0.01  Score=56.66  Aligned_cols=27  Identities=30%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -.+..++.|+|++||||||+.+.+..-
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCC
Confidence            346678999999999999999977653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.0099  Score=57.12  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++...+.++|++||||||+++.+..-+.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4557899999999999999999887554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.012  Score=56.79  Aligned_cols=28  Identities=29%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++..++.|+|++||||||+++.+..-+.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            5567899999999999999999876544

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.05  E-value=0.013  Score=53.92  Aligned_cols=27  Identities=22%  Similarity=0.213  Sum_probs=23.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +...+++|.|+||+|||+|+.+++...
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999998654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.011  Score=56.76  Aligned_cols=26  Identities=31%  Similarity=0.285  Sum_probs=22.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .+..++.|+|++||||||+++.+..-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            45678999999999999999988654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.04  E-value=0.015  Score=53.21  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .-|+|+|+||+||||+|-.+.++ +  +..|+.|..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~-g--~~lv~DD~~   47 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR-G--HRLIADDRV   47 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT-T--CEEEEEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-C--CeEEecCeE
Confidence            45889999999999999998875 4  455665544

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.01  E-value=0.014  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      =|+|+|.||+|||||.+++...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.016  Score=58.01  Aligned_cols=29  Identities=31%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ..+....|-++|+||||||||..+|...+
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            34678899999999999999999987643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.90  E-value=0.014  Score=52.78  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .|+|+|.||+|||||.+.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            488999999999999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.87  E-value=0.018  Score=57.50  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=24.5

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+....|-++|+||+|||||..++.+.
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            3466789999999999999999998865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.86  E-value=0.014  Score=51.48  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      .=|+|+|.||||||||.+++...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            44889999999999999998753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.85  E-value=0.013  Score=56.34  Aligned_cols=27  Identities=22%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+||+||||||+++.+..-.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            346789999999999999999987643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.81  E-value=0.012  Score=56.20  Aligned_cols=28  Identities=21%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+||+||||||+.+.++.-..
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            4567899999999999999999976543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.79  E-value=0.016  Score=55.68  Aligned_cols=28  Identities=18%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+||+||||||+.+.+..-..
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4557899999999999999998876443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.019  Score=54.03  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEee
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARIC   52 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~-~~~~~Is   52 (611)
                      +++++|..|||||||.+++.+... ..+.+|.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~~~~riaVI~   36 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE   36 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence            689999999999999999988643 3454453

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.016  Score=56.76  Aligned_cols=28  Identities=21%  Similarity=0.365  Sum_probs=23.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++..++.|+|++||||||+.+.+...+.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            4567899999999999999999986554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.63  E-value=0.016  Score=51.26  Aligned_cols=21  Identities=38%  Similarity=0.748  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~   42 (611)
                      -|+|+|.||+|||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999964

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.61  E-value=0.017  Score=52.98  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=25.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      .-|+|+|+||+||||+|-.+.++ +  +..|+.|..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~-G--~~lvaDD~v   48 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK-N--HLFVGDDAI   48 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-T--CEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-C--CceecCCeE
Confidence            44889999999999999998765 4  455665544

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.58  E-value=0.015  Score=53.19  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      +...+++|.|+||+|||+||.+++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4668999999999999999988653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.55  E-value=0.016  Score=50.77  Aligned_cols=20  Identities=25%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|+||+|||||.+++..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            88999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.53  E-value=0.011  Score=54.99  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++..++.|+||+||||||+.+.++.-+.
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            3456899999999999999999976543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.53  E-value=0.02  Score=50.22  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ++..=|+|+|.||+|||||.+++..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4445588999999999999999854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.49  E-value=0.017  Score=51.30  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.||+|||||.++|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999975

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.48  E-value=0.022  Score=51.71  Aligned_cols=34  Identities=21%  Similarity=0.415  Sum_probs=26.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~Is~D~i   56 (611)
                      ..-|+|+|+||+||||++-.+.++ +  +..|+.|..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g--~~li~DD~~   48 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-G--HRLVADDNV   48 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-C--CeEEeCCeE
Confidence            345899999999999999998876 4  455665544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.43  E-value=0.018  Score=55.18  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .++.|+||+||||||+.+.+..-..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            4677899999999999999986543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.40  E-value=0.017  Score=56.03  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=23.6

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      -.+..++.|+|++||||||+++.+..-.
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3566799999999999999999987543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.36  E-value=0.02  Score=51.87  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -|+|+|+||+|||||.++|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4788999999999999999865

