Citrus Sinensis ID: 007315

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
MFGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT
cEEEEEcccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccEEEccccccccEEEEccEEEEcccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccEEEEcccccEEEEEEccEEEEEEEccccccEEEEEEEEEccccccEEEEEEEcccccccccccccccccEEccEEEcccccccEEccccccEEEccccHHHccccccccccccccccccccccccccEEEEEEEEcccccccEEEEccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEEcccccccEEEEEEEc
ccccEEEEccccEEEEccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHccccccEEEEEcccccccEEEcccccccccccccccccccEcccccHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEccccccccHHccccccccccHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEcccccEEEEEEEccccccEEEEEcccEEEccccEEEEccccccEEEEEEEEEccccEEEEEccccccccEEEcccccccccccccccccHHHHHccccccccEEEEEEEEEEccccccccccccEEEEEEccccEEEEEEcccEEEEccccccccEEEEEccEEEcccccEEEEEEEEcccccccccHHccccccccEEEEEEcccccEEccccccEEEEEcccccccEEcccccccEEEEccccccccccEEEEEEEEccccccccEEEEcccccccEEEEEccccccccccEcccccccccccccccccHHccccccccccEEEEccHHHccccccEEEEEEEcccccccEEEEEEEc
mfglcfcfrgfpvwlkyvpgiefrtdngpfkAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIenefgpvewdigapgkAYAKWAAQMAVGLntgvpwvmckqddapdpvintcngfycekfvpnqnykpkmwteAWTGWFTefgsavptrpaedLVFSVARFIQSGGSFINYYMyhggtnfgrtsggfvatsydydapideygllnepkwghlRDLHKAIKlcepalvsvdptvkslgknqeahvfnsksgkcaAFLANYDTTFSAKvsfgnaqydlppwsisvlpdcktavfntarvgvqssqkkfvpVINAFSWQSYIEEtasstddntftkdglwEQVYLTADASDYLWYmtdvnidsnegflkngqdpLLTIWSAGHALQVFINgqlsgtvygslenpkltfsknvklrpgvnkiSLLSTsvglpnvgthfekwnagvlgpvtlkglnegtrdiskqKWTYKIGLKGEALSLhtvsgsssvewaqgaslaqkqpmtwykttfnvppgndplaldmgamgKGMVWINGqsigrhwpgyigngncggcnyagtytekkcrtycgkpsqrwyhvprswlkpsgnLLVVFEewggephwISLLKRTT
mfglcfcfRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARvgvqssqkkfvPVINAFSWQSYIEETasstddntftkDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKltfsknvklrpgvNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKglnegtrdiskqkWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPsqrwyhvprswlkPSGNLLVVFEewggephwisllkrtt
MFGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPgyigngncggcnyagTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT
*FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLL****
MFGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSG************AQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR**
MFGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT
MFGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT
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MFGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query608 2.2.26 [Sep-21-2011]
P48981731 Beta-galactosidase OS=Mal N/A no 0.986 0.820 0.785 0.0
P48980 835 Beta-galactosidase OS=Sol N/A no 0.983 0.716 0.735 0.0
Q9SCV0728 Beta-galactosidase 12 OS= yes no 0.983 0.821 0.704 0.0
P45582 832 Beta-galactosidase OS=Asp N/A no 0.976 0.713 0.722 0.0
Q9SCW1 847 Beta-galactosidase 1 OS=A no no 0.983 0.706 0.715 0.0
Q9LFA6727 Beta-galactosidase 2 OS=A no no 0.985 0.823 0.681 0.0
Q9SCV8724 Beta-galactosidase 4 OS=A no no 0.983 0.825 0.688 0.0
Q8W0A1 827 Beta-galactosidase 2 OS=O yes no 0.978 0.719 0.680 0.0
Q00662731 Putative beta-galactosida N/A no 0.981 0.816 0.673 0.0
Q6Z6K4729 Beta-galactosidase 4 OS=O no no 0.975 0.813 0.671 0.0
>sp|P48981|BGAL_MALDO Beta-galactosidase OS=Malus domestica PE=1 SV=1 Back     alignment and function desciption
 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/602 (78%), Positives = 531/602 (88%), Gaps = 2/602 (0%)

Query: 8   FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
           F GFPVWLKYVPGI FRTDN PFKAAM KFTEKIVSMMKAEKLFQTQGGPIILSQIENEF
Sbjct: 124 FGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 183

Query: 68  GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQN 127
           GPVEW+IGAPGKAY KWAAQMAVGL+TGVPW+MCKQ+DAPDPVI+TCNGFYCE F PN++
Sbjct: 184 GPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWIMCKQEDAPDPVIDTCNGFYCENFKPNKD 243

Query: 128 YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSG 187
           YKPKMWTE WTGW+TEFG AVPTRPAED+ FSVARFIQSGGSF+NYYMYHGGTNFGRT+G
Sbjct: 244 YKPKMWTEVWTGWYTEFGGAVPTRPAEDVAFSVARFIQSGGSFLNYYMYHGGTNFGRTAG 303

Query: 188 G-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHV 246
           G F+ATSYDYDAP+DEYGL  EPKWGHLRDLHKAIK CE ALVSVDP+V  LG NQEAHV
Sbjct: 304 GPFMATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKSCESALVSVDPSVTKLGSNQEAHV 363

Query: 247 FNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQK 306
           F S+S  CAAFLANYD  +S KVSFG  QYDLPPWSIS+LPDCKT V+NTA+VG QSSQ 
Sbjct: 364 FKSES-DCAAFLANYDAKYSVKVSFGGGQYDLPPWSISILPDCKTEVYNTAKVGSQSSQV 422

Query: 307 KFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGF 366
           +  PV + F WQS+IEET SS + +T T DGL+EQ+ +T D +DYLWYMTD+ I S+E F
Sbjct: 423 QMTPVHSGFPWQSFIEETTSSDETDTTTLDGLYEQINITRDTTDYLWYMTDITIGSDEAF 482

Query: 367 LKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTS 426
           LKNG+ PLLTI+SAGHAL VFINGQLSGTVYGSLENPKL+FS+NV LR G+NK++LLS S
Sbjct: 483 LKNGKSPLLTIFSAGHALNVFINGQLSGTVYGSLENPKLSFSQNVNLRSGINKLALLSIS 542