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.29  E-value=0.11  Score=47.75  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCC------CeEEeecchhccCCCCcHHHHHHHHHHHHHC----C--CcEEEe
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR------PWARICQDTINKGKSGTKVQCLTSASSALKK----G--KSVFLD   84 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~------~~~~Is~D~i~~~~~~~~~~~~~~~~~~L~~----G--k~VIID   84 (611)
                      ...+.-+++.|+||+||||+|..+++....      .+..+..+    +....-+++.+ +.+.+..    |  +.+|||
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~----~~~I~Id~IR~-i~~~~~~~~~~~~~KviIId   86 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIRT-IKDFLNYSPELYTRKYVIVH   86 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHHH-HHHHHTSCCSSSSSEEEEET
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC----cCCCCHHHHHH-HHHHHhhCcccCCCEEEEEe
Confidence            345778999999999999999998875421      13233221    22222233333 3344432    2  357776


Q ss_pred             cC-CCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhccc
Q 007244           85 RC-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (611)
Q Consensus        85 ~t-nl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R~~  127 (611)
                      .. .++......+++. .+.+....++++-...+.+..=++.|-.
T Consensus        87 ~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~  131 (198)
T d2gnoa2          87 DCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVF  131 (198)
T ss_dssp             TGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             CccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceE
Confidence            64 4666667777777 7766666677776655555555555543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.25  E-value=0.013  Score=56.29  Aligned_cols=27  Identities=22%  Similarity=0.291  Sum_probs=23.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .+..++.|+||+||||||+.+.+..-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            446789999999999999999987643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.022  Score=50.02  Aligned_cols=20  Identities=25%  Similarity=0.516  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.||+|||||.+++..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999886

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.20  E-value=0.027  Score=49.69  Aligned_cols=26  Identities=15%  Similarity=0.419  Sum_probs=21.8

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      +.+..=|+|+|.||+|||||.+++..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            34556799999999999999999854

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.18  E-value=0.013  Score=58.04  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      -|+|.|+||+||||+|+.+..-++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCC
Confidence            489999999999999999988664

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.11  E-value=0.12  Score=46.01  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~   42 (611)
                      -|.++|.|.+|||||.++|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999975

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.10  E-value=0.023  Score=56.42  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=28.4

Q ss_pred             CCCcE-EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           17 KWKQI-LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        17 ~~~p~-LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      +.+|. .++|+||||+|||.+|+.|++.+   ...+..++.
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            34554 77899999999999999999875   345656654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.99  E-value=0.11  Score=50.34  Aligned_cols=38  Identities=21%  Similarity=0.162  Sum_probs=27.7

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      .-+...++.+.|+|||||||+|-.++...   +...+.|+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            34567899999999999999998876543   333444554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.95  E-value=0.032  Score=54.03  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=22.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ....+|.|.|+.|.||||+|+++.+.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.90  E-value=0.026  Score=49.88  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999999764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.025  Score=49.07  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.|++|||||.++|...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.026  Score=50.04  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||++++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.81  E-value=0.026  Score=51.42  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      -|+|+|+||+||||+.+++...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.74  E-value=0.016  Score=55.99  Aligned_cols=28  Identities=36%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++...+.++|++||||||+++.+..-+.
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            4557899999999999999998876443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.68  E-value=0.029  Score=49.20  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|++|+|||||.+++...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            778999999999999999764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.038  Score=48.91  Aligned_cols=21  Identities=33%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||.+++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.03  Score=49.56  Aligned_cols=21  Identities=24%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||++++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.028  Score=50.31  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.||+|||||++++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.56  E-value=0.022  Score=54.45  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=23.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ++..++.|+||+||||||+.+.+..-..
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4567999999999999999999876544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.031  Score=49.37  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||.+++...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.032  Score=49.30  Aligned_cols=21  Identities=19%  Similarity=0.627  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.43  E-value=0.11  Score=50.29  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=27.3

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~   53 (611)
                      +.+.++.+.|+|||||||+|-.++...   +...+.|+.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            456799999999999999999876543   344555654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.032  Score=49.52  Aligned_cols=21  Identities=33%  Similarity=0.692  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||++++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999998763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.39  E-value=0.033  Score=53.02  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=26.7

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEeec
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~----~~~~~~~Is~   53 (611)
                      .+..+++|.|+||+|||||+..++..    .+.+...++.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            34579999999999999999988743    2344445553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.37  E-value=0.034  Score=48.81  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+++|.||+|||||.+++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.037  Score=48.60  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||++++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.12  E-value=0.027  Score=54.24  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+..++.|+||+||||||+++.+..-+.
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            4567899999999999999999876544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.11  E-value=0.038  Score=48.23  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.073  Score=50.62  Aligned_cols=39  Identities=13%  Similarity=0.125  Sum_probs=29.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      .+++|++|+++|--|+||||++-.++..+   |.....|+.|
T Consensus         4 ~~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           4 LQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             GSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            46789999999999999999888876543   3344455555

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.04  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.||+|||||.+++...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.042  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||++++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.026  Score=53.59  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .+..++.|+|++||||||+.+.+..
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4567899999999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.81  E-value=0.042  Score=49.08  Aligned_cols=21  Identities=29%  Similarity=0.649  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||++++...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999763

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.047  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      +-.|+|+|.|++|||||.++|...
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            446899999999999999999753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=0.037  Score=52.79  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=24.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....++-|+||+||||||+.+.+.....
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5567999999999999999999887554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.044  Score=48.15  Aligned_cols=20  Identities=20%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||.+++..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999876

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.044  Score=48.06  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.72  E-value=0.03  Score=49.97  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~   41 (611)
                      +-.=|+|+|.||+|||||.+++.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999999874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.046  Score=48.15  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||++++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=0.045  Score=49.51  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999999864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.047  Score=47.90  Aligned_cols=21  Identities=33%  Similarity=0.670  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.048  Score=47.56  Aligned_cols=20  Identities=20%  Similarity=0.516  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||++++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.47  E-value=0.13  Score=52.25  Aligned_cols=63  Identities=17%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC----------CCeEEeecchhcc--CCCCcHHHHHHHHHHHHHC--CCc-EEEec
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINK--GKSGTKVQCLTSASSALKK--GKS-VFLDR   85 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~~----------~~~~~Is~D~i~~--~~~~~~~~~~~~~~~~L~~--Gk~-VIID~   85 (611)
                      ++|+|+||+|||++++.|+.+.-          .....++...+-.  ...+.+++.+..+...+..  |.. .+||.
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide  123 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE  123 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEecc
Confidence            58889999999999988776421          1123333333322  2345666655555444533  323 45666

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.047  Score=47.99  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||.+++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.05  Score=47.96  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||+|.+++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.32  E-value=0.052  Score=55.53  Aligned_cols=108  Identities=16%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEee-cchhc---cCCC------CcHHHHHHHHHHHHHCCCcEEEec
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARP-WARIC-QDTIN---KGKS------GTKVQCLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~~~-~~~Is-~D~i~---~~~~------~~~~~~~~~~~~~L~~Gk~VIID~   85 (611)
                      ....-+|+++||+||||||....+....+.. ..+++ .|=+.   .+..      .....+...++.+|+..-+||+=+
T Consensus       155 ~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~ig  234 (401)
T d1p9ra_         155 KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVG  234 (401)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEES
T ss_pred             hhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEec
Confidence            3455799999999999999999998876532 11122 11111   0100      001124477788899998988878


Q ss_pred             CCCCHHHHHHHHHh-CCCCCeEEEEEEeCCHHHHHHHHHhc
Q 007244           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (611)
Q Consensus        86 tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~Rl~~R  125 (611)
                      --...+-....++. ..-+.-+..+.- .+.-....|+..-
T Consensus       235 EiRd~~ta~~a~~aa~tGhlV~tTlHa-~~a~~~~~Rl~~~  274 (401)
T d1p9ra_         235 EIRDLETAQIAVQASLTGHLVMSTLHT-NTAVGAVTRLRDM  274 (401)
T ss_dssp             CCCSHHHHHHHHHHHHTTCEEEEEECC-SSSHHHHHHHHHH
T ss_pred             CcCChHHHHHHHHHHhcCCeEEEEecc-CchHhhhhhhhhc
Confidence            66666666666555 333322222222 2334566777654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.31  E-value=0.052  Score=47.65  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.052  Score=48.10  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      =|+|+|.+|+|||||.+++...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.053  Score=48.14  Aligned_cols=20  Identities=25%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||.+++..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.056  Score=47.31  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~   42 (611)
                      =|+|+|.+|+|||||.+++..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.01  E-value=0.04  Score=49.08  Aligned_cols=20  Identities=45%  Similarity=0.524  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |.|+|+|++|||||.++|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999854