Query: 427 VGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSV 486
           VGLPNVGTHFE WNAGVLGP+TLKGLN GT D+S  KWTYK GLKGEAL LHTV+GSSSV
Sbjct: 543 VGLPNVGTHFETWNAGVLGPITLKGLNSGTWDMSGWKWTYKTGLKGEALGLHTVTGSSSV 602

Query: 487 EWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNG 546
           EW +G S+A+KQP+TWYK TFN PPG+ PLALDMG+MGKG +WINGQS+GRHWPGYI  G
Sbjct: 603 EWVEGPSMAEKQPLTWYKATFNAPPGDAPLALDMGSMGKGQIWINGQSVGRHWPGYIARG 662

Query: 547 NCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR 606
           +CG C+YAGTY +KKCRT+CG+PSQRWYH+PRSWL P+GNLLVVFEEWGG+P  ISL++R
Sbjct: 663 SCGDCSYAGTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVER 722

Query: 607 TT 608
            T
Sbjct: 723 GT 724
Involved in cell wall degradation. Degrades polysaccharides containing beta-(1-->4)-linked galactans, acting as an exo-(1-->4)-beta-D-galactanase.
Malus domestica (taxid: 3750)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 3
>sp|P48980|BGAL_SOLLC Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1 Back     alignment and function description
>sp|Q9SCV0|BGA12_ARATH Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1 Back     alignment and function description
>sp|P45582|BGAL_ASPOF Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1 Back     alignment and function description
>sp|Q9SCW1|BGAL1_ARATH Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=2 Back     alignment and function description
>sp|Q9SCV8|BGAL4_ARATH Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1 Back     alignment and function description
>sp|Q8W0A1|BGAL2_ORYSJ Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1 Back     alignment and function description
>sp|Q00662|BGAL_DIACA Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z6K4|BGAL4_ORYSJ Beta-galactosidase 4 OS=Oryza sativa subsp. japonica GN=Os02g0219200 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
20384648 737 beta-galactosidase [Citrus sinensis] 0.988 0.815 0.986 0.0
255546097 840 beta-galactosidase, putative [Ricinus co 0.986 0.714 0.808 0.0
224087947 838 predicted protein [Populus trichocarpa] 0.986 0.715 0.789 0.0
157313306 836 beta-galactosidase protein 1 [Prunus per 0.986 0.717 0.794 0.0
165906266 836 beta-galactosidase [Prunus salicina] 0.986 0.717 0.790 0.0
448278449 725 beta-galactosidase 101 [Malus x domestic 0.985 0.826 0.777 0.0
61162199 725 beta-D-galactosidase [Pyrus pyrifolia] 0.985 0.826 0.780 0.0
84579371 725 pear beta-galactosidase2 [Pyrus communis 0.985 0.826 0.780 0.0
1352078 731 RecName: Full=Beta-galactosidase; AltNam 0.986 0.820 0.785 0.0
318136780 728 beta-D-galactosidase [Actinidia delicios 0.996 0.832 0.769 0.0
>gi|20384648|gb|AAK31801.1| beta-galactosidase [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1226 bits (3171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/601 (98%), Positives = 595/601 (99%)

Query: 8   FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
           + GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF
Sbjct: 137 YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 196

Query: 68  GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQN 127
           GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQN
Sbjct: 197 GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQN 256

Query: 128 YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSG 187
           YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSG
Sbjct: 257 YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSG 316

Query: 188 GFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVF 247
           GFVATSYDYDAPIDEYGLLNEPKWGHLR LHKAIKLCEPALVSVDPTVKSLG+NQEAHVF
Sbjct: 317 GFVATSYDYDAPIDEYGLLNEPKWGHLRGLHKAIKLCEPALVSVDPTVKSLGENQEAHVF 376

Query: 248 NSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKK 307
           NS SGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKK
Sbjct: 377 NSISGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKK 436

Query: 308 FVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFL 367
           FVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNI SNEGFL
Sbjct: 437 FVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIGSNEGFL 496

Query: 368 KNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 427
           KNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLR GVNKISLLSTSV
Sbjct: 497 KNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRAGVNKISLLSTSV 556

Query: 428 GLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVE 487
           GLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVE
Sbjct: 557 GLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVE 616

Query: 488 WAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGN 547
           WAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGN
Sbjct: 617 WAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGN 676

Query: 548 CGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 607
           CGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRS LKPSGNLLVVFEEWGGEPHWISLLKRT
Sbjct: 677 CGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSRLKPSGNLLVVFEEWGGEPHWISLLKRT 736

Query: 608 T 608
           T
Sbjct: 737 T 737

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546097|ref|XP_002514108.1| beta-galactosidase, putative [Ricinus communis] gi|223546564|gb|EEF48062.1| beta-galactosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224087947|ref|XP_002308268.1| predicted protein [Populus trichocarpa] gi|222854244|gb|EEE91791.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|157313306|gb|ABV32546.1| beta-galactosidase protein 1 [Prunus persica] Back     alignment and taxonomy information
>gi|165906266|gb|ABY71826.1| beta-galactosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|448278449|gb|AGE44111.1| beta-galactosidase 101 [Malus x domestica] Back     alignment and taxonomy information
>gi|61162199|dbj|BAD91081.1| beta-D-galactosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|84579371|dbj|BAE72074.1| pear beta-galactosidase2 [Pyrus communis] Back     alignment and taxonomy information
>gi|1352078|sp|P48981.1|BGAL_MALDO RecName: Full=Beta-galactosidase; AltName: Full=Acid beta-galactosidase; Short=Lactase; AltName: Full=Exo-(1-->4)-beta-D-galactanase; Flags: Precursor gi|507278|gb|AAA62324.1| b-galactosidase-related protein; putative [Malus x domestica] Back     alignment and taxonomy information
>gi|318136780|gb|ADV41669.1| beta-D-galactosidase [Actinidia deliciosa var. deliciosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
TAIR|locus:2091496 847 BGAL1 "beta galactosidase 1" [ 0.983 0.706 0.705 1.4e-247
TAIR|locus:2120830728 BGAL12 "beta-galactosidase 12" 0.983 0.821 0.692 8e-243
TAIR|locus:2085131727 BGAL2 "beta-galactosidase 2" [ 0.985 0.823 0.665 2e-237
TAIR|locus:2170282724 BGAL4 "beta-galactosidase 4" [ 0.983 0.825 0.673 4.6e-231
TAIR|locus:2115310 856 BGAL3 "beta-galactosidase 3" [ 0.985 0.699 0.608 2.2e-215
TAIR|locus:2028265732 BGAL5 "beta-galactosidase 5" [ 0.985 0.818 0.603 4.2e-205
TAIR|locus:2056623 852 BGAL8 "beta-galactosidase 8" [ 0.976 0.697 0.543 3.8e-181
TAIR|locus:2163951741 BGAL10 "beta-galactosidase 10" 0.978 0.802 0.513 5.4e-166
TAIR|locus:2031417815 BGAL16 "beta-galactosidase 16" 0.851 0.635 0.484 8e-142
TAIR|locus:2180439826 BGAL7 "beta-galactosidase 7" [ 0.972 0.715 0.450 3e-140
TAIR|locus:2091496 BGAL1 "beta galactosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2385 (844.6 bits), Expect = 1.4e-247, P = 1.4e-247
 Identities = 425/602 (70%), Positives = 499/602 (82%)