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.99  E-value=0.052  Score=47.94  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      .+..=|+|+|+||+|||||.+++..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            3344588999999999999999864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.055  Score=47.67  Aligned_cols=20  Identities=40%  Similarity=0.698  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||++++..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.059  Score=47.74  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||..++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.055  Score=51.16  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..+.+|.|+||+|||||+-.++..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            468899999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.89  E-value=0.06  Score=47.46  Aligned_cols=20  Identities=50%  Similarity=0.698  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||.+++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.88  E-value=0.02  Score=49.61  Aligned_cols=21  Identities=33%  Similarity=0.721  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.|++|||||.++|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.68  E-value=0.26  Score=41.44  Aligned_cols=33  Identities=18%  Similarity=0.117  Sum_probs=25.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~~~~~~~~~I   51 (611)
                      .-...+|.+|+|||||+++-.+....+....++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~   39 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVL   39 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEE
Confidence            346789999999999999987777666444333

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.59  E-value=0.074  Score=50.82  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=23.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...+.-|+|+|.||+||||+++.++.+
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            345677999999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.067  Score=46.85  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||+|.+++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.53  E-value=0.064  Score=47.59  Aligned_cols=24  Identities=38%  Similarity=0.630  Sum_probs=20.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ..-|.++|.+|+|||||.++|...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            355889999999999999999754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.53  E-value=0.068  Score=46.89  Aligned_cols=21  Identities=19%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||..++...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.48  E-value=0.061  Score=48.07  Aligned_cols=18  Identities=44%  Similarity=0.802  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHV   40 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L   40 (611)
                      |+|+|.+|+|||||..++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999999998

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.41  E-value=0.064  Score=50.79  Aligned_cols=26  Identities=23%  Similarity=0.334  Sum_probs=21.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ....+|+|+||+||||+.++|.....
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhh
Confidence            34679999999999999999976543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.09  Score=46.78  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ++..=|+|+|.+|+|||||.+++...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            34456899999999999999998864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.053  Score=47.50  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ...-|+|+|.|++|||||.++|..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            345689999999999999999854

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.11  E-value=0.044  Score=48.49  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=8.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||.+++..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.00  E-value=0.052  Score=48.17  Aligned_cols=20  Identities=40%  Similarity=0.625  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |.|+|.|++||||+.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.077  Score=46.92  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~   42 (611)
                      |+|+|.+|+|||||++++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.89  E-value=0.082  Score=46.59  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778999999999999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.087  Score=47.31  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||+|.+++...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.057  Score=47.74  Aligned_cols=21  Identities=33%  Similarity=0.754  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999987653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.088  Score=47.08  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||||.+++...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999998763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.53  E-value=0.09  Score=46.91  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|.+|+|||+|.+++...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.22  Score=46.92  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVM   41 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~   41 (611)
                      +...+++|+||.+|||||+.+.+.
T Consensus        39 ~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          39 PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEeccCchhhHHHHHHHH
Confidence            445689999999999999999964

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.29  E-value=0.088  Score=48.81  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|++|+||||+.+++...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            799999999999999998654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.94  E-value=0.09  Score=48.95  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=26.1

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..++..-++|.|||++|||+||..+.+-++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            356667899999999999999999998876

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.93  E-value=0.13  Score=49.55  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             cCCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        16 ~~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ..++...++|.|||++|||||+..+.+-++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            446677899999999999999999999886

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.11  Score=52.20  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHH
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ..+.+|.|+||+||||+..++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            35899999999999998876544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.04  E-value=0.12  Score=49.69  Aligned_cols=17  Identities=29%  Similarity=0.675  Sum_probs=13.7

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEH   39 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~   39 (611)
                      +++.|+|||||||++-+
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            56779999999987644

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.93  E-value=0.13  Score=45.39  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 007244           23 VIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~~   44 (611)
                      |+|+|.+|+||||+..++....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999997653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=87.90  E-value=0.11  Score=49.48  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEH   39 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~   39 (611)
                      +++.|+|||||||++-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            45669999999987543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.72  E-value=0.061  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      ....+|+|+||+||||+.++|....
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            3456799999999999999997553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.47  E-value=0.15  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      =|+++|.+|+|||||.+++...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.99  E-value=0.17  Score=46.59  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        21 ~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      .-|.++|-+++|||||..+|....
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            459999999999999999997543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.70  E-value=0.18  Score=44.37  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 007244           23 VIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        23 IvLvG~PGSGKST~A~~L~~~   43 (611)
                      |+|+|..|+|||||.+++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999998654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=86.29  E-value=0.047  Score=47.78  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +.+.+|+|+.||||||+..++.--+
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4477899999999999999987554