Query:     8 FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
             F GFPVWLKY+PGI FRTDNGPFKA M +FT KIV+MMKAE+LF++QGGPIILSQIENE+
Sbjct:   132 FGGFPVWLKYIPGISFRTDNGPFKAQMQRFTTKIVNMMKAERLFESQGGPIILSQIENEY 191

Query:    68 GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQN 127
             GP+E+++GAPG++Y  WAA+MAVGL TGVPWVMCKQDDAPDP+IN CNGFYC+ F PN+ 
Sbjct:   192 GPMEYELGAPGRSYTNWAAKMAVGLGTGVPWVMCKQDDAPDPIINACNGFYCDYFSPNKA 251

Query:   128 YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSG 187
             YKPKMWTEAWTGWFT+FG  VP RPAED+ FSVARFIQ GGSFINYYMYHGGTNFGRT+G
Sbjct:   252 YKPKMWTEAWTGWFTKFGGPVPYRPAEDMAFSVARFIQKGGSFINYYMYHGGTNFGRTAG 311

Query:   188 G-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHV 246
             G F+ATSYDYDAP+DEYGL  +PKWGHL+DLH+AIKLCEPALVS +PT   LG  QEAHV
Sbjct:   312 GPFIATSYDYDAPLDEYGLERQPKWGHLKDLHRAIKLCEPALVSGEPTRMPLGNYQEAHV 371

Query:   247 FNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQK 306
             + SKSG C+AFLANY+    AKVSFGN  Y+LPPWSIS+LPDCK  V+NTARVG Q+S+ 
Sbjct:   372 YKSKSGACSAFLANYNPKSYAKVSFGNNHYNLPPWSISILPDCKNTVYNTARVGAQTSRM 431

Query:   307 KFV--PVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNE 364
             K V  PV    SWQ+Y E+ ++  D++ FT  GL EQ+  T D SDYLWYMTDV +D+NE
Sbjct:   432 KMVRVPVHGGLSWQAYNEDPSTYIDES-FTMVGLVEQINTTRDTSDYLWYMTDVKVDANE 490

Query:   365 GFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLS 424
             GFL+NG  P LT+ SAGHA+ VFINGQLSG+ YGSL++PKLTF K V LR G NKI++LS
Sbjct:   491 GFLRNGDLPTLTVLSAGHAMHVFINGQLSGSAYGSLDSPKLTFRKGVNLRAGFNKIAILS 550

Query:   425 TSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSS 484
              +VGLPNVG HFE WNAGVLGPV+L GLN G RD+S QKWTYK+GLKGE+LSLH++SGSS
Sbjct:   551 IAVGLPNVGPHFETWNAGVLGPVSLNGLNGGRRDLSWQKWTYKVGLKGESLSLHSLSGSS 610

Query:   485 SVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPXXXX 544
             SVEWA+GA +AQKQP+TWYKTTF+ P G+ PLA+DMG+MGKG +WINGQS+GRHWP    
Sbjct:   611 SVEWAEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQIWINGQSLGRHWPAYKA 670

Query:   545 XXXXXXXXXXXTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLL 604
                        T+ E KC   CG+ SQRWYHVPRSWLKPSGNLLVVFEEWGG+P+ I+L+
Sbjct:   671 VGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLV 730

Query:   605 KR 606
             +R
Sbjct:   731 RR 732
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0004565 "beta-galactosidase activity" evidence=ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2120830 BGAL12 "beta-galactosidase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085131 BGAL2 "beta-galactosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170282 BGAL4 "beta-galactosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115310 BGAL3 "beta-galactosidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028265 BGAL5 "beta-galactosidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056623 BGAL8 "beta-galactosidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163951 BGAL10 "beta-galactosidase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031417 BGAL16 "beta-galactosidase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180439 BGAL7 "beta-galactosidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P45582BGAL_ASPOF3, ., 2, ., 1, ., 2, 30.72210.97690.7139N/Ano
Q00662BGAL_DIACA3, ., 2, ., 1, ., 2, 30.67380.98190.8166N/Ano
A2X2H7BGAL4_ORYSI3, ., 2, ., 1, ., 2, 30.66940.97530.8134N/Ano
Q9SCV0BGA12_ARATH3, ., 2, ., 1, ., 2, 30.70430.98350.8214yesno
Q8W0A1BGAL2_ORYSJ3, ., 2, ., 1, ., 2, 30.68050.97860.7194yesno
P48981BGAL_MALDO3, ., 2, ., 1, ., 2, 30.78570.98680.8207N/Ano
P48980BGAL_SOLLC3, ., 2, ., 1, ., 2, 30.7350.98350.7161N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.230.991
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
PLN03059 840 PLN03059, PLN03059, beta-galactosidase; Provisiona 0.0
pfam01301318 pfam01301, Glyco_hydro_35, Glycosyl hydrolases fam 2e-94
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional Back     alignment and domain information 
 Score = 1097 bits (2839), Expect = 0.0
 Identities = 487/602 (80%), Positives = 537/602 (89%), Gaps = 2/602 (0%)

Query: 8   FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
           F GFPVWLKYVPGIEFRTDNGPFKAAM KFTEKIV MMK+EKLF+ QGGPIILSQIENE+
Sbjct: 128 FGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187

Query: 68  GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQN 127
           GPVEW+IGAPGKAY KWAA MAV L TGVPWVMCKQ+DAPDPVI+TCNGFYCE F PN++
Sbjct: 188 GPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKD 247

Query: 128 YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSG 187
           YKPKMWTEAWTGW+TEFG AVP RPAEDL FSVARFIQ+GGSFINYYMYHGGTNFGRT+G
Sbjct: 248 YKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAG 307

Query: 188 G-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHV 246
           G F+ATSYDYDAP+DEYGL  EPKWGHLRDLHKAIKLCEPALVSVDPTV SLG NQEAHV
Sbjct: 308 GPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHV 367

Query: 247 FNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQK 306
           F SKS  CAAFLANYDT +S KV+FGN QYDLPPWS+S+LPDCKTAVFNTAR+G QSSQ 
Sbjct: 368 FKSKSA-CAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQM 426

Query: 307 KFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGF 366
           K  PV + FSWQSY EETAS+  D+T T DGLWEQ+ +T DA+DYLWYMT+V+ID +EGF
Sbjct: 427 KMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGF 486

Query: 367 LKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTS 426
           LK GQ P+LTI+SAGHAL VFINGQL+GTVYG L NPKLTFS+NVKL  G+NKISLLS +
Sbjct: 487 LKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVA 546

Query: 427 VGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSV 486
           VGLPNVG HFE WNAGVLGPVTLKGLNEGTRD+S  KW+YKIGLKGEALSLHT++GSSSV
Sbjct: 547 VGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSV 606

Query: 487 EWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNG 546
           EW +G+ LAQKQP+TWYKTTF+ P GNDPLALDM +MGKG +WINGQSIGRHWP Y  +G
Sbjct: 607 EWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHG 666

Query: 547 NCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR 606
           +C GCNYAGT+ +KKCRT CG+PSQRWYHVPRSWLKPSGNLL+VFEEWGG P  ISL+KR
Sbjct: 667 SCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKR 726

Query: 607 TT 608
           TT
Sbjct: 727 TT 728

Length = 840
>gnl|CDD|216423 pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 608
PLN03059 840 beta-galactosidase; Provisional 100.0
KOG0496649 consensus Beta-galactosidase [Carbohydrate transpo 100.0
PF01301319 Glyco_hydro_35: Glycosyl hydrolases family 35; Int 100.0
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 99.11
COG1874673 LacA Beta-galactosidase [Carbohydrate transport an 99.04
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 98.72
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 98.22
PF02449374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 98.0
PRK10150 604 beta-D-glucuronidase; Provisional 96.88
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 96.7
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 96.45
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 96.11
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 93.39
PRK10150 604 beta-D-glucuronidase; Provisional 92.32
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 91.78
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-153  Score=1288.90  Aligned_cols=606  Identities=80%  Similarity=1.397  Sum_probs=552.5

Q ss_pred             cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccccCCCCcHHH
Q 007315            2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAY   81 (608)
Q Consensus         2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~~~g~~d~~Y   81 (608)
                      |||||++||||+||+++|+|++||+||+||++|++|+++|+++|++++||+++||||||||||||||+|.+.++.+|++|
T Consensus       122 IcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Y  201 (840)
T PLN03059        122 ICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAY  201 (840)
T ss_pred             eeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHH
Confidence            89999999999999999999999999999999999999999999877999999999999999999999987788889999


Q ss_pred             HHHHHHHHHhcCCCcceEeecCCCCCCccccccCcccccccccCCCCCCceeeeeccccCCccCCCCCCCChHHHHHHHH
Q 007315           82 AKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVA  161 (608)
Q Consensus        82 ~~~L~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~~~~~~~~~p~~P~~~~Ef~~Gwf~~WG~~~~~~~~~~~~~~~~  161 (608)
                      |+||++|++++|++||||||++.++++++++||||.+|+.|.+..+.+|+|++|||+|||+|||+++++++++|++.+++
T Consensus       202 l~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~  281 (840)
T PLN03059        202 TKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVA  281 (840)
T ss_pred             HHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHH
Confidence            99999999999999999999998788889999999888889887777999999999999999999999999999999999


Q ss_pred             HHHHhCCceeeeeeeccCCCCCCCCCC-CccccCCCCCCCCcCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCccccCCC
Q 007315          162 RFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGK  240 (608)
Q Consensus       162 ~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDydAPi~E~G~~~t~ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~  240 (608)
                      ++|++|+|++||||||||||||||+|+ +++|||||||||+|+|++|+|||.+||++|.+++.++++|+..+|....++.
T Consensus       282 ~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~  361 (840)
T PLN03059        282 RFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGS  361 (840)
T ss_pred             HHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCC
Confidence            999999998899999999999999998 5999999999999999995469999999999999888888777777777888


Q ss_pred             CcceeEeccCCCceeeeeeccCCCceeEEEecCceecCCCCceeecCCcccccccccccccccccceeeeeccccccccc
Q 007315          241 NQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSY  320 (608)
Q Consensus       241 ~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  320 (608)
                      ..++++|+... .|++|+.|++.+..++|+|++..|.||+|||+|||||+.++|+++++..|.+....++....+.|+.+
T Consensus       362 ~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~  440 (840)
T PLN03059        362 NQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSY  440 (840)
T ss_pred             ceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecccccccccceee
Confidence            89999999766 79999999999999999999999999999999999999999999999777655544555555799999


Q ss_pred             cccccCCCCCCCcccCchhhhhccCCCCcceEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEccc
Q 007315          321 IEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSL  400 (608)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~Eql~~t~d~~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~~~  400 (608)
                      +|++...-...|++++.++||+++|+|.+||+||||+|.....+..++++..++|+|.+++|+++|||||+++|+.+++.
T Consensus       441 ~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~  520 (840)
T PLN03059        441 NEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGEL  520 (840)
T ss_pred             cccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeec
Confidence            99844332234889999999999999999999999999877665445666778899999999999999999999999987


Q ss_pred             CCCceEEeeeeccCCCccEEEEEEecCCCccccccCCcccccccccEEEccccCCccccccCeeEEEecCcccccccccc
Q 007315          401 ENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTV  480 (608)
Q Consensus       401 ~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~kGI~g~V~l~g~~~~~~~l~~~~W~~~~gl~ge~~~~~~~  480 (608)
                      ....++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|++.+.+..+|++|.|.|+++|.||.++++.+
T Consensus       521 ~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~  600 (840)
T PLN03059        521 SNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTI  600 (840)
T ss_pred             CCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceecccccc
Confidence            77788888888888999999999999999999999998999999999999987788899999999999999999998887