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.00  E-value=0.16  Score=48.52  Aligned_cols=26  Identities=27%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +.+-+|+|+.||||||+.+++.--++
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45889999999999999998854443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.60  E-value=0.39  Score=45.33  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      .+.|  |+|.|++|+||+++|+.+.....
T Consensus        22 ~~~p--vlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          22 AECP--VLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCSC--EEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCC--EEEECCCCcCHHHHHHHHHHhcC
Confidence            3445  67789999999999999876543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.34  E-value=0.41  Score=44.95  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is~D   54 (611)
                      .+...||+++|-=|+||||++-.|+..+   +.....|+.|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4667899999999999999877765532   3445556665

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.01  E-value=0.21  Score=45.49  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      ||+++|...||||.||++++...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            589999999999999999976544

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=1.6  Score=37.17  Aligned_cols=94  Identities=18%  Similarity=0.083  Sum_probs=45.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEee--cchhccCCCCcHHH---------HHHHHHHHHHCCCcEEEec
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC--QDTINKGKSGTKVQ---------CLTSASSALKKGKSVFLDR   85 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~---~~~~~~Is--~D~i~~~~~~~~~~---------~~~~~~~~L~~Gk~VIID~   85 (611)
                      ..|-+++||+.|||||-.-+.+..+   +.....+.  .|.-..+.......         ........+..-..|.||-
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~I~IDE   81 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE   81 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC--------------CEEESSGGGGHHHHHTCSEEEESS
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCcceeeecCCCcceeeeeechhhhhhhhcccceEEeeh
Confidence            5688999999999999766655443   33344443  12211111110000         0011123344455677777


Q ss_pred             CCCCHHHHHHHHHh-CCCCCeEEEEEEeCC
Q 007244           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLP  114 (611)
Q Consensus        86 tnl~~~~R~~~~~l-~~~~~~v~vV~Ld~p  114 (611)
                      .-+-. +...+... ...+..|.+.=|+.+
T Consensus        82 aQFf~-dl~~~~~~~~~~~~~Viv~GLd~D  110 (133)
T d1xbta1          82 GQFFP-DIVEFCEAMANAGKTVIVAALDGT  110 (133)
T ss_dssp             GGGCT-THHHHHHHHHHTTCEEEEECCSBC
T ss_pred             hHHHH-HHHHHHHHHHhcCCcEEEEEeccc
Confidence            54443 34445555 445665555545543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.19  E-value=0.2  Score=41.40  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=16.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHH
Q 007244           19 KQILVIMVGAPGSGKSTFCE   38 (611)
Q Consensus        19 ~p~LIvLvG~PGSGKST~A~   38 (611)
                      +...++|.++||||||+.+-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHH
T ss_pred             cCCcEEEEcCCCCChhHHHH
Confidence            45678999999999997664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.45  E-value=0.35  Score=47.69  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 007244           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (611)
Q Consensus        20 p~LIvLvG~PGSGKST~A~~L~~~~~   45 (611)
                      +.+-+++|+.||||||+..++.=-++
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999854343

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.41  E-value=0.44  Score=44.01  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 007244           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (611)
Q Consensus        22 LIvLvG~PGSGKST~A~~L~~~~   44 (611)
                      +|.++|-|.+|||||.++|....
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            48899999999999999998753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.07  E-value=0.43  Score=48.36  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.1

Q ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHH
Q 007244           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (611)
Q Consensus        18 ~~p~LIvLvG~PGSGKST~A~~L~~   42 (611)
                      ..|.-|.++|.||+|||||.+.|..
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4567799999999999999999974

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=80.93  E-value=0.5  Score=45.06  Aligned_cols=27  Identities=30%  Similarity=0.551  Sum_probs=23.4

Q ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHH
Q 007244           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (611)
Q Consensus        17 ~~~p~LIvLvG~PGSGKST~A~~L~~~   43 (611)
                      ...+.-|+++|.|.+||||+.+.|...
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCceEEEEEecCccchhhhhhhhhcc
Confidence            345677999999999999999999864