Q ss_pred             CCCCCccccccCccCCCCCceEEEEEEECCCCCCCeEEecCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCccccc
Q 007315          481 SGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEK  560 (608)
Q Consensus       481 ~~~~~~~w~~~~~~~~~~~~~~Yr~~F~~~~~~d~~~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~  560 (608)
                      ++...++|.+.+..+..+|++|||++|++|++.||+||||++||||+|||||+||||||+.....+.|+.|+|+|.|+..
T Consensus       601 ~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~  680 (840)
T PLN03059        601 TGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDK  680 (840)
T ss_pred             CCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccch
Confidence            55567889765444445679999999999999999999999999999999999999999742113457999999999999


Q ss_pred             ccccCCCCCceEEeecCcccccCCCcEEEEEEecCCCCCceEEEEEeC
Q 007315          561 KCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT  608 (608)
Q Consensus       561 ~~~~~~~~PQqtlY~vP~~~L~~g~N~ivvfE~~g~~~~~i~l~~~~~  608 (608)
                      ||+||||+|||||||||++|||+|+|+||||||+|++|..|+|+++++
T Consensus       681 kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~  728 (840)
T PLN03059        681 KCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTT  728 (840)
T ss_pred             hhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeec
Confidence            999999999999999999999999999999999999999999999864

>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
3d3a_A612 Crystal Structure Of A Beta-Galactosidase From Bact 3e-14
3d3a_A612 Crystal Structure Of A Beta-Galactosidase From Bact 9e-04
3thc_A654 Crystal Structure Of Human Beta-Galactosidase In Co 6e-12
4e8c_A595 Crystal Structure Of Streptococcal Beta-Galactosida 5e-11
4e8c_A595 Crystal Structure Of Streptococcal Beta-Galactosida 1e-06
3og2_A 1003 Native Crystal Structure Of Trichoderma Reesei Beta 4e-08
1tg7_A 971 Native Structure Of Beta-Galactosidase From Penicil 2e-07
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron Length = 612 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 10  GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 69
           G P WL     I+ R  +  +   +  F  ++   +   ++  ++GG II  Q+ENE+G 
Sbjct: 108 GLPWWLLKKKDIKLREQDPYYXERVKLFLNEVGKQLADLQI--SKGGNIIXVQVENEYGA 165
Query: 70  VEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK-----QDDAPDPVINTCN----GFYCE 120
             + I  P  +  +   + A G  TGVP   C      +++A D ++ T N        E
Sbjct: 166 --FGIDKPYISEIRDXVKQA-GF-TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDE 221
Query: 121 KFVPNQNYKPKM---WTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYH 177
           +F   +  +P      +E W+GWF  +G+   TR AE+LV      +    SF + Y  H
Sbjct: 222 QFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTH 280
Query: 178 GGTNFGRTSGGF------VATSYDYDAPIDEYGLLNEPKWGHLRDL 217
           GGT+FG   G          TSYDYDAPI+E G +  PK+  +R+L
Sbjct: 281 GGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKVT-PKYLEVRNL 325
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron Length = 612 Back     alignment and structure
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex With Galactose Length = 654 Back     alignment and structure
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose Length = 595 Back     alignment and structure
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose Length = 595 Back     alignment and structure
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei Beta-Galactosidase Length = 1003 Back     alignment and structure
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium Sp. Length = 971 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 1e-106
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 2e-07
1tg7_A 971 Beta-galactosidase; TIM barrel domain, glycoside h 8e-86
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 4e-08
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 1e-76
3d3a_A612 Beta-galactosidase; protein structure initiative I 2e-73
3d3a_A612 Beta-galactosidase; protein structure initiative I 7e-43
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 1e-62
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 7e-28
3u7v_A552 Beta-galactosidase; structural genomics, PSI-biolo 2e-13
3fn9_A 692 Putative beta-galactosidase; structural genomics, 3e-04
3cmg_A 667 Putative beta-galactosidase; structural genomics, 3e-04
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 5e-04
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Length = 1003 Back     alignment and structure
 Score =  341 bits (876), Expect = e-106
 Identities = 116/708 (16%), Positives = 202/708 (28%), Gaps = 125/708 (17%)

Query: 8   FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
             GFP WL+ V G + RTD   +  A   +   I S++   K   T GGP+IL Q ENE+
Sbjct: 125 GGGFPGWLQRVKG-KLRTDAPDYLHATDNYVAHIASIIA--KAQITNGGPVILYQPENEY 181

Query: 68  GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC----KQDDAPDPVINTCNGFYCEKFV 123
                 +  P K Y ++    A      VP +          AP   + + + +  + + 
Sbjct: 182 SGAAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYP 241

Query: 124 PN-------------------------QNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVF 158
                                          P    E   G F  FG     + +  +  
Sbjct: 242 LGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNH 301

Query: 159 SVARFIQ-----SGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGH 213
              R        +G +  N YM  GGTN+G        TSYDY A I E   ++  K+  
Sbjct: 302 EFERVFYKNNMAAGVTIFNIYMTFGGTNWGNLGHPGGYTSYDYGASIREDRRIDREKYSE 361

Query: 214 LRDLHKAIKLCEPALVSVDP--TVKSLGKNQEAHVFNSKSGKCAAFLANY--------DT 263
           L+   + +K+    + +     T      +Q   +    + +   F              
Sbjct: 362 LKLQGQFLKVSPGYITATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTA 421

Query: 264 TFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEE 323
           +++ K+        +P    S+    + +  +     V      +      F+W  + E+
Sbjct: 422 SYTVKLPTSAGDLTIPQLGGSLTLTGRDSKIHVTDYPVGKFTLLYSTA-EIFTWNEFAEK 480

Query: 324 T----------------ASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFL 367
           T                 +    +   K    E   +T   +  L  +      S    +
Sbjct: 481 TVLVLYGGAQELHEFAVKNPFGSSKTAKAKKIEGSNVTIHTTSNLTVVLQWTASSARQVV 540

Query: 368 KNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVK------LRPGVNKIS 421
           + G   +  +     A   +    L G+   S     L    +V       +R    K +
Sbjct: 541 QLGSLVIYMVDRN-SAYN-YWVPTLPGSGKQSAYGSSLMNPDSVIINGGYLIRSVAIKGN 598

Query: 422 LLSTSVGLPNVGTHFEKWNA-GVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTV 480
            LS      NV T  E       +  + + G   G        W     ++   + +  +
Sbjct: 599 ALSVQ-ADFNVTTPLEIIGIPKGISKLAVNGKELGYSVSELGDWIAHPAIEIPHVQVPEL 657

Query: 481 SGSSSVEWAQGASLAQKQP--------------------------------------MTW 502
              + ++W +  SL + +                                          
Sbjct: 658 ---TKLKWYKVDSLPEIRSNYDDSRWPLANLRTSNNTYAPLKTPVSLYGSDYGFHAGTLL 714

Query: 503 YKTTFNVPPGNDPLALDM--GAMGKGMVWINGQSIGRHWPGYIGNGN------CGGCNYA 554
           ++  F        L L    G+     VW+N + IG  + G+                  
Sbjct: 715 FRGRFTARTARQQLFLSTQGGSAFASSVWLNDRFIGS-FTGFDAASAANSSYTLDRLVRG 773

Query: 555 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWIS 602
             Y         G   + W     S   P G L        G    IS
Sbjct: 774 RRYILTVVVDSTGLD-ENWTTGDDSMKAPRGILDYALTSSSGANVSIS 820
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Length = 1003 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Length = 971 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Length = 971 Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Length = 595 Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Length = 612 Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Length = 612 Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Length = 654 Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Length = 654 Back     alignment and structure
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus} Length = 552 Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Length = 692 Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Length = 667 Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Length = 801 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 100.0
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 100.0
3d3a_A612 Beta-galactosidase; protein structure initiative I 100.0
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 100.0
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 100.0
3u7v_A552 Beta-galactosidase; structural genomics, PSI-biolo 99.49
1kwg_A645 Beta-galactosidase; TIM barrel, glycoside hydrolas 98.83
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 98.57
3tty_A675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 98.49
3fn9_A 692 Putative beta-galactosidase; structural genomics, 97.22
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 97.19
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 97.07
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 97.0
3cmg_A 667 Putative beta-galactosidase; structural genomics, 96.89
1yq2_A1024 Beta-galactosidase; glycosyl hydrolase family 2, T 96.78
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 96.71
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 96.38
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 96.1
3pzg_A383 Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 96.06
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 95.88
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 95.81
3fn9_A 692 Putative beta-galactosidase; structural genomics, 95.09
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 94.94
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 94.71
3cmg_A 667 Putative beta-galactosidase; structural genomics, 94.63
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 94.29
2osx_A481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 94.19
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 93.99
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 93.35
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 93.33
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 93.11
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 92.75
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 92.7
2wnw_A447 Activated by transcription factor SSRB; hydrolase, 92.16
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 91.38
2nt0_A497 Glucosylceramidase; cerezyme, glucocerebrosidase, 89.7
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 88.47
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 86.68
1bqc_A302 Protein (beta-mannanase); glycosyl hydrolase, fami 85.97
1i1w_A303 Endo-1,4-beta-xylanase; xylan degradation, hydrola 84.76
1xyz_A347 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola 81.92
3cui_A315 EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine 81.8
3clw_A507 Conserved exported protein; structural genomics, u 80.2
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
Probab=100.00  E-value=1.3e-113  Score=951.99  Aligned_cols=461  Identities=26%  Similarity=0.465  Sum_probs=368.2

Q ss_pred             cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccccCCCCcHHH
Q 007315            2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAY   81 (608)
Q Consensus         2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~~~g~~d~~Y   81 (608)
                      |||||++||+|+||+++| +++|++||.|+++|++||++|+++|+  ++|+++||||||+|||||||++    + ||++|
T Consensus        95 i~aEw~~GG~P~WL~~~p-~~lRt~~p~y~~~~~~~~~~l~~~l~--~~~~~~GgpVI~~QvENEyG~~----~-~~~~Y  166 (595)
T 4e8d_A           95 ICAEWEFGGLPAWLLTKN-MRIRSSDPAYIEAVGRYYDQLLPRLV--PRLLDNGGNILMMQVENEYGSY----G-EDKAY  166 (595)
T ss_dssp             CCTTBGGGGCCGGGGGSS-SCSSSSCHHHHHHHHHHHHHHGGGTG--GGBGGGTSCEEEEESSSSGGGT----C-CCHHH
T ss_pred             eecccCCCcCChhhccCC-ceeccCCHHHHHHHHHHHHHHHHHHH--HHhcccCCCEEEEEcccccccc----C-CcHHH
Confidence            899999999999999998 89999999999999999999999999  9999999999999999999997    3 79999


Q ss_pred             HHHHHHHHHhcCCCcceEeecCCC-------CC--CccccccC-cccc-ccc------ccCCCCC-CceeeeeccccCCc
Q 007315           82 AKWAAQMAVGLNTGVPWVMCKQDD-------AP--DPVINTCN-GFYC-EKF------VPNQNYK-PKMWTEAWTGWFTE  143 (608)
Q Consensus        82 ~~~L~~~~~~~g~~vp~~~~~~~~-------~~--~~~~~t~n-g~~~-~~~------~~~~p~~-P~~~~Ef~~Gwf~~  143 (608)
                      |+||+++++++|++|||+|||+.+       ..  +++++||| |..| +.|      .+.+|++ |+|++|||+|||||
T Consensus       167 ~~~l~~~~~~~Gi~vpl~t~d~~~~~~~~~G~~~~~~~~~t~nfg~~~~~~~~~~~~~~~~~p~~~P~~~~Ef~~Gwfd~  246 (595)
T 4e8d_A          167 LRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNR  246 (595)
T ss_dssp             HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHCCGGGTCEEEEEESSCHHHHHHHHHHHHHHTTCCCCCEEEEEECSCCCB
T ss_pred             HHHHHHHHHHcCCcEEEEEccCcchhcccCCccCCCCeEEEeeCCCchhHhHHHHHHhhhcCCCCCCeEEEeeccccccc
Confidence            999999999999999999999853       22  67889998 6666 333      2345888 99999999999999


Q ss_pred             cCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCC--------CccccCCCCCCCCcCCCCCchhhHHHH
Q 007315          144 FGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG--------FVATSYDYDAPIDEYGLLNEPKWGHLR  215 (608)
Q Consensus       144 WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~--------~~~tSYDydAPi~E~G~~~t~ky~~lr  215 (608)
                      ||++++++++++++..++++|+.| + +||||||||||||||+|+        .++|||||||||+|+|++ ||||.+||
T Consensus       247 WG~~~~~~~~~~~~~~~~~~l~~g-s-~N~YM~hGGTNfG~~~Ga~~~~~~~~p~~TSYDYdApi~E~G~~-t~Ky~~lr  323 (595)
T 4e8d_A          247 WKEPIITRDPKELADAVREVLEQG-S-INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDEEGNP-TAKYLAVK  323 (595)
T ss_dssp             TTSCCCCCCHHHHHHHHHHHHHHS-E-EEEEEEECCBCCTTCBCEEEETTEEEEBCSBCCTTCSBCTTSCB-CHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHcC-C-ceEEecccccCcccccCCCCCCCCCCCCCCccCCCCccCcCCCc-cHHHHHHH
Confidence            999999999999999999999999 6 799999999999999987        257999999999999999 69999999


Q ss_pred             HHHHHHHhhcCCCCCCCCccccCCCCcceeEeccCCCceeeeeeccCCCceeEEEecCceecCCCCceeecCCccccccc
Q 007315          216 DLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFN  295 (608)
Q Consensus       216 ~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~  295 (608)
                      +++..+.   +.++..+|...+      +..|..                   |.+..        .++        +|+
T Consensus       324 ~~i~~~~---~~~p~~~P~~~~------~~~~~~-------------------v~l~~--------~~~--------L~~  359 (595)
T 4e8d_A          324 KMMATHF---SEYPQLEPLYKE------SMELDA-------------------IPLVE--------KVS--------LFE  359 (595)
T ss_dssp             HHHHHHC---TTSCCCCCCCCC------BCCEEE-------------------EEEEE--------EEE--------HHH
T ss_pred             HHHHHhC---CCCCCCCCCCCc------ccccce-------------------EEecc--------ccc--------HHH
Confidence            9976541   112111122212      222221                   11100        011        122


Q ss_pred             ccccccccccceeeeeccccccccccccccCCCCCCCcccCchhhhhccCCCCcceEEEEEEEecCCCcccccCCCCCce
Q 007315          296 TARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLL  375 (608)
Q Consensus       296 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Eql~~t~d~~GyvlYrt~~~~~~~~~~~~~~~~~~L  375 (608)
                      .++..       .+|+.+                ..|++    ||+|+|   .+||+||||+++....        ...|
T Consensus       360 ~l~~l-------~~~~~s----------------~~P~~----mE~lgq---~~GyvlY~t~i~~~~~--------~~~L  401 (595)
T 4e8d_A          360 TLDSL-------SSPVES----------------LYPQK----MEELGQ---SYGYLLYRTETNWDAE--------EERL  401 (595)
T ss_dssp             HHHHH-------CCCEEE----------------SSCCB----TGGGTC---CSSEEEEEEEEECSSS--------SEEE
T ss_pred             hhhhc-------CCcccc----------------CCCCC----HHHcCC---CcCeEEEEeccCCCCC--------Ccee
Confidence            22110       012211                01333    899976   9999999999974322        2478


Q ss_pred             EecCcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCc-cEEEEEEecCCCccccccC--CcccccccccEEEccc
Q 007315          376 TIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLSTSVGLPNVGTHF--EKWNAGVLGPVTLKGL  452 (608)
Q Consensus       376 ~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILven~Gr~N~G~~~--~~~~kGI~g~V~l~g~  452 (608)
                      ++.+++|||+|||||+++|++++......+.+    +...+. ++|+||||||||||||..+  .+++|||+|+|+|++.
T Consensus       402 ~~~~~~Dra~Vfvdg~~~g~l~r~~~~~~i~~----~~~~~~~~~L~ILVEN~GRvNyG~~~~~~~~~KGi~g~V~l~~~  477 (595)
T 4e8d_A          402 RIIDGRDRAQLYVDGQWVKTQYQTEIGEDIFY----QGKKKGLSRLDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLH  477 (595)
T ss_dssp             EEEEEESEEEEEETTEEEEEEEGGGTTSCEEE----CCCSSSEEEEEEEEECCCCCCSGGGTTCGGGSCEEEEEEEETTE
T ss_pred             ecCCCceEEEEEECCEEEEEEEcccCcceEEe----ecCCCCCCEEEEEEEcCCCcccCcccCcCCCCCCCCCCeEECCE
Confidence            99999999999999999999998654333332    233444 7999999999999999988  5789999999999987


Q ss_pred             cCCccccccCeeEEEecCccccccccccCCCCCccccccCccCCCCCceEEEEEEECCCCCCCeEEecCCcceEEEEECC
Q 007315          453 NEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWING  532 (608)
Q Consensus       453 ~~~~~~l~~~~W~~~~gl~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~Yr~~F~~~~~~d~~~Ld~~g~gKG~v~VNG  532 (608)
                           .|++|+ .|+++|+.-          ...+|....   ...+|+|||++|+++++.| +||||++|+||+|||||
T Consensus       478 -----~l~~W~-~~~L~l~~~----------~~~~~~~~~---~~~~P~fy~g~f~~~~~~D-TfLd~~gwgKG~v~VNG  537 (595)
T 4e8d_A          478 -----FLLNWK-HYPLPLDNP----------EKIDFSKGW---TQGQPAFYAYDFTVEEPKD-TYLDLSEFGKGVAFVNG  537 (595)
T ss_dssp             -----ECCCEE-EEEECCCCG----------GGCCTTSCC---CTTSCEEEEEEEEESSCCB-EEEECTTCCEEEEEETT
T ss_pred             -----EcCCcE-EEeeccchh----------hhccccccc---CCCCCeEEEEEEEcCCCCC-EEEeCCCCceEEEEECC
Confidence                 677655 488887631          122232221   1345799999999987666 59999999999999999


Q ss_pred             eeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceEEeecCcccccCCCcEEEEEEecCCCCCceEEEEE
Q 007315          533 QSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR  606 (608)
Q Consensus       533 ~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PQqtlY~vP~~~L~~g~N~ivvfE~~g~~~~~i~l~~~  606 (608)
                      |||||||+    +|                      |||||| ||++|||+|+|+|||||+++.....|+|++.
T Consensus       538 ~nLGRYW~----~G----------------------PQ~tLY-vP~~~Lk~G~NeIvvfEl~~~~~~~i~~~~~  584 (595)
T 4e8d_A          538 QNLGRFWN----VG----------------------PTLSLY-IPHSYLKEGANRIIIFETEGQYKEEIHLTRK  584 (595)
T ss_dssp             EEEEEEET----TC----------------------SBCEEE-ECGGGSCSEEEEEEEEESSSCCCSEEEEESS
T ss_pred             eeeecccC----CC----------------------CeEEEE-ecHHHhCcCCceEEEEEecCCCCceEEeecc
Confidence            99999996    79                      999999 9999999999999999999877778888764
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus} Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ... Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A Back     alignment and structure
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3 Back     alignment and structure
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A* Back     alignment and structure
>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 608
d1tg7a5354 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-ter 7e-52
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Length = 354 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

 Score =  180 bits (456), Expect = 7e-52
 Identities = 60/251 (23%), Positives = 87/251 (34%), Gaps = 38/251 (15%)

Query: 8   FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
             GFP WL+ V GI  RT +  +  A   +   I + +   ++  T GGPIIL Q ENE+
Sbjct: 105 GGGFPGWLQRVDGI-LRTSDEAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEY 161

Query: 68  G-PVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC----KQDDAPDPVINTCNGFYC--- 119
                   G P  +Y ++    A      VP++         +AP       + +     
Sbjct: 162 SGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSY 221

Query: 120 ----------------------EKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLV 157
                                           P    E   G F  +G     + A  L 
Sbjct: 222 PLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLN 281

Query: 158 FSVARFIQ-----SGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWG 212
               R         G +F+N YM  GGTN+G        TSYDY + I E   +   K+ 
Sbjct: 282 HEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYS 341

Query: 213 HLRDLHKAIKL 223
            L+ L    K+
Sbjct: 342 ELKLLGNFAKV 352

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
d1tg7a5354 Beta-galactosidase LacA, N-terminal domain {Penici 100.0
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.65
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 98.88
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 97.74
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 97.66
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 97.5
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 97.47
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 97.14
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 96.97
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 96.8
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 95.81
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 95.66
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 95.56
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 94.68
d1kwga2393 A4 beta-galactosidase {Thermus thermophilus [TaxId 94.53
d2vzsa5339 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 93.49
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 87.15
d1bhga3304 beta-Glucuronidase, domain 3 {Human (Homo sapiens) 86.25
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

Probab=100.00  E-value=4e-42  Score=363.16  Aligned_cols=219  Identities=29%  Similarity=0.395  Sum_probs=178.5

Q ss_pred             cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccc-cCCCCcHH
Q 007315            2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKA   80 (608)
Q Consensus         2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~-~~g~~d~~   80 (608)
                      +|+||++||+|.|+...+. .+|+++|.|++++++|+++|+++++  +++++|+|||||+|||||||++.. ..+.++++
T Consensus        99 ~~~~w~~~~~p~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~ii~wqi~NE~g~~~~~~~~~~~~~  175 (354)
T d1tg7a5          99 INAEVSGGGFPGWLQRVDG-ILRTSDEAYLKATDNYASNIAATIA--KAQITNGGPIILYQPENEYSGACCGYNGFPDGS  175 (354)
T ss_dssp             CCTTBGGGGCCGGGGGCSS-CTTSSCHHHHHHHHHHHHHHHHHHH--HTBGGGTSSEEEECCSSCCCCBCTTCCCCSCHH
T ss_pred             cCcccccCCCCcccccCCC-cccCCCHHHHHHHHHHHHHHHHHHH--HHHhccCCCceEEEeccccCccccccccchHHH
Confidence            7899999999999998776 4999999999999999999999999  999999999999999999998632 23557899


Q ss_pred             HHHHHHHHHHhcCCCcceEeecCCCC----CCcccccc---------Ccccccc----------------cccCCCCCCc
Q 007315           81 YAKWAAQMAVGLNTGVPWVMCKQDDA----PDPVINTC---------NGFYCEK----------------FVPNQNYKPK  131 (608)
Q Consensus        81 Y~~~L~~~~~~~g~~vp~~~~~~~~~----~~~~~~t~---------ng~~~~~----------------~~~~~p~~P~  131 (608)
                      |+++|++++++.++++|+++++.+..    +..+...+         .++.+.+                +...+|.+|.
T Consensus       176 ~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~d~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~  255 (354)
T d1tg7a5         176 YMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPY  255 (354)
T ss_dssp             HHHHHHHHHHHTTCCSCBBCCBSSSSCTTCTTSCTTCCSBCEEEECTTCSCCSCTTCCCTTCSCCCHHHHHHHHCTTSCC
T ss_pred             HHHHHHhhhhccCcccceEeccchhhccCCCCcccccccccccccCCCccccCCcccccccccchHHHHHHhhcCCccce
Confidence            99999999999999999999987521    11111111         1111111                1134689999


Q ss_pred             eeeeeccccCCccCCCCCCCChHHHHHHHHH-----HHHhCCceeeeeeeccCCCCCCCCCCCccccCCCCCCCCcCCCC
Q 007315          132 MWTEAWTGWFTEFGSAVPTRPAEDLVFSVAR-----FIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLL  206 (608)
Q Consensus       132 ~~~Ef~~Gwf~~WG~~~~~~~~~~~~~~~~~-----~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDydAPi~E~G~~  206 (608)
                      +++|||+||+++||+....++++++...+.+     .++.|+..+||||||||||||++++..+.|||||+|||+|+|++
T Consensus       256 ~~~E~~~g~~~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~YM~~GGTnfG~~~~~~~~tsYdy~api~e~G~~  335 (354)
T d1tg7a5         256 SLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNI  335 (354)
T ss_dssp             EEEEEESSCCCCTTCCCHHHHHHHTSHHHHHHHHHHHHTTTCSEEEEECSBCCBCCTTCBCTTSCSBCCTTCSBCTTCCC
T ss_pred             eeeccccccccccCCCccccCHHHHHHHHHHHHHhhhhhccccceEEeEEecccCCCCCCCCCCCCCCCCCCeECcCCCC
Confidence            9999999999999998876666665554444     35678888999999999999999998899999999999999999


Q ss_pred             CchhhHHHHHHHHHHHh
Q 007315          207 NEPKWGHLRDLHKAIKL  223 (608)
Q Consensus       207 ~t~ky~~lr~l~~~~~~  223 (608)
                      +.++|.++|.|++|++.
T Consensus       336 ~~~yy~~~k~l~~~~~~  352 (354)
T d1tg7a5         336 TREKYSELKLLGNFAKV  352 (354)
T ss_dssp             CSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            43466788889999873
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure